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ONTOLOGY REPORT - ANNOTATIONS

Term:chromatin DNA binding
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Accession:GO:0031490 term browser browse the term
Definition:Binding to DNA that is assembled into chromatin.


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chromatin DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn4 actinin alpha 4 enables ISO (PMID:25411248) UniProt PMID:25411248 NCBI chr 2:167,039,350...167,108,681 JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 enables ISO (PMID:11809897) UniProt PMID:11809897 NCBI chr12:72,388,388...72,390,548 JBrowse link
G Atoh1 atonal bHLH transcription factor 1 enables ISO (PMID:15788459) MGI PMID:15788459 NCBI chr 6:77,939,477...77,941,402 JBrowse link
G Bap1 BRCA1 associated deubiquitinase 1 enables ISO (PMID:22878500) MGI PMID:22878500 NCBI chr13:6,954,481...6,963,034 JBrowse link
G Bcl6 BCL6 transcription repressor enables ISO (PMID:17125145) MGI PMID:17125145 NCBI chr 4:8,737,904...8,761,176 JBrowse link
G Cebpa CCAAT enhancer binding protein alpha enables ISO (PMID:25921091) MGI PMID:25921091 NCBI chr 2:163,560,712...163,563,479 JBrowse link
G Cebpb CCAAT enhancer binding protein beta enables ISO (PMID:25921091) MGI PMID:25921091 NCBI chr 5:150,315,288...150,316,758 JBrowse link
G Clock clock circadian regulator enables ISO (PMID:24610784) UniProt PMID:24610784 NCBI chr11:32,957,145...33,002,260 JBrowse link
G Dhx9 DExH-box helicase 9 enables ISO (PMID:24049074) UniProt PMID:24049074 NCBI chr10:32,909,365...32,944,570 JBrowse link
G Eomes eomesodermin enables ISO (PMID:30186101) MGI PMID:30186101 NCBI chr 8:109,713,536...109,721,059 JBrowse link
G Ep300 EP300 lysine acetyltransferase enables ISO (PMID:18458156) MGI
RGD		 PMID:18458156 PMID:20702579 RGD:5128544 NCBI chr 1:251,334,176...251,404,863 JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables ISO (PMID:18483221), (PMID:24137001)
(PMID:19734898) 		MGI
UniProt		 PMID:18483221 PMID:19734898 PMID:24137001 NCBI chr 6:93,162,732...93,225,375 JBrowse link
G Foxc2 forkhead box C2 enables ISO (PMID:16456100) UniProt PMID:16456100 NCBI chr17:40,767,543...40,770,231 JBrowse link
G Foxo1 forkhead box O1 enables ISO (PMID:29320745) MGI PMID:29320745 NCBI chr 3:102,101,033...102,175,674 JBrowse link
G Foxo3 forkhead box O3 enables ISO (PMID:17521387) UniProt PMID:17521387 NCBI chr18:41,869,283...41,958,919 JBrowse link
G Gata1 GATA binding protein 1 enables ISO (PMID:22235304) UniProt PMID:22235304 NCBI chr  X:15,363,902...15,367,198 JBrowse link
G Gli2 GLI family zinc finger 2 enables ISO (PMID:23201751) MGI PMID:23201751 NCBI chr10:11,416,793...11,449,759 JBrowse link
G Grhl1 grainyhead like transcription factor 1 enables ISO (PMID:21081122) UniProt PMID:21081122 NCBI chr 7:38,186,149...38,229,942 JBrowse link
G Grhl2 grainyhead like transcription factor 2 enables ISO (PMID:21081122) UniProt PMID:21081122 NCBI chr 1:210,734,885...210,857,307 JBrowse link
G Grhl3 grainyhead like transcription factor 3 enables ISO (PMID:21081122) UniProt PMID:21081122 NCBI chr 1:22,649,880...22,682,436 JBrowse link
G H1-1 H1.1 linker histone, cluster member enables ISO (PMID:15911621) UniProt PMID:15911621 NCBI chr14:42,758,365...42,759,167 JBrowse link
G H1-2 H1.2 linker histone, cluster member enables ISO (PMID:15911621) UniProt PMID:15911621 NCBI chr14:42,732,674...42,734,152 JBrowse link
G Hcfc1 host cell factor C1 enables ISO (PMID:22878500) MGI PMID:22878500 NCBI chr  X:128,562,581...128,634,555 JBrowse link
G Hdac3 histone deacetylase 3 enables ISO (PMID:18458156), (PMID:32467224) MGI PMID:18458156 PMID:32467224 NCBI chr15:6,967,522...6,986,716 JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISO (PMID:11003645) UniProt PMID:11003645 NCBI chr10:56,668,171...56,685,876 JBrowse link
G Hsf1 heat shock transcription factor 1 enables ISO (PMID:21085490) UniProt PMID:21085490 NCBI chr 1:248,809,178...248,834,596 JBrowse link
G Insm1 INSM transcriptional repressor 1 enables ISO (PMID:16569215), (PMID:18417529) UniProt PMID:16569215 PMID:18417529 NCBI chr 5:125,845,298...125,848,343 JBrowse link
G Kdm4d lysine demethylase 4D enables ISO (PMID:6953429) MGI PMID:6953429 NCBI chr 8:10,256,450...10,280,650 JBrowse link
G Kdm5a lysine demethylase 5A enables ISO (PMID:18483221) MGI PMID:18483221 NCBI chr 6:26,314,638...26,391,407 JBrowse link
G Klf4 KLF transcription factor 4 enables ISO (PMID:32467224) MGI PMID:32467224 NCBI chr 1:96,004,619...96,009,625 JBrowse link
G LOC116883258 core histone macro-H2A.1 enables ISO (PMID:19734898), (PMID:24071584) UniProt PMID:19734898 PMID:24071584 NCBI chr14:74,405,158...74,441,548 JBrowse link
G LOC116887018 core histone macro-H2A.2 enables ISO (PMID:19734898) UniProt PMID:19734898 NCBI chr18:27,559,395...27,609,206 JBrowse link
G LOC116896216 histone H2A.Z enables ISO (PMID:19834540), (PMID:23637611) UniProt PMID:19834540 PMID:23637611 NCBI chr 3:21,308,641...21,310,975 JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:9038338 RGD:1601325 NCBI chr  X:128,480,073...128,534,447 JBrowse link
G Med1 mediator complex subunit 1 ISO RGD PMID:20702579 RGD:5128544 NCBI chr 9:56,200,355...56,242,534 JBrowse link
G Myog myogenin enables ISO (PMID:22847234), (PMID:25085416) MGI PMID:22847234 PMID:25085416 NCBI chr10:1,398,177...1,400,805 JBrowse link
G Neurog3 neurogenin 3 enables ISO (PMID:16511571) UniProt PMID:16511571 NCBI chr18:27,957,685...27,959,552 JBrowse link
G Nkap NFKB activating protein enables ISO (PMID:20610818) MGI PMID:20610818 NCBI chr  X:103,305,333...103,327,547 JBrowse link
G Notch1 notch receptor 1 enables ISO (PMID:17658278) MGI PMID:17658278 NCBI chr 5:10,588,654...10,634,419 JBrowse link
G Nr1h2 nuclear receptor subfamily 1 group H member 2 enables ISO (PMID:29431742) MGI PMID:29431742 NCBI chr 2:154,978,803...154,984,188 JBrowse link
G Nr1h3 nuclear receptor subfamily 1 group H member 3 enables ISO (PMID:29431742) MGI PMID:29431742 NCBI chr 5:65,350,155...65,360,751 JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase enables ISO (PMID:22878500) MGI PMID:22878500 NCBI chr  X:58,824,800...58,867,294 JBrowse link
G Pax6 paired box 6 enables ISO (PMID:30186101) MGI PMID:30186101 NCBI chr 5:83,584,609...83,605,766 JBrowse link
G Per1 period circadian regulator 1 enables ISO (PMID:24610784) UniProt PMID:24610784 NCBI chr 9:48,699,910...48,709,309 JBrowse link
G Pitx2 paired like homeodomain 2 enables ISO (PMID:21035439) MGI PMID:21035439 NCBI chr 3:30,098,939...30,118,584 JBrowse link
G Pou5f1 POU class 5 homeobox 1 enables ISO (PMID:24268575) MGI PMID:24268575 NCBI chr18:8,715,922...8,720,452 JBrowse link
G Ppargc1a PPARG coactivator 1 alpha enables ISO (PMID:17952069) MGI PMID:17952069 NCBI chr11:54,020,476...54,669,089 JBrowse link
G Prdm14 PR/SET domain 14 enables ISO (PMID:24268575) MGI PMID:24268575 NCBI chr 1:147,762,841...147,772,982 JBrowse link
G Rara retinoic acid receptor alpha enables ISO (PMID:19917671) UniProt PMID:19917671 NCBI chr 9:55,468,152...55,513,456 JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit enables ISO (PMID:25411248) UniProt PMID:25411248 NCBI chr 2:2,045,437...2,055,534 JBrowse link
G Runx2 RUNX family transcription factor 2 enables ISO (PMID:21930712) MGI PMID:21930712 NCBI chr 4:85,131,698...85,258,574 JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 enables ISO (PMID:23637611) UniProt PMID:23637611 NCBI chr 2:154,074,751...154,087,804 JBrowse link
G Rxra retinoid X receptor alpha enables ISO (PMID:17952069), (PMID:29431742) MGI PMID:17952069 PMID:29431742 NCBI chr 5:8,911,230...8,937,236 JBrowse link
G Rxrb retinoid X receptor beta enables ISO (PMID:29431742) MGI PMID:29431742 NCBI chr18:8,288,378...8,294,517 JBrowse link
G Sirt6 sirtuin 6 enables ISO (PMID:33067423) UniProt PMID:33067423 NCBI chr 1:153,262,840...153,268,176 JBrowse link
G Smad3 SMAD family member 3 enables ISO (PMID:16224064) BHF-UCL PMID:16224064 NCBI chr 8:57,940,009...58,049,107 JBrowse link
G Sox2 SRY-box transcription factor 2 enables ISO (PMID:24268575) MGI PMID:24268575 NCBI chr 3:119,179,925...119,182,383 JBrowse link
G Srf serum response factor enables ISO (PMID:18458156) MGI PMID:18458156 NCBI chr 4:83,307,697...83,316,986 JBrowse link
G Stat3 signal transducer and activator of transcription 3 enables ISO (PMID:17344214) UniProt PMID:17344214 NCBI chr 9:60,177,560...60,203,269 JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit enables ISO (PMID:18483221) MGI PMID:18483221 NCBI chr 9:90,397,288...90,443,204 JBrowse link
G Tbr1 T-box brain transcription factor 1 enables ISO (PMID:30186101) MGI PMID:30186101 NCBI chr 5:39,447,955...39,459,135 JBrowse link
G Thra thyroid hormone receptor alpha enables ISO (PMID:17952069) MGI PMID:17952069 NCBI chr 9:55,671,177...55,694,947 JBrowse link
G Thrb thyroid hormone receptor beta enables ISO (PMID:17952069) MGI PMID:17952069 NCBI chr12:87,040,043...87,133,169 JBrowse link
G Top1 DNA topoisomerase I ISO RGD PMID:1332866 RGD:1580856 NCBI chr 5:139,937,462...140,018,874 JBrowse link
G Tox thymocyte selection associated high mobility group box enables ISO (PMID:25527292) UniProt PMID:25527292 NCBI chr 1:135,357,618...135,508,703 JBrowse link
G Vax1 ventral anterior homeobox 1 enables ISO (PMID:15905411) MGI PMID:15905411 NCBI chr 2:56,938,241...56,943,333 JBrowse link
G Vax2 ventral anterior homeobox 2 enables ISO (PMID:15905411) MGI PMID:15905411 NCBI chr 6:62,512,103...62,536,423 JBrowse link
G Wbp2 WW domain binding protein 2 enables ISO (PMID:23233354) UniProt PMID:23233354 NCBI chr 9:67,972,979...67,981,462 JBrowse link
G Xbp1 X-box binding protein 1 enables ISO (PMID:25280941) UniProt PMID:25280941 NCBI chr11:74,465,840...74,471,293 JBrowse link
G Zic2 Zic family zinc finger 2 enables ISO (PMID:20676059) UniProt PMID:20676059 NCBI chr12:2,412,573...2,417,436 JBrowse link
chromatin insulator sequence binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctcf CCCTC-binding factor enables ISO (PMID:17827499) UniProt PMID:17827499 NCBI chr17:25,368,857...25,417,192 JBrowse link
chromatin loop anchoring activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctcf CCCTC-binding factor enables ISO (PMID:26276636), (PMID:26527277)
(PMID:34856126) 		UniProt
FlyBase		 PMID:26276636 PMID:26527277 PMID:34856126 NCBI chr17:25,368,857...25,417,192 JBrowse link
G Znf143 zinc finger protein 143 NOT|enables ISO (PMID:39708803), (PMID:39708805) UniProt PMID:39708803 PMID:39708805 NCBI chr 2:91,357,212...91,392,595 JBrowse link
nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmga2 high mobility group AT-hook 2 enables ISO (PMID:17078040) UniProt PMID:17078040 NCBI chr 1:198,345,800...198,460,679 JBrowse link
G LOC116883258 core histone macro-H2A.1 enables ISO (PMID:18936163)
(PMID:20008927) 		UniProt PMID:18936163 PMID:20008927 NCBI chr14:74,405,158...74,441,548 JBrowse link
G LOC116896216 histone H2A.Z enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chr 3:21,308,641...21,310,975 JBrowse link
G LOC116904629 histone H1oo enables ISO (PMID:22868987) UniProt PMID:22868987 NCBI chr 6:30,780,568...30,785,635 JBrowse link
G LOC116909029 histone H3.3A enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chr 9:68,035,873...68,038,132 JBrowse link
G LOC116911140 histone H3.3A enables ISO (PMID:19633671) UniProt PMID:19633671 NCBI chr10:59,123,706...59,135,144 JBrowse link
G Rcc1 regulator of chromosome condensation 1 enables ISO (PMID:17435751) UniProt PMID:17435751 NCBI chr 1:25,907,443...25,919,807 JBrowse link
G Vrk1 VRK serine/threonine kinase 1 enables ISO (PMID:35390161) UniProt PMID:35390161 NCBI chr 7:123,660,493...123,723,762 JBrowse link
promoter-enhancer loop anchoring activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahdc1 AT-hook DNA binding motif containing 1 enables ISO (PMID:35585237) UniProt PMID:35585237 NCBI chr 1:25,159,000...25,223,927 JBrowse link
G Msl2 MSL complex subunit 2 enables ISO (PMID:38030723) UniProt PMID:38030723 NCBI chr 8:92,442,834...92,467,286 JBrowse link
G Pcbp2 poly(rC) binding protein 2 enables ISO (PMID:31361039) FlyBase PMID:31361039 NCBI chr 1:260,582,567...260,608,439 JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 enables ISO (PMID:23637611) GO_Central PMID:23637611 NCBI chr 2:154,074,751...154,087,804 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 14076
    binding 13357
      chromatin binding 527
        chromatin DNA binding 81
          chromatin insulator sequence binding 1
          chromatin loop anchoring activity + 6
          nucleosomal DNA binding 8
Path 2
Term Annotations click to browse term
  molecular_function 14076
    binding 13357
      nucleic acid binding 1805
        DNA binding 1312
          chromatin DNA binding 81
            chromatin insulator sequence binding 1
            chromatin loop anchoring activity + 6
            nucleosomal DNA binding 8
paths to the root