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ONTOLOGY REPORT - ANNOTATIONS

Term:chromatin DNA binding
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Accession:GO:0031490 term browser browse the term
Definition:Binding to DNA that is assembled into chromatin.


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chromatin DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN4 actinin alpha 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:47,493,834...47,565,999
Ensembl chr 6:47,493,919...47,565,998 		JBrowse link
G APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:78,451,845...78,454,938
Ensembl chr 7:78,451,851...78,454,938 		JBrowse link
G ATOH1 atonal bHLH transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:125,768,232...125,770,619
Ensembl chr 8:125,768,286...125,770,545 		JBrowse link
G ATRX ATRX chromatin remodeler enables IBA GO_Central GO_REF:0000033 NCBI chr  X:61,584,028...61,872,341
Ensembl chr  X:61,584,848...61,872,287 		JBrowse link
G BAP1 BRCA1 associated deubiquitinase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr13:34,544,570...34,553,538
Ensembl chr13:34,544,581...34,553,483 		JBrowse link
G BCL6 BCL6 transcription repressor enables IEA Ensembl GO_REF:0000107 NCBI chr13:125,377,247...125,401,328
Ensembl chr13:125,377,250...125,393,330 		JBrowse link
G CEBPA CCAAT enhancer binding protein alpha enables IEA Ensembl GO_REF:0000107 NCBI chr 6:43,083,200...43,085,884
Ensembl chr 6:43,083,207...43,085,836 		JBrowse link
G CEBPB CCAAT enhancer binding protein beta enables IEA Ensembl GO_REF:0000107 NCBI chr17:51,722,633...51,723,673
Ensembl chr17:51,722,426...51,724,305 		JBrowse link
G CLOCK clock circadian regulator enables IEA Ensembl GO_REF:0000107 NCBI chr 8:54,793,323...54,910,192
Ensembl chr 8:54,793,342...54,877,777 		JBrowse link
G CREBBP CREB binding protein enables IBA GO_Central GO_REF:0000033 NCBI chr 3:38,388,366...38,530,243
Ensembl chr 3:38,388,547...38,530,224 		JBrowse link
G DDX17 DEAD-box helicase 17 enables ISO (PMID:29431742) MGI PMID:29431742 NCBI chr 5:9,485,792...9,505,157
Ensembl chr 5:9,485,702...9,505,157 		JBrowse link
G DHX9 DExH-box helicase 9 enables IEA Ensembl GO_REF:0000107 NCBI chr 9:124,141,929...124,183,838
Ensembl chr 9:124,141,967...124,185,349 		JBrowse link
G EOMES eomesodermin enables ISO (PMID:30186101) MGI PMID:30186101 NCBI chr13:14,209,590...14,216,184
Ensembl chr13:14,209,736...14,215,797 		JBrowse link
G EP300 E1A binding protein p300 enables ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:20702579 GO_REF:0000033 GO_REF:0000107 RGD:5128544 NCBI chr 5:7,311,165...7,394,515
Ensembl chr 5:7,311,171...7,393,760 		JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables IEA Ensembl GO_REF:0000107 NCBI chr 9:109,384,976...109,450,943
Ensembl chr 9:109,385,015...109,450,941 		JBrowse link
G FOXC2 forkhead box C2 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:2,552,141...2,555,041
Ensembl chr 6:2,552,862...2,554,367 		JBrowse link
G FOXO1 forkhead box O1 enables ISO (PMID:29320745) MGI PMID:29320745 NCBI chr11:15,317,222...15,410,059
Ensembl chr11:15,317,124...15,410,473 		JBrowse link
G FOXO3 forkhead box O3 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:74,626,673...74,760,323
Ensembl chr 1:74,628,218...74,760,325 		JBrowse link
G GATA1 GATA binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr  X:42,898,431...42,905,939
Ensembl chr  X:42,898,442...42,905,976 		JBrowse link
G GLI2 GLI family zinc finger 2 enables IEA Ensembl GO_REF:0000107 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306 		JBrowse link
G GRHL1 grainyhead like transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:126,462,946...126,511,185
Ensembl chr 3:126,463,387...126,511,321 		JBrowse link
G GRHL2 grainyhead like transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 4:35,368,788...35,565,394
Ensembl chr 4:35,371,136...35,564,919 		JBrowse link
G GRHL3 grainyhead like transcription factor 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:82,014,022...82,050,240
Ensembl chr 6:82,013,969...82,050,236 		JBrowse link
G H1-0 H1.0 linker histone enables IEA Ensembl GO_REF:0000107 NCBI chr 5:10,038,944...10,041,242
Ensembl chr 5:10,038,966...10,041,067 		JBrowse link
G H1-1 H1.1 linker histone, cluster member enables ISO (PMID:15911621) UniProt PMID:15911621 NCBI chr 7:20,717,123...20,717,916 JBrowse link
G H1-2 H1.2 linker histone, cluster member enables ISO (PMID:15911621) UniProt PMID:15911621 NCBI chr 7:20,743,716...20,744,356
Ensembl chr 7:20,743,716...20,744,356 		JBrowse link
G H1-3 H1.3 linker histone, cluster member enables ISO (PMID:15911621) UniProt PMID:15911621 NCBI chr 7:20,881,642...20,882,307 JBrowse link
G H1-3 H1.3 linker histone, cluster member enables IEA Ensembl GO_REF:0000107 Ensembl chr 7:20,862,952...20,882,307 JBrowse link
G H1-5 H1.5 linker histone, cluster member enables ISO (PMID:15911621), (PMID:22956909) UniProt PMID:15911621 PMID:22956909 NCBI chr 7:21,621,863...21,622,646 JBrowse link
G H2AZ1 H2A.Z variant histone 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:120,563,752...120,566,023
Ensembl chr 8:120,563,752...120,566,177 		JBrowse link
G HCFC1 host cell factor C1 enables ISO (PMID:22878500) MGI PMID:22878500 NCBI chr  X:124,673,125...124,694,846
Ensembl chr  X:124,673,128...124,694,152 		JBrowse link
G HDAC2 histone deacetylase 2 enables ISO (PMID:18458156) MGI PMID:18458156 NCBI chr 1:79,867,713...79,901,597
Ensembl chr 1:79,863,094...79,901,585 		JBrowse link
G HDAC3 histone deacetylase 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:143,273,188...143,287,421
Ensembl chr 2:143,273,192...143,287,399 		JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U enables IEA Ensembl GO_REF:0000107 NCBI chr10:17,475,266...17,497,060
Ensembl chr10:17,477,902...17,497,030 		JBrowse link
G HR HR lysine demethylase and nuclear receptor corepressor enables IBA GO_Central GO_REF:0000033 NCBI chr14:6,386,900...6,404,968
Ensembl chr14:6,386,903...6,407,031 		JBrowse link
G HSF1 heat shock transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 4:463,531...486,483
Ensembl chr 4:463,393...486,473 		JBrowse link
G INSM1 INSM transcriptional repressor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr17:28,379,529...28,382,554
Ensembl chr17:28,379,880...28,381,427 		JBrowse link
G JMJD1C jumonji domain containing 1C enables IBA GO_Central GO_REF:0000033 NCBI chr14:66,640,845...66,966,911
Ensembl chr14:66,640,849...66,920,324 		JBrowse link
G KDM3A lysine demethylase 3A enables IBA GO_Central GO_REF:0000033 NCBI chr 3:58,300,109...58,355,000
Ensembl chr 3:58,302,949...58,354,945 		JBrowse link
G KDM3B lysine demethylase 3B enables IBA GO_Central GO_REF:0000033 NCBI chr 2:140,346,145...140,418,556
Ensembl chr 2:140,346,223...140,418,527 		JBrowse link
G KDM5A lysine demethylase 5A enables ISO (PMID:18483221) MGI PMID:18483221 NCBI chr 5:67,628,791...67,716,143
Ensembl chr 5:67,629,380...67,715,905 		JBrowse link
G KDM6A lysine demethylase 6A enables IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:39,953,764...40,154,197
Ensembl chr  X:39,953,814...40,154,029 		JBrowse link
G KDM6B lysine demethylase 6B enables IBA GO_Central GO_REF:0000033 NCBI chr12:53,087,072...53,108,949
Ensembl chr12:53,098,964...53,108,214 		JBrowse link
G KLF4 KLF transcription factor 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:248,604,817...248,609,574
Ensembl chr 1:248,604,820...248,609,035 		JBrowse link
G LEMD2 LEM domain nuclear envelope protein 2 enables IBA GO_Central GO_REF:0000033 NCBI chr 7:29,980,394...29,997,077
Ensembl chr 7:29,980,401...29,997,115 		JBrowse link
G LEMD3 LEM domain containing 3 enables IBA GO_Central GO_REF:0000033 NCBI chr 5:29,596,334...29,672,704
Ensembl chr 5:29,596,334...29,673,875 		JBrowse link
G LOC100627380 lysine-specific demethylase 4D-like enables ISO (PMID:6953429) MGI PMID:6953429 NCBI chr 9:27,083,348...27,085,693 JBrowse link
G MACROH2A1 macroH2A.1 histone enables IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,534,138...137,623,886 		JBrowse link
G MACROH2A2 macroH2A.2 histone enables IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr14:73,002,385...73,055,228
Ensembl chr14:73,003,117...73,055,229 		JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:9038338 RGD:1601325 NCBI chr  X:124,735,523...124,789,063
Ensembl chr  X:124,735,656...124,738,659 		JBrowse link
G MED1 mediator complex subunit 1 ISO RGD PMID:20702579 RGD:5128544 NCBI chr12:22,830,405...22,872,420
Ensembl chr12:22,841,205...22,872,409 		JBrowse link
G MYOD1 myogenic differentiation 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:41,422,522...41,424,236
Ensembl chr 2:41,415,775...41,424,435 		JBrowse link
G MYOG myogenin enables IEA Ensembl GO_REF:0000107 NCBI chr 9:113,783,233...113,785,312
Ensembl chr 9:113,782,284...113,787,340 		JBrowse link
G NEUROG3 neurogenin 3 enables IEA Ensembl GO_REF:0000107 NCBI chr14:72,604,203...72,606,362
Ensembl chr14:72,604,467...72,606,360 		JBrowse link
G NKAP NFKB activating protein enables ISO (PMID:20610818) MGI PMID:20610818 NCBI chr  X:98,233,504...98,276,839
Ensembl chr  X:98,256,632...98,276,773 		JBrowse link
G NOTCH1 notch receptor 1 enables IEA Ensembl GO_REF:0000107
G NR1H2 nuclear receptor subfamily 1 group H member 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:55,238,536...55,245,457
Ensembl chr 6:55,239,500...55,245,456 		JBrowse link
G NR1H3 nuclear receptor subfamily 1 group H member 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:15,315,283...15,336,785
Ensembl chr 2:15,315,282...15,334,820 		JBrowse link
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase enables IEA Ensembl GO_REF:0000107 NCBI chr  X:57,521,091...57,558,467
Ensembl chr  X:57,521,098...57,558,515 		JBrowse link
G PAX6 paired box 6 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:28,971,565...29,001,149
Ensembl chr 2:28,978,287...29,001,200 		JBrowse link
G PER1 period circadian regulator 1 enables IEA Ensembl GO_REF:0000107 NCBI chr12:53,361,863...53,376,723
Ensembl chr12:53,361,889...53,374,248 		JBrowse link
G PITX2 paired like homeodomain 2 enables ISO (PMID:21035439) MGI PMID:21035439 NCBI chr 8:111,697,364...111,723,295
Ensembl chr 8:111,698,757...111,723,298 		JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit enables IBA GO_Central GO_REF:0000033 NCBI chr 1:254,033,378...254,036,224
Ensembl chr 1:254,033,385...254,035,978 		JBrowse link
G POU5F1 POU class 5 homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:23,564,654...23,570,691 JBrowse link
G PPARGC1A PPARG coactivator 1 alpha enables IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:17,841,844...18,527,953
Ensembl chr 8:17,841,844...17,946,992 		JBrowse link
G PRDM14 PR/SET domain 14 enables IEA Ensembl GO_REF:0000107 NCBI chr 4:65,273,988...65,295,362
Ensembl chr 4:65,271,315...65,295,178 		JBrowse link
G RARA retinoic acid receptor alpha enables IEA Ensembl GO_REF:0000107 NCBI chr12:22,047,449...22,085,759
Ensembl chr12:22,047,443...22,085,673 		JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit enables IEA Ensembl GO_REF:0000107 NCBI chr 2:6,594,869...6,602,684
Ensembl chr 2:6,593,969...6,603,469 		JBrowse link
G RUNX2 RUNX family transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:40,106,581...40,353,304
Ensembl chr 7:40,106,532...40,460,687 		JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:54,250,494...54,263,492
Ensembl chr 6:54,250,515...54,266,893 		JBrowse link
G RXRA retinoid X receptor alpha enables ISO (PMID:17952069), (PMID:29431742) MGI PMID:17952069 PMID:29431742 NCBI chr 1:273,698,842...273,797,622
Ensembl chr 1:273,705,505...273,797,620 		JBrowse link
G RXRB retinoid X receptor beta enables ISO (PMID:29431742) MGI PMID:29431742 NCBI chr 7:25,236,005...25,242,842
Ensembl chr 7:25,236,004...25,242,875 		JBrowse link
G SBNO1 strawberry notch homolog 1 enables IBA GO_Central GO_REF:0000033 NCBI chr14:29,559,103...29,622,221
Ensembl chr14:29,571,125...29,620,090 		JBrowse link
G SBNO2 strawberry notch homolog 2 enables IBA GO_Central GO_REF:0000033 NCBI chr 2:77,278,059...77,320,371
Ensembl chr 2:77,275,013...77,320,367 		JBrowse link
G SIRT6 sirtuin 6 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:74,568,539...74,577,774
Ensembl chr 2:74,568,493...74,577,772 		JBrowse link
G SMAD3 SMAD family member 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:164,998,457...165,124,455
Ensembl chr 1:164,998,103...165,124,449 		JBrowse link
G SOX2 SRY-box transcription factor 2 enables ISO (PMID:24268575) MGI PMID:24268575 NCBI chr13:119,668,476...119,669,435
Ensembl chr13:119,668,476...119,669,435 		JBrowse link
G SRF serum response factor enables IEA Ensembl GO_REF:0000107 NCBI chr 7:38,213,300...38,223,686
Ensembl chr 7:38,213,487...38,222,144 		JBrowse link
G STAT3 signal transducer and activator of transcription 3 enables IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr12:20,407,316...20,471,091
Ensembl chr12:20,407,233...20,472,992 		JBrowse link
G SUZ12 SUZ12 polycomb repressive complex 2 subunit enables IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr12:42,983,597...43,032,671
Ensembl chr12:42,983,601...43,032,654 		JBrowse link
G TBR1 T-box brain transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr15:68,208,884...68,222,993
Ensembl chr15:68,213,562...68,222,990 		JBrowse link
G THRA thyroid hormone receptor alpha enables IEA Ensembl GO_REF:0000107 NCBI chr12:22,270,506...22,296,684
Ensembl chr12:22,270,062...22,296,618 		JBrowse link
G THRB thyroid hormone receptor beta enables IEA Ensembl GO_REF:0000107 NCBI chr13:10,900,716...11,360,587
Ensembl chr13:10,900,724...11,359,544 		JBrowse link
G TOP1 DNA topoisomerase I ISO RGD PMID:1332866 RGD:1580856 NCBI chr17:43,710,270...43,799,700
Ensembl chr17:43,710,290...43,799,700 		JBrowse link
G TOX thymocyte selection associated high mobility group box enables IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:73,810,180...74,115,352
Ensembl chr 4:73,810,290...74,115,151 		JBrowse link
G TOX2 TOX high mobility group box family member 2 enables IBA GO_Central GO_REF:0000033 NCBI chr17:46,433,005...46,577,076
Ensembl chr17:46,433,025...46,577,072 		JBrowse link
G TOX3 TOX high mobility group box family member 3 enables IBA GO_Central GO_REF:0000033 NCBI chr 6:32,492,686...32,609,923
Ensembl chr 6:32,494,236...32,609,926 		JBrowse link
G TOX4 TOX high mobility group box family member 4 enables IBA GO_Central GO_REF:0000033 NCBI chr 7:77,679,405...77,698,952
Ensembl chr 7:77,678,475...77,698,917 		JBrowse link
G VAX1 ventral anterior homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chr14:127,269,723...127,277,007
Ensembl chr14:127,271,566...127,275,744 		JBrowse link
G VAX2 ventral anterior homeobox 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:71,593,807...71,622,487
Ensembl chr 3:71,593,812...71,622,444 		JBrowse link
G WBP2 WW domain binding protein 2 enables IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr12:5,565,112...5,573,277
Ensembl chr12:5,565,137...5,573,274 		JBrowse link
G XBP1 X-box binding protein 1 enables ISO (PMID:25280941) UniProt PMID:25280941 NCBI chr14:46,011,239...46,016,526
Ensembl chr14:46,008,377...46,016,526 		JBrowse link
G ZIC2 Zic family member 2 enables ISO (PMID:20676059) UniProt PMID:20676059 NCBI chr11:68,840,802...68,845,441
Ensembl chr11:68,840,631...68,845,378 		JBrowse link
chromatin insulator sequence binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTCF CCCTC-binding factor enables IEA Ensembl GO_REF:0000107 NCBI chr 6:28,188,002...28,261,009
Ensembl chr 6:28,195,647...28,261,009 		JBrowse link
G CTCFL CCCTC-binding factor like enables IBA GO_Central GO_REF:0000033 NCBI chr17:57,860,231...57,891,094
Ensembl chr17:57,860,787...57,891,924 		JBrowse link
G GZF1 GDNF inducible zinc finger protein 1 enables IBA GO_Central GO_REF:0000033 NCBI chr17:30,351,433...30,360,245
Ensembl chr17:30,351,497...30,359,845 		JBrowse link
G PRDM5 PR/SET domain 5 enables IBA GO_Central GO_REF:0000033 NCBI chr 8:103,188,312...103,383,955
Ensembl chr 8:103,189,561...103,382,094 		JBrowse link
G REPIN1 replication initiator 1 enables IBA GO_Central GO_REF:0000033 NCBI chr18:55,925,529...55,930,698
Ensembl chr18:55,925,451...55,930,695 		JBrowse link
G ZFX zinc finger protein X-linked enables IBA GO_Central GO_REF:0000033 NCBI chr  X:20,220,812...20,273,689
Ensembl chr  X:20,220,853...20,275,185 		JBrowse link
G ZNF276 zinc finger protein 276 enables IBA GO_Central GO_REF:0000033 NCBI chr 6:298,034...316,451
Ensembl chr 6:298,039...313,403 		JBrowse link
G ZNF646 zinc finger protein 646 enables IBA GO_Central GO_REF:0000033 NCBI chr 3:17,396,757...17,406,630
Ensembl chr 3:17,384,088...17,406,624 		JBrowse link
G ZNF692 zinc finger protein 692 enables IBA GO_Central GO_REF:0000033 NCBI chr 2:52,288,641...52,297,155
Ensembl chr 2:52,284,193...52,296,973 		JBrowse link
chromatin loop anchoring activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTCF CCCTC-binding factor enables IEA Ensembl GO_REF:0000107 NCBI chr 6:28,188,002...28,261,009
Ensembl chr 6:28,195,647...28,261,009 		JBrowse link
nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H1-0 H1.0 linker histone enables IBA GO_Central GO_REF:0000033 NCBI chr 5:10,038,944...10,041,242
Ensembl chr 5:10,038,966...10,041,067 		JBrowse link
G H1-6 H1.6 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr 7:20,774,135...20,777,244
Ensembl chr 7:20,775,859...20,776,497 		JBrowse link
G H1-7 H1.7 linker histone enables IBA GO_Central GO_REF:0000033 NCBI chr 5:78,699,291...78,700,227
Ensembl chr 5:78,698,577...78,700,109 		JBrowse link
G H1-8 H1.8 linker histone enables ISS
IBA		 CAFA
GO_Central		 GO_REF:0000024 GO_REF:0000033 NCBI chr13:68,921,491...68,943,061
Ensembl chr13:68,938,024...68,942,744 		JBrowse link
G H2AZ1 H2A.Z variant histone 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:120,563,752...120,566,023
Ensembl chr 8:120,563,752...120,566,177 		JBrowse link
G H3-3A H3.3 histone A enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,923,077...13,948,484 		JBrowse link
G H3-3B H3.3 histone B enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726 		JBrowse link
G HMGA2 high mobility group AT-hook 2 enables ISO (PMID:17078040) UniProt PMID:17078040 NCBI chr 5:30,188,521...30,329,635 JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 enables IEA InterPro GO_REF:0000002 NCBI chr13:202,936,313...202,943,496
Ensembl chr13:202,905,233...202,943,575 		JBrowse link
G HMGN2 high mobility group nucleosomal binding domain 2 enables IEA InterPro GO_REF:0000002 NCBI chr 6:83,857,114...83,861,907
Ensembl chr 6:83,858,177...83,861,905 		JBrowse link
G HMGN3 high mobility group nucleosomal binding domain 3 enables IEA InterPro GO_REF:0000002 NCBI chr 1:86,954,468...86,987,465
Ensembl chr 1:86,954,465...86,987,460 		JBrowse link
G HMGN4 high mobility group nucleosomal binding domain 4 enables IEA InterPro GO_REF:0000002 NCBI chr 7:20,998,913...21,003,138
Ensembl chr 7:20,998,957...21,003,134 		JBrowse link
G HMGN5 high mobility group nucleosome binding domain 5 enables IEA InterPro GO_REF:0000002 NCBI chr  X:64,541,310...64,617,345 JBrowse link
G LOC100359361 high mobility group AT-hook 2-like enables ISS UniProt GO_REF:0000024 NCBI chr 1:191,094,785...191,105,394 JBrowse link
G MACROH2A1 macroH2A.1 histone enables IEA Ensembl GO_REF:0000107 NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,534,138...137,623,886 		JBrowse link
G RCC1 regulator of chromosome condensation 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:85,540,766...85,565,869
Ensembl chr 6:85,546,024...85,565,866 		JBrowse link
G VRK1 VRK serine/threonine kinase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:117,942,929...118,025,991
Ensembl chr 7:117,942,973...118,028,923 		JBrowse link
promoter-enhancer loop anchoring activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHDC1 AT-hook DNA binding motif containing 1 enables ISO (PMID:35585237) UniProt PMID:35585237 NCBI chr 6:84,735,253...84,774,554
Ensembl chr 6:84,735,253...84,802,456 		JBrowse link
G MSL2 MSL complex subunit 2 enables IEA Ensembl GO_REF:0000107 NCBI chr13:77,147,823...77,181,410
Ensembl chr13:77,146,318...77,180,745 		JBrowse link
G PCBP2 poly(rC) binding protein 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:18,670,124...18,703,745
Ensembl chr 5:18,673,981...18,704,978 		JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:54,250,494...54,263,492
Ensembl chr 6:54,250,515...54,266,893 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19428
    binding 16980
      chromatin binding 659
        chromatin DNA binding 119
          chromatin insulator sequence binding 9
          chromatin loop anchoring activity + 5
          nucleosomal DNA binding 17
Path 2
Term Annotations click to browse term
  molecular_function 19428
    binding 16980
      nucleic acid binding 4103
        DNA binding 2152
          chromatin DNA binding 119
            chromatin insulator sequence binding 9
            chromatin loop anchoring activity + 5
            nucleosomal DNA binding 17
paths to the root