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ONTOLOGY REPORT - ANNOTATIONS

Term:collagen catabolic process
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Accession:GO:0030574 term browser browse the term
Definition:The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells.
Synonyms:exact_synonym: collagen breakdown;   collagen catabolism;   collagen degradation
 xref: Reactome:R-HSA-1442490 "Collagen degradation"


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collagen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam15 ADAM metallopeptidase domain 15 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:177,052,363...177,062,879
Ensembl chr 2:174,754,633...174,765,113 		JBrowse link
G Ctsb cathepsin B involved_in ISO
IEA		 (PMID:22952693)
GO_REF:0000107		 RGD
Ensembl		 PMID:22952693 GO_REF:0000107 NCBI chr15:41,565,607...41,586,479
Ensembl chr15:37,389,629...37,410,500 		JBrowse link
G Ctsk cathepsin K involved_in
acts_upstream_of_or_within		 ISO (PMID:22952693)
(PMID:19834056)
MGI:2182131 (PMID:19834056)		 RGD PMID:19834056 PMID:22952693 NCBI chr 2:185,747,548...185,758,512
Ensembl chr 2:183,058,569...183,069,550 		JBrowse link
G Ctsl cathepsin L involved_in ISO
ISS		 (PMID:10716919), (PMID:22952693)
GO_REF:0000024		 RGD
UniProt		 PMID:10716919 PMID:22952693 GO_REF:0000024 NCBI chr17:770,104...776,266
Ensembl chr17:764,309...770,548 		JBrowse link
G Ctss cathepsin S involved_in ISO (PMID:22952693) RGD PMID:22952693 NCBI chr 2:185,775,316...185,803,440
Ensembl chr 2:183,086,437...183,114,483 		JBrowse link
G Mmp1 matrix metallopeptidase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:12,943,453...12,963,966
Ensembl chr 8:4,658,588...4,679,097 		JBrowse link
G Mmp10 matrix metallopeptidase 10 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000043		 GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000043 NCBI chr 8:12,974,707...12,982,613
Ensembl chr 8:4,689,840...4,697,748 		JBrowse link
G Mmp11 matrix metallopeptidase 11 involved_in
acts_upstream_of_or_within		 IBA
ISO
IEA		 GO_REF:0000033
(PMID:18622425)
GO_REF:0000107
GO_REF:0000043		 GO_Central
RGD
Ensembl
UniProt		 PMID:18622425 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 NCBI chr20:12,730,284...12,739,067
Ensembl chr20:12,730,836...12,739,628 		JBrowse link
G Mmp12 matrix metallopeptidase 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:12,866,652...12,876,554
Ensembl chr 8:4,581,785...4,599,611 		JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in
acts_upstream_of_or_within		 ISO
ISS
IEA
IBA		 (PMID:8576151), (PMID:9065415)
GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
(PMID:15563592)
(PMID:17987127)
GO_REF:0000043		 RGD
UniProt
Ensembl
GO_Central		 PMID:8576151 PMID:9065415 PMID:15563592 PMID:17987127 GO_REF:0000024 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 NCBI chr 8:12,782,829...12,793,108
Ensembl chr 8:4,497,960...4,508,239 		JBrowse link
G Mmp14 matrix metallopeptidase 14 involved_in
acts_upstream_of_or_within		 IBA
ISO
IEA		 GO_REF:0000033
MGI:1276107 (PMID:18022611)
GO_REF:0000107		 GO_Central
RGD
Ensembl		 PMID:18022611 GO_REF:0000033 GO_REF:0000107 NCBI chr15:31,857,824...31,867,049
Ensembl chr15:27,887,727...27,899,864 		JBrowse link
G Mmp15 matrix metallopeptidase 15 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:9,669,506...9,691,000
Ensembl chr19:9,663,449...9,684,943 		JBrowse link
G Mmp16 matrix metallopeptidase 16 involved_in
acts_upstream_of_or_within		 IBA
ISO
IEA		 GO_REF:0000033
MGI:101900 (PMID:18022611)
GO_REF:0000043
GO_REF:0000107		 GO_Central
RGD
UniProt
Ensembl		 PMID:18022611 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 NCBI chr 5:36,109,265...36,353,252
Ensembl chr 5:31,312,280...31,548,388 		JBrowse link
G Mmp17 matrix metallopeptidase 17 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:27,074,398...27,099,317
Ensembl chr12:27,074,409...27,099,316 		JBrowse link
G Mmp1b matrix metallopeptidase 1b (interstitial collagenase) involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000043		 GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000043 NCBI chr 8:4,598,326...4,606,965
Ensembl chr 8:4,598,391...4,606,965 		JBrowse link
G Mmp2 matrix metallopeptidase 2 involved_in
acts_upstream_of_or_within		 IDA
IEA
IBA
ISO		 GO_REF:0000043
GO_REF:0000033
MGI:2386252 (PMID:17440987)
GO_REF:0000107		 UniProt
GO_Central
RGD
Ensembl		 PMID:17440987 PMID:22410640 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107, RGD:7207278 NCBI chr19:30,327,643...30,355,856
Ensembl chr19:14,154,657...14,182,870 		JBrowse link
G Mmp20 matrix metallopeptidase 20 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:13,074,279...13,114,894
Ensembl chr 8:4,789,415...4,830,035 		JBrowse link
G Mmp21 matrix metallopeptidase 21 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:197,910,178...197,915,847
Ensembl chr 1:188,480,186...188,485,855 		JBrowse link
G Mmp23 matrix metallopeptidase 23 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:171,521,905...171,525,007
Ensembl chr 5:166,239,644...166,242,433 		JBrowse link
G Mmp24 matrix metallopeptidase 24 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:144,279,096...144,323,572
Ensembl chr 3:144,279,096...144,323,572 		JBrowse link
G Mmp25 matrix metallopeptidase 25 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:13,164,974...13,180,503
Ensembl chr10:12,661,208...12,675,871 		JBrowse link
G Mmp27 matrix metallopeptidase 27 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:13,030,752...13,040,671
Ensembl chr 8:4,745,883...4,755,806 		JBrowse link
G Mmp28 matrix metallopeptidase 28 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:68,738,651...68,762,377
Ensembl chr10:68,241,138...68,264,866 		JBrowse link
G Mmp3 matrix metallopeptidase 3 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000043		 GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000043 NCBI chr 8:12,925,267...12,938,828
Ensembl chr 8:4,640,416...4,653,961 		JBrowse link
G Mmp7 matrix metallopeptidase 7 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000043		 GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000043 NCBI chr 8:13,133,043...13,140,761
Ensembl chr 8:4,848,186...4,855,902 		JBrowse link
G Mmp8 matrix metallopeptidase 8 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000043		 GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000043 NCBI chr 8:13,008,873...13,018,729
Ensembl chr 8:4,724,029...4,733,520 		JBrowse link
G Mmp9 matrix metallopeptidase 9 involved_in
acts_upstream_of_or_within		 IDA
IEA
IBA
ISO		 GO_REF:0000043
GO_REF:0000033
(PMID:9291580)
GO_REF:0000107		 UniProt
GO_Central
RGD
Ensembl		 PMID:9291580 PMID:22410640 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107, RGD:7207278 NCBI chr 3:174,103,474...174,111,434
Ensembl chr 3:153,683,858...153,692,120 		JBrowse link
G Mrc2 mannose receptor, C type 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:12972549)		 Ensembl
RGD		 PMID:12972549 GO_REF:0000107 NCBI chr10:90,761,751...90,823,055
Ensembl chr10:90,261,394...90,322,856 		JBrowse link
G Pepd peptidase D involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:96,673,624...96,818,197
Ensembl chr 1:87,536,609...87,681,231 		JBrowse link
G Prss2 protease, serine, 2 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 4:71,244,964...71,250,043
Ensembl chr 4:70,278,304...70,283,385 		JBrowse link
G Retreg1 reticulophagy regulator 1 acts_upstream_of_or_within ISO (PMID:34338405) RGD PMID:34338405 NCBI chr 2:78,045,435...78,205,316
Ensembl chr 2:76,335,609...76,493,898 		JBrowse link
G Retreg2 reticulophagy regulator family member 2 acts_upstream_of_or_within ISO
IEA		 (PMID:34338405)
GO_REF:0000107		 RGD
Ensembl		 PMID:34338405 GO_REF:0000107 NCBI chr 9:84,088,935...84,095,072
Ensembl chr 9:76,640,319...76,646,395 		JBrowse link
G Retreg3 reticulophagy regulator family member 3 acts_upstream_of_or_within ISO
IEA		 (PMID:34338405)
GO_REF:0000107		 RGD
Ensembl		 PMID:34338405 GO_REF:0000107 NCBI chr10:86,028,767...86,052,575
Ensembl chr10:86,028,774...86,052,692 		JBrowse link
negative regulation of collagen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cst3 cystatin C involved_in ISO (PMID:10545518) RGD PMID:10545518 NCBI chr 3:156,790,061...156,794,116
Ensembl chr 3:136,336,920...136,340,822 		JBrowse link
positive regulation of collagen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idua alpha-L-iduronidase acts_upstream_of_or_within ISO MGI:2176236 (PMID:19834056) RGD PMID:19834056 NCBI chr14:1,175,994...1,203,913
Ensembl chr14:1,032,171...1,046,522 		JBrowse link
G Vsir V-set immunoregulatory receptor involved_in ISO (PMID:20666777) RGD PMID:20666777 NCBI chr20:28,824,493...28,850,175
Ensembl chr20:28,281,596...28,303,878 		JBrowse link
regulation of collagen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fap fibroblast activation protein, alpha involved_in ISO
IEA		 (PMID:10455171)
GO_REF:0000107		 RGD
Ensembl		 PMID:10455171 GO_REF:0000107 NCBI chr 3:67,547,398...67,616,271
Ensembl chr 3:47,138,813...47,225,545 		JBrowse link
G Itgb1 integrin subunit beta 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:10455171)		 UniProt
RGD		 PMID:10455171 GO_REF:0000024 NCBI chr19:73,602,277...73,650,271
Ensembl chr19:56,705,171...56,753,195 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      metabolic process 12180
        collagen metabolic process 134
          collagen catabolic process 38
            negative regulation of collagen catabolic process 1
            positive regulation of collagen catabolic process 2
            regulation of collagen catabolic process + 5
paths to the root