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ONTOLOGY REPORT - ANNOTATIONS

Term:chromatin DNA binding
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Accession:GO:0031490 term browser browse the term
Definition:Binding to DNA that is assembled into chromatin.


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chromatin DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn4 actinin alpha 4 enables ISO GO_Central GO_REF:0000119 NCBI chr 7:28,592,673...28,661,799
Ensembl chr 7:28,592,673...28,661,765 		JBrowse link
G Apex1 apurinic/apyrimidinic endonuclease 1 enables ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr14:51,162,406...51,164,645
Ensembl chr14:51,162,425...51,164,596 		JBrowse link
G Atoh1 atonal bHLH transcription factor 1 enables IDA (PMID:15788459) MGI PMID:15788459 NCBI chr 6:64,706,109...64,708,229
Ensembl chr 6:64,706,109...64,708,229 		JBrowse link
G Atrx ATRX, chromatin remodeler enables IBA GO_Central GO_REF:0000033 NCBI chr  X:104,841,221...104,972,978
Ensembl chr  X:104,841,221...104,973,009 		JBrowse link
G Bap1 Brca1 associated protein 1 enables IDA (PMID:22878500) MGI PMID:22878500 NCBI chr14:30,973,358...30,981,887
Ensembl chr14:30,973,407...30,981,901 		JBrowse link
G Bcl6 B cell leukemia/lymphoma 6 enables IDA (PMID:17125145) MGI PMID:17125145 NCBI chr16:23,780,058...23,807,602
Ensembl chr16:23,783,802...23,807,602 		JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha enables IDA (PMID:25921091) MGI PMID:25921091 NCBI chr 7:34,818,718...34,821,353
Ensembl chr 7:34,818,718...34,821,353 		JBrowse link
G Cebpb CCAAT/enhancer binding protein beta enables IDA (PMID:25921091) MGI PMID:25921091 NCBI chr 2:167,530,835...167,532,352
Ensembl chr 2:167,530,835...167,532,338 		JBrowse link
G Clock clock circadian regulator enables IDA (PMID:24610784) UniProt PMID:24610784 NCBI chr 5:76,357,715...76,452,675
Ensembl chr 5:76,357,715...76,452,639 		JBrowse link
G Crebbp CREB binding protein enables IBA GO_Central GO_REF:0000033 NCBI chr16:3,899,198...4,031,864
Ensembl chr16:3,899,192...4,031,861 		JBrowse link
G Ddx17 DEAD box helicase 17 enables IDA (PMID:29431742) MGI PMID:29431742 NCBI chr15:79,411,897...79,430,976
Ensembl chr15:79,411,937...79,430,942 		JBrowse link
G Dhx9 DExH-box helicase 9 enables ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 1:153,331,506...153,363,464
Ensembl chr 1:153,331,504...153,363,406 		JBrowse link
G Eomes eomesodermin enables IDA (PMID:30186101) MGI PMID:30186101 NCBI chr 9:118,307,259...118,315,176
Ensembl chr 9:118,307,280...118,315,200 		JBrowse link
G Ep300 E1A binding protein p300 enables ISO
IBA
IDA		 (PMID:18458156) RGD
GO_Central
MGI		 PMID:18458156 PMID:20702579 GO_REF:0000033 GO_REF:0000096 RGD:5128544 NCBI chr15:81,470,329...81,536,273
Ensembl chr15:81,469,552...81,536,278 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables IDA
ISO		 (PMID:18483221), (PMID:24137001) MGI
GO_Central		 PMID:18483221 PMID:24137001 GO_REF:0000119 NCBI chr 6:47,507,208...47,613,843
Ensembl chr 6:47,507,073...47,572,275 		JBrowse link
G Foxc2 forkhead box C2 enables ISO
ISS		 (PMID:9169153) GO_Central
UniProt		 PMID:9169153 GO_REF:0000119 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Foxo1 forkhead box O1 enables IDA (PMID:29320745) MGI PMID:29320745 NCBI chr 3:52,175,758...52,257,530
Ensembl chr 3:52,175,757...52,260,642 		JBrowse link
G Foxo3 forkhead box O3 enables IDA (PMID:17521387) UniProt PMID:17521387 NCBI chr10:42,057,841...42,152,691
Ensembl chr10:42,057,837...42,152,751 		JBrowse link
G Gata1 GATA binding protein 1 enables ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr  X:7,825,504...7,842,844
Ensembl chr  X:7,825,499...7,844,310 		JBrowse link
G Gli2 GLI-Kruppel family member GLI2 enables IDA (PMID:23201751) MGI PMID:23201751 NCBI chr 1:118,761,791...118,987,578
Ensembl chr 1:118,761,862...118,981,349 		JBrowse link
G Grhl1 grainyhead like transcription factor 1 enables ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr12:24,622,234...24,667,390
Ensembl chr12:24,622,282...24,667,390 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 enables ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr15:37,233,065...37,363,813
Ensembl chr15:37,233,280...37,363,813 		JBrowse link
G Grhl3 grainyhead like transcription factor 3 enables ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:135,269,199...135,300,943
Ensembl chr 4:135,269,199...135,300,941 		JBrowse link
G H1f0 H1.0 linker histone enables IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr15:78,912,412...78,914,704
Ensembl chr15:78,912,650...78,914,704 		JBrowse link
G H1f1 H1.1 linker histone, cluster member enables ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr13:23,947,651...23,948,395
Ensembl chr13:23,947,649...23,948,389 		JBrowse link
G H1f2 H1.2 linker histone, cluster member enables IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr13:23,922,790...23,923,514
Ensembl chr13:23,922,791...23,924,350 		JBrowse link
G H1f3 H1.3 linker histone, cluster member enables ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr13:23,739,206...23,739,981
Ensembl chr13:23,737,436...23,744,860 		JBrowse link
G H1f4 H1.4 linker histone, cluster member enables IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr13:23,805,760...23,806,541
Ensembl chr13:23,804,612...23,806,541 		JBrowse link
G H1f5 H1.5 linker histone, cluster member enables IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr13:21,964,002...21,964,795
Ensembl chr13:21,964,053...21,964,795 		JBrowse link
G H2az1 H2A.Z variant histone 1 enables ISO GO_Central GO_REF:0000119 NCBI chr 3:137,570,248...137,572,683
Ensembl chr 3:137,570,248...137,572,683 		JBrowse link
G Hcfc1 host cell factor C1 enables IDA (PMID:22878500) MGI PMID:22878500 NCBI chr  X:72,986,400...73,011,430
Ensembl chr  X:72,986,398...73,009,963 		JBrowse link
G Hdac2 histone deacetylase 2 enables IDA (PMID:18458156) MGI PMID:18458156 NCBI chr10:36,850,293...36,877,885
Ensembl chr10:36,850,540...36,877,885 		JBrowse link
G Hdac3 histone deacetylase 3 enables IDA (PMID:18458156), (PMID:32467224) MGI PMID:18458156 PMID:32467224 NCBI chr18:38,070,024...38,088,073
Ensembl chr18:38,068,897...38,088,069 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 1:178,148,673...178,170,063
Ensembl chr 1:178,148,673...178,165,362 		JBrowse link
G Hr lysine demethylase and nuclear receptor corepressor enables IBA GO_Central GO_REF:0000033 NCBI chr14:70,789,644...70,810,988
Ensembl chr14:70,789,652...70,810,988 		JBrowse link
G Hsf1 heat shock factor 1 enables ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr15:76,361,562...76,385,355
Ensembl chr15:76,361,622...76,386,113 		JBrowse link
G Hsf3 heat shock transcription factor 3 enables IDA (PMID:19864465) MGI PMID:19864465 NCBI chr  X:95,349,781...95,499,900
Ensembl chr  X:95,349,784...95,499,900 		JBrowse link
G Insm1 insulinoma-associated 1 enables ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 2:146,064,021...146,066,940
Ensembl chr 2:146,063,841...146,066,940 		JBrowse link
G Jmjd1c jumonji domain containing 1C enables IBA GO_Central GO_REF:0000033 NCBI chr10:66,932,189...67,092,105
Ensembl chr10:66,931,904...67,092,105 		JBrowse link
G Kdm3a lysine (K)-specific demethylase 3A enables IBA GO_Central GO_REF:0000033 NCBI chr 6:71,565,954...71,609,963
Ensembl chr 6:71,565,956...71,609,974 		JBrowse link
G Kdm3b KDM3B lysine (K)-specific demethylase 3B enables IBA GO_Central GO_REF:0000033 NCBI chr18:34,910,061...34,972,423
Ensembl chr18:34,910,100...34,971,713 		JBrowse link
G Kdm4d lysine (K)-specific demethylase 4D enables IDA (PMID:6953429) MGI PMID:6953429 NCBI chr 9:14,373,844...14,411,818
Ensembl chr 9:14,373,844...14,411,778 		JBrowse link
G Kdm5a lysine demethylase 5A enables IDA (PMID:18483221) MGI PMID:18483221 NCBI chr 6:120,341,060...120,421,535
Ensembl chr 6:120,341,085...120,421,535 		JBrowse link
G Kdm6a lysine (K)-specific demethylase 6A enables IBA
IDA		 (PMID:23658530) GO_Central
MGI		 PMID:23658530 GO_REF:0000033 NCBI chr  X:18,027,101...18,147,061
Ensembl chr  X:18,028,814...18,146,175 		JBrowse link
G Kdm6b KDM1 lysine (K)-specific demethylase 6B enables IBA GO_Central GO_REF:0000033 NCBI chr11:69,289,334...69,311,188
Ensembl chr11:69,289,334...69,304,501 		JBrowse link
G Klf4 Kruppel-like transcription factor 4 (gut) enables IDA (PMID:32467224) MGI PMID:32467224 NCBI chr 4:55,527,137...55,536,984
Ensembl chr 4:55,527,143...55,532,466 		JBrowse link
G Lemd2 LEM domain containing 2 enables IBA GO_Central GO_REF:0000033 NCBI chr17:27,408,574...27,426,228
Ensembl chr17:27,408,574...27,423,443 		JBrowse link
G Lemd3 LEM domain containing 3 enables IBA GO_Central GO_REF:0000033 NCBI chr10:120,759,316...120,815,491
Ensembl chr10:120,759,318...120,815,237 		JBrowse link
G Macroh2a1 macroH2A.1 histone enables ISO GO_Central GO_REF:0000119 NCBI chr13:56,221,435...56,283,439
Ensembl chr13:56,221,432...56,284,174 		JBrowse link
G Macroh2a2 macroH2A.2 histone enables IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr10:61,574,419...61,620,383
Ensembl chr10:61,574,444...61,619,926 		JBrowse link
G Mecp2 methyl CpG binding protein 2 enables ISO
IEA		 RGD
GO_Central
Ensembl		 PMID:9038338 GO_REF:0000096 GO_REF:0000107 RGD:1601325 NCBI chr  X:73,070,198...73,129,296
Ensembl chr  X:73,070,198...73,129,296 		JBrowse link
G Med1 mediator complex subunit 1 enables ISO
IEA		 RGD
GO_Central
Ensembl		 PMID:20702579 GO_REF:0000096 GO_REF:0000107 RGD:5128544 NCBI chr11:98,042,980...98,084,121
Ensembl chr11:98,042,980...98,084,119 		JBrowse link
G Mexis macrophage expressed LXRa(NR1H3)-dependent amplifier of Abca1 transcription lncRNA enables IMP (PMID:29431742) MGI PMID:29431742 NCBI chr 4:53,261,356...53,270,232
Ensembl chr 4:53,261,354...53,339,840 		JBrowse link
G Myod1 myogenic differentiation 1 enables IDA (PMID:25085416) MGI PMID:25085416 NCBI chr 7:46,025,898...46,028,516
Ensembl chr 7:46,025,898...46,028,523 		JBrowse link
G Myog myogenin enables IDA (PMID:22847234), (PMID:25085416) MGI PMID:22847234 PMID:25085416 NCBI chr 1:134,217,742...134,220,286
Ensembl chr 1:134,217,727...134,220,286 		JBrowse link
G Neurog3 neurogenin 3 enables IDA (PMID:16511571) UniProt PMID:16511571 NCBI chr10:61,968,869...61,970,542
Ensembl chr10:61,968,869...61,970,542 		JBrowse link
G Nkap NFKB activating protein enables IDA (PMID:20610818) MGI PMID:20610818 NCBI chr  X:36,390,416...36,414,399
Ensembl chr  X:36,390,448...36,414,399 		JBrowse link
G Notch1 notch 1 enables IDA (PMID:17658278) MGI PMID:17658278 NCBI chr 2:26,347,914...26,393,834
Ensembl chr 2:26,347,915...26,406,675 		JBrowse link
G Nr1h2 nuclear receptor subfamily 1, group H, member 2 enables IDA (PMID:29431742) MGI PMID:29431742 NCBI chr 7:44,199,040...44,204,928
Ensembl chr 7:44,199,040...44,203,375 		JBrowse link
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 enables IMP (PMID:29431742) MGI PMID:29431742 NCBI chr 2:91,014,406...91,033,189
Ensembl chr 2:91,014,406...91,033,179 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) enables IDA (PMID:22878500) MGI PMID:22878500 NCBI chr  X:100,683,617...100,727,957
Ensembl chr  X:100,683,666...100,727,957 		JBrowse link
G Pax6 paired box 6 enables IDA (PMID:30186101) MGI PMID:30186101 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709 		JBrowse link
G Per1 period circadian clock 1 enables IDA (PMID:24610784) UniProt PMID:24610784 NCBI chr11:68,985,934...69,000,791
Ensembl chr11:68,986,043...69,000,786 		JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 enables IDA (PMID:21035439) MGI PMID:21035439 NCBI chr 3:128,993,527...129,013,243
Ensembl chr 3:128,993,527...129,013,240 		JBrowse link
G Pole3 polymerase (DNA directed), epsilon 3 (p17 subunit) enables IBA GO_Central GO_REF:0000033 NCBI chr 4:62,440,889...62,443,305
Ensembl chr 4:62,440,886...62,443,305 		JBrowse link
G Pou5f1 POU domain, class 5, transcription factor 1 enables IDA (PMID:24268575) MGI PMID:24268575 NCBI chr17:35,816,929...35,821,674
Ensembl chr17:35,816,915...35,821,669 		JBrowse link
G Ppargc1a peroxisome proliferative activated receptor, gamma, coactivator 1 alpha enables IDA (PMID:17952069) MGI PMID:17952069 NCBI chr 5:51,611,591...52,273,316
Ensembl chr 5:51,611,592...51,725,068 		JBrowse link
G Prdm14 PR domain containing 14 enables IDA (PMID:24268575) MGI PMID:24268575 NCBI chr 1:13,183,649...13,197,467
Ensembl chr 1:13,183,681...13,197,387 		JBrowse link
G Rara retinoic acid receptor, alpha enables ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rela v-rel reticuloendotheliosis viral oncogene homolog A (avian) enables IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr19:5,686,993...5,698,162
Ensembl chr19:5,687,511...5,698,158 		JBrowse link
G Runx2 runt related transcription factor 2 enables IDA (PMID:21930712) MGI PMID:21930712 NCBI chr17:44,806,873...45,125,518
Ensembl chr17:44,806,874...45,125,684 		JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 enables ISO GO_Central GO_REF:0000119 NCBI chr 7:45,071,320...45,084,817
Ensembl chr 7:45,071,184...45,087,520 		JBrowse link
G Rxra retinoid X receptor alpha enables IDA (PMID:17952069), (PMID:29431742) MGI PMID:17952069 PMID:29431742 NCBI chr 2:27,566,457...27,653,331
Ensembl chr 2:27,566,452...27,652,969 		JBrowse link
G Rxrb retinoid X receptor beta enables IDA (PMID:29431742) MGI PMID:29431742 NCBI chr17:34,250,786...34,257,377
Ensembl chr17:34,250,786...34,257,373 		JBrowse link
G Sbno1 strawberry notch 1 enables IBA GO_Central GO_REF:0000033 NCBI chr 5:124,506,765...124,564,059
Ensembl chr 5:124,506,765...124,564,064 		JBrowse link
G Sbno2 strawberry notch 2 enables IBA GO_Central GO_REF:0000033 NCBI chr10:79,892,826...79,941,942
Ensembl chr10:79,892,826...79,941,405 		JBrowse link
G Sirt6 sirtuin 6 enables ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr10:81,457,621...81,463,631
Ensembl chr10:81,457,619...81,463,631 		JBrowse link
G Smad3 SMAD family member 3 enables IDA (PMID:16224064) BHF-UCL PMID:16224064 NCBI chr 9:63,554,048...63,665,276
Ensembl chr 9:63,554,049...63,665,276 		JBrowse link
G Sox2 SRY (sex determining region Y)-box 2 enables IDA (PMID:24268575) MGI PMID:24268575 NCBI chr 3:34,704,144...34,706,610
Ensembl chr 3:34,704,554...34,706,610 		JBrowse link
G Srf serum response factor enables IDA (PMID:18458156) MGI PMID:18458156 NCBI chr17:46,857,764...46,869,194
Ensembl chr17:46,859,255...46,867,101 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 enables ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:100,777,632...100,830,447
Ensembl chr11:100,775,924...100,830,366 		JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit enables IBA
IDA		 (PMID:18483221) GO_Central
MGI		 PMID:18483221 GO_REF:0000033 NCBI chr11:79,883,932...79,924,949
Ensembl chr11:79,883,932...79,924,949 		JBrowse link
G Tbr1 T-box brain transcription factor 1 enables IDA (PMID:30186101) MGI PMID:30186101 NCBI chr 2:61,633,228...61,644,458
Ensembl chr 2:61,633,274...61,644,458 		JBrowse link
G Thra thyroid hormone receptor alpha enables IDA (PMID:17952069) MGI PMID:17952069 NCBI chr11:98,631,539...98,659,832
Ensembl chr11:98,631,464...98,659,832 		JBrowse link
G Thrb thyroid hormone receptor beta enables IDA (PMID:17952069) MGI PMID:17952069 NCBI chr14:4,429,599...4,810,538
Ensembl chr14:4,431,611...4,809,435 		JBrowse link
G Top1 topoisomerase (DNA) I enables ISO RGD
GO_Central		 PMID:1332866 GO_REF:0000096 RGD:1580856 NCBI chr 2:160,487,901...160,564,684
Ensembl chr 2:160,487,808...160,564,684 		JBrowse link
G Tox thymocyte selection-associated high mobility group box enables IBA
IDA		 (PMID:25527292) GO_Central
UniProt		 PMID:25527292 GO_REF:0000033 NCBI chr 4:6,686,353...6,991,557
Ensembl chr 4:6,686,353...6,991,557 		JBrowse link
G Tox2 TOX high mobility group box family member 2 enables IBA GO_Central GO_REF:0000033 NCBI chr 2:163,045,047...163,166,092
Ensembl chr 2:163,045,045...163,166,090 		JBrowse link
G Tox3 TOX high mobility group box family member 3 enables IBA GO_Central GO_REF:0000033 NCBI chr 8:90,973,665...91,075,746
Ensembl chr 8:90,973,668...91,074,971 		JBrowse link
G Tox4 TOX high mobility group box family member 4 enables IBA GO_Central GO_REF:0000033 NCBI chr14:52,516,603...52,532,966
Ensembl chr14:52,516,603...52,533,858 		JBrowse link
G Uty ubiquitously transcribed tetratricopeptide repeat containing, Y-linked enables IBA GO_Central GO_REF:0000033 NCBI chr  Y:1,085,187...1,245,787
Ensembl chr  Y:1,096,861...1,245,759 		JBrowse link
G Vax1 ventral anterior homeobox 1 enables IDA (PMID:15905411) MGI PMID:15905411 NCBI chr19:59,152,912...59,158,829
Ensembl chr19:59,154,619...59,158,488 		JBrowse link
G Vax2 ventral anterior homeobox 2 enables IDA (PMID:15905411) MGI PMID:15905411 NCBI chr 6:83,688,221...83,715,295
Ensembl chr 6:83,688,246...83,715,295 		JBrowse link
G Wbp2 WW domain binding protein 2 enables IBA
IEA
ISO		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr11:115,969,397...115,977,821
Ensembl chr11:115,969,399...115,977,821 		JBrowse link
G Wbp2nl WBP2 N-terminal like enables IBA GO_Central GO_REF:0000033 NCBI chr15:82,183,126...82,198,848
Ensembl chr15:82,183,155...82,198,824 		JBrowse link
G Xbp1 X-box binding protein 1 enables ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:5,470,641...5,475,993
Ensembl chr11:5,470,659...5,475,893 		JBrowse link
G Zfp125 zinc finger protein 125 enables IDA (PMID:29320745) MGI PMID:29320745 Ensembl chr12:20,948,575...20,952,660 JBrowse link
G Zic2 zinc finger protein of the cerebellum 2 enables IDA (PMID:20676059) UniProt PMID:20676059 NCBI chr14:122,712,796...122,717,740
Ensembl chr14:122,712,847...122,717,264 		JBrowse link
chromatin insulator sequence binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctcf CCCTC-binding factor enables ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 8:106,351,135...106,409,554
Ensembl chr 8:106,363,200...106,409,554 		JBrowse link
G Ctcfl CCCTC-binding factor like enables IBA GO_Central GO_REF:0000033 NCBI chr 2:172,935,402...172,961,318
Ensembl chr 2:172,935,402...172,961,318 		JBrowse link
G Repin1 replication initiator 1 enables IBA GO_Central GO_REF:0000033 NCBI chr 6:48,570,817...48,576,016
Ensembl chr 6:48,570,817...48,576,016 		JBrowse link
G Zfp276 zinc finger protein (C2H2 type) 276 enables IBA GO_Central GO_REF:0000033 NCBI chr 8:123,980,934...123,997,290
Ensembl chr 8:123,980,934...123,996,484 		JBrowse link
G Zfp692 zinc finger protein 692 enables IBA GO_Central GO_REF:0000033 NCBI chr11:58,197,883...58,205,971
Ensembl chr11:58,197,895...58,205,453 		JBrowse link
G Zfx zinc finger protein X-linked enables IBA GO_Central GO_REF:0000033 NCBI chr  X:93,118,237...93,194,250
Ensembl chr  X:93,118,237...93,167,308 		JBrowse link
chromatin loop anchoring activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctcf CCCTC-binding factor enables IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 8:106,351,135...106,409,554
Ensembl chr 8:106,363,200...106,409,554 		JBrowse link
nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H1f0 H1.0 linker histone enables IBA GO_Central GO_REF:0000033 NCBI chr15:78,912,412...78,914,704
Ensembl chr15:78,912,650...78,914,704 		JBrowse link
G H1f1 H1.1 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr13:23,947,651...23,948,395
Ensembl chr13:23,947,649...23,948,389 		JBrowse link
G H1f10 H1.10 linker histone enables IBA GO_Central GO_REF:0000033 NCBI chr 6:87,957,403...87,958,464
Ensembl chr 6:87,957,403...87,958,619 		JBrowse link
G H1f2 H1.2 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr13:23,922,790...23,923,514
Ensembl chr13:23,922,791...23,924,350 		JBrowse link
G H1f3 H1.3 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr13:23,739,206...23,739,981
Ensembl chr13:23,737,436...23,744,860 		JBrowse link
G H1f4 H1.4 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr13:23,805,760...23,806,541
Ensembl chr13:23,804,612...23,806,541 		JBrowse link
G H1f5 H1.5 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr13:21,964,002...21,964,795
Ensembl chr13:21,964,053...21,964,795 		JBrowse link
G H1f6 H1.6 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr13:23,879,794...23,880,528
Ensembl chr13:23,879,797...23,880,708 		JBrowse link
G H1f8 H1.8 linker histone enables IDA
IBA		 (PMID:22868987) UniProt
GO_Central		 PMID:22868987 GO_REF:0000033 NCBI chr 6:115,921,892...115,927,203
Ensembl chr 6:115,921,899...115,927,197 		JBrowse link
G H1f9 H1.9 linker histone enables IBA GO_Central GO_REF:0000033 NCBI chr11:94,858,419...94,859,282
Ensembl chr11:94,858,419...94,859,282 		JBrowse link
G H2az1 H2A.Z variant histone 1 enables IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 3:137,570,248...137,572,683
Ensembl chr 3:137,570,248...137,572,683 		JBrowse link
G H3f3a H3.3 histone A enables ISO GO_Central GO_REF:0000119 NCBI chr 1:180,630,125...180,641,127
Ensembl chr 1:180,628,397...180,641,508 		JBrowse link
G H3f3b H3.3 histone B enables ISO GO_Central GO_REF:0000119 NCBI chr11:115,912,787...115,921,313
Ensembl chr11:115,912,738...115,918,788 		JBrowse link
G H3f5 H3.5 histone enables ISO GO_Central GO_REF:0000119 NCBI chr 4:94,481,887...94,488,556
Ensembl chr 4:94,487,622...94,488,032 		JBrowse link
G Hmga2 high mobility group AT-hook 2 enables ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr10:120,197,173...120,312,374
Ensembl chr10:120,197,180...120,312,374 		JBrowse link
G Hmgn1 high mobility group nucleosomal binding domain 1 enables IEA InterPro GO_REF:0000002 NCBI chr16:95,922,788...95,928,925
Ensembl chr16:95,921,818...95,928,929 		JBrowse link
G Hmgn2 high mobility group nucleosomal binding domain 2 enables IEA InterPro GO_REF:0000002 NCBI chr 4:133,692,050...133,695,302
Ensembl chr 4:133,692,049...133,695,961 		JBrowse link
G Hmgn3 high mobility group nucleosomal binding domain 3 enables IEA InterPro GO_REF:0000002 NCBI chr 9:82,991,995...83,029,411
Ensembl chr 9:82,992,001...83,028,738 		JBrowse link
G Hmgn5 high-mobility group nucleosome binding domain 5 enables IEA InterPro GO_REF:0000002 NCBI chr  X:108,048,143...108,056,986
Ensembl chr  X:108,048,140...108,057,010 		JBrowse link
G Macroh2a1 macroH2A.1 histone enables IDA
ISO		 (PMID:18936163) UniProt
GO_Central		 PMID:18936163 GO_REF:0000119 NCBI chr13:56,221,435...56,283,439
Ensembl chr13:56,221,432...56,284,174 		JBrowse link
G Rcc1 regulator of chromosome condensation 1 enables ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:132,059,230...132,073,061
Ensembl chr 4:132,059,230...132,080,916 		JBrowse link
G Vrk1 vaccinia related kinase 1 enables ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr12:105,976,398...106,044,578
Ensembl chr12:105,976,487...106,043,685
Ensembl chr12:105,976,487...106,043,685 		JBrowse link
promoter-enhancer loop anchoring activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahdc1 AT hook, DNA binding motif, containing 1 enables ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:132,738,797...132,805,421
Ensembl chr 4:132,738,571...132,805,421 		JBrowse link
G Msl2 MSL complex subunit 2 enables IMP (PMID:38030723) UniProt PMID:38030723 NCBI chr 9:100,956,107...100,981,999
Ensembl chr 9:100,956,154...100,981,999 		JBrowse link
G Pcbp2 poly(rC) binding protein 2 enables ISO GO_Central GO_REF:0000119 NCBI chr15:102,378,974...102,408,503
Ensembl chr15:102,378,974...102,408,496 		JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:45,071,320...45,084,817
Ensembl chr 7:45,071,184...45,087,520 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 28796
    binding 17614
      chromatin binding 678
        chromatin DNA binding 121
          chromatin insulator sequence binding 6
          chromatin loop anchoring activity + 5
          nucleosomal DNA binding 22
Path 2
Term Annotations click to browse term
  molecular_function 28796
    binding 17614
      nucleic acid binding 3756
        DNA binding 2357
          chromatin DNA binding 121
            chromatin insulator sequence binding 6
            chromatin loop anchoring activity + 5
            nucleosomal DNA binding 22
paths to the root