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ONTOLOGY REPORT - ANNOTATIONS

Term:chromatin DNA binding
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Accession:GO:0031490 term browser browse the term
Definition:Binding to DNA that is assembled into chromatin.

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chromatin DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn4 actinin alpha 4 enables ISO (PMID:25411248) UniProt PMID:25411248 NCBI chrNW_004955468:770,573...841,859
Ensembl chrNW_004955468:770,573...842,209 		JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 enables ISO (PMID:11809897) UniProt PMID:11809897 NCBI chrNW_004955550:1,273,170...1,275,843
Ensembl chrNW_004955550:1,273,284...1,279,743 		JBrowse link
G Atoh1 atonal bHLH transcription factor 1 enables ISO (PMID:15788459) MGI PMID:15788459 NCBI chrNW_004955405:4,461,704...4,462,756
Ensembl chrNW_004955405:4,461,704...4,462,756 		JBrowse link
G Bap1 BRCA1 associated deubiquitinase 1 enables ISO (PMID:22878500) MGI PMID:22878500 NCBI chrNW_004955430:2,391,970...2,400,645
Ensembl chrNW_004955430:2,390,524...2,400,645 		JBrowse link
G Bcl6 BCL6 transcription repressor enables ISO (PMID:17125145) MGI PMID:17125145 NCBI chrNW_004955420:19,998,960...20,021,200
Ensembl chrNW_004955420:19,998,742...20,022,259 		JBrowse link
G Cebpa CCAAT enhancer binding protein alpha enables ISO (PMID:25921091) MGI PMID:25921091 NCBI chrNW_004955468:3,046,544...3,049,217
Ensembl chrNW_004955468:3,047,931...3,049,080 		JBrowse link
G Cebpb CCAAT enhancer binding protein beta enables ISO (PMID:25921091) MGI PMID:25921091 NCBI chrNW_004955445:8,060,432...8,061,289 JBrowse link
G Clock clock circadian regulator enables ISO (PMID:24610784) UniProt PMID:24610784 NCBI chrNW_004955447:15,394,496...15,537,969
Ensembl chrNW_004955447:15,454,630...15,530,906 		JBrowse link
G Ddx17 DEAD-box helicase 17 enables ISO (PMID:29431742) MGI PMID:29431742 NCBI chrNW_004955413:24,646,317...24,664,614
Ensembl chrNW_004955413:24,646,320...24,664,614 		JBrowse link
G Dhx9 DExH-box helicase 9 enables ISO (PMID:24049074) UniProt PMID:24049074 NCBI chrNW_004955406:21,697,813...21,743,551
Ensembl chrNW_004955406:21,697,813...21,745,011 		JBrowse link
G Eomes eomesodermin enables ISO (PMID:30186101) MGI PMID:30186101 NCBI chrNW_004955430:19,280,460...19,287,060
Ensembl chrNW_004955430:19,281,602...19,286,867 		JBrowse link
G Ep300 E1A binding protein p300 enables ISO (PMID:18458156) MGI
RGD		 PMID:18458156 PMID:20702579 RGD:5128544 NCBI chrNW_004955413:26,647,553...26,727,875
Ensembl chrNW_004955413:26,648,339...26,727,933 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables ISO (PMID:19734898)
(PMID:18483221), (PMID:24137001)		 UniProt
MGI		 PMID:18483221 PMID:19734898 PMID:24137001 NCBI chrNW_004955491:4,215,353...4,292,229
Ensembl chrNW_004955491:4,215,298...4,292,235 		JBrowse link
G Foxo1 forkhead box O1 enables ISO (PMID:29320745) MGI PMID:29320745 NCBI chrNW_004955431:5,797,359...5,890,758 JBrowse link
G Foxo3 forkhead box O3 enables ISO (PMID:17521387) UniProt PMID:17521387 NCBI chrNW_004955411:33,655,958...33,770,829
Ensembl chrNW_004955411:33,655,958...33,770,829 		JBrowse link
G Gata1 GATA binding protein 1 enables ISO (PMID:22235304) UniProt PMID:22235304 NCBI chrNW_004955543:334,581...342,042
Ensembl chrNW_004955543:334,061...342,061 		JBrowse link
G Gli2 GLI family zinc finger 2 enables ISO (PMID:23201751) MGI PMID:23201751 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499 		JBrowse link
G Grhl1 grainyhead like transcription factor 1 enables ISO (PMID:21081122) UniProt PMID:21081122 NCBI chrNW_004955487:5,407,187...5,432,828
Ensembl chrNW_004955487:5,407,128...5,433,113 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 enables ISO (PMID:21081122) UniProt PMID:21081122 NCBI chrNW_004955417:26,401,337...26,533,297
Ensembl chrNW_004955417:26,401,363...26,533,297 		JBrowse link
G Grhl3 grainyhead like transcription factor 3 enables ISO (PMID:21081122) UniProt PMID:21081122 NCBI chrNW_004955452:4,125,792...4,159,699
Ensembl chrNW_004955452:4,128,269...4,160,683 		JBrowse link
G H1-1 H1.1 linker histone, cluster member enables ISO (PMID:15911621) UniProt PMID:15911621 NCBI chrNW_004955483:996,019...1,008,034 JBrowse link
G H1-2 H1.2 linker histone, cluster member enables ISO (PMID:15911621) UniProt PMID:15911621 NCBI chrNW_004955483:961,317...962,727
Ensembl chrNW_004955483:961,343...961,984 		JBrowse link
G H1-4 H1.4 linker histone, cluster member enables ISO (PMID:15911621) UniProt PMID:15911621 NCBI chrNW_004955483:870,957...871,724 JBrowse link
G H1-5 H1.5 linker histone, cluster member enables ISO (PMID:15911621), (PMID:22956909) UniProt PMID:15911621 PMID:22956909 NCBI chrNW_004955465:13,390,856...13,391,994
Ensembl chrNW_004955465:13,391,201...13,391,881 		JBrowse link
G Hcfc1 host cell factor C1 enables ISO (PMID:22878500) MGI PMID:22878500 NCBI chrNW_004955580:616,477...636,849
Ensembl chrNW_004955580:616,477...635,597 		JBrowse link
G Hdac2 histone deacetylase 2 enables ISO (PMID:18458156) MGI PMID:18458156 NCBI chrNW_004955526:2,739,099...2,759,640
Ensembl chrNW_004955526:2,728,377...2,759,707 		JBrowse link
G Hdac3 histone deacetylase 3 enables ISO (PMID:18458156), (PMID:32467224) MGI PMID:18458156 PMID:32467224 NCBI chrNW_004955415:12,138,520...12,154,234
Ensembl chrNW_004955415:12,138,870...12,154,234 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISO (PMID:11003645) UniProt PMID:11003645 NCBI chrNW_004955406:8,000,269...8,021,554
Ensembl chrNW_004955406:8,000,269...8,021,554 		JBrowse link
G Hsf1 heat shock transcription factor 1 enables ISO (PMID:21085490) UniProt PMID:21085490 NCBI chrNW_004955454:2,907,265...2,932,352
Ensembl chrNW_004955454:2,907,265...2,932,351 		JBrowse link
G Insm1 INSM transcriptional repressor 1 enables ISO (PMID:16569215), (PMID:18417529) UniProt PMID:16569215 PMID:18417529 NCBI chrNW_004955415:28,396,176...28,398,114 JBrowse link
G Kdm4d lysine demethylase 4D enables ISO (PMID:6953429) MGI PMID:6953429 NCBI chrNW_004955605:7,585...32,650
Ensembl chrNW_004955605:8,977...10,539 		JBrowse link
G Kdm5a lysine demethylase 5A enables ISO (PMID:18483221) MGI PMID:18483221 NCBI chrNW_004955454:6,774,308...6,865,047
Ensembl chrNW_004955454:6,774,476...6,865,033 		JBrowse link
G Kdm6a lysine demethylase 6A enables ISO (PMID:23658530) MGI PMID:23658530 NCBI chrNW_004955516:3,151,350...3,346,832
Ensembl chrNW_004955516:3,149,948...3,346,832 		JBrowse link
G Klf4 KLF transcription factor 4 enables ISO (PMID:32467224) MGI PMID:32467224 NCBI chrNW_004955419:19,280,311...19,284,097
Ensembl chrNW_004955419:19,280,235...19,285,174 		JBrowse link
G LOC102008188 core histone macro-H2A.1 enables ISO (PMID:19734898), (PMID:24071584) UniProt PMID:19734898 PMID:24071584 NCBI chrNW_004955408:30,497,531...30,550,095
Ensembl chrNW_004955408:30,497,531...30,550,118 		JBrowse link
G LOC102010789 histone H1.0 enables ISO (PMID:15911621) UniProt PMID:15911621 NCBI chrNW_004955413:24,182,547...24,184,588 JBrowse link
G LOC102017503 core histone macro-H2A.2 enables ISO (PMID:19734898) UniProt PMID:19734898 NCBI chrNW_004955437:21,126,581...21,186,308
Ensembl chrNW_004955437:21,126,006...21,186,797 		JBrowse link
G LOC102021365 histone H2A.Z enables ISO (PMID:19834540), (PMID:23637611) UniProt PMID:19834540 PMID:23637611 NCBI chrNW_004955496:7,733,910...7,735,525
Ensembl chrNW_004955496:7,733,918...7,735,525 		JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:9038338 RGD:1601325 NCBI chrNW_004955580:674,014...737,586
Ensembl chrNW_004955580:679,109...735,288 		JBrowse link
G Med1 mediator complex subunit 1 ISO RGD PMID:20702579 RGD:5128544 NCBI chrNW_004955451:14,204,326...14,237,809
Ensembl chrNW_004955451:14,202,744...14,237,797 		JBrowse link
G Myod1 myogenic differentiation 1 enables ISO (PMID:25085416) MGI PMID:25085416 NCBI chrNW_004955414:32,523,959...32,526,575
Ensembl chrNW_004955414:32,523,924...32,526,674 		JBrowse link
G Myog myogenin enables ISO (PMID:22847234), (PMID:25085416) MGI PMID:22847234 PMID:25085416 NCBI chrNW_004955406:39,099,044...39,102,479
Ensembl chrNW_004955406:39,099,716...39,102,501 		JBrowse link
G Neurog3 neurogenin 3 enables ISO (PMID:16511571) UniProt PMID:16511571 NCBI chrNW_004955437:21,577,896...21,578,546 JBrowse link
G Nkap NFKB activating protein enables ISO (PMID:20610818) MGI PMID:20610818 NCBI chrNW_004955534:106,122...119,508
Ensembl chrNW_004955534:106,122...119,344 		JBrowse link
G Notch1 notch receptor 1 enables ISO (PMID:17658278) MGI PMID:17658278 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259 		JBrowse link
G Nr1h2 nuclear receptor subfamily 1 group H member 2 enables ISO (PMID:29431742) MGI PMID:29431742 NCBI chrNW_004955559:731,630...736,973
Ensembl chrNW_004955559:730,670...737,505 		JBrowse link
G Nr1h3 nuclear receptor subfamily 1 group H member 3 enables ISO (PMID:29431742) MGI PMID:29431742 NCBI chrNW_004955422:940,310...954,170
Ensembl chrNW_004955422:940,310...949,049 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase enables ISO (PMID:22878500) MGI PMID:22878500 NCBI chrNW_004955475:11,062,258...11,112,252
Ensembl chrNW_004955475:11,062,076...11,114,169 		JBrowse link
G Pax6 paired box 6 enables ISO (PMID:30186101) MGI PMID:30186101 NCBI chrNW_004955476:10,058,979...10,074,668
Ensembl chrNW_004955476:10,058,961...10,074,162 		JBrowse link
G Per1 period circadian regulator 1 enables ISO (PMID:24610784) UniProt PMID:24610784 NCBI chrNW_004955467:8,798,436...8,813,369
Ensembl chrNW_004955467:8,797,912...8,813,365 		JBrowse link
G Pitx2 paired like homeodomain 2 enables ISO (PMID:21035439) MGI PMID:21035439 NCBI chrNW_004955457:15,803,493...15,823,193
Ensembl chrNW_004955457:15,803,219...15,823,310 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 enables ISO (PMID:24268575) MGI PMID:24268575 NCBI chrNW_004955583:995,707...1,003,202 JBrowse link
G Ppargc1a PPARG coactivator 1 alpha enables ISO (PMID:17952069) MGI PMID:17952069 NCBI chrNW_004955480:543,397...1,188,376
Ensembl chrNW_004955480:1,078,322...1,188,435 		JBrowse link
G Prdm14 PR/SET domain 14 enables ISO (PMID:24268575) MGI PMID:24268575 NCBI chrNW_004955444:9,606,310...9,626,772
Ensembl chrNW_004955444:9,612,059...9,626,817 		JBrowse link
G Rara retinoic acid receptor alpha enables ISO (PMID:19917671) UniProt PMID:19917671 NCBI chrNW_004955451:14,876,663...14,917,134
Ensembl chrNW_004955451:14,897,726...14,917,134 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit enables ISO (PMID:25411248) UniProt PMID:25411248 NCBI chrNW_004955422:19,602,930...19,612,263
Ensembl chrNW_004955422:19,603,345...19,611,516 		JBrowse link
G Runx2 RUNX family transcription factor 2 enables ISO (PMID:21930712) MGI PMID:21930712 NCBI chrNW_004955437:10,598,145...10,885,858
Ensembl chrNW_004955437:10,598,145...10,800,560 		JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 enables ISO (PMID:23637611) UniProt PMID:23637611 NCBI chrNW_004955559:1,657,241...1,674,272
Ensembl chrNW_004955559:1,654,059...1,674,272 		JBrowse link
G Rxra retinoid X receptor alpha enables ISO (PMID:17952069), (PMID:29431742) MGI PMID:17952069 PMID:29431742 NCBI chrNW_004955513:3,313,544...3,386,544
Ensembl chrNW_004955513:3,335,897...3,386,994 		JBrowse link
G Rxrb retinoid X receptor beta enables ISO (PMID:29431742) MGI PMID:29431742 NCBI chrNW_004955437:1,767,833...1,774,401
Ensembl chrNW_004955437:1,767,833...1,774,401 		JBrowse link
G Sirt6 sirtuin 6 enables ISO (PMID:33067423) UniProt PMID:33067423 NCBI chrNW_004955495:4,641,883...4,650,518
Ensembl chrNW_004955495:4,644,023...4,650,083 		JBrowse link
G Smad3 SMAD family member 3 enables ISO (PMID:16224064) BHF-UCL PMID:16224064 NCBI chrNW_004955450:8,747,651...8,842,003
Ensembl chrNW_004955450:8,747,651...8,842,136 		JBrowse link
G Sox2 SRY-box transcription factor 2 enables ISO (PMID:24268575) MGI PMID:24268575 NCBI chrNW_004955420:10,671,888...10,674,080
Ensembl chrNW_004955420:10,671,978...10,672,934 		JBrowse link
G Srf serum response factor enables ISO (PMID:18458156) MGI PMID:18458156 NCBI chrNW_004955437:9,100,546...9,109,305
Ensembl chrNW_004955437:9,098,968...9,107,057 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 enables ISO (PMID:17344214) UniProt PMID:17344214 NCBI chrNW_004955451:16,320,326...16,348,505
Ensembl chrNW_004955451:16,319,904...16,357,687 		JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit enables ISO (PMID:18483221) MGI PMID:18483221 NCBI chrNW_004955481:6,867,175...6,917,548
Ensembl chrNW_004955481:6,867,175...6,917,548 		JBrowse link
G Tbr1 T-box brain transcription factor 1 enables ISO (PMID:30186101) MGI PMID:30186101 NCBI chrNW_004955449:12,293,534...12,301,440
Ensembl chrNW_004955449:12,293,601...12,301,272 		JBrowse link
G Thra thyroid hormone receptor alpha enables ISO (PMID:17952069) MGI PMID:17952069 NCBI chrNW_004955451:14,731,746...14,743,545
Ensembl chrNW_004955451:14,731,746...14,744,367 		JBrowse link
G Thrb thyroid hormone receptor beta enables ISO (PMID:17952069) MGI PMID:17952069 NCBI chrNW_004955430:15,992,146...16,322,696
Ensembl chrNW_004955430:15,992,146...16,323,238 		JBrowse link
G Top1 DNA topoisomerase I ISO RGD PMID:1332866 RGD:1580856 NCBI chrNW_004955445:15,834,017...15,922,785
Ensembl chrNW_004955445:15,834,017...15,922,785 		JBrowse link
G Tox thymocyte selection associated high mobility group box enables ISO (PMID:25527292) UniProt PMID:25527292 NCBI chrNW_004955444:19,453,789...19,796,419
Ensembl chrNW_004955444:19,453,783...19,795,167 		JBrowse link
G Vax1 ventral anterior homeobox 1 enables ISO (PMID:15905411) MGI PMID:15905411 NCBI chrNW_004955431:21,853,636...21,857,547
Ensembl chrNW_004955431:21,853,636...21,857,547 		JBrowse link
G Vax2 ventral anterior homeobox 2 enables ISO (PMID:15905411) MGI PMID:15905411 NCBI chrNW_004955424:14,283,336...14,309,809
Ensembl chrNW_004955424:14,283,327...14,309,809 		JBrowse link
G Wbp2 WW domain binding protein 2 enables ISO (PMID:23233354) UniProt PMID:23233354 NCBI chrNW_004955506:6,398,411...6,406,970
Ensembl chrNW_004955506:6,397,541...6,409,290 		JBrowse link
G Xbp1 X-box binding protein 1 enables ISO (PMID:25280941) UniProt PMID:25280941 NCBI chrNW_004955455:3,037,885...3,041,827 JBrowse link
G Zic2 Zic family member 2 enables ISO (PMID:20676059) UniProt PMID:20676059 NCBI chrNW_004955404:10,731,987...10,735,599 JBrowse link
chromatin insulator sequence binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctcf CCCTC-binding factor enables ISO (PMID:17827499) UniProt PMID:17827499 NCBI chrNW_004955484:9,041,226...9,092,924
Ensembl chrNW_004955484:9,042,524...9,064,927 		JBrowse link
chromatin loop anchoring activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctcf CCCTC-binding factor enables ISO (PMID:34856126) FlyBase PMID:34856126 NCBI chrNW_004955484:9,041,226...9,092,924
Ensembl chrNW_004955484:9,042,524...9,064,927 		JBrowse link
nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3f3a H3 histone, family 3A enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chrNW_004955489:269,900...278,398
Ensembl chrNW_004955489:269,900...278,398 		JBrowse link
G H3f3b H3 histone, family 3B enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chrNW_004955506:6,475,336...6,478,781
Ensembl chrNW_004955506:6,474,727...6,482,244 		JBrowse link
G Hmga2 high mobility group AT-hook 2 enables ISO (PMID:17078040) UniProt PMID:17078040 NCBI chrNW_004955458:12,493,790...12,624,805 JBrowse link
G LOC102008188 core histone macro-H2A.1 enables ISO (PMID:20008927)
(PMID:18936163)		 UniProt PMID:18936163 PMID:20008927 NCBI chrNW_004955408:30,497,531...30,550,095
Ensembl chrNW_004955408:30,497,531...30,550,118 		JBrowse link
G LOC102021365 histone H2A.Z enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chrNW_004955496:7,733,910...7,735,525
Ensembl chrNW_004955496:7,733,918...7,735,525 		JBrowse link
G LOC102023622 histone H1oo enables ISO (PMID:22868987) UniProt PMID:22868987 NCBI chrNW_004955429:17,778,193...17,783,307 JBrowse link
G Rcc1 regulator of chromosome condensation 1 enables ISO (PMID:17435751) UniProt PMID:17435751 NCBI chrNW_004955452:7,612,784...7,643,275
Ensembl chrNW_004955452:7,612,784...7,643,275 		JBrowse link
G Vrk1 VRK serine/threonine kinase 1 enables ISO (PMID:35390161) UniProt PMID:35390161 NCBI chrNW_004955438:18,508,915...18,595,104
Ensembl chrNW_004955438:18,508,769...18,595,704 		JBrowse link
promoter-enhancer loop anchoring activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahdc1 AT-hook DNA binding motif containing 1 enables ISO (PMID:35585237) UniProt PMID:35585237 NCBI chrNW_004955452:6,767,250...6,832,989
Ensembl chrNW_004955452:6,767,266...6,832,868 		JBrowse link
G Msl2 MSL complex subunit 2 enables ISO (PMID:38030723) UniProt PMID:38030723 NCBI chrNW_004955501:2,601,424...2,645,341
Ensembl chrNW_004955501:2,601,424...2,645,341 		JBrowse link
G Pcbp2 poly(rC) binding protein 2 enables ISO (PMID:31361039) FlyBase PMID:31361039 NCBI chrNW_004955458:747,770...773,885
Ensembl chrNW_004955458:750,226...773,483 		JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 enables ISO (PMID:23637611) GO_Central PMID:23637611 NCBI chrNW_004955559:1,657,241...1,674,272
Ensembl chrNW_004955559:1,654,059...1,674,272 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 14380
    binding 13664
      chromatin binding 544
        chromatin DNA binding 86
          chromatin insulator sequence binding 1
          chromatin loop anchoring activity + 5
          nucleosomal DNA binding 8
Path 2
Term Annotations click to browse term
  molecular_function 14380
    binding 13664
      nucleic acid binding 1892
        DNA binding 1363
          chromatin DNA binding 86
            chromatin insulator sequence binding 1
            chromatin loop anchoring activity + 5
            nucleosomal DNA binding 8
paths to the root