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ONTOLOGY REPORT - ANNOTATIONS

Term:pseudopodium organization
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Accession:GO:0031268 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a pseudopodium, a temporary protrusion or retractile process of a cell, associated with cellular movement.
Synonyms:exact_synonym: pseudopodium organisation
 related_synonym: pseudopodium organization and biogenesis


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pseudopodium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab25 RAB25, member RAS oncogene family involved_in ISO
IEA 		(PMID:17925226)
GO_REF:0000107 		RGD
Ensembl		 PMID:17925226 GO_REF:0000107 NCBI chr 2:176,298,124...176,304,221
Ensembl chr 2:174,000,323...174,006,422 		JBrowse link
extension of a leading process involved in cell motility in cerebral cortex radial glia guided migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srgap2 SLIT-ROBO Rho GTPase activating protein 2 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:19737524) 		UniProt
Ensembl
RGD		 PMID:19737524 GO_REF:0000024 GO_REF:0000107 NCBI chr13:45,298,192...45,519,330
Ensembl chr13:42,745,947...42,967,058 		JBrowse link
positive regulation of pseudopodium assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (PMID:17192415) RGD PMID:17192415 NCBI chr18:26,138,382...26,196,021
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
G C3h15orf62 similar to human chromosome 15 open reading frame 62 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:126,618,025...126,621,250
Ensembl chr 3:106,157,382...106,167,831 		JBrowse link
G Ccl21 C-C motif chemokine ligand 21 involved_in ISO
IEA 		(PMID:11242036)
GO_REF:0000107 		RGD
Ensembl		 PMID:11242036 GO_REF:0000107 NCBI chr 5:61,776,411...61,777,515
Ensembl chr 5:56,980,558...56,981,686 		JBrowse link
G Cdc42 cell division cycle 42 involved_in ISO (PMID:11035016) RGD PMID:11035016 NCBI chr 5:154,838,478...154,876,629
Ensembl chr 5:149,553,724...149,593,111 		JBrowse link
G Cdc42ep1 CDC42 effector protein 1 involved_in ISO
IBA
IEA 		(PMID:11035016)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11035016 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:112,275,759...112,283,665
Ensembl chr 7:110,395,332...110,403,200 		JBrowse link
G Cdc42ep2 CDC42 effector protein 2 involved_in ISO
IBA 		(PMID:11035016)
GO_REF:0000033 		RGD
GO_Central		 PMID:11035016 GO_REF:0000033 NCBI chr 1:212,631,317...212,640,231
Ensembl chr 1:203,201,873...203,210,897 		JBrowse link
G Cdc42ep4 CDC42 effector protein 4 involved_in ISO
IBA 		(PMID:11035016)
GO_REF:0000033 		RGD
GO_Central		 PMID:11035016 GO_REF:0000033 NCBI chr10:99,271,750...99,298,551
Ensembl chr10:98,772,495...98,797,695 		JBrowse link
G Cdc42ep5 CDC42 effector protein 5 involved_in ISO (PMID:11035016) RGD PMID:11035016 NCBI chr 1:79,108,036...79,110,550 JBrowse link
G F2rl1 F2R like trypsin receptor 1 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:12821670)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:12821670 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:28,507,003...28,519,954
Ensembl chr 2:26,772,278...26,785,226 		JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase IMP postnatal testicular germ cells RGD PMID:9283007 RGD:2292525 NCBI chr14:32,901,615...32,978,895
Ensembl chr14:32,548,877...32,624,652 		JBrowse link
G Washc1 WASH complex subunit 1 involved_in ISO (PMID:22114305) RGD PMID:22114305 NCBI chr 9:113,169,730...113,179,829
Ensembl chr 9:105,722,899...105,733,009 		JBrowse link
pseudopodium assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl5 C-C motif chemokine ligand 5 involved_in IDA PMID:10477596 BHF-UCL PMID:10477596 RGD:8553666 NCBI chr10:68,820,330...68,824,906
Ensembl chr10:68,322,829...68,327,377 		JBrowse link
G Klhl41 kelch-like family member 41 IMP RGD PMID:10713668 RGD:634002 NCBI chr 3:74,842,118...74,855,244
Ensembl chr 3:54,434,234...54,449,222 		JBrowse link
pseudopodium retraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Septin7 septin 7 acts_upstream_of_or_within ISO (PMID:22232702) RGD PMID:22232702 NCBI chr 8:31,995,597...32,059,069
Ensembl chr 8:23,716,030...23,783,243 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      cellular component organization or biogenesis 7114
        cellular component organization 6827
          cell projection organization 1890
            plasma membrane bounded cell projection organization 1850
              pseudopodium organization 16
                pseudopodium assembly + 14
                pseudopodium retraction + 1
paths to the root