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ONTOLOGY REPORT - ANNOTATIONS

Term:rough endoplasmic reticulum membrane
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Accession:GO:0030867 term browser browse the term
Definition:The lipid bilayer surrounding the rough endoplasmic reticulum.
Synonyms:exact_synonym: RER membrane;   rough ER membrane
 xref: NIF_Subcellular:sao3089754107


show annotations for term's descendants           Sort by:
rough endoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldob aldolase, fructose-bisphosphate B IDA RGD PMID:234468 RGD:2313431 NCBI chr 5:63,889,045...63,902,086
Ensembl chr 5:63,889,046...63,902,116 		JBrowse link
G Ccdc47 coiled-coil domain containing 47 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:91,130,303...91,148,829
Ensembl chr10:91,130,303...91,148,881 		JBrowse link
G Maco1 macoilin 1 located_in
is_active_in		 ISO
IBA
ISS		 (PMID:21589894)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:21589894 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:147,012,416...147,075,265
Ensembl chr 5:147,012,867...147,075,001 		JBrowse link
G Pi4kb phosphatidylinositol 4-kinase beta located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:182,540,377...182,572,684
Ensembl chr 2:182,540,567...182,588,488 		JBrowse link
G Plod1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:158,340,674...158,367,581
Ensembl chr 5:158,340,490...158,367,620 		JBrowse link
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:93,084,548...93,167,255
Ensembl chr 8:93,084,513...93,167,255 		JBrowse link
G Rho rhodopsin IDA RGD PMID:2525480 RGD:6893558 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
G Suco SUN domain containing ossification factor located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:74,192,808...74,257,896
Ensembl chr13:74,193,573...74,257,896 		JBrowse link
G Tmem97 transmembrane protein 97 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:63,438,228...63,447,311
Ensembl chr10:63,438,222...63,589,730 		JBrowse link
G Uba1 ubiquitin-like modifier activating enzyme 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:1376922)		 Ensembl
RGD		 PMID:1376922 GO_REF:0000107 NCBI chr  X:1,508,700...1,530,677
Ensembl chr  X:1,508,666...1,530,636 		JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A located_in ISS
ISO		 GO_REF:0000024
(PMID:26000482)		 UniProt
RGD		 PMID:26000482 GO_REF:0000024 NCBI chr 5:137,376,562...137,385,351
Ensembl chr 5:137,376,564...137,385,351 		JBrowse link
cytoplasmic side of rough endoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alg5 ALG5, dolichyl-phosphate beta-glucosyltransferase is_active_in ISO UniProtKB:P40350 (PMID:10359825) RGD PMID:10359825 NCBI chr 2:138,936,998...138,951,228
Ensembl chr 2:138,936,993...138,951,216 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:11001928)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:11001928 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:5,727,111...5,845,338
Ensembl chr 1:5,727,066...5,920,555 		JBrowse link
G Gnrh1 gonadotropin releasing hormone 1 IDA gonadotropin-releasing hormone-associated peptide RGD PMID:2183089 RGD:9685146 NCBI chr15:41,972,482...41,976,690
Ensembl chr15:41,972,905...41,973,581
Ensembl chr15:41,972,905...41,973,581 		JBrowse link
G Icmt isoprenylcysteine carboxyl methyltransferase located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:162,804,368...162,811,129
Ensembl chr 5:162,804,368...162,811,128 		JBrowse link
G Mgat2 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 6:87,656,360...87,658,849
Ensembl chr 6:87,656,349...87,658,177 		JBrowse link
G Rpl10 ribosomal protein L10 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr  X:152,054,562...152,056,769
Ensembl chr  X:152,054,452...152,056,761 		JBrowse link
G Rpl11 ribosomal protein L11 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:148,274,060...148,277,708
Ensembl chr 5:148,274,069...148,277,599 		JBrowse link
G Rpl23 ribosomal protein L23 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr10:82,771,878...82,775,840
Ensembl chr10:82,771,538...82,775,870 		JBrowse link
G Rpl27 ribosomal protein L27 located_in ISS
ISO		 GO_REF:0000024
(PMID:24930395)		 UniProt
RGD		 PMID:24930395 GO_REF:0000024 NCBI chr10:86,375,511...86,379,210
Ensembl chr10:86,375,454...86,379,193 		JBrowse link
G Rpl29 ribosomal protein L29 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 8:107,068,929...107,070,963
Ensembl chr 8:107,068,480...107,070,914
Ensembl chr12:107,068,480...107,070,914 		JBrowse link
G Rpl31 ribosomal protein L31 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 9:41,647,397...41,651,441
Ensembl chr 9:41,647,426...41,662,129
Ensembl chr 8:41,647,426...41,662,129 		JBrowse link
G Rpl32 ribosomal protein L32 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 4:148,864,048...148,867,612
Ensembl chr 4:148,864,044...148,867,612
Ensembl chr 3:148,864,044...148,867,612 		JBrowse link
G Rpl35 ribosomal protein L35 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 3:22,753,255...22,756,217
Ensembl chr 3:22,753,253...22,756,243 		JBrowse link
G Rpl6 ribosomal protein L6 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr12:35,347,493...35,352,011
Ensembl chr12:35,347,497...35,351,921 		JBrowse link
G Rps15 ribosomal protein S15 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 7:9,416,003...9,417,442
Ensembl chr 7:9,416,004...9,417,450
Ensembl chr 7:9,416,004...9,417,450 		JBrowse link
G Rps16 ribosomal protein S16 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 1:83,643,066...83,646,056
Ensembl chr 1:83,643,130...83,646,206
Ensembl chr19:83,643,130...83,646,206 		JBrowse link
G Rps17 ribosomal protein S17 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 1:135,295,920...135,298,506
Ensembl chr 1:135,295,919...135,298,535
Ensembl chr 8:135,295,919...135,298,535 		JBrowse link
G Rps18 ribosomal protein S18 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr20:4,931,427...4,935,538
Ensembl chr20:4,931,768...4,938,315 		JBrowse link
G Rps20 ribosomal protein S20 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:16,819,095...16,820,476
Ensembl chr 5:16,819,304...16,820,475
Ensembl chr 9:16,819,304...16,820,475
Ensembl chr 3:16,819,304...16,820,475
Ensembl chr 5:16,819,304...16,820,475 		JBrowse link
G Rps21-ps1 ribosomal protein S21, pseudogene 1 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:153,387,133...153,387,476
Ensembl chr 5:153,387,176...153,387,427 		JBrowse link
G Rps23 ribosomal protein S23 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 2:22,079,339...22,080,909
Ensembl chr 2:22,079,302...22,080,918 		JBrowse link
G Rps26 ribosomal protein S26 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 7:1,057,332...1,058,882
Ensembl chr  X:107,822,178...107,822,525 		JBrowse link
G Rps26l5 ribosomal protein S26 like 5 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr  X:107,822,185...107,822,525
Ensembl chr  X:107,822,178...107,822,525 		JBrowse link
G Rps28 ribosomal protein S28 located_in ISS
ISO		 GO_REF:0000024
(PMID:24930395)		 UniProt
RGD		 PMID:24930395 GO_REF:0000024 NCBI chr 7:14,607,801...14,609,170
Ensembl chr 7:14,607,801...14,609,170
Ensembl chr16:14,607,801...14,609,170
Ensembl chr16:14,607,801...14,609,170 		JBrowse link
G Rps29 ribosomal protein S29 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 6:87,635,229...87,636,627
Ensembl chr 6:87,635,230...87,636,636
Ensembl chr13:87,635,230...87,636,636 		JBrowse link
G Rps3 ribosomal protein S3 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 1:153,778,363...153,783,663
Ensembl chr 1:153,777,472...153,783,680 		JBrowse link
G Rpsa ribosomal protein SA located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 8:119,851,225...119,855,103
Ensembl chr 8:119,851,225...119,855,247 		JBrowse link
G Uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr16:18,918,614...18,920,807
Ensembl chr16:18,900,616...18,920,807 		JBrowse link
Sec61 translocon complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6ip1 ARL6 interacting reticulophagy regulator 1 part_of IBA
ISO		 GO_REF:0000033
(PMID:10508919)		 GO_Central
RGD		 PMID:10508919 GO_REF:0000033 NCBI chr 1:172,430,475...172,439,990
Ensembl chr 1:172,430,489...172,439,994 		JBrowse link
G ENSRNOG00000067115 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 2:239,449,978...239,457,959 JBrowse link
G Sec61a1 SEC61 translocon subunit alpha 1 part_of IBA
ISO		 GO_REF:0000033
(PMID:31831667)		 GO_Central
RGD		 PMID:31831667 GO_REF:0000033 NCBI chr 4:120,973,519...120,987,871
Ensembl chr 4:120,960,626...120,987,925 		JBrowse link
G Sec61a2 SEC61 translocon subunit alpha 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:72,407,574...72,445,630
Ensembl chr17:72,407,671...72,434,494 		JBrowse link
G Sec61b SEC61 translocon subunit beta part_of IBA
ISO		 GO_REF:0000033
(PMID:31831667)		 GO_Central
RGD		 PMID:31831667 GO_REF:0000033 NCBI chr 5:61,773,594...61,781,804
Ensembl chr 5:61,773,594...61,781,804 		JBrowse link
G Sec61g Sec61 translocon subunit gamma part_of ISO (PMID:31831667) RGD PMID:31831667 NCBI chr14:90,899,766...90,906,143
Ensembl chr14:90,899,768...90,906,162
Ensembl chr 9:90,899,768...90,906,162 		JBrowse link
G Ssr3 signal sequence receptor subunit 3 NAS RGD PMID:7916687 RGD:61758 NCBI chr 2:149,605,005...149,625,069
Ensembl chr 2:149,605,005...149,625,132 		JBrowse link
G Ssr4 signal sequence receptor subunit 4 IDA RGD PMID:7916687 RGD:61758 NCBI chr  X:151,524,191...151,528,218
Ensembl chr  X:151,524,009...151,528,202 		JBrowse link
Sec62/Sec63 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec63 SEC63 homolog, protein translocation regulator part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:46,245,101...46,314,055
Ensembl chr20:46,245,101...46,314,055 		JBrowse link
signal recognition particle receptor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rp9 RP9, pre-mRNA splicing factor part_of ISO (PMID:15652350) RGD PMID:15652350 NCBI chr 8:20,955,447...21,005,225
Ensembl chr 8:20,941,362...21,005,175 		JBrowse link
G Srpra SRP receptor subunit alpha part_of ISO (PMID:16439358) RGD PMID:16439358 NCBI chr 8:33,560,365...33,566,458
Ensembl chr 8:33,560,348...33,566,470 		JBrowse link
G Srprb SRP receptor subunit beta part_of IBA
ISO		 GO_REF:0000033
(PMID:16439358)		 GO_Central
RGD		 PMID:16439358 GO_REF:0000033 NCBI chr 8:103,768,685...103,782,632 JBrowse link
Ssh1 translocon complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENSRNOG00000064831 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 5:55,583,379...55,585,551 JBrowse link
G LOC134478824 protein transport protein Sec61 subunit gamma-like part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 8:80,709,227...80,709,505 JBrowse link
G Sec61g Sec61 translocon subunit gamma part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:90,899,766...90,906,143
Ensembl chr14:90,899,768...90,906,162
Ensembl chr 9:90,899,768...90,906,162 		JBrowse link
G Sec61g-ps4 Sec61 translocon subunit gamma, pseudogene 4 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:113,427,370...113,427,696
Ensembl chr  X:113,427,440...113,427,646 		JBrowse link
G Sec61gl2 Sec61 translocon subunit gamma like 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:75,638,449...75,638,655
Ensembl chr17:75,638,449...75,638,655 		JBrowse link
G Sec61gl4 SEC61 translocon subunit gamma like 4 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:41,302,673...41,303,608 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21321
    cellular anatomical structure 21026
      organelle subcompartment 1416
        endoplasmic reticulum subcompartment 1114
          endoplasmic reticulum membrane 1104
            rough endoplasmic reticulum membrane 56
              cytoplasmic side of rough endoplasmic reticulum membrane 28
              endoplasmic reticulum Sec complex + 1
              lumenal side of rough endoplasmic reticulum membrane 0
              signal recognition particle receptor complex 3
              translocon complex + 13
Path 2
Term Annotations click to browse term
  cellular_component 21321
    cellular anatomical structure 21026
      intracellular anatomical structure 15547
        intracellular organelle 13828
          intracellular membrane-bounded organelle 12253
            endoplasmic reticulum 1893
              endoplasmic reticulum subcompartment 1114
                endoplasmic reticulum membrane 1104
                  rough endoplasmic reticulum membrane 56
                    cytoplasmic side of rough endoplasmic reticulum membrane 28
                    endoplasmic reticulum Sec complex + 1
                    lumenal side of rough endoplasmic reticulum membrane 0
                    signal recognition particle receptor complex 3
                    translocon complex + 13
paths to the root