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ONTOLOGY REPORT - ANNOTATIONS

Term:chromatin DNA binding
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Accession:GO:0031490 term browser browse the term
Definition:Binding to DNA that is assembled into chromatin.


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chromatin DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN4 actinin alpha 4 enables IDA (PMID:25411248) UniProt PMID:25411248 NCBI chr19:38,647,649...38,731,589
Ensembl chr19:38,647,649...38,731,589 		JBrowse link
G APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 enables IDA (PMID:11809897) UniProt PMID:11809897 NCBI chr14:20,455,226...20,457,767
Ensembl chr14:20,455,191...20,457,772 		JBrowse link
G ATOH1 atonal bHLH transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 4:93,828,753...93,830,964
Ensembl chr 4:93,828,753...93,830,964 		JBrowse link
G ATRX ATRX chromatin remodeler enables IBA GO_Central GO_REF:0000033 NCBI chr  X:77,504,880...77,786,216
Ensembl chr  X:77,504,880...77,786,233 		JBrowse link
G BAP1 BRCA1 associated deubiquitinase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:52,401,008...52,410,008
Ensembl chr 3:52,401,008...52,410,008 		JBrowse link
G BCL6 BCL6 transcription repressor enables IEA Ensembl GO_REF:0000107 NCBI chr 3:187,721,377...187,745,468
Ensembl chr 3:187,721,377...187,745,725 		JBrowse link
G CEBPA CCAAT enhancer binding protein alpha enables IEA Ensembl GO_REF:0000107 NCBI chr19:33,299,934...33,302,534
Ensembl chr19:33,299,934...33,302,534 		JBrowse link
G CEBPB CCAAT enhancer binding protein beta enables IEA Ensembl GO_REF:0000107 NCBI chr20:50,190,583...50,192,690
Ensembl chr20:50,190,734...50,192,690 		JBrowse link
G CLOCK clock circadian regulator enables ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:55,427,903...55,546,909
Ensembl chr 4:55,427,903...55,546,909 		JBrowse link
G CREBBP CREB binding protein enables IBA GO_Central GO_REF:0000033 NCBI chr16:3,725,054...3,880,713
Ensembl chr16:3,725,054...3,880,713 		JBrowse link
G DDX17 DEAD-box helicase 17 enables ISO (PMID:29431742) MGI PMID:29431742 NCBI chr22:38,483,438...38,506,311
Ensembl chr22:38,483,438...38,507,660 		JBrowse link
G DHX9 DExH-box helicase 9 enables IDA (PMID:24049074) UniProt PMID:24049074 NCBI chr 1:182,839,347...182,887,982
Ensembl chr 1:182,839,347...182,887,982 		JBrowse link
G EOMES eomesodermin enables IEA Ensembl GO_REF:0000107 NCBI chr 3:27,715,953...27,722,713
Ensembl chr 3:27,715,949...27,722,711 		JBrowse link
G EP300 E1A binding protein p300 enables ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:20702579 GO_REF:0000033 GO_REF:0000107 RGD:5128544 NCBI chr22:41,092,592...41,180,077
Ensembl chr22:41,092,510...41,180,077 		JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables IDA
IEA		 (PMID:19734898) UniProt
Ensembl		 PMID:19734898 GO_REF:0000107 NCBI chr 7:148,807,383...148,884,291
Ensembl chr 7:148,807,257...148,884,321 		JBrowse link
G FOXC2 forkhead box C2 enables IDA (PMID:16456100) UniProt PMID:16456100 NCBI chr16:86,566,829...86,569,728
Ensembl chr16:86,566,829...86,569,728 		JBrowse link
G FOXO1 forkhead box O1 enables IEA Ensembl GO_REF:0000107 NCBI chr13:40,555,667...40,666,641
Ensembl chr13:40,555,667...40,666,641 		JBrowse link
G FOXO3 forkhead box O3 enables ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:108,559,825...108,684,774
Ensembl chr 6:108,559,835...108,684,774 		JBrowse link
G GATA1 GATA binding protein 1 enables IDA (PMID:22235304) UniProt PMID:22235304 NCBI chr  X:48,786,590...48,794,311
Ensembl chr  X:48,786,540...48,794,311 		JBrowse link
G GLI2 GLI family zinc finger 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:120,735,868...120,992,653
Ensembl chr 2:120,735,623...120,992,653 		JBrowse link
G GRHL1 grainyhead like transcription factor 1 enables IDA (PMID:21081122) UniProt PMID:21081122 NCBI chr 2:9,951,693...10,002,277
Ensembl chr 2:9,951,693...10,002,277 		JBrowse link
G GRHL2 grainyhead like transcription factor 2 enables IDA (PMID:21081122) UniProt PMID:21081122 NCBI chr 8:101,492,439...101,681,200
Ensembl chr 8:101,492,439...101,669,726 		JBrowse link
G GRHL3 grainyhead like transcription factor 3 enables IDA (PMID:21081122) UniProt PMID:21081122 NCBI chr 1:24,319,357...24,364,482
Ensembl chr 1:24,199,558...24,364,482 		JBrowse link
G H1-0 H1.0 linker histone enables IDA (PMID:15911621) UniProt PMID:15911621 NCBI chr22:37,805,229...37,807,432
Ensembl chr22:37,805,229...37,807,432 		JBrowse link
G H1-1 H1.1 linker histone, cluster member enables IMP (PMID:15911621) UniProt PMID:15911621 NCBI chr 6:26,017,032...26,017,787
Ensembl chr 6:26,017,032...26,017,787 		JBrowse link
G H1-2 H1.2 linker histone, cluster member enables IDA (PMID:15911621) UniProt PMID:15911621 NCBI chr 6:26,055,740...26,056,470
Ensembl chr 6:26,054,760...26,056,470 		JBrowse link
G H1-3 H1.3 linker histone, cluster member enables IDA (PMID:15911621) UniProt PMID:15911621 NCBI chr 6:26,234,212...26,234,987
Ensembl chr 6:26,234,212...26,234,987 		JBrowse link
G H1-4 H1.4 linker histone, cluster member enables IMP (PMID:15911621) UniProt PMID:15911621 NCBI chr 6:26,156,329...26,157,115
Ensembl chr 6:26,156,329...26,157,115 		JBrowse link
G H1-5 H1.5 linker histone, cluster member enables IMP (PMID:15911621), (PMID:22956909) UniProt PMID:15911621 PMID:22956909 NCBI chr 6:27,866,792...27,867,588
Ensembl chr 6:27,866,792...27,867,588 		JBrowse link
G H2AZ1 H2A.Z variant histone 1 enables IDA (PMID:19834540), (PMID:23637611) UniProt PMID:19834540 PMID:23637611 NCBI chr 4:99,948,088...99,950,275
Ensembl chr 4:99,948,086...99,950,355 		JBrowse link
G HCFC1 host cell factor C1 enables ISO (PMID:22878500) MGI PMID:22878500 NCBI chr  X:153,947,557...153,971,818
Ensembl chr  X:153,947,557...153,971,818 		JBrowse link
G HDAC2 histone deacetylase 2 enables ISO (PMID:18458156) MGI PMID:18458156 NCBI chr 6:113,933,028...113,971,148
Ensembl chr 6:113,933,028...114,011,308 		JBrowse link
G HDAC3 histone deacetylase 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:141,620,881...141,636,849
Ensembl chr 5:141,620,876...141,636,849 		JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U enables IDA (PMID:11003645) UniProt PMID:11003645 NCBI chr 1:244,850,297...244,864,543
Ensembl chr 1:244,840,638...244,864,560 		JBrowse link
G HR HR lysine demethylase and nuclear receptor corepressor enables IBA GO_Central GO_REF:0000033 NCBI chr 8:22,114,419...22,131,052
Ensembl chr 8:22,114,419...22,133,384 		JBrowse link
G HSF1 heat shock transcription factor 1 enables IDA (PMID:21085490) UniProt PMID:21085490 NCBI chr 8:144,291,604...144,314,720
Ensembl chr 8:144,291,591...144,314,720 		JBrowse link
G INSM1 INSM transcriptional repressor 1 enables IDA (PMID:16569215), (PMID:18417529) UniProt PMID:16569215 PMID:18417529 NCBI chr20:20,368,104...20,370,949
Ensembl chr20:20,368,104...20,370,949 		JBrowse link
G JMJD1C jumonji domain containing 1C enables IBA GO_Central GO_REF:0000033 NCBI chr10:63,167,225...63,521,890
Ensembl chr10:63,167,221...63,521,850 		JBrowse link
G KDM3A lysine demethylase 3A enables IBA GO_Central GO_REF:0000033 NCBI chr 2:86,437,044...86,492,716
Ensembl chr 2:86,440,647...86,492,716 		JBrowse link
G KDM3B lysine demethylase 3B enables IBA GO_Central GO_REF:0000033 NCBI chr 5:138,352,685...138,437,027
Ensembl chr 5:138,352,685...138,437,028 		JBrowse link
G KDM4D lysine demethylase 4D enables IEA Ensembl GO_REF:0000107 NCBI chr11:94,973,709...94,999,519
Ensembl chr11:94,973,709...94,999,519 		JBrowse link
G KDM5A lysine demethylase 5A enables IEA Ensembl GO_REF:0000107 NCBI chr12:280,057...389,320
Ensembl chr12:280,057...389,320 		JBrowse link
G KDM6A lysine demethylase 6A enables IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:44,873,188...45,112,779
Ensembl chr  X:44,873,188...45,112,779 		JBrowse link
G KDM6B lysine demethylase 6B enables IBA GO_Central GO_REF:0000033 NCBI chr17:7,834,217...7,854,796
Ensembl chr17:7,834,217...7,854,796 		JBrowse link
G KLF4 KLF transcription factor 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 9:107,484,852...107,489,769
Ensembl chr 9:107,484,852...107,490,482 		JBrowse link
G MACROH2A1 macroH2A.1 histone enables IDA (PMID:19734898), (PMID:24071584) UniProt PMID:19734898 PMID:24071584 NCBI chr 5:135,334,381...135,399,887
Ensembl chr 5:135,334,381...135,399,914 		JBrowse link
G MACROH2A2 macroH2A.2 histone enables IDA (PMID:19734898) UniProt PMID:19734898 NCBI chr10:70,052,846...70,112,282
Ensembl chr10:70,052,544...70,112,282 		JBrowse link
G MECP2 methyl-CpG binding protein 2 enables ISO
IEA		 RGD
Ensembl		 PMID:9038338 GO_REF:0000107 RGD:1601325 NCBI chr  X:154,021,573...154,097,717
Ensembl chr  X:154,021,573...154,137,103 		JBrowse link
G MED1 mediator complex subunit 1 enables ISO
IEA		 RGD
Ensembl		 PMID:20702579 GO_REF:0000107 RGD:5128544 NCBI chr17:39,404,285...39,451,263
Ensembl chr17:39,404,285...39,451,272 		JBrowse link
G MYOD1 myogenic differentiation 1 enables IEA Ensembl GO_REF:0000107 NCBI chr11:17,719,571...17,722,136
Ensembl chr11:17,719,571...17,722,136 		JBrowse link
G MYOG myogenin enables IEA Ensembl GO_REF:0000107 NCBI chr 1:203,083,129...203,086,012
Ensembl chr 1:203,083,129...203,086,012 		JBrowse link
G NEUROG3 neurogenin 3 enables IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,571,485...69,573,422
Ensembl chr10:69,571,698...69,573,422 		JBrowse link
G NKAP NFKB activating protein enables IEA Ensembl GO_REF:0000107 NCBI chr  X:119,920,672...119,943,751
Ensembl chr  X:119,920,672...119,943,751 		JBrowse link
G NOTCH1 notch receptor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048 		JBrowse link
G NR1H2 nuclear receptor subfamily 1 group H member 2 enables IEA Ensembl GO_REF:0000107 NCBI chr19:50,376,457...50,383,388
Ensembl chr19:50,329,653...50,383,388 		JBrowse link
G NR1H3 nuclear receptor subfamily 1 group H member 3 enables IEA Ensembl GO_REF:0000107 NCBI chr11:47,248,300...47,269,033
Ensembl chr11:47,248,300...47,269,033 		JBrowse link
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase enables IEA Ensembl GO_REF:0000107 NCBI chr  X:71,533,104...71,575,892
Ensembl chr  X:71,533,087...71,575,892 		JBrowse link
G PAX6 paired box 6 enables IEA Ensembl GO_REF:0000107 NCBI chr11:31,789,026...31,817,961
Ensembl chr11:31,784,779...31,817,961 		JBrowse link
G PER1 period circadian regulator 1 enables IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr17:8,140,472...8,152,404
Ensembl chr17:8,140,467...8,156,506 		JBrowse link
G PITX2 paired like homeodomain 2 enables ISO (PMID:21035439) MGI PMID:21035439 NCBI chr 4:110,617,423...110,642,123
Ensembl chr 4:110,617,423...110,642,123 		JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit enables IBA GO_Central GO_REF:0000033 NCBI chr 9:113,407,235...113,410,749
Ensembl chr 9:113,407,235...113,410,675 		JBrowse link
G POU5F1 POU class 5 homeobox 1 enables ISO (PMID:24268575) MGI PMID:24268575 NCBI chr 6:31,164,337...31,170,682
Ensembl chr 6:31,164,337...31,180,731 		JBrowse link
G PPARGC1A PPARG coactivator 1 alpha enables ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:23,792,021...24,472,905
Ensembl chr 4:23,755,041...23,904,089 		JBrowse link
G PRDM14 PR/SET domain 14 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:70,051,651...70,071,252
Ensembl chr 8:70,051,651...70,071,693 		JBrowse link
G RARA retinoic acid receptor alpha enables IDA (PMID:19917671) UniProt PMID:19917671 NCBI chr17:40,309,180...40,357,643
Ensembl chr17:40,309,180...40,357,643 		JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit enables IDA (PMID:25411248) UniProt PMID:25411248 NCBI chr11:65,653,601...65,663,857
Ensembl chr11:65,653,599...65,663,090 		JBrowse link
G RUNX2 RUNX family transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:45,328,330...45,551,082
Ensembl chr 6:45,328,157...45,664,349 		JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 enables IDA (PMID:23637611) UniProt PMID:23637611 NCBI chr19:48,993,448...49,015,995
Ensembl chr19:48,993,562...49,015,970 		JBrowse link
G RXRA retinoid X receptor alpha enables ISO (PMID:17952069), (PMID:29431742) MGI PMID:17952069 PMID:29431742 NCBI chr 9:134,326,455...134,440,585
Ensembl chr 9:134,317,098...134,440,585 		JBrowse link
G RXRB retinoid X receptor beta enables ISO (PMID:29431742) MGI PMID:29431742 NCBI chr 6:33,193,588...33,200,853
Ensembl chr 6:33,193,588...33,200,665 		JBrowse link
G SBNO1 strawberry notch homolog 1 enables IBA GO_Central GO_REF:0000033 NCBI chr12:123,289,109...123,364,847
Ensembl chr12:123,289,109...123,364,847 		JBrowse link
G SBNO2 strawberry notch homolog 2 enables IBA GO_Central GO_REF:0000033 NCBI chr19:1,107,638...1,174,268
Ensembl chr19:1,107,637...1,174,268 		JBrowse link
G SIRT6 sirtuin 6 enables IDA (PMID:33067423) UniProt PMID:33067423 NCBI chr19:4,174,109...4,182,563
Ensembl chr19:4,174,109...4,182,566 		JBrowse link
G SMAD3 SMAD family member 3 enables IEA Ensembl GO_REF:0000107 NCBI chr15:67,065,602...67,195,169
Ensembl chr15:67,063,763...67,195,173 		JBrowse link
G SOX2 SRY-box transcription factor 2 enables ISO (PMID:24268575) MGI PMID:24268575 NCBI chr 3:181,711,925...181,714,436
Ensembl chr 3:181,711,925...181,714,436 		JBrowse link
G SRF serum response factor enables IEA Ensembl GO_REF:0000107 NCBI chr 6:43,171,269...43,181,506
Ensembl chr 6:43,171,269...43,181,506 		JBrowse link
G STAT3 signal transducer and activator of transcription 3 enables IDA (PMID:17344214) UniProt PMID:17344214 NCBI chr17:42,313,324...42,388,442
Ensembl chr17:42,313,324...42,388,568 		JBrowse link
G SUZ12 SUZ12 polycomb repressive complex 2 subunit enables IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr17:31,937,007...32,001,038
Ensembl chr17:31,937,007...32,001,045 		JBrowse link
G TBR1 T-box brain transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:161,416,297...161,425,870
Ensembl chr 2:161,416,297...161,425,870 		JBrowse link
G THRA thyroid hormone receptor alpha enables IEA Ensembl GO_REF:0000107 NCBI chr17:40,062,193...40,093,867
Ensembl chr17:40,058,290...40,093,867 		JBrowse link
G THRB thyroid hormone receptor beta enables IEA Ensembl GO_REF:0000107 NCBI chr 3:24,117,153...24,495,708
Ensembl chr 3:24,117,153...24,495,756 		JBrowse link
G TOP1 DNA topoisomerase I ISO RGD PMID:1332866 RGD:1580856 NCBI chr20:41,028,822...41,124,487
Ensembl chr20:41,028,822...41,124,487 		JBrowse link
G TOX thymocyte selection associated high mobility group box enables ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:58,805,412...59,119,147
Ensembl chr 8:58,805,412...59,119,147 		JBrowse link
G TOX2 TOX high mobility group box family member 2 enables IBA GO_Central GO_REF:0000033 NCBI chr20:43,914,852...44,069,616
Ensembl chr20:43,914,852...44,069,616 		JBrowse link
G TOX3 TOX high mobility group box family member 3 enables IBA GO_Central GO_REF:0000033 NCBI chr16:52,436,416...52,547,802
Ensembl chr16:52,436,417...52,547,802 		JBrowse link
G TOX4 TOX high mobility group box family member 4 enables IBA GO_Central GO_REF:0000033 NCBI chr14:21,477,195...21,499,170
Ensembl chr14:21,476,597...21,499,175 		JBrowse link
G UTY ubiquitously transcribed tetratricopeptide repeat containing, Y-linked enables IBA GO_Central GO_REF:0000033 NCBI chr  Y:13,233,895...13,480,670
Ensembl chr  Y:13,234,577...13,480,673 		JBrowse link
G VAX1 ventral anterior homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chr10:117,128,520...117,138,270
Ensembl chr10:117,128,521...117,138,301 		JBrowse link
G VAX2 ventral anterior homeobox 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:70,900,576...70,933,446
Ensembl chr 2:70,900,576...70,965,373 		JBrowse link
G WBP2 WW domain binding protein 2 enables IMP
IBA		 (PMID:23233354) UniProt
GO_Central		 PMID:23233354 GO_REF:0000033 NCBI chr17:75,845,699...75,856,436
Ensembl chr17:75,845,699...75,856,507 		JBrowse link
G WBP2NL WBP2 N-terminal like enables IBA GO_Central GO_REF:0000033 NCBI chr22:41,998,788...42,058,371
Ensembl chr22:41,998,725...42,058,456 		JBrowse link
G XBP1 X-box binding protein 1 enables IDA (PMID:25280941) UniProt PMID:25280941 NCBI chr22:28,794,560...28,800,569
Ensembl chr22:28,794,555...28,800,597 		JBrowse link
G ZIC2 Zic family member 2 enables ISS UniProt GO_REF:0000024 NCBI chr13:99,981,784...99,986,765
Ensembl chr13:99,981,784...99,986,765 		JBrowse link
chromatin insulator sequence binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTCF CCCTC-binding factor enables IDA (PMID:17827499) UniProt PMID:17827499 NCBI chr16:67,562,526...67,639,185
Ensembl chr16:67,562,467...67,639,177 		JBrowse link
G CTCFL CCCTC-binding factor like enables IBA GO_Central GO_REF:0000033 NCBI chr20:57,495,965...57,525,652
Ensembl chr20:57,495,966...57,525,652 		JBrowse link
G REPIN1 replication initiator 1 enables IBA GO_Central GO_REF:0000033 NCBI chr 7:150,368,096...150,374,039
Ensembl chr 7:150,368,189...150,374,044 		JBrowse link
G ZFX zinc finger protein X-linked enables IBA GO_Central GO_REF:0000033 NCBI chr  X:24,148,982...24,216,255
Ensembl chr  X:24,149,173...24,216,255 		JBrowse link
G ZNF276 zinc finger protein 276 enables IBA GO_Central GO_REF:0000033 NCBI chr16:89,720,368...89,740,925
Ensembl chr16:89,720,400...89,740,925 		JBrowse link
chromatin loop anchoring activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTCF CCCTC-binding factor enables IMP (PMID:34856126) FlyBase PMID:34856126 NCBI chr16:67,562,526...67,639,185
Ensembl chr16:67,562,467...67,639,177 		JBrowse link
nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTB actin beta contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr 7:5,527,148...5,530,601
Ensembl chr 7:5,526,409...5,563,902 		JBrowse link
G ACTL6A actin like 6A contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr 3:179,562,926...179,588,407
Ensembl chr 3:179,562,886...179,588,407 		JBrowse link
G CHD4 chromodomain helicase DNA binding protein 4 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr12:6,570,082...6,607,379
Ensembl chr12:6,570,082...6,614,524 		JBrowse link
G GATAD2B GATA zinc finger domain containing 2B contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr 1:153,804,725...153,922,972
Ensembl chr 1:153,789,030...153,923,360 		JBrowse link
G H1-0 H1.0 linker histone enables IBA GO_Central GO_REF:0000033 NCBI chr22:37,805,229...37,807,432
Ensembl chr22:37,805,229...37,807,432 		JBrowse link
G H1-1 H1.1 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr 6:26,017,032...26,017,787
Ensembl chr 6:26,017,032...26,017,787 		JBrowse link
G H1-10 H1.10 linker histone enables IBA GO_Central GO_REF:0000033 NCBI chr 3:129,314,771...129,316,286
Ensembl chr 3:129,314,771...129,316,286 		JBrowse link
G H1-2 H1.2 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr 6:26,055,740...26,056,470
Ensembl chr 6:26,054,760...26,056,470 		JBrowse link
G H1-3 H1.3 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr 6:26,234,212...26,234,987
Ensembl chr 6:26,234,212...26,234,987 		JBrowse link
G H1-4 H1.4 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr 6:26,156,329...26,157,115
Ensembl chr 6:26,156,329...26,157,115 		JBrowse link
G H1-5 H1.5 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr 6:27,866,792...27,867,588
Ensembl chr 6:27,866,792...27,867,588 		JBrowse link
G H1-6 H1.6 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr 6:26,107,412...26,108,135
Ensembl chr 6:26,107,412...26,108,135 		JBrowse link
G H1-7 H1.7 linker histone enables IBA GO_Central GO_REF:0000033 NCBI chr12:48,328,980...48,330,279
Ensembl chr12:48,328,980...48,330,279 		JBrowse link
G H1-8 H1.8 linker histone enables ISS
IBA		 CAFA
GO_Central		 GO_REF:0000024 GO_REF:0000033 NCBI chr 3:129,543,175...129,551,467
Ensembl chr 3:129,543,175...129,551,467 		JBrowse link
G H1-9P H1.9 linker histone, pseudogene enables IBA GO_Central GO_REF:0000033 NCBI chr17:50,171,428...50,172,476
Ensembl chr17:50,171,514...50,171,936 		JBrowse link
G H2AZ1 H2A.Z variant histone 1 enables IDA (PMID:19633671) UniProt PMID:19633671 NCBI chr 4:99,948,088...99,950,275
Ensembl chr 4:99,948,086...99,950,355 		JBrowse link
G H3-3A H3.3 histone A enables IDA (PMID:19633671) UniProt PMID:19633671 NCBI chr 1:226,061,831...226,072,019
Ensembl chr 1:226,061,851...226,072,019 		JBrowse link
G H3-3B H3.3 histone B enables IDA (PMID:19633671) UniProt PMID:19633671 NCBI chr17:75,776,434...75,779,779
Ensembl chr17:75,776,434...75,785,893 		JBrowse link
G H3-5 H3.5 histone enables IDA (PMID:21274551) UniProt PMID:21274551 NCBI chr12:31,791,185...31,792,298
Ensembl chr12:31,791,185...31,792,298 		JBrowse link
G H3Y1 H3.Y histone 1 enables IDA (PMID:27016736) UniProt PMID:27016736 NCBI chr 5:17,654,868...17,655,849
Ensembl chr 5:17,654,868...17,655,849 		JBrowse link
G HDAC1 histone deacetylase 1 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr 1:32,292,083...32,333,626
Ensembl chr 1:32,292,083...32,333,635 		JBrowse link
G HDAC2 histone deacetylase 2 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr 6:113,933,028...113,971,148
Ensembl chr 6:113,933,028...114,011,308 		JBrowse link
G HMGA2 high mobility group AT-hook 2 enables IDA (PMID:17078040) UniProt PMID:17078040 NCBI chr12:65,824,460...65,966,291
Ensembl chr12:65,824,460...65,966,291 		JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 enables IEA InterPro GO_REF:0000002 NCBI chr21:39,342,315...39,349,088
Ensembl chr21:39,342,315...39,349,647 		JBrowse link
G HMGN2 high mobility group nucleosomal binding domain 2 enables IEA InterPro GO_REF:0000002 NCBI chr 1:26,472,440...26,476,642
Ensembl chr 1:26,472,440...26,478,209 		JBrowse link
G HMGN3 high mobility group nucleosomal binding domain 3 enables IEA InterPro GO_REF:0000002 NCBI chr 6:79,201,245...79,234,682
Ensembl chr 6:79,201,245...79,234,689 		JBrowse link
G HMGN4 high mobility group nucleosomal binding domain 4 enables IEA InterPro GO_REF:0000002 NCBI chr 6:26,538,366...26,546,933
Ensembl chr 6:26,538,366...26,546,933 		JBrowse link
G HMGN5 high mobility group nucleosome binding domain 5 enables IEA InterPro GO_REF:0000002 NCBI chr  X:81,113,699...81,201,913
Ensembl chr  X:81,113,699...81,201,913 		JBrowse link
G HNRNPC heterogeneous nuclear ribonucleoprotein C enables HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr14:21,209,147...21,269,442
Ensembl chr14:21,209,136...21,269,494 		JBrowse link
G MACROH2A1 macroH2A.1 histone enables ISS
IDA
IEA		 (PMID:20008927) UniProt
Ensembl		 PMID:20008927 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:135,334,381...135,399,887
Ensembl chr 5:135,334,381...135,399,914 		JBrowse link
G MBD2 methyl-CpG binding domain protein 2 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr18:54,151,606...54,224,669
Ensembl chr18:54,151,606...54,224,669 		JBrowse link
G MBD3 methyl-CpG binding domain protein 3 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr19:1,573,596...1,592,865
Ensembl chr19:1,573,596...1,592,865 		JBrowse link
G MTA2 metastasis associated 1 family member 2 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr11:62,593,214...62,601,865
Ensembl chr11:62,593,214...62,601,865 		JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr 1:32,651,208...32,686,211
Ensembl chr 1:32,651,142...32,686,211 		JBrowse link
G RCC1 regulator of chromosome condensation 1 enables IDA (PMID:17435751) UniProt PMID:17435751 NCBI chr 1:28,506,043...28,538,989
Ensembl chr 1:28,505,943...28,539,300 		JBrowse link
G SMARCA4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr19:10,961,030...11,062,273
Ensembl chr19:10,960,932...11,079,426 		JBrowse link
G SMARCB1 SWI/SNF related BAF chromatin remodeling complex subunit B1 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr22:23,786,966...23,838,009
Ensembl chr22:23,786,931...23,838,009 		JBrowse link
G SMARCC1 SWI/SNF related BAF chromatin remodeling complex subunit C1 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr 3:47,585,269...47,781,893
Ensembl chr 3:47,585,269...47,782,106 		JBrowse link
G SMARCC2 SWI/SNF related BAF chromatin remodeling complex subunit C2 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr12:56,162,359...56,189,483
Ensembl chr12:56,162,359...56,189,567 		JBrowse link
G SMARCD2 SWI/SNF related BAF chromatin remodeling complex subunit D2 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr17:63,832,081...63,842,685
Ensembl chr17:63,832,081...63,843,065 		JBrowse link
G SMARCE1 SWI/SNF related BAF chromatin remodeling complex subunit E1 contributes_to HDA (PMID:16217013) UniProt PMID:16217013 NCBI chr17:40,624,962...40,647,818
Ensembl chr17:40,624,962...40,648,654 		JBrowse link
G VRK1 VRK serine/threonine kinase 1 enables IDA (PMID:35390161) UniProt PMID:35390161 NCBI chr14:96,797,382...96,881,609
Ensembl chr14:96,797,304...96,954,846 		JBrowse link
promoter-enhancer loop anchoring activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHDC1 AT-hook DNA binding motif containing 1 enables IDA (PMID:35585237) UniProt PMID:35585237 NCBI chr 1:27,534,245...27,604,227
Ensembl chr 1:27,534,035...27,604,431 		JBrowse link
G CASC11 cancer susceptibility 11 enables IMP (PMID:31361039) FlyBase PMID:31361039 NCBI chr 8:127,700,608...127,733,967
Ensembl chr 8:127,686,343...127,739,022 		JBrowse link
G CCAT1 colon cancer associated transcript 1 enables TAS (PMID:31048766) ARUK-UCL PMID:31048766 NCBI chr 8:127,207,382...127,219,268 JBrowse link
G LINC00941 long intergenic non-protein coding RNA 941 enables IMP (PMID:32691935) FlyBase PMID:32691935 NCBI chr12:30,795,681...30,802,711
Ensembl chr12:30,755,167...30,802,602 		JBrowse link
G MSL2 MSL complex subunit 2 enables ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:136,148,917...136,196,335
Ensembl chr 3:136,148,917...136,197,241 		JBrowse link
G PCBP2 poly(rC) binding protein 2 enables IMP (PMID:31361039) FlyBase PMID:31361039 NCBI chr12:53,452,102...53,481,162
Ensembl chr12:53,452,102...53,481,162 		JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 enables IMP (PMID:23637611) GO_Central PMID:23637611 NCBI chr19:48,993,448...49,015,995
Ensembl chr19:48,993,562...49,015,970 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19683
    binding 18143
      chromatin binding 726
        chromatin DNA binding 137
          chromatin insulator sequence binding 5
          chromatin loop anchoring activity + 8
          nucleosomal DNA binding 42
Path 2
Term Annotations click to browse term
  molecular_function 19683
    binding 18143
      nucleic acid binding 4752
        DNA binding 2656
          chromatin DNA binding 137
            chromatin insulator sequence binding 5
            chromatin loop anchoring activity + 8
            nucleosomal DNA binding 42
paths to the root