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ONTOLOGY REPORT - ANNOTATIONS

Term:protein catabolic process
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Accession:GO:0030163 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
Comment:This term refers to the breakdown of mature proteins. For cleavage events involved in generating a mature protein from a precursor, consider instead the term 'protein maturation ; GO:0051604' and its children.
Synonyms:exact_synonym: cellular protein breakdown;   cellular protein catabolic process;   cellular protein catabolism;   cellular protein degradation;   protein breakdown;   protein catabolism;   protein degradation
 narrow_synonym: multicellular organismal protein catabolic process
 related_synonym: pheromone catabolic process;   pheromone catabolism
 alt_id: GO:0044254;   GO:0044257
 xref: Wikipedia:Protein_catabolism

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protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acr acrosin ISO RGD PMID:28859281 RGD:13464336 NCBI chrNW_004936629:104,301...111,377 JBrowse link
G Adamts13 ADAM metallopeptidase with thrombospondin type 1 motif 13 ISO RGD PMID:19652891 RGD:2315953 NCBI chrNW_004936669:3,449,259...3,478,471
Ensembl chrNW_004936669:3,456,494...3,478,512 		JBrowse link
G Afg3l2 AFG3 like matrix AAA peptidase subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936626:150,953...189,980
Ensembl chrNW_004936626:150,974...189,218 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12145204) Ensembl
MGI		 PMID:12145204 GO_REF:0000107 NCBI chrNW_004936621:620,163...639,115
Ensembl chrNW_004936621:620,074...639,093 		JBrowse link
G Ambp alpha-1-microglobulin/bikunin precursor ISO RGD PMID:11307954 RGD:6904220 NCBI chrNW_004936487:3,399,792...3,412,088 JBrowse link
G Ankrd11 ankyrin repeat domain containing 11 acts_upstream_of_or_within ISO (PMID:25413698) MGI PMID:25413698 NCBI chrNW_004936641:569,002...661,935
Ensembl chrNW_004936641:627,398...661,137 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of ISO (PMID:16478791) MGI PMID:16478791 NCBI chrNW_004936531:6,899,580...7,019,016
Ensembl chrNW_004936531:6,899,788...7,019,453 		JBrowse link
G Ark2c arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23610558) Ensembl
MGI		 PMID:23610558 GO_REF:0000107 NCBI chrNW_004936517:428,689...531,360
Ensembl chrNW_004936517:429,292...531,361 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO (PMID:15866887) MGI PMID:15866887 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256 		JBrowse link
G Axin1 axin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12717450) Ensembl
MGI		 PMID:12717450 GO_REF:0000107 NCBI chrNW_004936501:599,963...633,837
Ensembl chrNW_004936501:599,919...633,873 		JBrowse link
G Bcas2 BCAS2 pre-mRNA processing factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:34972250) Ensembl
MGI		 PMID:34972250 GO_REF:0000107 NCBI chrNW_004936690:2,900,003...2,913,427
Ensembl chrNW_004936690:2,900,002...2,913,381 		JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12843402) Ensembl
MGI		 PMID:12843402 GO_REF:0000107 NCBI chrNW_004936600:4,215,219...4,424,498
Ensembl chrNW_004936600:4,213,956...4,397,987 		JBrowse link
G Capn1 calpain 1 ISO RGD PMID:11893336 PMID:17429681 RGD:1626249 RGD:70442 NCBI chrNW_004936599:4,178,963...4,201,037
Ensembl chrNW_004936599:4,178,901...4,201,052 		JBrowse link
G Capn10 calpain 10 ISO RGD PMID:16790502 RGD:1625051 NCBI chrNW_004936745:1,029,514...1,039,524 JBrowse link
G Capn2 calpain 2 ISO RGD PMID:17402852 PMID:17429681 RGD:1626249 RGD:2303056 NCBI chrNW_004936526:879,765...932,682
Ensembl chrNW_004936526:879,765...932,682 		JBrowse link
G Capn3 calpain 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:5,667,839...5,711,822
Ensembl chrNW_004936471:5,668,169...5,711,075 		JBrowse link
G Capns1 calpain small subunit 1 ISO RGD PMID:7982961 RGD:634695 NCBI chrNW_004936922:151,791...161,655
Ensembl chrNW_004936922:151,599...164,787 		JBrowse link
G Casp3 caspase 3 involved_in ISO (PMID:16374543) RGD
UniProt		 PMID:15004018 PMID:16374543 PMID:18316105 RGD:1581919 RGD:2311460 NCBI chrNW_004936554:4,571,072...4,593,765 JBrowse link
G Casp7 caspase 7 involved_in ISO
IEA		 RGD
Ensembl		 PMID:18316105 GO_REF:0000107 RGD:2311460 NCBI chrNW_004936486:4,082,664...4,114,942
Ensembl chrNW_004936486:4,088,372...4,114,955 		JBrowse link
G Cast calpastatin acts_upstream_of_or_within ISO (PMID:11673859) MGI PMID:11673859 NCBI chrNW_004936523:6,688,153...6,798,184
Ensembl chrNW_004936523:6,686,519...6,798,321 		JBrowse link
G Cblb Cbl proto-oncogene B involved_in
acts_upstream_of		 IEA
ISO		 (PMID:14973438) Ensembl
MGI		 PMID:14973438 GO_REF:0000107 NCBI chrNW_004936701:1,157,790...1,353,375
Ensembl chrNW_004936701:1,157,797...1,353,388 		JBrowse link
G Cblc Cbl proto-oncogene C acts_upstream_of_or_within ISO (PMID:18753381) MGI PMID:18753381 NCBI chrNW_004936706:1,436,732...1,450,485 JBrowse link
G Cd2ap CD2 associated protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18753381)
(PMID:14512504)		 MGI
Ensembl		 PMID:14512504 PMID:18753381 GO_REF:0000107 NCBI chrNW_004936476:12,890,595...12,989,046
Ensembl chrNW_004936476:12,890,468...12,987,843 		JBrowse link
G Chek2 checkpoint kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936657:2,805,947...2,848,180
Ensembl chrNW_004936657:2,805,959...2,848,180 		JBrowse link
G Cln8 CLN8 transmembrane ER and ERGIC protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:8389815) MGI
Ensembl		 PMID:8389815 GO_REF:0000107 NCBI chrNW_004936615:993,092...999,976
Ensembl chrNW_004936615:985,634...1,003,172 		JBrowse link
G Cpb2 carboxypeptidase B2 ISO RGD PMID:11021404 RGD:625371 NCBI chrNW_004936857:577,067...609,855
Ensembl chrNW_004936857:577,585...626,267 		JBrowse link
G Cpn1 carboxypeptidase N subunit 1 ISO RGD PMID:11021404 RGD:625371 NCBI chrNW_004936636:145,148...172,865
Ensembl chrNW_004936636:145,024...172,876 		JBrowse link
G Ctsd cathepsin D ISO RGD PMID:12666874 RGD:1299317 NCBI chrNW_004936816:680,798...690,959
Ensembl chrNW_004936816:680,798...691,039 		JBrowse link
G Ctsl cathepsin L ISO RGD PMID:11788364 RGD:631244 NCBI chrNW_004936680:3,047,355...3,050,640 JBrowse link
G Cul2 cullin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15601820) Ensembl
MGI		 PMID:15601820 GO_REF:0000107 NCBI chrNW_004936574:3,310,304...3,408,389
Ensembl chrNW_004936574:3,309,941...3,408,370 		JBrowse link
G Cul3 cullin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936569:6,067,230...6,131,467
Ensembl chrNW_004936569:6,065,367...6,132,316 		JBrowse link
G Dab2ip DAB2 interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:10,056,809...10,243,021
Ensembl chrNW_004936487:10,145,278...10,243,174 		JBrowse link
G Dennd3 DENN domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:10,217,404...10,264,911
Ensembl chrNW_004936470:10,217,394...10,264,956 		JBrowse link
G Dpp3 dipeptidyl peptidase 3 ISO RGD PMID:10387075 RGD:728455 NCBI chrNW_004936599:3,076,909...3,098,012
Ensembl chrNW_004936599:3,076,909...3,097,785 		JBrowse link
G Dpp4 dipeptidyl peptidase 4 ISO RGD PMID:17415460 RGD:1626457 NCBI chrNW_004936469:16,979,220...17,062,198
Ensembl chrNW_004936469:16,979,410...17,061,159 		JBrowse link
G Dpp7 dipeptidyl peptidase 7 ISO RGD PMID:11173530 RGD:70800 NCBI chrNW_004936669:868,889...872,982
Ensembl chrNW_004936669:869,067...872,885 		JBrowse link
G Dysf dysferlin acts_upstream_of ISO (PMID:20724702) MGI PMID:20724702 NCBI chrNW_004936491:15,412,606...15,618,519
Ensembl chrNW_004936491:15,413,206...15,618,519 		JBrowse link
G Epg5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:31628468) MGI
Ensembl		 PMID:31628468 GO_REF:0000107 NCBI chrNW_004936517:841,402...941,054
Ensembl chrNW_004936517:841,411...939,581 		JBrowse link
G Erap1 endoplasmic reticulum aminopeptidase 1 ISO RGD PMID:10824104 RGD:1299521 NCBI chrNW_004936523:6,661,119...6,686,988
Ensembl chrNW_004936523:6,661,315...6,690,425 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22556407) Ensembl
MGI		 PMID:22556407 GO_REF:0000107 NCBI chrNW_004936470:28,303,213...28,566,470
Ensembl chrNW_004936470:28,303,828...28,566,118 		JBrowse link
G Fbxl5 F-box and leucine rich repeat protein 5 acts_upstream_of
involved_in		 ISO
IEA		 (PMID:21907140) MGI
Ensembl		 PMID:21907140 GO_REF:0000107 NCBI chrNW_004936477:12,279,521...12,312,927
Ensembl chrNW_004936477:12,279,541...12,313,007 		JBrowse link
G Fbxo24 F-box protein 24 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:38470475) MGI
Ensembl		 PMID:38470475 GO_REF:0000107 NCBI chrNW_004936543:645,866...653,764
Ensembl chrNW_004936543:643,823...654,894 		JBrowse link
G Fbxo43 F-box protein 43 acts_upstream_of ISO (PMID:16966421) MGI PMID:16966421 NCBI chrNW_004936470:43,091,516...43,100,973
Ensembl chrNW_004936470:43,088,714...43,100,973 		JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase involved_in
acts_upstream_of		 IEA
ISO		 (PMID:16841086) Ensembl
MGI		 PMID:16841086 GO_REF:0000107 NCBI chrNW_004936679:388,500...588,518
Ensembl chrNW_004936679:387,387...443,880 		JBrowse link
G Gga1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22836275) Ensembl
MGI		 PMID:22836275 GO_REF:0000107 NCBI chrNW_004936492:3,445,271...3,464,960
Ensembl chrNW_004936492:3,445,094...3,464,809 		JBrowse link
G Gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 acts_upstream_of
involved_in		 ISO
IEA		 (PMID:22836275) MGI
Ensembl		 PMID:22836275 GO_REF:0000107 NCBI chrNW_004936594:531,844...548,487
Ensembl chrNW_004936594:532,342...548,440 		JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A involved_in
acts_upstream_of		 IEA
ISO		 (PMID:15317856) Ensembl
MGI		 PMID:15317856 GO_REF:0000107 NCBI chrNW_004936530:8,286,101...8,612,183
Ensembl chrNW_004936530:8,287,574...8,608,343 		JBrowse link
G Hamp hepcidin antimicrobial peptide involved_in
acts_upstream_of		 IEA
ISO		 (PMID:21700773) Ensembl
MGI		 PMID:21700773 GO_REF:0000107 NCBI chrNW_004936570:1,009,344...1,010,654
Ensembl chrNW_004936570:1,009,312...1,010,686 		JBrowse link
G Htra2 HtrA serine peptidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936556:741,718...746,016
Ensembl chrNW_004936556:741,718...749,090 		JBrowse link
G Ide insulin degrading enzyme involved_in ISO
IEA		 degradation of oxidized proteins in liver peroxisomes RGD
Ensembl		 PMID:11235899 GO_REF:0000107 RGD:1627575 NCBI chrNW_004936601:2,230,477...2,318,562
Ensembl chrNW_004936601:2,230,283...2,318,752 		JBrowse link
G Il17ra interleukin 17 receptor A involved_in ISO (PMID:28561022) MGI PMID:28561022 NCBI chrNW_004936807:143,165...165,820 JBrowse link
G Itch itchy E3 ubiquitin protein ligase involved_in
acts_upstream_of		 IEA
ISO		 (PMID:14973438) Ensembl
MGI		 PMID:14973438 GO_REF:0000107 NCBI chrNW_004936561:6,140,236...6,265,734
Ensembl chrNW_004936561:6,140,234...6,265,767 		JBrowse link
G Klhl3 kelch like family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:4,592,654...4,696,348
Ensembl chrNW_004936597:4,592,621...4,696,377 		JBrowse link
G Klk4 kallikrein related peptidase 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22243248) Ensembl
MGI		 PMID:22243248 GO_REF:0000107 NCBI chrNW_004936889:583,259...586,412
Ensembl chrNW_004936889:583,302...586,412 		JBrowse link
G Lamp2 lysosomal associated membrane protein 2 involved_in ISO (PMID:36586411) UniProt PMID:36586411 NCBI chrNW_004936479:9,584,221...9,622,330
Ensembl chrNW_004936479:9,584,221...9,610,420 		JBrowse link
G Lnpep leucyl and cystinyl aminopeptidase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11884418) Ensembl
MGI		 PMID:11884418 GO_REF:0000107 NCBI chrNW_004936523:6,443,571...6,533,122
Ensembl chrNW_004936523:6,445,939...6,532,566 		JBrowse link
G LOC101957150 stromelysin-1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:5,137,801...5,145,934
Ensembl chrNW_004936551:5,137,801...5,145,934 		JBrowse link
G Lonp1 lon peptidase 1, mitochondrial involved_in ISO
IEA		 RGD
InterPro
Ensembl		 PMID:12752449 GO_REF:0000002 GO_REF:0000107 RGD:1580665 NCBI chrNW_004936588:3,265,344...3,287,035
Ensembl chrNW_004936588:3,265,512...3,287,181 		JBrowse link
G Lonp2 lon peptidase 2, peroxisomal involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936475:1,480,723...1,584,757
Ensembl chrNW_004936475:1,480,670...1,584,445 		JBrowse link
G Lpcat1 lysophosphatidylcholine acyltransferase 1 acts_upstream_of
involved_in		 ISO
IEA		 (PMID:20018880) MGI
Ensembl		 PMID:20018880 GO_REF:0000107 NCBI chrNW_004936815:281,664...345,915
Ensembl chrNW_004936815:292,200...344,413 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:15,181,009...15,217,952
Ensembl chrNW_004936487:15,180,811...15,217,406 		JBrowse link
G Mme membrane metalloendopeptidase ISO RGD PMID:15308303 PMID:15908023 RGD:1581744 RGD:1600807 NCBI chrNW_004936519:2,513,896...2,595,896
Ensembl chrNW_004936519:2,513,704...2,595,971 		JBrowse link
G Mmp13 matrix metallopeptidase 13 ISO RGD PMID:17941091 RGD:2296055 NCBI chrNW_004936551:5,040,084...5,050,384
Ensembl chrNW_004936551:5,040,084...5,050,384 		JBrowse link
G Mmp14 matrix metallopeptidase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:1,447,189...1,457,632
Ensembl chrNW_004936722:1,447,335...1,457,611 		JBrowse link
G Mmp2 matrix metallopeptidase 2 ISO RGD PMID:16899336 RGD:1601417 NCBI chrNW_004936475:7,801,356...7,825,831
Ensembl chrNW_004936475:7,801,277...7,825,851 		JBrowse link
G Mmp20 matrix metallopeptidase 20 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22243248) Ensembl
MGI		 PMID:22243248 GO_REF:0000107 NCBI chrNW_004936551:5,310,426...5,352,883
Ensembl chrNW_004936551:5,310,426...5,352,883 		JBrowse link
G Mmp8 matrix metallopeptidase 8 ISO RGD PMID:16153442 RGD:2298554 NCBI chrNW_004936551:5,228,950...5,238,948
Ensembl chrNW_004936551:5,228,950...5,238,948 		JBrowse link
G Mmp9 matrix metallopeptidase 9 ISO RGD PMID:11788364 PMID:16303975 RGD:1580555 RGD:631244 NCBI chrNW_004936514:7,038,240...7,045,873
Ensembl chrNW_004936514:7,037,639...7,045,793 		JBrowse link
G Ndfip1 Nedd4 family interacting protein 1 acts_upstream_of ISO (PMID:17137798) MGI PMID:17137798 NCBI chrNW_004936504:12,053,470...12,103,346 JBrowse link
G Nln neurolysin ISO RGD PMID:7836437 RGD:9831155 NCBI chrNW_004936480:3,383,514...3,480,991
Ensembl chrNW_004936480:3,383,540...3,481,009 		JBrowse link
G Notch1 notch receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:1,292,016...1,334,061
Ensembl chrNW_004936669:1,292,088...1,332,428 		JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:19,771,384...19,785,034
Ensembl chrNW_004936475:19,769,488...19,785,311 		JBrowse link
G Nrg1 neuregulin 1 acts_upstream_of ISO (PMID:20448149) MGI PMID:20448149 NCBI chrNW_004936766:1,104,841...1,306,368
Ensembl chrNW_004936766:1,104,728...1,305,972 		JBrowse link
G P2rx7 purinergic receptor P2X 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11489964) Ensembl
MGI		 PMID:11489964 GO_REF:0000107 NCBI chrNW_004936558:3,106,819...3,149,689
Ensembl chrNW_004936558:3,108,283...3,149,765 		JBrowse link
G Pappa pappalysin 1 ISO RGD PMID:15754336 RGD:1642332 NCBI chrNW_004936487:5,000,279...5,379,786
Ensembl chrNW_004936487:5,144,044...5,376,367 		JBrowse link
G Pdlim2 PDZ and LIM domain 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:6,318,813...6,331,556
Ensembl chrNW_004936555:6,318,762...6,331,575 		JBrowse link
G Pgpep1 pyroglutamyl-peptidase I ISO RGD PMID:14600395 RGD:1303965 NCBI chrNW_004936596:2,869,100...2,892,342
Ensembl chrNW_004936596:2,869,106...2,892,342 		JBrowse link
G Pja1 praja ring finger ubiquitin ligase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11959851) Ensembl
MGI		 PMID:11959851 GO_REF:0000107 NCBI chrNW_004936777:796,101...801,111
Ensembl chrNW_004936777:796,756...798,726 		JBrowse link
G Ppt1 palmitoyl-protein thioesterase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16368712) Ensembl
MGI		 PMID:16368712 GO_REF:0000107 NCBI chrNW_004936474:21,881,692...21,906,564
Ensembl chrNW_004936474:21,881,712...21,906,569 		JBrowse link
G Prep prolyl endopeptidase ISO RGD PMID:11792464 PMID:17415460 RGD:1626457 RGD:633649 NCBI chrNW_004936564:1,944,245...2,062,178
Ensembl chrNW_004936564:1,944,245...2,062,262 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:12,118,538...12,913,664
Ensembl chrNW_004936489:12,120,678...13,327,872 		JBrowse link
G Proc protein C, inactivator of coagulation factors Va and VIIIa ISO RGD PMID:1440533 RGD:11100042 NCBI chrNW_004936469:43,841,989...43,850,322
Ensembl chrNW_004936469:43,841,989...43,850,304 		JBrowse link
G Rab12 RAB12, member RAS oncogene family involved_in ISO (PMID:21718402) UniProt PMID:21718402 NCBI chrNW_004936670:2,315,930...2,338,489
Ensembl chrNW_004936670:2,315,442...2,338,509 		JBrowse link
G Rbx1 ring-box 1 acts_upstream_of_or_within ISO (PMID:15601820) MGI PMID:15601820 NCBI chrNW_004936492:872,316...890,860
Ensembl chrNW_004936492:873,576...890,835 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in
acts_upstream_of		 IEA
ISO		 (PMID:15923614) Ensembl
MGI		 PMID:15923614 GO_REF:0000107 NCBI chrNW_004936599:3,800,142...3,810,583
Ensembl chrNW_004936599:3,801,636...3,809,813 		JBrowse link
G Ripk1 receptor interacting serine/threonine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936534:9,326,307...9,361,943
Ensembl chrNW_004936534:9,325,249...9,361,949 		JBrowse link
G Rnf170 ring finger protein 170 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:31076723) MGI
Ensembl		 PMID:31076723 GO_REF:0000107 NCBI chrNW_004937108:111,111...147,077
Ensembl chrNW_004937108:117,881...150,498 		JBrowse link
G Rnf5 ring finger protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,422,207...1,424,808
Ensembl chrNW_004936727:1,422,207...1,424,739 		JBrowse link
G Serpine2 serpin family E member 2 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:15509762) Ensembl
MGI		 PMID:15509762 GO_REF:0000107 NCBI chrNW_004936569:5,642,328...5,668,278
Ensembl chrNW_004936569:5,642,264...5,668,323 		JBrowse link
G Siah1 siah E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:1,589,997...1,621,506
Ensembl chrNW_004936475:1,590,004...1,594,894 		JBrowse link
G Slc6a17 solute carrier family 6 member 17 involved_in ISO PMID:19147495 SynGO PMID:19147495 RGD:8554196 NCBI chrNW_004936704:1,606,418...1,654,026
Ensembl chrNW_004936704:1,622,504...1,654,026 		JBrowse link
G Slc6a7 solute carrier family 6 member 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:4,709,539...4,730,583
Ensembl chrNW_004936504:4,709,583...4,730,219 		JBrowse link
G Slc6a8 solute carrier family 6 member 8 involved_in ISO PMID:20731764 SynGO PMID:20731764 RGD:13702397 NCBI chrNW_004936809:571,234...578,298 JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:37871017) MGI PMID:37871017 NCBI chrNW_004936471:7,540,647...7,618,783 JBrowse link
G Spop speckle type BTB/POZ protein involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936490:11,894,449...11,969,730
Ensembl chrNW_004936490:11,894,406...11,970,155 		JBrowse link
G Spopl speckle type BTB/POZ protein like involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936469:37,608,044...37,661,337
Ensembl chrNW_004936469:37,603,803...37,661,436 		JBrowse link
G Sqstm1 sequestosome 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936739:943,080...955,296
Ensembl chrNW_004936739:938,745...955,263 		JBrowse link
G St14 ST14 transmembrane serine protease matriptase ISO RGD PMID:11573963 RGD:634217 NCBI chrNW_004936572:2,137,820...2,182,674
Ensembl chrNW_004936572:2,137,332...2,182,742 		JBrowse link
G Syvn1 synoviolin 1 involved_in ISO (PMID:20160352) ParkinsonsUK-UCL PMID:20160352 NCBI chrNW_004936599:4,235,779...4,243,395
Ensembl chrNW_004936599:4,236,188...4,243,394 		JBrowse link
G Tpp1 tripeptidyl peptidase 1 ISO RGD PMID:10679303 RGD:1581099 NCBI chrNW_004936842:669,869...676,706
Ensembl chrNW_004936842:669,863...676,720 		JBrowse link
G Tpp2 tripeptidyl peptidase 2 ISO RGD PMID:12147224 RGD:634435 NCBI chrNW_004936472:8,370,607...8,438,376
Ensembl chrNW_004936472:8,369,736...8,438,412 		JBrowse link
G Traf2 TNF receptor associated factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12958312) Ensembl
MGI		 PMID:12958312 GO_REF:0000107 NCBI chrNW_004936669:1,004,891...1,034,913
Ensembl chrNW_004936669:1,003,528...1,029,249 		JBrowse link
G Trim24 tripartite motif containing 24 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936592:2,902,805...2,962,602
Ensembl chrNW_004936592:2,863,743...2,963,977 		JBrowse link
G Ube4b ubiquitination factor E4B acts_upstream_of_or_within ISO (PMID:16314518) MGI PMID:16314518 NCBI chrNW_004936623:3,934,439...4,051,083
Ensembl chrNW_004936623:3,934,310...4,051,146 		JBrowse link
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:37871017) MGI
Ensembl		 PMID:37871017 GO_REF:0000107 NCBI chrNW_004936474:5,373,303...5,492,950
Ensembl chrNW_004936474:5,373,186...5,493,635 		JBrowse link
G Uchl3 ubiquitin C-terminal hydrolase L3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936511:5,524,425...5,581,156
Ensembl chrNW_004936511:5,522,965...5,581,334 		JBrowse link
G Utp25 UTP25 small subunit processome component involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:3,244,274...3,268,853
Ensembl chrNW_004936557:3,223,470...3,268,888 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12832481) Ensembl
MGI		 PMID:12832481 GO_REF:0000107 NCBI chrNW_004936602:3,135,790...3,140,622 JBrowse link
acrosome matrix dispersal term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acr acrosin ISO RGD PMID:28859281 RGD:13464336 NCBI chrNW_004936629:104,301...111,377 JBrowse link
anaphase-promoting complex-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anapc1 anaphase promoting complex subunit 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936783:509,287...591,153
Ensembl chrNW_004936783:511,713...590,187 		JBrowse link
G Anapc10 anaphase promoting complex subunit 10 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936535:3,984,980...4,061,237
Ensembl chrNW_004936535:3,984,619...4,062,413 		JBrowse link
G Anapc11 anaphase promoting complex subunit 11 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936594:5,402,290...5,407,510
Ensembl chrNW_004936594:5,402,453...5,407,509 		JBrowse link
G Anapc13 anaphase promoting complex subunit 13 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004936529:7,569,362...7,577,537 JBrowse link
G Anapc15 anaphase promoting complex subunit 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:1,460,795...1,468,363
Ensembl chrNW_004936498:1,463,810...1,468,351 		JBrowse link
G Anapc16 anaphase promoting complex subunit 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:6,680,119...6,696,661
Ensembl chrNW_004936521:6,678,755...6,697,488 		JBrowse link
G Anapc2 anaphase promoting complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:797,475...808,952
Ensembl chrNW_004936669:797,318...811,721 		JBrowse link
G Anapc4 anaphase promoting complex subunit 4 involved_in IEA TreeGrafter
UniProt
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936477:4,134,449...4,166,496
Ensembl chrNW_004936477:4,134,403...4,166,537 		JBrowse link
G Anapc5 anaphase promoting complex subunit 5 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936558:2,967,684...3,006,833
Ensembl chrNW_004936558:2,967,817...3,006,718 		JBrowse link
G Anapc7 anaphase promoting complex subunit 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936558:3,365,729...3,391,292
Ensembl chrNW_004936558:3,363,807...3,391,438 		JBrowse link
G Cdc16 cell division cycle 16 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004937030:217,078...242,126
Ensembl chrNW_004937030:216,744...241,196 		JBrowse link
G Cdc20 cell division cycle 20 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:24,760,258...24,765,069
Ensembl chrNW_004936474:24,760,298...24,767,725 		JBrowse link
G Cdc20b cell division cycle 20B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936480:12,593,216...12,640,661
Ensembl chrNW_004936480:12,593,216...12,640,661 		JBrowse link
G Cdc23 cell division cycle 23 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936531:7,371,818...7,392,999
Ensembl chrNW_004936531:7,370,358...7,393,049 		JBrowse link
G Cdc26 cell division cycle 26 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936559:321,141...330,103
Ensembl chrNW_004936559:321,083...331,567 		JBrowse link
G Cdc27 cell division cycle 27 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936541:2,700,997...2,762,180
Ensembl chrNW_004936541:2,700,997...2,762,147 		JBrowse link
G Cul3 cullin 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10500095) MGI
Ensembl		 PMID:10500095 GO_REF:0000107 NCBI chrNW_004936569:6,067,230...6,131,467
Ensembl chrNW_004936569:6,065,367...6,132,316 		JBrowse link
G Fbxo31 F-box protein 31 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:1,801,539...1,831,988
Ensembl chrNW_004936641:1,801,548...1,830,440 		JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936588:2,000,872...2,007,569
Ensembl chrNW_004936588:1,993,721...2,009,240 		JBrowse link
G Ube2c ubiquitin conjugating enzyme E2 C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:7,204,332...7,208,340
Ensembl chrNW_004936514:7,199,539...7,207,655 		JBrowse link
G Ube2s ubiquitin conjugating enzyme E2 S involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936886:643,358...648,293
Ensembl chrNW_004936886:640,745...648,531 		JBrowse link
CAT tailing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nemf nuclear export mediator factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936583:209,818...255,439
Ensembl chrNW_004936583:209,813...255,131 		JBrowse link
chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg5 autophagy related 5 involved_in ISO PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chrNW_004936564:2,759,085...2,885,394
Ensembl chrNW_004936564:2,758,598...2,885,420 		JBrowse link
G Atg7 autophagy related 7 involved_in ISO PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 acts_upstream_of_or_within
involved_in		 ISO PMID:18644871 MGI
ParkinsonsUK-UCL		 PMID:18644871 RGD:10412301 NCBI chrNW_004936542:7,577,192...7,581,598
Ensembl chrNW_004936542:7,577,149...7,581,923 		JBrowse link
G Lamp2 lysosomal associated membrane protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18579532) Ensembl
MGI		 PMID:18579532 GO_REF:0000107 NCBI chrNW_004936479:9,584,221...9,622,330
Ensembl chrNW_004936479:9,584,221...9,610,420 		JBrowse link
G Synpo2 synaptopodin 2 involved_in ISO PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chrNW_004936869:321,821...461,253 JBrowse link
cytoplasm protein quality control term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:5,373,303...5,492,950
Ensembl chrNW_004936474:5,373,186...5,493,635 		JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:41,222,782...41,345,755
Ensembl chrNW_004936470:41,252,951...41,344,134 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:3,085,959...3,102,461
Ensembl chrNW_004936524:3,085,500...3,102,466 		JBrowse link
cytoplasm protein quality control by the ubiquitin-proteasome system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101961559 E3 ubiquitin-protein ligase RNF126 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:231,723...237,969
Ensembl chrNW_004936588:255,639...260,291
Ensembl chrNW_004936588:255,639...260,291 		JBrowse link
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:5,373,303...5,492,950
Ensembl chrNW_004936474:5,373,186...5,493,635 		JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:41,222,782...41,345,755
Ensembl chrNW_004936470:41,252,951...41,344,134 		JBrowse link
elastin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cela1 chymotrypsin like elastase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24793170) MGI
Ensembl		 PMID:24793170 GO_REF:0000107 NCBI chrNW_004936512:8,901,674...8,919,819
Ensembl chrNW_004936512:8,905,339...8,919,819 		JBrowse link
G Ctsl cathepsin L involved_in ISO (PMID:12417635) UniProt PMID:12417635 NCBI chrNW_004936680:3,047,355...3,050,640 JBrowse link
G Mmp12 matrix metallopeptidase 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:5,107,567...5,117,843
Ensembl chrNW_004936551:5,106,285...5,117,843 		JBrowse link
epidermal growth factor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab7a RAB7A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:297,600...304,929
Ensembl chrNW_004936798:296,066...305,176 		JBrowse link
G Snx5 sorting nexin 5 ISO RGD PMID:16487940 RGD:13508623 NCBI chrNW_004936485:2,167,987...2,191,157
Ensembl chrNW_004936485:2,168,243...2,190,402 		JBrowse link
ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amfr autocrine motility factor receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:8,692,969...8,727,252
Ensembl chrNW_004936475:8,692,844...8,727,385 		JBrowse link
G Ankzf1 ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936569:1,645,780...1,653,526
Ensembl chrNW_004936569:1,650,088...1,653,522 		JBrowse link
G Aup1 AUP1 lipid droplet regulating VLDL assembly factor involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936556:738,946...742,049
Ensembl chrNW_004936556:739,094...742,034 		JBrowse link
G Bag6 BAG cochaperone 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936727:1,866,235...1,885,266
Ensembl chrNW_004936727:1,873,413...1,885,366 		JBrowse link
G Brsk2 BR serine/threonine kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936816:307,736...335,953
Ensembl chrNW_004936816:307,250...334,785 		JBrowse link
G Calr calreticulin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936659:1,994,695...1,999,070
Ensembl chrNW_004936659:1,994,648...1,999,430 		JBrowse link
G Calr3 calreticulin 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936596:4,120,292...4,140,432
Ensembl chrNW_004936596:4,120,295...4,140,432 		JBrowse link
G Canx calnexin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936739:1,051,853...1,085,658
Ensembl chrNW_004936739:1,051,240...1,086,405 		JBrowse link
G Ccdc47 coiled-coil domain containing 47 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25009997) Ensembl
MGI		 PMID:25009997 GO_REF:0000107 NCBI chrNW_004936541:4,389,428...4,418,414
Ensembl chrNW_004936541:4,389,266...4,418,662 		JBrowse link
G Clgn calmegin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936535:7,358,960...7,399,535
Ensembl chrNW_004936535:7,358,939...7,399,538 		JBrowse link
G CUNH1orf116 chromosome unknown C1orf116 homolog involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936557:5,586,969...5,615,159
Ensembl chrNW_004936557:5,584,324...5,616,998
Ensembl chrNW_004936557:5,584,324...5,616,998 		JBrowse link
G Derl1 derlin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:24,262,401...24,286,713
Ensembl chrNW_004936470:24,262,091...24,286,577 		JBrowse link
G Derl2 derlin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936677:2,328,783...2,342,068
Ensembl chrNW_004936677:2,328,904...2,342,080 		JBrowse link
G Derl3 derlin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:1,271,980...1,275,212
Ensembl chrNW_004936619:1,271,797...1,275,214 		JBrowse link
G Dnajb12 DnaJ heat shock protein family (Hsp40) member B12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:6,583,828...6,605,744
Ensembl chrNW_004936521:6,583,908...6,607,628 		JBrowse link
G Dnajb2 DnaJ heat shock protein family (Hsp40) member B2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936569:1,689,926...1,697,179
Ensembl chrNW_004936569:1,689,507...1,698,954 		JBrowse link
G Dnajb9 DnaJ heat shock protein family (Hsp40) member B9 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936653:1,554,534...1,558,832
Ensembl chrNW_004936653:1,554,553...1,559,170 		JBrowse link
G Dnajc10 DnaJ heat shock protein family (Hsp40) member C10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:11,334,859...11,383,668
Ensembl chrNW_004936509:11,334,611...11,382,377 		JBrowse link
G Ecpas Ecm29 proteasome adaptor and scaffold involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936559:1,807,768...1,918,529
Ensembl chrNW_004936559:1,807,753...1,921,423 		JBrowse link
G Edem1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11375934) Ensembl
MGI		 PMID:11375934 GO_REF:0000107 NCBI chrNW_004936577:4,486,617...4,516,379
Ensembl chrNW_004936577:4,486,885...4,513,555 		JBrowse link
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:5,352,964...5,424,944
Ensembl chrNW_004936481:5,352,956...5,424,944 		JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 involved_in ISO (PMID:17707796) UniProt PMID:17707796 NCBI chrNW_004936712:413,602...454,443
Ensembl chrNW_004936712:414,446...454,449 		JBrowse link
G Erlec1 endoplasmic reticulum lectin 1 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936491:351,813...377,978
Ensembl chrNW_004936491:351,420...378,441 		JBrowse link
G Erlin1 ER lipid raft associated 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936636:80,583...116,027
Ensembl chrNW_004936636:80,564...116,694 		JBrowse link
G Erlin2 ER lipid raft associated 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936710:1,193,679...1,210,059
Ensembl chrNW_004936710:1,193,411...1,210,739 		JBrowse link
G Faf1 Fas associated factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936522:9,774,943...10,160,987
Ensembl chrNW_004936522:9,784,203...10,161,774 		JBrowse link
G Faf2 Fas associated factor family member 2 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936597:710,168...772,455
Ensembl chrNW_004936597:710,100...772,765 		JBrowse link
G Fbxo2 F-box protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15723043) Ensembl
MGI
TreeGrafter		 PMID:15723043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:521,235...526,151
Ensembl chrNW_004936474:521,123...526,959 		JBrowse link
G Fbxo27 F-box protein 27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936661:1,931,036...1,936,548
Ensembl chrNW_004936661:1,931,025...1,936,526 		JBrowse link
G Fbxo44 F-box protein 44 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:526,191...531,825
Ensembl chrNW_004936474:525,862...532,152 		JBrowse link
G Fbxo6 F-box protein 6 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:531,873...538,596
Ensembl chrNW_004936474:533,254...542,907 		JBrowse link
G Foxred2 FAD dependent oxidoreductase domain containing 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936492:4,272,965...4,292,356
Ensembl chrNW_004936492:4,273,431...4,289,344 		JBrowse link
G Get4 guided entry of tail-anchored proteins factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936754:1,113,835...1,128,881
Ensembl chrNW_004936754:1,113,790...1,128,875 		JBrowse link
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:9,091,115...9,102,101
Ensembl chrNW_004936475:9,091,176...9,102,109 		JBrowse link
G Hsp90b1 heat shock protein 90 beta family member 1 involved_in
NOT|involved_in		 IEA
ISO		 (PMID:24899641) Ensembl
UniProt		 PMID:24899641 GO_REF:0000107 NCBI chrNW_004936492:10,513,908...10,528,281
Ensembl chrNW_004936492:10,513,908...10,528,285 		JBrowse link
G Jkamp JNK1/MAPK8 associated membrane protein involved_in ISO (PMID:19269966) UniProt PMID:19269966 NCBI chrNW_004936495:3,839,057...3,849,062 JBrowse link
G LOC101960961 calreticulin-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936522:9,296,373...9,329,572 JBrowse link
G LOC101973161 ER degradation-enhancing alpha-mannosidase-like protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:5,578,267...5,605,512
Ensembl chrNW_004936561:5,578,236...5,605,810 		JBrowse link
G Man1a1 mannosidase alpha class 1A member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936658:1,981,203...2,148,349
Ensembl chrNW_004936658:1,983,787...2,150,280 		JBrowse link
G Man1b1 mannosidase alpha class 1B member 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15294975) MGI
Ensembl		 PMID:15294975 GO_REF:0000107 NCBI chrNW_004936669:855,349...867,763
Ensembl chrNW_004936669:855,340...871,516 		JBrowse link
G Marchf6 membrane associated ring-CH-type finger 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936643:2,455,496...2,507,185
Ensembl chrNW_004936643:2,455,328...2,507,225 		JBrowse link
G Nccrp1 NCCRP1, F-box associated domain containing involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936661:2,057,664...2,060,519
Ensembl chrNW_004936661:2,057,664...2,060,526 		JBrowse link
G Nploc4 NPL4 homolog, ubiquitin recognition factor involved_in ISO PMID:12847084
(PMID:12847084)		 ComplexPortal PMID:12847084 RGD:10047330 NCBI chrNW_004936594:5,206,222...5,251,042
Ensembl chrNW_004936594:5,205,659...5,251,026 		JBrowse link
G Os9 OS9 endoplasmic reticulum lectin involved_in IEA UniProt
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936646:1,832,434...1,860,200
Ensembl chrNW_004936646:1,832,015...1,859,576 		JBrowse link
G Rcn3 reticulocalbin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:3,382,467...3,396,111
Ensembl chrNW_004936664:3,382,494...3,395,705 		JBrowse link
G Rhbdd1 rhomboid domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936525:8,906,848...9,028,792
Ensembl chrNW_004936525:8,906,631...9,004,372 		JBrowse link
G Rnf103 ring finger protein 103 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936712:977,650...997,623
Ensembl chrNW_004936712:977,644...999,051 		JBrowse link
G Rnf121 ring finger protein 121 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936498:1,291,072...1,353,487
Ensembl chrNW_004936498:1,291,067...1,352,528 		JBrowse link
G Rnf139 ring finger protein 139 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936470:23,157,312...23,168,565
Ensembl chrNW_004936470:23,152,765...23,168,571 		JBrowse link
G Rnf145 ring finger protein 145 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936515:4,183,554...4,222,135
Ensembl chrNW_004936515:4,183,014...4,224,591 		JBrowse link
G Rnf175 ring finger protein 175 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936576:535,660...573,644
Ensembl chrNW_004936576:535,463...573,690 		JBrowse link
G Rnf185 ring finger protein 185 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936755:331,658...367,604
Ensembl chrNW_004936755:331,619...367,533 		JBrowse link
G Rnf5 ring finger protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,422,207...1,424,808
Ensembl chrNW_004936727:1,422,207...1,424,739 		JBrowse link
G Sdf2l1 stromal cell derived factor 2 like 1 acts_upstream_of_or_within ISO PMID:23444373 MGI PMID:23444373 RGD:8554667 NCBI chrNW_004936619:2,049,920...2,051,944
Ensembl chrNW_004936619:2,049,922...2,051,944 		JBrowse link
G Sec61b SEC61 translocon subunit beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:7,731,033...7,739,410
Ensembl chrNW_004936524:7,731,058...7,740,310 		JBrowse link
G Sel1l SEL1L adaptor subunit of SYVN1 ubiquitin ligase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936488:9,838,092...9,903,780
Ensembl chrNW_004936488:9,838,092...9,903,839 		JBrowse link
G Sel1l2 SEL1L2 adaptor subunit of SYVN1 ubiquitin ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936485:5,916,463...5,975,844
Ensembl chrNW_004936485:5,867,263...5,973,485 		JBrowse link
G Selenos selenoprotein S involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:2,589,773...2,600,837
Ensembl chrNW_004936483:2,589,828...2,599,987 		JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:1,599,453...1,616,480
Ensembl chrNW_004936588:1,598,164...1,616,599 		JBrowse link
G Stt3b STT3 oligosaccharyltransferase complex catalytic subunit B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:22,197,625...22,288,941
Ensembl chrNW_004936473:22,197,321...22,288,941 		JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:328,767...330,963
Ensembl chrNW_004936501:326,451...330,983 		JBrowse link
G Syvn1 synoviolin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21245296) MGI
TreeGrafter
Ensembl		 PMID:21245296 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936599:4,235,779...4,243,395
Ensembl chrNW_004936599:4,236,188...4,243,394 		JBrowse link
G Tmem129 transmembrane protein 129, E3 ubiquitin ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:21,665,955...21,670,667
Ensembl chrNW_004936477:21,665,275...21,670,668 		JBrowse link
G Tmem67 transmembrane protein 67 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936544:6,887,867...6,931,669
Ensembl chrNW_004936544:6,887,532...6,932,179 		JBrowse link
G Tmub1 transmembrane and ubiquitin like domain containing 1 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936527:6,504,471...6,506,572
Ensembl chrNW_004936527:6,504,455...6,506,656 		JBrowse link
G Tmub2 transmembrane and ubiquitin like domain containing 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936541:653,051...657,116
Ensembl chrNW_004936541:653,343...657,106 		JBrowse link
G Tor1a torsin family 1 member A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:17,012,661...17,020,657
Ensembl chrNW_004936487:17,011,670...17,020,699 		JBrowse link
G Trim13 tripartite motif containing 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936565:2,976,681...2,989,036
Ensembl chrNW_004936565:2,976,729...2,989,088 		JBrowse link
G Trim25 tripartite motif containing 25 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:5,979,320...5,997,632
Ensembl chrNW_004936490:5,979,425...5,997,639 		JBrowse link
G Ube2g2 ubiquitin conjugating enzyme E2 G2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11278356) MGI
Ensembl		 PMID:11278356 GO_REF:0000107 NCBI chrNW_004936778:1,414,410...1,440,949
Ensembl chrNW_004936778:1,414,348...1,440,950 		JBrowse link
G Ube2j1 ubiquitin conjugating enzyme E2 J1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21245296)
(PMID:24020373)		 MGI
Ensembl		 PMID:21245296 PMID:24020373 GO_REF:0000107 NCBI chrNW_004936510:2,864,321...2,887,588
Ensembl chrNW_004936510:2,864,356...2,887,885 		JBrowse link
G Ube2j2 ubiquitin conjugating enzyme E2 J2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936737:1,862,577...1,875,216
Ensembl chrNW_004936737:1,862,578...1,875,248 		JBrowse link
G Ube4b ubiquitination factor E4B involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936623:3,934,439...4,051,083
Ensembl chrNW_004936623:3,934,310...4,051,146 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936828:543,651...588,673
Ensembl chrNW_004936828:542,407...588,679 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936819:530,833...534,185
Ensembl chrNW_004936819:532,037...533,920 		JBrowse link
G Ubxn4 UBX domain protein 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936469:40,109,276...40,147,088
Ensembl chrNW_004936469:40,111,658...40,147,181 		JBrowse link
G Ubxn6 UBX domain protein 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,565,473...2,578,721
Ensembl chrNW_004936588:2,565,461...2,578,624 		JBrowse link
G Ubxn8 UBX domain protein 8 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936792:588,698...616,288
Ensembl chrNW_004936792:588,474...618,030 		JBrowse link
G Ufd1 ubiquitin recognition factor in ER associated degradation 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936619:3,395,130...3,419,704
Ensembl chrNW_004936619:3,395,687...3,419,472 		JBrowse link
G Uggt1 UDP-glucose glycoprotein glucosyltransferase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936469:43,140,469...43,247,486
Ensembl chrNW_004936469:43,140,455...43,247,539 		JBrowse link
G Uggt2 UDP-glucose glycoprotein glucosyltransferase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936472:13,868,865...14,051,269
Ensembl chrNW_004936472:13,868,979...14,050,770 		JBrowse link
G Umod uromodulin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28437467) Ensembl
MGI		 PMID:28437467 GO_REF:0000107 NCBI chrNW_004936501:5,833,391...5,846,021
Ensembl chrNW_004936501:5,833,391...5,846,164 		JBrowse link
G Usp19 ubiquitin specific peptidase 19 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936529:814,649...826,008
Ensembl chrNW_004936529:813,951...826,014 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:3,085,959...3,102,461
Ensembl chrNW_004936524:3,085,500...3,102,466 		JBrowse link
G Wfs1 wolframin ER transmembrane glycoprotein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:18,339,915...18,364,973
Ensembl chrNW_004936477:18,339,827...18,364,998 		JBrowse link
glycoprotein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 acts_upstream_of_or_within ISO (PMID:16431915) MGI PMID:16431915 NCBI chrNW_004936481:5,352,964...5,424,944
Ensembl chrNW_004936481:5,352,956...5,424,944 		JBrowse link
G Fbxo2 F-box protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15723043) TreeGrafter
MGI
Ensembl		 PMID:15723043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:521,235...526,151
Ensembl chrNW_004936474:521,123...526,959 		JBrowse link
G Fbxo27 F-box protein 27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936661:1,931,036...1,936,548
Ensembl chrNW_004936661:1,931,025...1,936,526 		JBrowse link
G Fbxo44 F-box protein 44 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:526,191...531,825
Ensembl chrNW_004936474:525,862...532,152 		JBrowse link
G Fbxo6 F-box protein 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15723043) TreeGrafter
MGI
Ensembl		 PMID:15723043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:531,873...538,596
Ensembl chrNW_004936474:533,254...542,907 		JBrowse link
G Glb1 galactosidase beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:23,348,431...23,440,271
Ensembl chrNW_004936473:23,348,416...23,440,196 		JBrowse link
G Manba mannosidase beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:3447593) TreeGrafter
MGI		 PMID:3447593 GO_REF:0000118 NCBI chrNW_004936520:616,762...715,010
Ensembl chrNW_004936520:616,826...713,793 		JBrowse link
G Nccrp1 NCCRP1, F-box associated domain containing involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936661:2,057,664...2,060,519
Ensembl chrNW_004936661:2,057,664...2,060,526 		JBrowse link
G Neu2 neuraminidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936525:4,177,085...4,179,692
Ensembl chrNW_004936525:4,177,085...4,179,692 		JBrowse link
G Neu4 neuraminidase 4 involved_in ISO (PMID:15213228), (PMID:15847605)
(PMID:19506080), (PMID:22393058)		 UniProt PMID:15213228 PMID:15847605 PMID:19506080 PMID:22393058 NCBI chrNW_004936745:172,983...175,470 JBrowse link
G Ngly1 N-glycanase 1 involved_in IEA TreeGrafter
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936473:17,243,763...17,294,609
Ensembl chrNW_004936473:17,239,966...17,294,791 		JBrowse link
G Stt3b STT3 oligosaccharyltransferase complex catalytic subunit B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:22,197,625...22,288,941
Ensembl chrNW_004936473:22,197,321...22,288,941 		JBrowse link
heparan sulfate proteoglycan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gns glucosamine (N-acetyl)-6-sulfatase involved_in ISO (PMID:15595925) FlyBase PMID:15595925 NCBI chrNW_004936545:2,974,627...3,010,586
Ensembl chrNW_004936545:2,971,870...3,010,566 		JBrowse link
G Gpc1 glypican 1 involved_in ISO (PMID:12732622) UniProt PMID:12732622 NCBI chrNW_004936745:1,118,732...1,127,169 JBrowse link
G Gusb glucuronidase beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:7,721,273...7,732,468
Ensembl chrNW_004936543:7,721,763...7,731,897 		JBrowse link
G Hgsnat heparan-alpha-glucosaminide N-acetyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936570:257,636...297,797
Ensembl chrNW_004936570:258,820...297,762 		JBrowse link
G Hpse heparanase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936738:1,308,350...1,341,421
Ensembl chrNW_004936738:1,308,345...1,343,145 		JBrowse link
G Ids iduronate 2-sulfatase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936513:62,966...88,844
Ensembl chrNW_004936513:62,993...88,774 		JBrowse link
G Idua alpha-L-iduronidase involved_in ISO (PMID:25854773)
(PMID:15979918)		 MGI PMID:15979918 PMID:25854773 NCBI chrNW_004936477:22,200,471...22,215,473
Ensembl chrNW_004936477:22,200,474...22,215,077 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:17,305,033...17,312,167
Ensembl chrNW_004936490:17,304,586...17,314,521 		JBrowse link
G Sgsh N-sulfoglucosamine sulfohydrolase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936594:4,195,217...4,203,802
Ensembl chrNW_004936594:4,193,983...4,204,008 		JBrowse link
insulin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsd cathepsin D involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936816:680,798...690,959
Ensembl chrNW_004936816:680,798...691,039 		JBrowse link
G Ide insulin degrading enzyme involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:2,230,477...2,318,562
Ensembl chrNW_004936601:2,230,283...2,318,752 		JBrowse link
G LOC101954488 CEA cell adhesion molecule 1 involved_in ISO PMID:11850617
(PMID:18544705)		 UniProt PMID:11850617 PMID:18544705 RGD:734645 NCBI chrNW_004936706:37,480...53,306 JBrowse link
lipoprotein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apob apolipoprotein B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15863839) Ensembl
MGI		 PMID:15863839 GO_REF:0000107 NCBI chrNW_004936493:10,509,118...10,549,144
Ensembl chrNW_004936493:10,509,118...10,549,144 		JBrowse link
G Apoe apolipoprotein E acts_upstream_of_or_within ISO (PMID:17720994) MGI PMID:17720994 NCBI chrNW_004936706:1,512,438...1,516,805 JBrowse link
G Atm ATM serine/threonine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15863839) Ensembl
MGI		 PMID:15863839 GO_REF:0000107 NCBI chrNW_004936551:359,134...534,672
Ensembl chrNW_004936551:359,362...532,211 		JBrowse link
G Ctsd cathepsin D involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936816:680,798...690,959
Ensembl chrNW_004936816:680,798...691,039 		JBrowse link
G Ldlr low density lipoprotein receptor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15805190), (PMID:9788969)
(PMID:15741654)		 MGI
Ensembl		 PMID:9788969 PMID:15741654 PMID:15805190 GO_REF:0000107 NCBI chrNW_004936659:1,259,405...1,300,545
Ensembl chrNW_004936659:1,259,369...1,302,294 		JBrowse link
G LOC101960702 lysosomal acid lipase/cholesteryl ester hydrolase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:4,975,296...5,008,938
Ensembl chrNW_004936601:4,975,211...5,008,962 		JBrowse link
low-density lipoprotein particle receptor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcsk9 proprotein convertase subtilisin/kexin type 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:6,271,339...6,300,202
Ensembl chrNW_004936522:6,272,507...6,299,917 		JBrowse link
lysosomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30930081) Ensembl
MGI		 PMID:30930081 GO_REF:0000107 NCBI chrNW_004936765:1,112,333...1,123,244
Ensembl chrNW_004936765:1,111,882...1,123,316 		JBrowse link
G Ccdc115 coiled-coil domain containing 115 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:41,083,713...41,087,106
Ensembl chrNW_004936469:41,083,738...41,087,087 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:11,955,334...11,967,338
Ensembl chrNW_004936501:11,955,184...11,967,436 		JBrowse link
G Cst7 cystatin F involved_in ISO (PMID:15752368), (PMID:22365146) ARUK-UCL PMID:15752368 PMID:22365146 NCBI chrNW_004936620:853,533...870,609
Ensembl chrNW_004936620:853,439...870,812 		JBrowse link
G Ctsh cathepsin H involved_in ISO (PMID:15752368) ARUK-UCL PMID:15752368 NCBI chrNW_004936471:37,135,200...37,156,081
Ensembl chrNW_004936471:37,131,817...37,156,476 		JBrowse link
G Dpp7 dipeptidyl peptidase 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28728022) Ensembl
MGI		 PMID:28728022 GO_REF:0000107 NCBI chrNW_004936669:868,889...872,982
Ensembl chrNW_004936669:869,067...872,885 		JBrowse link
G Grn granulin precursor acts_upstream_of_or_within ISO (PMID:28728022) MGI PMID:28728022 NCBI chrNW_004936541:793,548...800,271
Ensembl chrNW_004936541:793,523...800,217 		JBrowse link
G Lamp2 lysosomal associated membrane protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:9,584,221...9,622,330
Ensembl chrNW_004936479:9,584,221...9,610,420 		JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:27654426) MGI
Ensembl		 PMID:27654426 GO_REF:0000107 NCBI chrNW_004936642:2,745,889...2,833,286
Ensembl chrNW_004936642:2,801,908...2,832,830 		JBrowse link
G Mgat3 beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase acts_upstream_of ISO (PMID:25592972), (PMID:26467158) MGI PMID:25592972 PMID:26467158 NCBI chrNW_004936492:2,144,775...2,149,344
Ensembl chrNW_004936492:2,144,732...2,186,871 		JBrowse link
G Psap prosaposin acts_upstream_of_or_within ISO (PMID:12813057) MGI PMID:12813057 NCBI chrNW_004936521:6,975,844...7,009,460
Ensembl chrNW_004936521:6,975,770...7,009,136 		JBrowse link
G Slc17a9 solute carrier family 17 member 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24962569) Ensembl
UniProt		 PMID:24962569 GO_REF:0000107 NCBI chrNW_004936514:10,435,261...10,450,976
Ensembl chrNW_004936514:10,435,275...10,450,960 		JBrowse link
G Tmem106b transmembrane protein 106B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28728022) Ensembl
MGI		 PMID:28728022 GO_REF:0000107 NCBI chrNW_004936761:1,663,099...1,689,580
Ensembl chrNW_004936761:1,662,738...1,685,156 		JBrowse link
G Tmem199 transmembrane protein 199 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:4,512,866...4,517,404
Ensembl chrNW_004936538:4,511,941...4,517,498 		JBrowse link
G Tpp1 tripeptidyl peptidase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28728022) Ensembl
MGI		 PMID:28728022 GO_REF:0000107 NCBI chrNW_004936842:669,869...676,706
Ensembl chrNW_004936842:669,863...676,720 		JBrowse link
G Vps13a vacuolar protein sorting 13 homolog A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936503:12,606,019...12,857,807
Ensembl chrNW_004936503:12,606,014...12,858,005 		JBrowse link
mannoprotein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edem1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936577:4,486,617...4,516,379
Ensembl chrNW_004936577:4,486,885...4,513,555 		JBrowse link
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:5,352,964...5,424,944
Ensembl chrNW_004936481:5,352,956...5,424,944 		JBrowse link
G LOC101973161 ER degradation-enhancing alpha-mannosidase-like protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:5,578,267...5,605,512
Ensembl chrNW_004936561:5,578,236...5,605,810 		JBrowse link
G Man1b1 mannosidase alpha class 1B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:855,349...867,763
Ensembl chrNW_004936669:855,340...871,516 		JBrowse link
mannose trimming involved in glycoprotein ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Man1a1 mannosidase alpha class 1A member 1 involved_in ISO (PMID:27108681) UniProt PMID:27108681 NCBI chrNW_004936658:1,981,203...2,148,349
Ensembl chrNW_004936658:1,983,787...2,150,280 		JBrowse link
membrane protein proteolysis involved in retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hm13 histocompatibility minor 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:18,539,873...18,583,605
Ensembl chrNW_004936485:18,539,826...18,583,813 		JBrowse link
G Rhbdd1 rhomboid domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936525:8,906,848...9,028,792
Ensembl chrNW_004936525:8,906,631...9,004,372 		JBrowse link
mitochondrial protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afg1l AFG1 like ATPase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936564:4,553,758...4,755,126
Ensembl chrNW_004936564:4,553,732...4,757,616 		JBrowse link
G Bnip3 BCL2 interacting protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:18,449,371...18,460,435
Ensembl chrNW_004936486:18,448,494...18,455,927 		JBrowse link
G Bnip3l BCL2 interacting protein 3 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936757:499,485...523,494
Ensembl chrNW_004936757:499,147...523,541 		JBrowse link
G Pisd phosphatidylserine decarboxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936755:665,416...767,597
Ensembl chrNW_004936755:712,278...767,728 		JBrowse link
G Spata18 spermatogenesis associated 18 involved_in ISO (PMID:21264221), (PMID:21264228) UniProt PMID:21264221 PMID:21264228 NCBI chrNW_004936482:15,178,667...15,262,897 JBrowse link
G Yme1l1 YME1 like 1 ATPase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:2,306,937...2,352,671
Ensembl chrNW_004936484:2,306,760...2,353,507 		JBrowse link
mitochondrial protein quality control term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afg1l AFG1 like ATPase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936564:4,553,758...4,755,126
Ensembl chrNW_004936564:4,553,732...4,757,616 		JBrowse link
G Afg3l2 AFG3 like matrix AAA peptidase subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936626:150,953...189,980
Ensembl chrNW_004936626:150,974...189,218 		JBrowse link
G Oxa1l OXA1L mitochondrial inner membrane protein involved_in ISO (PMID:38199007) UniProt PMID:38199007 NCBI chrNW_004936722:1,524,116...1,528,659 JBrowse link
G Tmem126a transmembrane protein 126A involved_in ISO (PMID:38199007) UniProt PMID:38199007 NCBI chrNW_004936498:13,538,565...13,545,338 JBrowse link
modification-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isg15 ISG15 ubiquitin like modifier acts_upstream_of_or_within ISO (PMID:15485925) MGI PMID:15485925 NCBI chrNW_004936737:2,043,383...2,044,761 JBrowse link
G Uba7 ubiquitin like modifier activating enzyme 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15485925) Ensembl
MGI		 PMID:15485925 GO_REF:0000107 NCBI chrNW_004936529:1,412,196...1,421,216
Ensembl chrNW_004936529:1,412,194...1,421,197 		JBrowse link
G Ube2l6 ubiquitin conjugating enzyme E2 L6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15485925) Ensembl
MGI		 PMID:15485925 GO_REF:0000107 NCBI chrNW_004936581:4,943,742...4,954,281
Ensembl chrNW_004936581:4,943,887...4,954,241 		JBrowse link
negative regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsa cathepsin A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:7,131,263...7,136,775
Ensembl chrNW_004936514:7,130,848...7,136,536 		JBrowse link
G Snca synuclein alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936685:2,077,017...2,175,298
Ensembl chrNW_004936685:2,076,651...2,175,338 		JBrowse link
negative regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp11 aquaporin 11 involved_in ISO (PMID:18606867) UniProt PMID:18606867 NCBI chrNW_004936498:6,213,583...6,237,273 JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:1,599,453...1,616,480
Ensembl chrNW_004936588:1,598,164...1,616,599 		JBrowse link
G Svip small VCP interacting protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936654:3,452,781...3,459,161
Ensembl chrNW_004936654:3,453,043...3,459,219 		JBrowse link
G Ubxn1 UBX domain protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:584,519...587,863
Ensembl chrNW_004936581:584,315...591,612 		JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:7,969,271...7,978,537
Ensembl chrNW_004936493:7,971,960...7,985,314 		JBrowse link
G Usp14 ubiquitin specific peptidase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936550:640,331...675,703
Ensembl chrNW_004936550:635,963...675,832 		JBrowse link
G Usp25 ubiquitin specific peptidase 25 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936505:8,613,588...8,683,560
Ensembl chrNW_004936505:8,548,677...8,681,232 		JBrowse link
negative regulation of low-density lipoprotein particle receptor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa2 annexin A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:21,274,112...21,329,286
Ensembl chrNW_004936471:21,274,027...21,329,503 		JBrowse link
G Furin furin, paired basic amino acid cleaving enzyme involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:16,136,099...16,147,945
Ensembl chrNW_004936483:16,136,099...16,144,635 		JBrowse link
negative regulation of lysosomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Laptm4b lysosomal protein transmembrane 4 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:44,917,462...44,981,773
Ensembl chrNW_004936470:44,914,011...44,982,065 		JBrowse link
G Mgat3 beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO (PMID:25592972), (PMID:26467158) MGI PMID:25592972 PMID:26467158 NCBI chrNW_004936492:2,144,775...2,149,344
Ensembl chrNW_004936492:2,144,732...2,186,871 		JBrowse link
G Usp8 ubiquitin specific peptidase 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:12,463,189...12,524,148
Ensembl chrNW_004936471:12,463,120...12,520,674 		JBrowse link
G Vps35 VPS35 retromer complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:50,476...77,797
Ensembl chrNW_004936475:50,321...78,097 		JBrowse link
negative regulation of membrane protein ectodomain proteolysis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il10 interleukin 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:5,834,874...5,838,502
Ensembl chrNW_004936557:5,834,874...5,838,502 		JBrowse link
G Lrig2 leucine rich repeats and immunoglobulin like domains 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26651291) Ensembl
MGI		 PMID:26651291 GO_REF:0000107 NCBI chrNW_004936690:1,591,741...1,642,183
Ensembl chrNW_004936690:1,591,965...1,641,544 		JBrowse link
G Ptpn3 protein tyrosine phosphatase non-receptor type 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:3,436,114...3,547,316
Ensembl chrNW_004936559:3,436,651...3,547,275 		JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936502:13,345,936...13,350,170
Ensembl chrNW_004936502:13,345,832...13,350,248 		JBrowse link
G Timp2 TIMP metallopeptidase inhibitor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936594:3,232,433...3,244,241
Ensembl chrNW_004936594:3,232,355...3,244,241 		JBrowse link
G Timp3 TIMP metallopeptidase inhibitor 3 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936492:6,996,627...7,046,137
Ensembl chrNW_004936492:6,996,613...7,046,190 		JBrowse link
G Timp4 TIMP metallopeptidase inhibitor 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936602:1,488,993...1,496,108
Ensembl chrNW_004936602:1,489,545...1,495,478 		JBrowse link
negative regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:226,481...237,258
Ensembl chrNW_004936559:226,424...241,684 		JBrowse link
G F8a1 coagulation factor VIII associated 1 involved_in ISO (PMID:27815841) UniProt PMID:27815841 NCBI chrNW_004936927:234,162...236,881 JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:24,238,262...24,249,249
Ensembl chrNW_004936475:24,238,209...24,249,557 		JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:15,830,459...15,836,994
Ensembl chrNW_004936476:15,830,459...15,835,535 		JBrowse link
G Lamp3 lysosomal associated membrane protein 3 involved_in ISO (PMID:25681212) ParkinsonsUK-UCL PMID:25681212 NCBI chrNW_004936566:365,326...394,985 JBrowse link
G LOC101974307 protein SCO1 homolog, mitochondrial acts_upstream_of_or_within ISO (PMID:25683716) MGI PMID:25683716 NCBI chrNW_004936595:3,523,789...3,537,933
Ensembl chrNW_004936595:3,523,779...3,538,150 		JBrowse link
G Marchf7 membrane associated ring-CH-type finger 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:18,966,239...19,016,829
Ensembl chrNW_004936469:18,962,655...19,017,100 		JBrowse link
G Ophn1 oligophrenin 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936635:6,966...243,209
Ensembl chrNW_004936635:6,923...244,408 		JBrowse link
G Prkcg protein kinase C gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936994:87,525...105,125
Ensembl chrNW_004936994:87,519...105,134 		JBrowse link
G Psme3ip1 proteasome activator subunit 3 interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:9,266,778...9,294,173
Ensembl chrNW_004936475:9,268,337...9,294,163 		JBrowse link
G Psmf1 proteasome inhibitor subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:17,485,600...17,517,642
Ensembl chrNW_004936485:17,485,602...17,517,696 		JBrowse link
G Usp19 ubiquitin specific peptidase 19 involved_in ISO (PMID:25088257) ParkinsonsUK-UCL PMID:25088257 NCBI chrNW_004936529:814,649...826,008
Ensembl chrNW_004936529:813,951...826,014 		JBrowse link
negative regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag5 BAG cochaperone 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936621:1,573,237...1,578,257
Ensembl chrNW_004936621:1,574,033...1,575,376 		JBrowse link
G Bag6 BAG cochaperone 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,866,235...1,885,266
Ensembl chrNW_004936727:1,873,413...1,885,366 		JBrowse link
G Camlg calcium modulating ligand involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:1,979,029...1,988,281
Ensembl chrNW_004936597:1,978,974...1,989,851 		JBrowse link
G Ccar2 cell cycle and apoptosis regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:6,341,455...6,356,677
Ensembl chrNW_004936555:6,341,390...6,356,668 		JBrowse link
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chrNW_004936530:9,089,478...9,264,563
Ensembl chrNW_004936530:9,089,476...9,264,592 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chrNW_004936485:17,966,993...18,021,191 JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:10,030,408...10,073,576
Ensembl chrNW_004936475:10,033,717...10,075,511 		JBrowse link
G Csnk2b casein kinase 2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,857,596...1,862,551
Ensembl chrNW_004936727:1,857,596...1,862,002 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:15,516,348...15,526,380
Ensembl chrNW_004936485:15,516,302...15,526,376 		JBrowse link
G Eif3h eukaryotic translation initiation factor 3 subunit H involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:29,509,154...29,606,124
Ensembl chrNW_004936470:29,509,151...29,606,124 		JBrowse link
G Fhit fragile histidine triad diadenosine triphosphatase involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936473:397,140...1,424,805
Ensembl chrNW_004936473:676,237...1,424,506 		JBrowse link
G Gipc1 GIPC PDZ domain containing family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:3,019,829...3,030,280
Ensembl chrNW_004936659:3,012,012...3,026,883 		JBrowse link
G Hfe homeostatic iron regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936671:1,940,079...1,947,574
Ensembl chrNW_004936671:1,940,101...1,947,580 		JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:15,830,459...15,836,994
Ensembl chrNW_004936476:15,830,459...15,835,535 		JBrowse link
G Klhl40 kelch like family member 40 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24960163) TreeGrafter
MGI		 PMID:24960163 GO_REF:0000118 NCBI chrNW_004936695:2,417,938...2,424,622
Ensembl chrNW_004936695:2,414,573...2,424,702 		JBrowse link
G LOC101960348 E3 ubiquitin-protein ligase TRIM39 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936837:88,387...104,420
Ensembl chrNW_004936837:105,575...107,719
Ensembl chrNW_004936837:105,575...107,719 		JBrowse link
G Map1a microtubule associated protein 1A involved_in ISO (PMID:26609151) ARUK-UCL PMID:26609151 NCBI chrNW_004936471:6,685,565...6,706,860
Ensembl chrNW_004936471:6,685,728...6,705,477 		JBrowse link
G Mtm1 myotubularin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23695157) Ensembl
MGI		 PMID:23695157 GO_REF:0000107 NCBI chrNW_004936714:1,792,893...1,870,338
Ensembl chrNW_004936714:1,792,845...1,870,389 		JBrowse link
G N4bp1 NEDD4 binding protein 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936475:1,743,205...1,765,466
Ensembl chrNW_004936475:1,741,528...1,765,491 		JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:1,334,487...1,343,867
Ensembl chrNW_004936664:1,334,510...1,342,321 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936762:99,335...137,833
Ensembl chrNW_004936762:99,293...137,874 		JBrowse link
G Park7 Parkinsonism associated deglycase involved_in
acts_upstream_of		 IEA
ISO		 (PMID:17015834) Ensembl
ParkinsonsUK-UCL		 PMID:17015834 GO_REF:0000107 NCBI chrNW_004936623:2,422,780...2,436,817
Ensembl chrNW_004936623:2,422,833...2,436,817 		JBrowse link
G Pbk PDZ binding kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21715333) Ensembl
MGI		 PMID:21715333 GO_REF:0000107 NCBI chrNW_004936675:704,001...722,769
Ensembl chrNW_004936675:704,516...722,755 		JBrowse link
G Phf20l1 PHD finger protein 20 like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:16,406,293...16,475,384
Ensembl chrNW_004936470:16,406,653...16,475,586 		JBrowse link
G Rgs19 regulator of G protein signaling 19 involved_in ISO (PMID:11546783) BHF-UCL PMID:11546783 NCBI chrNW_004936514:11,251,293...11,256,461
Ensembl chrNW_004936514:11,251,202...11,255,994 		JBrowse link
G Rpl11 ribosomal protein L11 involved_in ISO (PMID:21804542) UniProt PMID:21804542 NCBI chrNW_004936474:8,855,782...8,858,287 JBrowse link
G Rybp RING1 and YY1 binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936603:3,618,715...3,693,007
Ensembl chrNW_004936603:3,618,795...3,690,410 		JBrowse link
G Senp1 SUMO specific peptidase 1 acts_upstream_of_or_within ISO (PMID:17981124) MGI PMID:17981124 NCBI chrNW_004936512:5,932,594...5,989,819
Ensembl chrNW_004936512:5,937,814...5,989,855 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16611981) Ensembl
MGI		 PMID:16611981 GO_REF:0000107 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599 		JBrowse link
G Smarcc1 SWI/SNF related BAF chromatin remodeling complex subunit C1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22285184) Ensembl
MGI		 PMID:22285184 GO_REF:0000107 NCBI chrNW_004936596:1,257,723...1,407,358
Ensembl chrNW_004936596:1,255,054...1,408,038 		JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in ISO (PMID:11278372) BHF-UCL PMID:11278372 NCBI chrNW_004936480:252,435...256,609
Ensembl chrNW_004936480:252,435...256,609 		JBrowse link
G Tlk2 tousled like kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:3,303,563...3,422,093
Ensembl chrNW_004936541:3,302,872...3,423,058 		JBrowse link
G Ttc36 tetratricopeptide repeat domain 36 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31537781) Ensembl
MGI		 PMID:31537781 GO_REF:0000107 NCBI chrNW_004936542:3,567,469...3,571,393
Ensembl chrNW_004936542:3,566,876...3,571,504 		JBrowse link
G Ubxn1 UBX domain protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936581:584,519...587,863
Ensembl chrNW_004936581:584,315...591,612 		JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936638:1,242,950...1,289,376
Ensembl chrNW_004936638:1,242,893...1,290,512 		JBrowse link
G Usp26 ubiquitin specific peptidase 26 involved_in ISO (PMID:28839133) UniProt PMID:28839133 NCBI chrNW_004936691:1,913,416...1,916,214 JBrowse link
G Usp38 ubiquitin specific peptidase 38 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:5,146,327...5,178,184
Ensembl chrNW_004936535:5,146,327...5,178,205 		JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:7,693,681...7,724,215
Ensembl chrNW_004936530:7,694,379...7,724,684 		JBrowse link
G Usp9x ubiquitin specific peptidase 9 X-linked involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936502:7,649,808...7,732,731
Ensembl chrNW_004936502:7,649,842...7,735,382 		JBrowse link
G Wac WW domain containing adaptor with coiled-coil involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936613:2,793,706...2,862,984
Ensembl chrNW_004936613:2,794,732...2,865,913 		JBrowse link
negative regulation of protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agap2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 acts_upstream_of_or_within ISO (PMID:18374643) MGI PMID:18374643 NCBI chrNW_004936646:1,865,154...1,881,614
Ensembl chrNW_004936646:1,865,395...1,876,453 		JBrowse link
G Atraid all-trans retinoic acid induced differentiation factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:5,333,151...5,338,157
Ensembl chrNW_004936493:5,333,169...5,338,116 		JBrowse link
G Azin1 antizyme inhibitor 1 involved_in ISO
IEA		 downregulates antizyme degradation of ODC RGD
Ensembl
TreeGrafter		 PMID:8631929 GO_REF:0000107 GO_REF:0000118 RGD:633334 NCBI chrNW_004936470:40,801,943...40,832,543
Ensembl chrNW_004936470:40,801,943...40,834,003 		JBrowse link
G Azin2 antizyme inhibitor 2 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:15,941,655...15,973,481
Ensembl chrNW_004936474:15,941,620...15,973,745 		JBrowse link
G Banp BTG3 associated nuclear protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936641:1,386,592...1,472,750
Ensembl chrNW_004936641:1,387,102...1,472,803 		JBrowse link
G Cdk2 cyclin dependent kinase 2 involved_in ISO (PMID:15750306) AgBase PMID:15750306 NCBI chrNW_004936646:379,849...385,648
Ensembl chrNW_004936646:379,842...385,877 		JBrowse link
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:13,345,443...13,355,841
Ensembl chrNW_004936490:13,345,443...13,355,841 		JBrowse link
G Dab2ip DAB2 interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:10,056,809...10,243,021
Ensembl chrNW_004936487:10,145,278...10,243,174 		JBrowse link
G Dedd death effector domain containing involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21135503) Ensembl
MGI		 PMID:21135503 GO_REF:0000107 NCBI chrNW_004936903:436,949...448,670
Ensembl chrNW_004936903:435,447...448,025 		JBrowse link
G Dysf dysferlin acts_upstream_of_or_within ISO (PMID:20724702) MGI PMID:20724702 NCBI chrNW_004936491:15,412,606...15,618,519
Ensembl chrNW_004936491:15,413,206...15,618,519 		JBrowse link
G Egfr epidermal growth factor receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936678:365,005...560,546
Ensembl chrNW_004936678:365,834...436,528 		JBrowse link
G Fbxo43 F-box protein 43 acts_upstream_of_or_within ISO (PMID:16966421) MGI PMID:16966421 NCBI chrNW_004936470:43,091,516...43,100,973
Ensembl chrNW_004936470:43,088,714...43,100,973 		JBrowse link
G Flna filamin A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936809:1,097,288...1,123,206
Ensembl chrNW_004936809:1,097,294...1,123,201 		JBrowse link
G Fmn2 formin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:9,832,790...10,169,488
Ensembl chrNW_004936526:9,833,128...10,169,267 		JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16841086) Ensembl
MGI		 PMID:16841086 GO_REF:0000107 NCBI chrNW_004936679:388,500...588,518
Ensembl chrNW_004936679:387,387...443,880 		JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15317856) MGI
Ensembl		 PMID:15317856 GO_REF:0000107 NCBI chrNW_004936530:8,286,101...8,612,183
Ensembl chrNW_004936530:8,287,574...8,608,343 		JBrowse link
G Grin2c glutamate ionotropic receptor NMDA type subunit 2C involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15317856) Ensembl
MGI		 PMID:15317856 GO_REF:0000107 NCBI chrNW_004936594:197,337...208,468
Ensembl chrNW_004936594:197,737...208,376 		JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936549:1,378,536...1,400,501
Ensembl chrNW_004936549:1,378,736...1,400,532 		JBrowse link
G Ins insulin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936816:1,002,137...1,003,357
Ensembl chrNW_004936816:1,002,137...1,003,357 		JBrowse link
G Irak3 interleukin 1 receptor associated kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:4,233,353...4,284,324
Ensembl chrNW_004936545:4,233,358...4,282,806 		JBrowse link
G LOC101955024 lanosterol 14-alpha demethylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936621:2,209,255...2,232,404
Ensembl chrNW_004936621:2,209,199...2,232,531 		JBrowse link
G LOC101964702 adhesion G protein-coupled receptor B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:9,247,749...9,313,230
Ensembl chrNW_004936470:9,248,319...9,313,230 		JBrowse link
G Mad2l1 mitotic arrest deficient 2 like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936662:92,421...98,531
Ensembl chrNW_004936662:92,328...99,517 		JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:538,703...542,901
Ensembl chrNW_004936474:538,625...542,901 		JBrowse link
G Mdm4 MDM4 regulator of p53 involved_in ISO (PMID:10608892) UniProt PMID:10608892 NCBI chrNW_004936567:268,151...299,494
Ensembl chrNW_004936567:268,151...299,494 		JBrowse link
G Mycbp2 MYC binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19398581) Ensembl
MGI		 PMID:19398581 GO_REF:0000107 NCBI chrNW_004936511:3,977,950...4,248,959
Ensembl chrNW_004936511:3,978,246...4,249,234 		JBrowse link
G Nell1 neural EGFL like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936654:1,591,016...2,392,496
Ensembl chrNW_004936654:1,591,847...2,394,692 		JBrowse link
G Nos2 nitric oxide synthase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:4,052,277...4,097,051
Ensembl chrNW_004936538:4,052,448...4,097,051 		JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:19,771,384...19,785,034
Ensembl chrNW_004936475:19,769,488...19,785,311 		JBrowse link
G Nrg1 neuregulin 1 acts_upstream_of_or_within ISO (PMID:20448149) MGI PMID:20448149 NCBI chrNW_004936766:1,104,841...1,306,368
Ensembl chrNW_004936766:1,104,728...1,305,972 		JBrowse link
G Park7 Parkinsonism associated deglycase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936623:2,422,780...2,436,817
Ensembl chrNW_004936623:2,422,833...2,436,817 		JBrowse link
G Phb1 prohibitin 1 involved_in ISO (PMID:24732013) UniProt PMID:24732013 NCBI chrNW_004936490:12,127,065...12,138,870
Ensembl chrNW_004936490:12,127,065...12,138,870 		JBrowse link
G Phf20l1 PHD finger protein 20 like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:16,406,293...16,475,384
Ensembl chrNW_004936470:16,406,653...16,475,586 		JBrowse link
G Pin1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:309,530...321,294
Ensembl chrNW_004936659:309,506...321,334 		JBrowse link
G Prkcg protein kinase C gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936994:87,525...105,125
Ensembl chrNW_004936994:87,519...105,134 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15923614) Ensembl
MGI		 PMID:15923614 GO_REF:0000107 NCBI chrNW_004936599:3,800,142...3,810,583
Ensembl chrNW_004936599:3,801,636...3,809,813 		JBrowse link
G Rgp1 RGP1 homolog, RAB6A GEF complex partner 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:3,742,590...3,746,371
Ensembl chrNW_004936524:3,742,596...3,750,742 		JBrowse link
G Ric1 RIC1 homolog, RAB6A GEF complex partner 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936539:290,429...404,928
Ensembl chrNW_004936539:290,416...404,881 		JBrowse link
G Rilp Rab interacting lysosomal protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:7,775,942...7,779,563
Ensembl chrNW_004936538:7,775,942...7,779,365 		JBrowse link
G Serpine2 serpin family E member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15509762)
(PMID:16319172)		 Ensembl
MGI		 PMID:15509762 PMID:16319172 GO_REF:0000107 NCBI chrNW_004936569:5,642,328...5,668,278
Ensembl chrNW_004936569:5,642,264...5,668,323 		JBrowse link
G Sf3b3 splicing factor 3b subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:23,038,424...23,086,134
Ensembl chrNW_004936475:23,037,687...23,086,188 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16611981) Ensembl
MGI		 PMID:16611981 GO_REF:0000107 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599 		JBrowse link
G Sirt2 sirtuin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:1,828,868...1,849,892
Ensembl chrNW_004936661:1,828,831...1,850,000 		JBrowse link
G Smad3 SMAD family member 3 involved_in ISO PMID:16690606
PMID:20097766		 CACAO
BHF-UCL		 PMID:16690606 PMID:20097766 RGD:11079190 RGD:15023472 NCBI chrNW_004936471:27,080,662...27,185,861
Ensembl chrNW_004936471:27,080,575...27,189,793 		JBrowse link
G Smad4 SMAD family member 4 involved_in ISO PMID:20097766 BHF-UCL PMID:20097766 RGD:11079190 NCBI chrNW_004936497:12,242,869...12,278,012
Ensembl chrNW_004936497:12,249,140...12,278,123 		JBrowse link
G Snx12 sorting nexin 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936762:523,641...534,646
Ensembl chrNW_004936762:523,564...542,757 		JBrowse link
G Snx3 sorting nexin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936564:4,472,171...4,520,732
Ensembl chrNW_004936564:4,471,652...4,520,785 		JBrowse link
G Tmem132a transmembrane protein 132A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:33324648) Ensembl
MGI		 PMID:33324648 GO_REF:0000107 NCBI chrNW_004936581:1,996,838...2,006,118
Ensembl chrNW_004936581:1,995,941...2,006,059 		JBrowse link
G Trim40 tripartite motif containing 40 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936723:897,213...909,263
Ensembl chrNW_004936723:896,054...909,263 		JBrowse link
negative regulation of proteolysis involved in protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Efna1 ephrin A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:4,654,503...4,660,950
Ensembl chrNW_004936580:4,654,503...4,660,966 		JBrowse link
G Epha4 EPH receptor A4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936569:3,539,269...3,670,322
Ensembl chrNW_004936569:3,540,053...3,670,348 		JBrowse link
G Ufsp2 UFM1 specific peptidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936554:3,926,046...3,945,575
Ensembl chrNW_004936554:3,925,982...3,948,450 		JBrowse link
negative regulation of retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUNH1orf116 chromosome unknown C1orf116 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:5,586,969...5,615,159
Ensembl chrNW_004936557:5,584,324...5,616,998
Ensembl chrNW_004936557:5,584,324...5,616,998 		JBrowse link
G Derl2 derlin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936677:2,328,783...2,342,068
Ensembl chrNW_004936677:2,328,904...2,342,080 		JBrowse link
G Derl3 derlin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:1,271,980...1,275,212
Ensembl chrNW_004936619:1,271,797...1,275,214 		JBrowse link
G Erlec1 endoplasmic reticulum lectin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:351,813...377,978
Ensembl chrNW_004936491:351,420...378,441 		JBrowse link
G Os9 OS9 endoplasmic reticulum lectin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:1,832,434...1,860,200
Ensembl chrNW_004936646:1,832,015...1,859,576 		JBrowse link
G Svip small VCP interacting protein involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936654:3,452,781...3,459,161
Ensembl chrNW_004936654:3,453,043...3,459,219 		JBrowse link
G Ubac2 UBA domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:11,118,227...11,278,636
Ensembl chrNW_004936472:11,118,218...11,277,301 		JBrowse link
G Ube2g2 ubiquitin conjugating enzyme E2 G2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936778:1,414,410...1,440,949
Ensembl chrNW_004936778:1,414,348...1,440,950 		JBrowse link
G Ube2j1 ubiquitin conjugating enzyme E2 J1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936510:2,864,321...2,887,588
Ensembl chrNW_004936510:2,864,356...2,887,885 		JBrowse link
negative regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pabpn1l PABPN1 like, cytoplasmic acts_upstream_of_or_within ISO (PMID:32558204) MGI PMID:32558204 NCBI chrNW_004936641:880,548...883,098
Ensembl chrNW_004936641:880,548...883,098 		JBrowse link
G Styx serine/threonine/tyrosine interacting protein involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936697:2,087,689...2,120,507
Ensembl chrNW_004936697:2,088,043...2,120,586 		JBrowse link
negative regulation of ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anks1a ankyrin repeat and sterile alpha motif domain containing 1A acts_upstream_of_or_within ISO (PMID:20100865) MGI PMID:20100865 NCBI chrNW_004936476:24,093,838...24,200,611
Ensembl chrNW_004936476:24,092,759...24,200,612 		JBrowse link
G Hfe homeostatic iron regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936671:1,940,079...1,947,574
Ensembl chrNW_004936671:1,940,101...1,947,580 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936592:3,800,619...3,934,347
Ensembl chrNW_004936592:3,809,452...3,934,327 		JBrowse link
G LOC101960348 E3 ubiquitin-protein ligase TRIM39 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936837:88,387...104,420
Ensembl chrNW_004936837:105,575...107,719
Ensembl chrNW_004936837:105,575...107,719 		JBrowse link
G Pdcl3 phosducin like 3 acts_upstream_of_or_within ISO (PMID:23792958) MGI PMID:23792958 NCBI chrNW_004936661:419,113...428,032 JBrowse link
G Pml PML nuclear body scaffold involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:33,135,186...33,173,218
Ensembl chrNW_004936471:33,135,164...33,177,666 		JBrowse link
G Prmt6 protein arginine methyltransferase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936731:1,262,335...1,268,200
Ensembl chrNW_004936731:1,266,738...1,267,865 		JBrowse link
G Psen1 presenilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:2,464,623...2,528,807
Ensembl chrNW_004936488:2,464,527...2,530,065 		JBrowse link
G Psen2 presenilin 2 involved_in ISO (PMID:20208556) BHF-UCL PMID:20208556 NCBI chrNW_004936526:3,584,194...3,611,719
Ensembl chrNW_004936526:3,584,188...3,614,074 		JBrowse link
G Qrich2 glutamine rich 2 involved_in ISO (PMID:30683861) UniProt PMID:30683861 NCBI chrNW_004936594:1,383,332...1,423,961 JBrowse link
G Rpl11 ribosomal protein L11 involved_in ISO (PMID:18560357) CAFA PMID:18560357 NCBI chrNW_004936474:8,855,782...8,858,287 JBrowse link
G Rpl23 ribosomal protein L23 involved_in ISO (PMID:15314173) CAFA PMID:15314173 NCBI chrNW_004936490:14,240,635...14,245,194
Ensembl chrNW_004936490:14,240,638...14,245,194 		JBrowse link
G Rpl5 ribosomal protein L5 involved_in ISO (PMID:18560357) CAFA PMID:18560357 NCBI chrNW_004936537:6,341,961...6,344,831 JBrowse link
G Rps7 ribosomal protein S7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936532:1,734,993...1,740,202
Ensembl chrNW_004936532:1,734,983...1,742,151 		JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:1,599,453...1,616,480
Ensembl chrNW_004936588:1,598,164...1,616,599 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19684112) Ensembl
MGI		 PMID:19684112 GO_REF:0000107 NCBI chrNW_004936600:3,270,662...3,381,722
Ensembl chrNW_004936600:3,268,260...3,381,781 		JBrowse link
G Svip small VCP interacting protein involved_in ISO PMID:17000876 ParkinsonsUK-UCL PMID:17000876 RGD:10047192 NCBI chrNW_004936654:3,452,781...3,459,161
Ensembl chrNW_004936654:3,453,043...3,459,219 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:17237821) ParkinsonsUK-UCL PMID:17237821 NCBI chrNW_004936762:189,710...271,759 JBrowse link
G Usp14 ubiquitin specific peptidase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936550:640,331...675,703
Ensembl chrNW_004936550:635,963...675,832 		JBrowse link
G Usp5 ubiquitin specific peptidase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936709:952,225...966,429
Ensembl chrNW_004936709:952,182...966,498 		JBrowse link
G Wnt1 Wnt family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16601693) Ensembl
MGI		 PMID:16601693 GO_REF:0000107 NCBI chrNW_004936512:6,781,001...6,785,358
Ensembl chrNW_004936512:6,780,882...6,785,358 		JBrowse link
nuclear protein quality control by the ubiquitin-proteasome system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akirin2 akirin 2 involved_in
acts_upstream_of_positive_effect		 IEA
ISO		 (PMID:34711951) Ensembl
UniProt		 PMID:34711951 GO_REF:0000107 NCBI chrNW_004936510:4,216,893...4,221,962
Ensembl chrNW_004936510:4,216,955...4,221,962 		JBrowse link
G Cul3 cullin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936569:6,067,230...6,131,467
Ensembl chrNW_004936569:6,065,367...6,132,316 		JBrowse link
G Klhl15 kelch like family member 15 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936624:552,220...593,546
Ensembl chrNW_004936624:552,177...591,578 		JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:41,222,782...41,345,755
Ensembl chrNW_004936470:41,252,951...41,344,134 		JBrowse link
oxidation-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lonp1 lon peptidase 1, mitochondrial involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936588:3,265,344...3,287,035
Ensembl chrNW_004936588:3,265,512...3,287,181 		JBrowse link
positive regulation of anaphase-promoting complex-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc20 cell division cycle 20 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:24,760,258...24,765,069
Ensembl chrNW_004936474:24,760,298...24,767,725 		JBrowse link
G Cdc20b cell division cycle 20B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936480:12,593,216...12,640,661
Ensembl chrNW_004936480:12,593,216...12,640,661 		JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936588:2,000,872...2,007,569
Ensembl chrNW_004936588:1,993,721...2,009,240 		JBrowse link
positive regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plk3 polo like kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:26,026,878...26,032,098
Ensembl chrNW_004936474:26,026,842...26,032,218 		JBrowse link
positive regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn3 ataxin 3 involved_in ISO (PMID:17000876) ParkinsonsUK-UCL PMID:17000876 NCBI chrNW_004936733:306,400...347,161
Ensembl chrNW_004936733:310,836...347,112 		JBrowse link
G Bag6 BAG cochaperone 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,866,235...1,885,266
Ensembl chrNW_004936727:1,873,413...1,885,366 		JBrowse link
G Bcap31 B cell receptor associated protein 31 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936809:582,689...614,800
Ensembl chrNW_004936809:582,649...615,079 		JBrowse link
G Cav1 caveolin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936589:2,504,235...2,536,778
Ensembl chrNW_004936589:2,504,224...2,537,170 		JBrowse link
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:9,091,115...9,102,101
Ensembl chrNW_004936475:9,091,176...9,102,109 		JBrowse link
G Rnf185 ring finger protein 185 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936755:331,658...367,604
Ensembl chrNW_004936755:331,619...367,533 		JBrowse link
G Rnft1 ring finger protein, transmembrane 1 involved_in IEA TreeGrafter
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:3,426,692...3,439,179
Ensembl chrNW_004936490:3,426,762...3,438,900 		JBrowse link
G Rnft2 ring finger protein, transmembrane 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936558:5,581,539...5,650,826
Ensembl chrNW_004936558:5,584,225...5,649,018 		JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:1,599,453...1,616,480
Ensembl chrNW_004936588:1,598,164...1,616,599 		JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:328,767...330,963
Ensembl chrNW_004936501:326,451...330,983 		JBrowse link
G Tmem259 transmembrane protein 259 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936588:440,460...449,440
Ensembl chrNW_004936588:441,135...449,444 		JBrowse link
G Tmem67 transmembrane protein 67 ISO RGD PMID:19815549 RGD:8554391 NCBI chrNW_004936544:6,887,867...6,931,669
Ensembl chrNW_004936544:6,887,532...6,932,179 		JBrowse link
G Tmx1 thioredoxin related transmembrane protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:14,432,971...14,447,380
Ensembl chrNW_004936495:14,431,137...14,447,476 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936828:543,651...588,673
Ensembl chrNW_004936828:542,407...588,679 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936819:530,833...534,185
Ensembl chrNW_004936819:532,037...533,920 		JBrowse link
G Usp13 ubiquitin specific peptidase 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936566:3,416,468...3,522,127
Ensembl chrNW_004936566:3,416,389...3,522,133 		JBrowse link
G Wfs1 wolframin ER transmembrane glycoprotein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:18,339,915...18,364,973
Ensembl chrNW_004936477:18,339,827...18,364,998 		JBrowse link
positive regulation of low-density lipoprotein particle receptor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca2 ATP binding cassette subfamily A member 2 acts_upstream_of
involved_in		 ISO
IEA		 (PMID:21810484) ARUK-UCL
Ensembl		 PMID:21810484 GO_REF:0000107 NCBI chrNW_004936669:922,978...941,996
Ensembl chrNW_004936669:926,622...942,167 		JBrowse link
G Apoe apolipoprotein E involved_in ISO (PMID:15950758) BHF-UCL PMID:15950758 NCBI chrNW_004936706:1,512,438...1,516,805 JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:6,271,339...6,300,202
Ensembl chrNW_004936522:6,272,507...6,299,917 		JBrowse link
positive regulation of lysosomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpm heterogeneous nuclear ribonucleoprotein M involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:5,241,276...5,283,952
Ensembl chrNW_004936588:5,222,509...5,239,890
Ensembl chrNW_004936588:5,222,509...5,239,890 		JBrowse link
G Ldlr low density lipoprotein receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:1,259,405...1,300,545
Ensembl chrNW_004936659:1,259,369...1,302,294 		JBrowse link
G Lrp1 LDL receptor related protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:1,326,900...1,407,236
Ensembl chrNW_004936646:1,327,374...1,406,456 		JBrowse link
G Lrp2 LDL receptor related protein 2 involved_in ISO (PMID:9228033) ARUK-UCL PMID:9228033 NCBI chrNW_004936469:10,245,001...10,438,933
Ensembl chrNW_004936469:10,244,881...10,438,935 		JBrowse link
positive regulation of membrane protein ectodomain proteolysis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam8 ADAM metallopeptidase domain 8 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936486:19,389,925...19,403,577
Ensembl chrNW_004936486:19,391,324...19,402,332 		JBrowse link
G Adam9 ADAM metallopeptidase domain 9 involved_in ISO (PMID:9857183) BHF-UCL PMID:9857183 NCBI chrNW_004936710:2,301,470...2,388,533
Ensembl chrNW_004936710:2,301,730...2,387,695 		JBrowse link
G Adra2a adrenoceptor alpha 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:1,837,785...1,841,019
Ensembl chrNW_004936486:1,838,176...1,839,630 		JBrowse link
G Apoe apolipoprotein E involved_in ISO (PMID:15950758)
(PMID:25015123)		 BHF-UCL
ARUK-UCL		 PMID:15950758 PMID:25015123 NCBI chrNW_004936706:1,512,438...1,516,805 JBrowse link
G App amyloid beta precursor protein involved_in ISO (PMID:25015123) ARUK-UCL PMID:25015123 NCBI chrNW_004936640:1,549,977...1,787,436
Ensembl chrNW_004936640:1,550,167...1,787,286 		JBrowse link
G Gpld1 glycosylphosphatidylinositol specific phospholipase D1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936671:780,173...827,628
Ensembl chrNW_004936671:782,135...827,771 		JBrowse link
G Ifng interferon gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:6,139,130...6,144,543
Ensembl chrNW_004936545:6,139,116...6,148,452 		JBrowse link
G Il1b interleukin 1 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:1,251,678...1,256,807
Ensembl chrNW_004936783:1,252,158...1,257,165 		JBrowse link
G Nrdc nardilysin convertase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:9,041,204...9,129,674
Ensembl chrNW_004936522:9,041,111...9,129,327 		JBrowse link
G Pacsin3 protein kinase C and casein kinase substrate in neurons 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:1,988,839...1,995,597
Ensembl chrNW_004936562:1,989,662...1,995,580 		JBrowse link
G Rgma repulsive guidance molecule BMP co-receptor a involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26651291) Ensembl
MGI		 PMID:26651291 GO_REF:0000107 NCBI chrNW_004936483:9,753,112...9,792,817
Ensembl chrNW_004936483:9,766,275...9,793,001 		JBrowse link
G Sh3d19 SH3 domain containing 19 involved_in ISO (PMID:15280379) BHF-UCL PMID:15280379 NCBI chrNW_004936689:1,147,350...1,241,202
Ensembl chrNW_004936689:1,147,353...1,239,064 		JBrowse link
G Snx33 sorting nexin 33 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:34,414,086...34,425,236
Ensembl chrNW_004936471:34,414,474...34,428,784 		JBrowse link
G Snx9 sorting nexin 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:9,736,255...9,804,841
Ensembl chrNW_004936489:9,736,242...9,804,874 		JBrowse link
G Tnf tumor necrosis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,936,066...1,937,766
Ensembl chrNW_004936727:1,936,066...1,937,766 		JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:908,414...935,765
Ensembl chrNW_004936474:908,485...934,177 		JBrowse link
positive regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag2 BAG cochaperone 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:4,131,159...4,142,357
Ensembl chrNW_004936476:4,129,013...4,142,357 		JBrowse link
G Dab2ip DAB2 interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:10,056,809...10,243,021
Ensembl chrNW_004936487:10,145,278...10,243,174 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:15,516,348...15,526,380
Ensembl chrNW_004936485:15,516,302...15,526,376 		JBrowse link
G Ecscr endothelial cell surface expressed chemotaxis and apoptosis regulator acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19416853) MGI
TreeGrafter
Ensembl		 PMID:19416853 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936531:8,533,926...8,542,516
Ensembl chrNW_004936531:8,532,353...8,542,551 		JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936689:2,261,163...2,449,951
Ensembl chrNW_004936689:2,259,477...2,344,764 		JBrowse link
G Fmr1 Fragile X messenger ribonucleoprotein 1 involved_in ISO (PMID:24709664) UniProt PMID:24709664 NCBI chrNW_004936513:1,290,038...1,327,850
Ensembl chrNW_004936513:1,289,558...1,327,856 		JBrowse link
G Kcne2 potassium voltage-gated channel subfamily E regulatory subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:8,067,009...8,072,383
Ensembl chrNW_004936500:8,068,188...8,068,553 		JBrowse link
G Neurl3 neuralized E3 ubiquitin protein ligase 3 involved_in ISO (PMID:38667302) UniProt PMID:38667302 NCBI chrNW_004936744:499,897...501,976 JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:11,998,064...11,999,431
Ensembl chrNW_004936501:11,997,834...11,999,709 		JBrowse link
G Oaz1 ornithine decarboxylase antizyme 1 ISO RGD PMID:12359729 RGD:7245486 NCBI chrNW_004936588:1,356,769...1,361,037
Ensembl chrNW_004936588:1,356,769...1,361,037 		JBrowse link
G Osbpl7 oxysterol binding protein like 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:13,491,704...13,506,742
Ensembl chrNW_004936490:13,491,544...13,506,768 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:12,118,538...12,913,664
Ensembl chrNW_004936489:12,120,678...13,327,872 		JBrowse link
G Psmc2 proteasome 26S subunit, ATPase 2 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004936479:20,150,738...20,167,765
Ensembl chrNW_004936479:20,148,632...20,168,130 		JBrowse link
G Rnf40 ring finger protein 40 ISO RGD PMID:12121982 RGD:633892 NCBI chrNW_004936501:13,154,963...13,167,211
Ensembl chrNW_004936501:13,154,999...13,167,199 		JBrowse link
G Tmtc3 transmembrane O-mannosyltransferase targeting cadherins 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936507:5,305,489...5,349,828
Ensembl chrNW_004936507:5,305,460...5,352,337 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:18,659,725...18,665,406
Ensembl chrNW_004936476:18,659,815...18,663,940 		JBrowse link
positive regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15937334) MGI
Ensembl		 PMID:15937334 GO_REF:0000107 NCBI chrNW_004936621:620,163...639,115
Ensembl chrNW_004936621:620,074...639,093 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO (PMID:23152632) MGI PMID:23152632 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256 		JBrowse link
G Aurka aurora kinase A acts_upstream_of_or_within ISO (PMID:17060449) MGI PMID:17060449 NCBI chrNW_004936875:295,238...310,457 JBrowse link
G Axin1 axin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16601693) MGI
Ensembl
TreeGrafter		 PMID:16601693 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936501:599,963...633,837
Ensembl chrNW_004936501:599,919...633,873 		JBrowse link
G Axin2 axin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936541:7,155,963...7,242,466
Ensembl chrNW_004936541:7,211,985...7,242,470 		JBrowse link
G Bag2 BAG cochaperone 2 NOT|involved_in ISO (PMID:19228967) ARUK-UCL PMID:19228967 NCBI chrNW_004936476:4,131,159...4,142,357
Ensembl chrNW_004936476:4,129,013...4,142,357 		JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22302990) MGI
Ensembl		 PMID:22302990 GO_REF:0000107 NCBI chrNW_004936662:1,081,237...1,116,719
Ensembl chrNW_004936662:1,080,295...1,116,636 		JBrowse link
G Cbfa2t3 CBFA2/RUNX1 partner transcriptional co-repressor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:857,483...875,527
Ensembl chrNW_004936641:810,074...875,534 		JBrowse link
G Chfr checkpoint with forkhead and ring finger domains acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22285184) MGI
Ensembl		 PMID:22285184 GO_REF:0000107 NCBI chrNW_004936660:2,725,019...2,754,564
Ensembl chrNW_004936660:2,724,989...2,754,586 		JBrowse link
G Clu clusterin involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936675:499,745...513,515
Ensembl chrNW_004936675:499,199...513,836 		JBrowse link
G Cop1 COP1 E3 ubiquitin ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:12,262,415...12,437,627
Ensembl chrNW_004936481:12,262,409...12,437,571 		JBrowse link
G Csnk1a1 casein kinase 1 alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:5,351,354...5,394,856
Ensembl chrNW_004936504:5,351,029...5,396,034 		JBrowse link
G Csnk1d casein kinase 1 delta involved_in ISO (PMID:19414593) UniProt PMID:19414593 NCBI chrNW_004936594:5,720,887...5,743,206
Ensembl chrNW_004936594:5,724,406...5,743,180 		JBrowse link
G Dab2 DAB adaptor protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:2,915,819...2,936,474
Ensembl chrNW_004936518:2,915,764...2,937,875 		JBrowse link
G Dda1 DET1 and DDB1 associated 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936596:3,545,669...3,554,134
Ensembl chrNW_004936596:3,545,669...3,554,134 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:15,516,348...15,526,380
Ensembl chrNW_004936485:15,516,302...15,526,376 		JBrowse link
G Det1 DET1 partner of COP1 E3 ubiquitin ligase involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936483:14,535,771...14,556,236
Ensembl chrNW_004936483:14,535,800...14,556,248 		JBrowse link
G Dnajb2 DnaJ heat shock protein family (Hsp40) member B2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936569:1,689,926...1,697,179
Ensembl chrNW_004936569:1,689,507...1,698,954 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936737:1,797,348...1,811,043
Ensembl chrNW_004936737:1,797,326...1,810,286 		JBrowse link
G Fbxo22 F-box protein 22 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19319192) Ensembl
TreeGrafter
MGI		 PMID:19319192 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:36,232,749...36,255,772
Ensembl chrNW_004936471:36,232,583...36,255,672 		JBrowse link
G Fbxw8 F-box and WD repeat domain containing 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936558:5,423,815...5,523,649
Ensembl chrNW_004936558:5,421,976...5,523,676 		JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:534,042...536,289
Ensembl chrNW_004936595:533,977...536,271 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23707074) ParkinsonsUK-UCL
Ensembl		 PMID:23707074 GO_REF:0000107 NCBI chrNW_004936580:4,715,869...4,720,752
Ensembl chrNW_004936580:4,715,408...4,720,798 		JBrowse link
G Gclc glutamate-cysteine ligase catalytic subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17189825) Ensembl
MGI		 PMID:17189825 GO_REF:0000107 NCBI chrNW_004936476:7,371,270...7,418,756
Ensembl chrNW_004936476:7,371,149...7,418,958 		JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936706:266,462...277,256
Ensembl chrNW_004936706:269,126...277,256 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22660580) Ensembl
MGI
TreeGrafter		 PMID:22660580 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936536:6,730,070...6,893,818
Ensembl chrNW_004936536:6,730,062...6,894,303 		JBrowse link
G Hamp hepcidin antimicrobial peptide involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936570:1,009,344...1,010,654
Ensembl chrNW_004936570:1,009,312...1,010,686 		JBrowse link
G Hspbp1 HSPA (Hsp70) binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936886:526,334...541,931
Ensembl chrNW_004936886:526,287...542,606 		JBrowse link
G Il33 interleukin 33 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22660580) Ensembl
MGI		 PMID:22660580 GO_REF:0000107 NCBI chrNW_004936539:763,755...791,461
Ensembl chrNW_004936539:623,248...791,470 		JBrowse link
G Klhl40 kelch like family member 40 involved_in ISO (PMID:25940086) UniProt PMID:25940086 NCBI chrNW_004936695:2,417,938...2,424,622
Ensembl chrNW_004936695:2,414,573...2,424,702 		JBrowse link
G LOC101955831 heat shock 70 kDa protein 1 involved_in ISO (PMID:24613385) UniProt PMID:24613385 NCBI chrNW_004936727:1,718,952...1,721,691 JBrowse link
G LOC101956126 heat shock 70 kDa protein 1 involved_in ISO (PMID:24613385) UniProt PMID:24613385 NCBI chrNW_004936727:1,732,323...1,735,128 JBrowse link
G LOC101967743 casein kinase I involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:2,904,622...2,925,904
Ensembl chrNW_004936492:2,907,015...2,928,418 		JBrowse link
G LOC101969625 DET1 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936677:2,971,964...2,973,437 JBrowse link
G LOC101970831 serotransferrin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:6,917,762...6,947,512
Ensembl chrNW_004936529:6,855,958...6,947,394 		JBrowse link
G Lrrk2 leucine rich repeat kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936607:628,469...761,117
Ensembl chrNW_004936607:626,991...761,123 		JBrowse link
G Mapk8 mitogen-activated protein kinase 8 involved_in ISO (PMID:29153991) UniProt PMID:29153991 NCBI chrNW_004936728:1,775,746...1,893,895
Ensembl chrNW_004936728:1,775,641...1,893,907 		JBrowse link
G Mapk9 mitogen-activated protein kinase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936739:551,678...602,027
Ensembl chrNW_004936739:551,629...602,047 		JBrowse link
G Mdm2 MDM2 proto-oncogene involved_in ISO (PMID:11278372) BHF-UCL PMID:11278372 NCBI chrNW_004936545:6,709,903...6,732,334 JBrowse link
G Nkd2 NKD inhibitor of WNT signaling pathway 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936815:669,389...701,402
Ensembl chrNW_004936815:669,389...701,402 		JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:1,334,487...1,343,867
Ensembl chrNW_004936664:1,334,510...1,342,321 		JBrowse link
G Nub1 negative regulator of ubiquitin like proteins 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:6,726,363...6,756,445
Ensembl chrNW_004936527:6,726,357...6,755,318 		JBrowse link
G Pabir1 PP2A Aalpha (PPP2R1A) and B55A (PPP2R2A) interacting phosphatase regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936503:5,095,986...5,097,274
Ensembl chrNW_004936503:5,096,112...5,096,963 		JBrowse link
G Paqr3 progestin and adipoQ receptor family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936676:2,497,219...2,520,493
Ensembl chrNW_004936676:2,497,728...2,520,499 		JBrowse link
G Pias1 protein inhibitor of activated STAT 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:27,925,153...28,055,632
Ensembl chrNW_004936471:27,925,153...28,055,632 		JBrowse link
G Plk1 polo like kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:8,321,415...8,332,414
Ensembl chrNW_004936501:8,321,305...8,332,424 		JBrowse link
G Plk2 polo like kinase 2 ISO RGD PMID:18723513 RGD:7241135 NCBI chrNW_004936480:9,680,461...9,686,593
Ensembl chrNW_004936480:9,680,449...9,686,595 		JBrowse link
G Plk3 polo like kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:26,026,878...26,032,098
Ensembl chrNW_004936474:26,026,842...26,032,218 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:1,165,159...1,270,138
Ensembl chrNW_004936512:1,163,615...1,270,255 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:12,118,538...12,913,664
Ensembl chrNW_004936489:12,120,678...13,327,872 		JBrowse link
G Psen1 presenilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:2,464,623...2,528,807
Ensembl chrNW_004936488:2,464,527...2,530,065 		JBrowse link
G Psen2 presenilin 2 involved_in ISO (PMID:20208556) BHF-UCL PMID:20208556 NCBI chrNW_004936526:3,584,194...3,611,719
Ensembl chrNW_004936526:3,584,188...3,614,074 		JBrowse link
G Psmd10 proteasome 26S subunit, non-ATPase 10 involved_in ISO (PMID:16023600) UniProt PMID:16023600 NCBI chrNW_004936499:6,691,758...6,698,515
Ensembl chrNW_004936499:6,691,476...6,702,986 		JBrowse link
G Rack1 receptor for activated C kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936826:748,256...753,460
Ensembl chrNW_004936826:747,291...753,442 		JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:2,001,356...2,007,520
Ensembl chrNW_004936659:2,001,301...2,010,215 		JBrowse link
G Rbx1 ring-box 1 involved_in ISO (PMID:14739464) UniProt PMID:14739464 NCBI chrNW_004936492:872,316...890,860
Ensembl chrNW_004936492:873,576...890,835 		JBrowse link
G Rchy1 ring finger and CHY zinc finger domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936598:436,559...453,137
Ensembl chrNW_004936598:436,260...453,137 		JBrowse link
G Rnf180 ring finger protein 180 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18363970), (PMID:23926250) TreeGrafter
MGI
Ensembl		 PMID:18363970 PMID:23926250 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936480:4,809,103...4,834,977
Ensembl chrNW_004936480:4,659,751...4,834,972 		JBrowse link
G Sh3rf2 SH3 domain containing ring finger 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936504:8,602,116...8,731,099
Ensembl chrNW_004936504:8,599,157...8,731,118 		JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673
Ensembl chrNW_004936521:10,296,097...10,322,215 		JBrowse link
G Sirt2 sirtuin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:1,828,868...1,849,892
Ensembl chrNW_004936661:1,828,831...1,850,000 		JBrowse link
G Sirt6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,387,162...2,394,066
Ensembl chrNW_004936588:2,386,977...2,394,096 		JBrowse link
G Socs4 suppressor of cytokine signaling 4 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936697:110,637...129,767
Ensembl chrNW_004936697:110,952...129,686 		JBrowse link
G Socs5 suppressor of cytokine signaling 5 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936508:5,531,002...5,588,022
Ensembl chrNW_004936508:5,531,002...5,587,549 		JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:328,767...330,963
Ensembl chrNW_004936501:326,451...330,983 		JBrowse link
G Sumo1 small ubiquitin like modifier 1 involved_in ISO (PMID:18408734) UniProt PMID:18408734 NCBI chrNW_004936726:1,402,977...1,413,974
Ensembl chrNW_004936726:1,399,050...1,429,205 		JBrowse link
G Sumo2 small ubiquitin like modifier 2 involved_in ISO (PMID:18408734) UniProt PMID:18408734 NCBI chrNW_004936594:469,616...484,375 JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:15053879) BHF-UCL PMID:15053879 NCBI chrNW_004936762:189,710...271,759 JBrowse link
G Trib1 tribbles pseudokinase 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936470:22,401,713...22,408,808
Ensembl chrNW_004936470:22,401,379...22,409,490 		JBrowse link
G Trib2 tribbles pseudokinase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936532:8,354,205...8,377,924 JBrowse link
G Trib3 tribbles pseudokinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936485:18,077,850...18,082,817
Ensembl chrNW_004936485:18,077,850...18,083,553 		JBrowse link
G Ube2v2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chrNW_004936590:4,637,858...4,670,789
Ensembl chrNW_004936590:4,637,065...4,670,827 		JBrowse link
G Usp5 ubiquitin specific peptidase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936709:952,225...966,429
Ensembl chrNW_004936709:952,182...966,498 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:3,085,959...3,102,461
Ensembl chrNW_004936524:3,085,500...3,102,466 		JBrowse link
G Zer1 zyg-11 related cell cycle regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:16,210,738...16,239,686
Ensembl chrNW_004936487:16,210,707...16,239,660 		JBrowse link
G Zfand2a zinc finger AN1-type containing 2A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16973439) MGI
Ensembl		 PMID:16973439 GO_REF:0000107 NCBI chrNW_004936754:1,353,482...1,363,651
Ensembl chrNW_004936754:1,353,342...1,363,720 		JBrowse link
G Zyg11b zyg-11 family member B, cell cycle regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:8,197,557...8,266,061
Ensembl chrNW_004936522:8,198,098...8,266,109 		JBrowse link
positive regulation of protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amer1 APC membrane recruitment protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936635:3,465,473...3,482,311
Ensembl chrNW_004936635:3,478,598...3,482,008 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16478791)
(PMID:12952940)		 MGI
Ensembl		 PMID:12952940 PMID:16478791 GO_REF:0000107 NCBI chrNW_004936531:6,899,580...7,019,016
Ensembl chrNW_004936531:6,899,788...7,019,453 		JBrowse link
G Asb11 ankyrin repeat and SOCS box containing 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936470:4,701,670...4,728,527
Ensembl chrNW_004936470:4,701,681...4,728,555 		JBrowse link
G Asb12 ankyrin repeat and SOCS box containing 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936635:3,447,347...3,453,762
Ensembl chrNW_004936635:3,447,345...3,453,762 		JBrowse link
G Asb13 ankyrin repeat and SOCS box containing 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936484:8,855,456...8,873,940
Ensembl chrNW_004936484:8,855,399...8,875,018 		JBrowse link
G Asb16 ankyrin repeat and SOCS box containing 16 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936541:638,266...646,463
Ensembl chrNW_004936541:638,319...646,167 		JBrowse link
G Asb18 ankyrin repeat and SOCS box containing 18 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936525:1,790,901...1,854,724
Ensembl chrNW_004936525:1,790,901...1,853,508 		JBrowse link
G Asb5 ankyrin repeat and SOCS box containing 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936516:6,811,144...6,903,258
Ensembl chrNW_004936516:6,811,130...6,903,045 		JBrowse link
G Asb9 ankyrin repeat and SOCS box containing 9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17148442) MGI
Ensembl
TreeGrafter		 PMID:17148442 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936470:4,660,417...4,692,175
Ensembl chrNW_004936470:4,660,443...4,692,173 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase ISO RGD PMID:16874114 RGD:2301238 NCBI chrNW_004936745:291,311...308,469
Ensembl chrNW_004936745:292,746...307,746 		JBrowse link
G Atg7 autophagy related 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256 		JBrowse link
G Axin1 axin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:599,963...633,837
Ensembl chrNW_004936501:599,919...633,873 		JBrowse link
G C4bpb complement component 4 binding protein beta involved_in ISO (PMID:22333221) BHF-UCL PMID:22333221 NCBI chrNW_004936557:5,546,692...5,561,531 JBrowse link
G Cblb Cbl proto-oncogene B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14973438) Ensembl
MGI		 PMID:14973438 GO_REF:0000107 NCBI chrNW_004936701:1,157,790...1,353,375
Ensembl chrNW_004936701:1,157,797...1,353,388 		JBrowse link
G Cdkn1b cyclin dependent kinase inhibitor 1B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19056892) MGI
Ensembl		 PMID:19056892 GO_REF:0000107 NCBI chrNW_004936587:4,573,166...4,578,480
Ensembl chrNW_004936587:4,572,728...4,578,461 		JBrowse link
G Crebrf CREB3 regulatory factor involved_in ISO (PMID:18391022) UniProt PMID:18391022 NCBI chrNW_004936609:2,460,379...2,498,614
Ensembl chrNW_004936609:2,449,601...2,498,661 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISO (PMID:20625391) UniProt PMID:20625391 NCBI chrNW_004936485:17,966,993...18,021,191 JBrowse link
G Cul4a cullin 4A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:409,083...432,442
Ensembl chrNW_004936472:408,659...432,379 		JBrowse link
G Cul4b cullin 4B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18602923) Ensembl
MGI		 PMID:18602923 GO_REF:0000107 NCBI chrNW_004936479:9,490,717...9,535,998
Ensembl chrNW_004936479:9,479,133...9,534,262 		JBrowse link
G Dab2ip DAB2 interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:10,056,809...10,243,021
Ensembl chrNW_004936487:10,145,278...10,243,174 		JBrowse link
G Dact1 dishevelled binding antagonist of beta catenin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16446366) MGI
Ensembl		 PMID:16446366 GO_REF:0000107 NCBI chrNW_004936495:3,017,029...3,026,759
Ensembl chrNW_004936495:3,017,150...3,025,684 		JBrowse link
G Dcaf1 DDB1 and CUL4 associated factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:2,786,252...2,856,516
Ensembl chrNW_004936529:2,786,252...2,856,967 		JBrowse link
G Ddb1 damage specific DNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:1,710,382...1,742,598
Ensembl chrNW_004936581:1,710,382...1,742,598 		JBrowse link
G Dtl denticleless E3 ubiquitin protein ligase homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:1,347,991...1,389,836
Ensembl chrNW_004936557:1,347,991...1,389,836 		JBrowse link
G Egln2 egl-9 family hypoxia inducible factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:3,061,391...3,070,219
Ensembl chrNW_004936661:3,061,308...3,070,192 		JBrowse link
G Ezr ezrin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:10,413,374...10,457,771
Ensembl chrNW_004936489:10,412,710...10,458,201 		JBrowse link
G Faf1 Fas associated factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:9,774,943...10,160,987
Ensembl chrNW_004936522:9,784,203...10,161,774 		JBrowse link
G Fbxl5 F-box and leucine rich repeat protein 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21907140) MGI
Ensembl		 PMID:21907140 GO_REF:0000107 NCBI chrNW_004936477:12,279,521...12,312,927
Ensembl chrNW_004936477:12,279,541...12,313,007 		JBrowse link
G Fbxo11 F-box protein 11 ISO RGD PMID:32988261 RGD:152176655 NCBI chrNW_004936508:4,622,695...4,708,694
Ensembl chrNW_004936508:4,685,595...4,708,694 		JBrowse link
G Foxo1 forkhead box O1 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chrNW_004936565:5,210,014...5,299,213
Ensembl chrNW_004936565:5,210,014...5,302,436 		JBrowse link
G Gga1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22836275) Ensembl
MGI		 PMID:22836275 GO_REF:0000107 NCBI chrNW_004936492:3,445,271...3,464,960
Ensembl chrNW_004936492:3,445,094...3,464,809 		JBrowse link
G Gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22836275) MGI
Ensembl		 PMID:22836275 GO_REF:0000107 NCBI chrNW_004936594:531,844...548,487
Ensembl chrNW_004936594:532,342...548,440 		JBrowse link
G Gja1 gap junction protein alpha 1 ISO RGD PMID:12952975 RGD:1582696 NCBI chrNW_004936658:3,920,043...3,932,987
Ensembl chrNW_004936658:3,920,043...3,932,987 		JBrowse link
G Gpc3 glypican 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18477453) Ensembl
MGI		 PMID:18477453 GO_REF:0000107 NCBI chrNW_004936691:1,060,013...1,459,736
Ensembl chrNW_004936691:1,059,994...1,459,740 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO RGD PMID:17686886 RGD:10045647 NCBI chrNW_004936536:6,730,070...6,893,818
Ensembl chrNW_004936536:6,730,062...6,894,303 		JBrowse link
G Hamp hepcidin antimicrobial peptide involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21700773) Ensembl
MGI		 PMID:21700773 GO_REF:0000107 NCBI chrNW_004936570:1,009,344...1,010,654
Ensembl chrNW_004936570:1,009,312...1,010,686 		JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936835:316,767...321,999
Ensembl chrNW_004936835:316,767...321,990 		JBrowse link
G Ier3 immediate early response 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19096392) MGI
Ensembl		 PMID:19096392 GO_REF:0000107 NCBI chrNW_004936837:401,475...402,769
Ensembl chrNW_004936837:401,524...402,741 		JBrowse link
G Itch itchy E3 ubiquitin protein ligase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:14973438) MGI
Ensembl		 PMID:14973438 GO_REF:0000107 NCBI chrNW_004936561:6,140,236...6,265,734
Ensembl chrNW_004936561:6,140,234...6,265,767 		JBrowse link
G LOC101973539 C4b-binding protein alpha chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:5,511,372...5,535,158
Ensembl chrNW_004936557:5,511,320...5,542,713 		JBrowse link
G LOC101977665 tumor necrosis factor ligand superfamily member 12 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17389268) MGI
Ensembl		 PMID:17389268 GO_REF:0000107 NCBI chrNW_004936595:831,252...839,783
Ensembl chrNW_004936595:830,466...839,748 		JBrowse link
G Lpcat1 lysophosphatidylcholine acyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20018880) Ensembl
MGI		 PMID:20018880 GO_REF:0000107 NCBI chrNW_004936815:281,664...345,915
Ensembl chrNW_004936815:292,200...344,413 		JBrowse link
G Mapk15 mitogen-activated protein kinase 15 ISO Human Estrogen Receptor alpha RGD PMID:12917323 RGD:2304230 NCBI chrNW_004936470:8,420,850...8,425,996
Ensembl chrNW_004936470:8,420,732...8,425,884 		JBrowse link
G Msn moesin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936635:2,390,390...2,461,870
Ensembl chrNW_004936635:2,389,823...2,461,930 		JBrowse link
G Mylip myosin regulatory light chain interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936552:2,325,161...2,341,356
Ensembl chrNW_004936552:2,325,378...2,339,867 		JBrowse link
G Ndfip1 Nedd4 family interacting protein 1 acts_upstream_of_or_within ISO (PMID:17137798) MGI PMID:17137798 NCBI chrNW_004936504:12,053,470...12,103,346 JBrowse link
G Ndufa13 NADH:ubiquinone oxidoreductase subunit A13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:1,946,058...1,953,734
Ensembl chrNW_004936596:1,946,111...1,953,698 		JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:14973438)
(PMID:11748237)		 MGI
Ensembl		 PMID:11748237 PMID:14973438 GO_REF:0000107 NCBI chrNW_004936471:17,254,777...17,374,725
Ensembl chrNW_004936471:17,252,234...17,374,804 		JBrowse link
G Nedd4l NEDD4 like E3 ubiquitin protein ligase ISO RGD PMID:18174164 RGD:6893331 NCBI chrNW_004936497:6,106,284...6,318,339
Ensembl chrNW_004936497:6,106,268...6,318,354 		JBrowse link
G Nkd1 NKD inhibitor of WNT signaling pathway 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:3,559,754...3,655,216
Ensembl chrNW_004936475:3,579,501...3,655,205 		JBrowse link
G Nsf N-ethylmaleimide sensitive factor, vesicle fusing ATPase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:1,989,092...2,137,006
Ensembl chrNW_004936541:1,987,326...2,137,067 		JBrowse link
G Oaz1 ornithine decarboxylase antizyme 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936588:1,356,769...1,361,037
Ensembl chrNW_004936588:1,356,769...1,361,037 		JBrowse link
G Oaz2 ornithine decarboxylase antizyme 2 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:25,069,035...25,081,640
Ensembl chrNW_004936471:25,070,127...25,081,431 		JBrowse link
G Oaz3 ornithine decarboxylase antizyme 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936580:1,963,372...1,966,086
Ensembl chrNW_004936580:1,963,415...1,965,950 		JBrowse link
G Plk2 polo like kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936480:9,680,461...9,686,593
Ensembl chrNW_004936480:9,680,449...9,686,595 		JBrowse link
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004936529:8,885,803...9,034,217
Ensembl chrNW_004936529:8,920,243...9,033,865 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:297,600...304,929
Ensembl chrNW_004936798:296,066...305,176 		JBrowse link
G Rbx1 ring-box 1 involved_in ISO (PMID:11027288), (PMID:16482215), (PMID:27626656) UniProt PMID:11027288 PMID:16482215 PMID:27626656 NCBI chrNW_004936492:872,316...890,860
Ensembl chrNW_004936492:873,576...890,835 		JBrowse link
G Rdx radixin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936612:3,992,542...4,060,598
Ensembl chrNW_004936612:3,992,542...4,040,315 		JBrowse link
G Rhbdd1 rhomboid domain containing 1 involved_in ISO (PMID:22624035)
(PMID:18953687)		 UniProt PMID:18953687 PMID:22624035 NCBI chrNW_004936525:8,906,848...9,028,792
Ensembl chrNW_004936525:8,906,631...9,004,372 		JBrowse link
G Rhbdd3 rhomboid domain containing 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23610400) Ensembl
MGI		 PMID:23610400 GO_REF:0000107 NCBI chrNW_004936657:3,290,684...3,296,352
Ensembl chrNW_004936657:3,290,574...3,296,705 		JBrowse link
G Rilp Rab interacting lysosomal protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:7,775,942...7,779,563
Ensembl chrNW_004936538:7,775,942...7,779,365 		JBrowse link
G Rnf41 ring finger protein 41 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:605,302...630,645
Ensembl chrNW_004936646:605,302...631,022 		JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936872:294,116...313,893
Ensembl chrNW_004936872:294,066...313,293 		JBrowse link
G Sgsm3 small G protein signaling modulator 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:1,380,322...1,416,060
Ensembl chrNW_004936492:1,385,347...1,416,124 		JBrowse link
G Snf8 SNF8 subunit of ESCRT-II involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:12,507,147...12,520,424
Ensembl chrNW_004936490:12,507,116...12,523,674 		JBrowse link
G Snx1 sorting nexin 1 ISO RGD PMID:11110793 RGD:68866 NCBI chrNW_004936471:24,569,677...24,617,016
Ensembl chrNW_004936471:24,569,609...24,619,826 		JBrowse link
G Sorl1 sortilin related receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:6,192,407...6,352,835
Ensembl chrNW_004936542:6,192,407...6,352,424 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:1,248,582...1,251,406
Ensembl chrNW_004936496:1,248,577...1,251,430 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19047045) Ensembl
MGI		 PMID:19047045 GO_REF:0000107 NCBI chrNW_004936655:1,849,044...1,852,648
Ensembl chrNW_004936655:1,847,272...1,852,705 		JBrowse link
G Stx5 syntaxin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:462,417...487,563
Ensembl chrNW_004936581:462,969...487,578 		JBrowse link
G Tiparp TCDD inducible poly(ADP-ribose) polymerase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23275542) MGI
Ensembl		 PMID:23275542 GO_REF:0000107 NCBI chrNW_004936519:3,683,972...3,712,081
Ensembl chrNW_004936519:3,684,515...3,712,081 		JBrowse link
G Tnf tumor necrosis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,936,066...1,937,766
Ensembl chrNW_004936727:1,936,066...1,937,766 		JBrowse link
G Tnfaip3 TNF alpha induced protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18952128) Ensembl
MGI		 PMID:18952128 GO_REF:0000107 NCBI chrNW_004936560:5,124,955...5,138,988
Ensembl chrNW_004936560:5,128,843...5,138,345 		JBrowse link
G Trim32 tripartite motif containing 32 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16243356) Ensembl
MGI		 PMID:16243356 GO_REF:0000107 NCBI chrNW_004936487:5,606,690...5,619,856
Ensembl chrNW_004936487:5,606,693...5,619,856 		JBrowse link
G Ubr3 ubiquitin protein ligase E3 component n-recognin 3 ISO RGD PMID:32988261 RGD:152176655 NCBI chrNW_004936509:325,277...537,423
Ensembl chrNW_004936509:324,953...535,141 		JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:7,969,271...7,978,537
Ensembl chrNW_004936493:7,971,960...7,985,314 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:3,085,959...3,102,461
Ensembl chrNW_004936524:3,085,500...3,102,466 		JBrowse link
G Vgll4 vestigial like family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936602:1,789,479...1,938,440
Ensembl chrNW_004936602:1,815,313...1,936,031 		JBrowse link
G Vip vasoactive intestinal peptide involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936489:5,425,778...5,434,483
Ensembl chrNW_004936489:5,425,726...5,434,785 		JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:21148287) UniProt PMID:21148287 NCBI chrNW_004936542:4,022,928...4,035,577
Ensembl chrNW_004936542:4,023,134...4,035,260 		JBrowse link
G Vps28 VPS28 subunit of ESCRT-I involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:7,829,207...7,833,213
Ensembl chrNW_004936470:7,830,114...7,833,047 		JBrowse link
G Vps35 VPS35 retromer complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:50,476...77,797
Ensembl chrNW_004936475:50,321...78,097 		JBrowse link
G Wnt5a Wnt family member 5A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12952940) Ensembl
MGI		 PMID:12952940 GO_REF:0000107 NCBI chrNW_004936473:6,031,627...6,052,211
Ensembl chrNW_004936473:6,029,976...6,052,159 		JBrowse link
positive regulation of protein catabolic process in the vacuole term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd81 CD81 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936794:664,089...670,294
Ensembl chrNW_004936794:664,115...669,800 		JBrowse link
positive regulation of proteolysis involved in protein catabolic process term browser