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ONTOLOGY REPORT - ANNOTATIONS

Term:chromatin DNA binding
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Accession:GO:0031490 term browser browse the term
Definition:Binding to DNA that is assembled into chromatin.

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chromatin DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn4 actinin alpha 4 enables ISO (PMID:25411248) UniProt PMID:25411248 NCBI chrNW_004624794:12,042,627...12,113,762
Ensembl chrNW_004624794:12,042,533...12,113,886 		JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 enables ISO (PMID:11809897) UniProt PMID:11809897 NCBI chrNW_004624825:4,711,921...4,714,926
Ensembl chrNW_004624825:4,708,093...4,714,921 		JBrowse link
G Atoh1 atonal bHLH transcription factor 1 enables ISO (PMID:15788459) MGI PMID:15788459 NCBI chrNW_004624757:21,517,650...21,519,543
Ensembl chrNW_004624757:21,517,809...21,518,864 		JBrowse link
G Bap1 BRCA1 associated deubiquitinase 1 enables ISO (PMID:22878500) MGI PMID:22878500 NCBI chrNW_004624822:4,809,489...4,818,514
Ensembl chrNW_004624822:4,809,405...4,818,515 		JBrowse link
G Bcl6 BCL6 transcription repressor enables ISO (PMID:17125145) MGI PMID:17125145 NCBI chrNW_004624730:69,145,035...69,167,583
Ensembl chrNW_004624730:69,154,080...69,167,689 		JBrowse link
G Cebpa CCAAT enhancer binding protein alpha enables ISO (PMID:25921091) MGI PMID:25921091 NCBI chrNW_004624794:9,809,007...9,813,418 JBrowse link
G Cebpb CCAAT enhancer binding protein beta enables ISO (PMID:25921091) MGI PMID:25921091 NCBI chrNW_004624790:5,367,808...5,369,686
Ensembl chrNW_004624790:5,368,349...5,369,377 		JBrowse link
G Clock clock circadian regulator enables ISO (PMID:24610784) UniProt PMID:24610784 NCBI chrNW_004624761:13,915,277...14,038,596
Ensembl chrNW_004624761:13,916,653...14,036,164 		JBrowse link
G Crebbp CREB binding protein enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624824:1,516,481...1,655,364
Ensembl chrNW_004624824:1,517,966...1,655,329 		JBrowse link
G Ddx17 DEAD-box helicase 17 enables ISO (PMID:29431742) MGI PMID:29431742 NCBI chrNW_004624752:9,602,267...9,620,770
Ensembl chrNW_004624752:9,602,447...9,620,575 		JBrowse link
G Dhx9 DExH-box helicase 9 enables ISO (PMID:24049074) UniProt PMID:24049074 NCBI chrNW_004624814:10,863,079...10,923,842
Ensembl chrNW_004624814:10,863,337...10,921,075 		JBrowse link
G Eomes eomesodermin enables ISO (PMID:30186101) MGI PMID:30186101 NCBI chrNW_004624788:5,550,569...5,557,342
Ensembl chrNW_004624788:5,550,445...5,557,321 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables ISO (PMID:19734898)
(PMID:18483221), (PMID:24137001)		 UniProt
MGI		 PMID:18483221 PMID:19734898 PMID:24137001 NCBI chrNW_004624800:6,781,848...6,874,221
Ensembl chrNW_004624800:6,802,901...6,874,196 		JBrowse link
G Foxc2 forkhead box C2 enables ISO (PMID:16456100) UniProt PMID:16456100 NCBI chrNW_004624746:2,632,547...2,634,867
Ensembl chrNW_004624746:2,632,619...2,634,085 		JBrowse link
G Foxo1 forkhead box O1 enables ISO (PMID:29320745) MGI PMID:29320745 NCBI chrNW_004624748:1,413,754...1,529,646
Ensembl chrNW_004624748:1,413,983...1,529,992 		JBrowse link
G Foxo3 forkhead box O3 enables ISO (PMID:17521387) UniProt PMID:17521387 NCBI chrNW_004624780:13,621,733...13,740,399
Ensembl chrNW_004624780:13,622,948...13,740,374 		JBrowse link
G Gata1 GATA binding protein 1 enables ISO (PMID:22235304) UniProt PMID:22235304 NCBI chrNW_004624893:595,948...602,980
Ensembl chrNW_004624893:595,967...602,979 		JBrowse link
G Gli2 GLI family zinc finger 2 enables ISO (PMID:23201751) MGI PMID:23201751 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452 		JBrowse link
G Grhl1 grainyhead like transcription factor 1 enables ISO (PMID:21081122) UniProt PMID:21081122 NCBI chrNW_004624865:5,046,030...5,078,545
Ensembl chrNW_004624865:5,046,147...5,078,492 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 enables ISO (PMID:21081122) UniProt PMID:21081122 NCBI chrNW_004624763:18,784,815...18,916,358
Ensembl chrNW_004624763:18,784,187...18,916,358 		JBrowse link
G Grhl3 grainyhead like transcription factor 3 enables ISO (PMID:21081122) UniProt PMID:21081122 NCBI chrNW_004624764:8,753,343...8,783,891
Ensembl chrNW_004624764:8,753,567...8,783,162 		JBrowse link
G H1-1 H1.1 linker histone, cluster member enables ISO (PMID:15911621) UniProt PMID:15911621 NCBI chrNW_004624756:885,994...901,354
Ensembl chrNW_004624756:885,994...886,641 		JBrowse link
G H1-4 H1.4 linker histone, cluster member enables ISO (PMID:15911621) UniProt PMID:15911621 NCBI chrNW_004624756:771,688...772,950
Ensembl chrNW_004624756:772,241...772,903 		JBrowse link
G Hcfc1 host cell factor C1 enables ISO (PMID:22878500) MGI PMID:22878500 NCBI chrNW_004624946:571,776...591,543
Ensembl chrNW_004624946:571,774...590,247 		JBrowse link
G Hdac2 histone deacetylase 2 enables ISO (PMID:18458156) MGI PMID:18458156 NCBI chrNW_004624856:4,834,197...4,861,546
Ensembl chrNW_004624856:4,834,217...4,861,592 		JBrowse link
G Hdac3 histone deacetylase 3 enables ISO (PMID:18458156), (PMID:32467224) MGI PMID:18458156 PMID:32467224 NCBI chrNW_004624774:845,970...864,080
Ensembl chrNW_004624774:845,358...863,809 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISO (PMID:11003645) UniProt PMID:11003645 NCBI chrNW_004624771:14,756,088...14,766,106
Ensembl chrNW_004624771:14,756,100...14,765,832 		JBrowse link
G Hr HR lysine demethylase and nuclear receptor corepressor enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624758:17,699,357...17,719,188
Ensembl chrNW_004624758:17,699,400...17,715,482 		JBrowse link
G Hsf1 heat shock transcription factor 1 enables ISO (PMID:21085490) UniProt PMID:21085490 NCBI chrNW_004624735:12,536,818...12,562,643
Ensembl chrNW_004624735:12,537,128...12,562,644 		JBrowse link
G Insm1 INSM transcriptional repressor 1 enables ISO (PMID:16569215), (PMID:18417529) UniProt PMID:16569215 PMID:18417529 NCBI chrNW_004624741:20,862,835...20,866,176
Ensembl chrNW_004624741:20,863,088...20,864,584 		JBrowse link
G Jmjd1c jumonji domain containing 1C enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624791:306,827...589,134
Ensembl chrNW_004624791:365,726...588,870 		JBrowse link
G Kdm3a lysine demethylase 3A enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624749:16,784,538...16,829,784
Ensembl chrNW_004624749:16,784,538...16,829,365 		JBrowse link
G Kdm3b lysine demethylase 3B enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624743:31,148,051...31,224,896
Ensembl chrNW_004624743:31,148,098...31,225,992 		JBrowse link
G Kdm4d lysine demethylase 4D enables ISO (PMID:6953429) MGI PMID:6953429 NCBI chrNW_004624735:39,640,090...39,695,833 JBrowse link
G Kdm5a lysine demethylase 5A enables ISO (PMID:18483221) MGI PMID:18483221 NCBI chrNW_004624735:8,473,778...8,631,964
Ensembl chrNW_004624735:8,530,016...8,631,954
Ensembl chrNW_004624735:8,530,016...8,631,954 		JBrowse link
G Kdm6a lysine demethylase 6A enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624887:1,065,173...1,279,660
Ensembl chrNW_004624887:1,065,883...1,279,186 		JBrowse link
G Kdm6b lysine demethylase 6B enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624786:10,413,670...10,435,118
Ensembl chrNW_004624786:10,425,816...10,433,806 		JBrowse link
G Klf4 KLF transcription factor 4 enables ISO (PMID:32467224) MGI PMID:32467224 NCBI chrNW_004624758:4,047,217...4,052,257
Ensembl chrNW_004624758:4,047,219...4,051,983 		JBrowse link
G Lemd2 LEM domain nuclear envelope protein 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624754:23,159,234...23,173,452
Ensembl chrNW_004624754:23,158,985...23,173,885 		JBrowse link
G LOC101701243 histone H2A.Z enables ISO (PMID:19834540), (PMID:23637611) UniProt PMID:19834540 PMID:23637611 NCBI chrNW_004624830:7,238,897...7,240,566
Ensembl chrNW_004624830:7,238,929...7,240,563 		JBrowse link
G LOC101706296 core histone macro-H2A.1 enables IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004624733:11,650,067...11,714,399
Ensembl chrNW_004624733:11,650,537...11,715,999 		JBrowse link
G LOC101710779 histone acetyltransferase p300-like enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:7,313,525...7,323,769 JBrowse link
G LOC101711143 histone acetyltransferase p300-like enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:7,335,342...7,340,846 JBrowse link
G LOC101711512 histone acetyltransferase p300 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:7,402,305...7,481,612
Ensembl chrNW_004624752:7,401,848...7,481,696 		JBrowse link
G LOC101712013 core histone macro-H2A.2 enables IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004624754:4,227,897...4,276,595
Ensembl chrNW_004624754:4,227,644...4,279,077 		JBrowse link
G LOC101717518 histone H1.0 enables ISO (PMID:15911621) UniProt PMID:15911621 NCBI chrNW_004624752:10,103,866...10,105,983 JBrowse link
G LOC101720573 DNA polymerase epsilon subunit 3 pseudogene enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:26,532,118...26,551,399 JBrowse link
G LOC106007541 inner nuclear membrane protein Man1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624802:3,085,919...3,156,775
Ensembl chrNW_004624802:3,077,631...3,156,437 		JBrowse link
G LOC110345136 inner nuclear membrane protein Man1-like enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624802:3,077,279...3,078,302 JBrowse link
G LOC110349366 histone acetyltransferase p300-like enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:7,360,302...7,361,958 JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:9038338 RGD:1601325 NCBI chrNW_004624946:620,581...685,339
Ensembl chrNW_004624946:628,284...685,246 		JBrowse link
G Med1 mediator complex subunit 1 ISO RGD PMID:20702579 RGD:5128544 NCBI chrNW_004624795:3,572,025...3,605,675
Ensembl chrNW_004624795:3,572,266...3,607,126 		JBrowse link
G Myod1 myogenic differentiation 1 enables ISO (PMID:25085416) MGI PMID:25085416 NCBI chrNW_004624766:9,345,390...9,347,985
Ensembl chrNW_004624766:9,345,613...9,347,326 		JBrowse link
G Myog myogenin enables ISO (PMID:22847234), (PMID:25085416) MGI PMID:22847234 PMID:25085416 NCBI chrNW_004624807:7,742,926...7,753,149
Ensembl chrNW_004624807:7,749,852...7,753,336 		JBrowse link
G Neurog3 neurogenin 3 enables ISO (PMID:16511571) UniProt PMID:16511571 NCBI chrNW_004624754:3,817,400...3,818,047 JBrowse link
G Nkap NFKB activating protein enables ISO (PMID:20610818) MGI PMID:20610818 NCBI chrNW_004624895:3,840,846...3,849,390 JBrowse link
G Notch1 notch receptor 1 enables ISO (PMID:17658278) MGI PMID:17658278 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531 		JBrowse link
G Nr1h2 nuclear receptor subfamily 1 group H member 2 enables ISO (PMID:29431742) MGI PMID:29431742 NCBI chrNW_004624832:4,136,052...4,141,648
Ensembl chrNW_004624832:4,132,904...4,140,896 		JBrowse link
G Nr1h3 nuclear receptor subfamily 1 group H member 3 enables ISO (PMID:29431742) MGI PMID:29431742 NCBI chrNW_004624767:1,459,601...1,473,224
Ensembl chrNW_004624767:1,459,601...1,467,795 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase enables ISO (PMID:22878500) MGI PMID:22878500 NCBI chrNW_004624903:1,863,110...1,912,299
Ensembl chrNW_004624903:1,863,337...1,910,177 		JBrowse link
G Pax6 paired box 6 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Per1 period circadian regulator 1 enables ISO (PMID:24610784) UniProt PMID:24610784 NCBI chrNW_004624786:10,706,495...10,722,110
Ensembl chrNW_004624786:10,707,075...10,719,859 		JBrowse link
G Pitx2 paired like homeodomain 2 enables ISO (PMID:21035439) MGI PMID:21035439 NCBI chrNW_004624838:4,872,279...4,889,780
Ensembl chrNW_004624838:4,871,511...4,886,384 		JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624760:21,692,734...21,695,636
Ensembl chrNW_004624760:21,692,715...21,695,826 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 enables ISO (PMID:24268575) MGI PMID:24268575 NCBI chrNW_004624754:24,758,055...24,764,723 JBrowse link
G Ppargc1a PPARG coactivator 1 alpha enables ISS UniProt GO_REF:0000024 NCBI chrNW_004624755:7,826,219...8,460,746
Ensembl chrNW_004624755:8,375,596...8,465,297 		JBrowse link
G Prdm14 PR/SET domain 14 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624744:21,092,091...21,121,313
Ensembl chrNW_004624744:21,104,798...21,120,591 		JBrowse link
G Rara retinoic acid receptor alpha enables ISO (PMID:19917671) UniProt PMID:19917671 NCBI chrNW_004624795:2,935,432...2,975,226
Ensembl chrNW_004624795:2,934,731...2,967,232 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:20,732,813...20,742,016
Ensembl chrNW_004624767:20,732,938...20,741,272 		JBrowse link
G Runx2 RUNX family transcription factor 2 enables ISO (PMID:21930712) MGI PMID:21930712 NCBI chrNW_004624754:14,601,574...14,868,469
Ensembl chrNW_004624754:14,679,974...14,867,729 		JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 enables ISO (PMID:23637611) UniProt PMID:23637611 NCBI chrNW_004624832:5,014,484...5,028,868
Ensembl chrNW_004624832:5,014,484...5,028,885 		JBrowse link
G Rxra retinoid X receptor alpha enables ISO (PMID:17952069), (PMID:29431742) MGI PMID:17952069 PMID:29431742 NCBI chrNW_004624760:2,379,809...2,455,749
Ensembl chrNW_004624760:2,380,708...2,456,928 		JBrowse link
G Rxrb retinoid X receptor beta enables ISO (PMID:29431742) MGI PMID:29431742 NCBI chrNW_004624754:23,607,046...23,613,399
Ensembl chrNW_004624754:23,606,955...23,613,508 		JBrowse link
G Sbno1 strawberry notch homolog 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:23,214,619...23,275,928 JBrowse link
G Sbno2 strawberry notch homolog 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:7,479,695...7,532,961
Ensembl chrNW_004624828:7,478,970...7,537,428 		JBrowse link
G Sirt6 sirtuin 6 enables ISO (PMID:33067423) UniProt PMID:33067423 NCBI chrNW_004624828:5,441,973...5,449,549
Ensembl chrNW_004624828:5,442,057...5,451,520 		JBrowse link
G Smad3 SMAD family member 3 enables ISO (PMID:16224064) BHF-UCL PMID:16224064 NCBI chrNW_004624781:5,795,652...5,890,047
Ensembl chrNW_004624781:5,795,652...5,890,371 		JBrowse link
G Sox2 SRY-box transcription factor 2 enables ISO (PMID:24268575) MGI PMID:24268575 NCBI chrNW_004624730:59,570,879...59,573,001
Ensembl chrNW_004624730:59,570,915...59,571,871 		JBrowse link
G Srf serum response factor enables ISO (PMID:18458156) MGI PMID:18458156 NCBI chrNW_004624754:16,371,995...16,381,287 JBrowse link
G Stat3 signal transducer and activator of transcription 3 enables ISO (PMID:17344214) UniProt PMID:17344214 NCBI chrNW_004624795:1,648,235...1,680,788
Ensembl chrNW_004624795:1,648,080...1,681,200 		JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624875:4,425,486...4,477,338
Ensembl chrNW_004624875:4,425,418...4,477,909 		JBrowse link
G Tbr1 T-box brain transcription factor 1 enables ISO (PMID:30186101) MGI PMID:30186101 NCBI chrNW_004624732:4,043,867...4,052,621
Ensembl chrNW_004624732:4,043,867...4,052,551 		JBrowse link
G Thra thyroid hormone receptor alpha enables ISO (PMID:17952069) MGI PMID:17952069 NCBI chrNW_004624795:3,109,663...3,132,494
Ensembl chrNW_004624795:3,108,854...3,132,464 		JBrowse link
G Thrb thyroid hormone receptor beta enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624788:1,950,888...2,348,895
Ensembl chrNW_004624788:1,950,890...2,349,343 		JBrowse link
G Top1 DNA topoisomerase I ISO RGD PMID:1332866 RGD:1580856 NCBI chrNW_004624919:1,668,712...1,756,624
Ensembl chrNW_004624919:1,668,440...1,756,629 		JBrowse link
G Tox thymocyte selection associated high mobility group box enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624744:32,865,781...33,218,453
Ensembl chrNW_004624744:32,865,720...33,218,643 		JBrowse link
G Tox2 TOX high mobility group box family member 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624790:10,339,928...10,467,855
Ensembl chrNW_004624790:10,339,858...10,467,837 		JBrowse link
G Tox3 TOX high mobility group box family member 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624757:4,144,799...4,275,154
Ensembl chrNW_004624757:4,168,672...4,276,392 		JBrowse link
G Tox4 TOX high mobility group box family member 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624825:7,493,911...7,511,852
Ensembl chrNW_004624825:7,493,953...7,511,846 		JBrowse link
G Vax1 ventral anterior homeobox 1 enables ISO (PMID:15905411) MGI PMID:15905411 NCBI chrNW_004624737:29,489,601...29,496,548
Ensembl chrNW_004624737:29,490,936...29,496,483 		JBrowse link
G Vax2 ventral anterior homeobox 2 enables ISO (PMID:15905411) MGI PMID:15905411 NCBI chrNW_004624762:2,480,474...2,508,367
Ensembl chrNW_004624762:2,481,372...2,508,306 		JBrowse link
G Wbp2 WW domain binding protein 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624801:5,737,034...5,745,935
Ensembl chrNW_004624801:5,736,797...5,746,018 		JBrowse link
G Wbp2nl WBP2 N-terminal like enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:6,689,501...6,736,053
Ensembl chrNW_004624752:6,711,843...6,736,018 		JBrowse link
G Xbp1 X-box binding protein 1 enables ISO (PMID:25280941) UniProt PMID:25280941 NCBI chrNW_004624747:5,123,085...5,128,465 JBrowse link
G Zic2 Zic family member 2 enables ISO (PMID:20676059) UniProt PMID:20676059 NCBI chrNW_004624793:11,162,835...11,167,497
Ensembl chrNW_004624793:11,163,916...11,167,457 		JBrowse link
chromatin insulator sequence binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctcf CCCTC-binding factor enables ISO (PMID:17827499) UniProt PMID:17827499 NCBI chrNW_004624746:18,705,017...18,760,345
Ensembl chrNW_004624746:18,706,663...18,760,203 		JBrowse link
chromatin loop anchoring activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctcf CCCTC-binding factor enables ISO (PMID:34856126) FlyBase PMID:34856126 NCBI chrNW_004624746:18,705,017...18,760,345
Ensembl chrNW_004624746:18,706,663...18,760,203 		JBrowse link
nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H1-1 H1.1 linker histone, cluster member enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:885,994...901,354
Ensembl chrNW_004624756:885,994...886,641 		JBrowse link
G Hmga2 high mobility group AT-hook 2 enables ISO (PMID:17078040) UniProt PMID:17078040 NCBI chrNW_004624802:2,337,344...2,468,757
Ensembl chrNW_004624802:2,337,464...2,467,990 		JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624745:24,659,391...24,665,874
Ensembl chrNW_004624745:24,659,334...24,665,221 		JBrowse link
G Hmgn2 high mobility group nucleosomal binding domain 2 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624764:10,477,276...10,480,980 JBrowse link
G Hmgn3 high mobility group nucleosomal binding domain 3 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624819:5,831,031...5,860,249
Ensembl chrNW_004624819:5,830,311...5,860,141 		JBrowse link
G LOC101698172 histone H3.3 enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chrNW_004624801:5,668,661...5,672,164 JBrowse link
G LOC101699418 histone H3.3 enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chrNW_004624807:194,372...203,205 JBrowse link
G LOC101700059 histone H1oo enables ISO (PMID:22868987) UniProt PMID:22868987 NCBI chrNW_004624872:533,877...539,770 JBrowse link
G LOC101701243 histone H2A.Z enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chrNW_004624830:7,238,897...7,240,566
Ensembl chrNW_004624830:7,238,929...7,240,563 		JBrowse link
G LOC101704911 recombination repair protein 1-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624859:252,734...260,277 JBrowse link
G LOC101706296 core histone macro-H2A.1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:11,650,067...11,714,399
Ensembl chrNW_004624733:11,650,537...11,715,999 		JBrowse link
G LOC101712045 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624880:2,510,753...2,512,039 JBrowse link
G LOC101712333 high mobility group nucleosome-binding domain-containing protein 3 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624814:9,437,476...9,437,829 JBrowse link
G LOC101712482 non-histone chromosomal protein HMG-14 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624836:2,459,602...2,459,930 JBrowse link
G LOC101717518 histone H1.0 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:10,103,866...10,105,983 JBrowse link
G LOC101719834 non-histone chromosomal protein HMG-17 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624759:2,335,123...2,335,529 JBrowse link
G LOC101726086 histone H1.0 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624737:3,363,234...3,366,140 JBrowse link
G LOC101726503 high mobility group nucleosome-binding domain-containing protein 4 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624756:332,782...340,670 JBrowse link
G LOC106007871 non-histone chromosomal protein HMG-14-like enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624832:4,392,102...4,393,632 JBrowse link
G Rcc1 regulator of chromosome condensation 1 enables ISO (PMID:17435751) UniProt PMID:17435751 NCBI chrNW_004624764:12,316,976...12,360,673
Ensembl chrNW_004624764:12,326,738...12,362,213 		JBrowse link
G Smarce1 SWI/SNF related BAF chromatin remodeling complex subunit E1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624795:2,712,524...2,730,028
Ensembl chrNW_004624795:2,714,525...2,729,961 		JBrowse link
G Vrk1 VRK serine/threonine kinase 1 enables ISO (PMID:35390161) UniProt PMID:35390161 NCBI chrNW_004624734:6,595,827...6,678,139
Ensembl chrNW_004624734:6,595,814...6,678,081 		JBrowse link
promoter-enhancer loop anchoring activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahdc1 AT-hook DNA binding motif containing 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:11,416,674...11,482,622
Ensembl chrNW_004624764:11,416,674...11,482,601 		JBrowse link
G Msl2 MSL complex subunit 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:12,569,562...12,618,933 JBrowse link
G Pcbp2 poly(rC) binding protein 2 enables ISO (PMID:31361039) FlyBase PMID:31361039 NCBI chrNW_004624904:1,553,253...1,579,212
Ensembl chrNW_004624904:1,555,635...1,578,982 		JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 enables ISO (PMID:23637611) GO_Central PMID:23637611 NCBI chrNW_004624832:5,014,484...5,028,868
Ensembl chrNW_004624832:5,014,484...5,028,885 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 18442
    binding 16096
      chromatin binding 642
        chromatin DNA binding 117
          chromatin insulator sequence binding 1
          chromatin loop anchoring activity + 5
          nucleosomal DNA binding 22
Path 2
Term Annotations click to browse term
  molecular_function 18442
    binding 16096
      nucleic acid binding 3877
        DNA binding 2157
          chromatin DNA binding 117
            chromatin insulator sequence binding 1
            chromatin loop anchoring activity + 5
            nucleosomal DNA binding 22
paths to the root