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ONTOLOGY REPORT - ANNOTATIONS

Term:protein catabolic process
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Accession:GO:0030163 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
Comment:This term refers to the breakdown of mature proteins. For cleavage events involved in generating a mature protein from a precursor, consider instead the term 'protein maturation ; GO:0051604' and its children.
Synonyms:exact_synonym: cellular protein breakdown;   cellular protein catabolic process;   cellular protein catabolism;   cellular protein degradation;   protein breakdown;   protein catabolism;   protein degradation
 narrow_synonym: multicellular organismal protein catabolic process
 related_synonym: pheromone catabolic process;   pheromone catabolism
 alt_id: GO:0044254;   GO:0044257
 xref: Wikipedia:Protein_catabolism

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show annotations for term's descendants           Sort by:
protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acr acrosin ISO RGD PMID:28859281 RGD:13464336 NCBI chrNW_004624752:42,847...49,438 JBrowse link
G Adamts13 ADAM metallopeptidase with thrombospondin type 1 motif 13 ISO RGD PMID:19652891 RGD:2315953 NCBI chrNW_004624760:1,865,474...1,889,394
Ensembl chrNW_004624760:1,865,376...1,889,203 		JBrowse link
G Afg3l2 AFG3 like matrix AAA peptidase subunit 2 involved_in ISO (PMID:37917749), (PMID:38157846) UniProt PMID:37917749 PMID:38157846 NCBI chrNW_004624770:19,590,829...19,631,663
Ensembl chrNW_004624770:19,591,215...19,631,722 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 acts_upstream_of_or_within ISO (PMID:12145204) MGI PMID:12145204 NCBI chrNW_004624734:507,880...525,295
Ensembl chrNW_004624734:509,368...525,295 		JBrowse link
G Ambp alpha-1-microglobulin/bikunin precursor ISO RGD PMID:11307954 RGD:6904220 NCBI chrNW_004624760:21,047,576...21,064,698
Ensembl chrNW_004624760:21,047,303...21,068,076 		JBrowse link
G Ankrd11 ankyrin repeat domain containing 11 acts_upstream_of_or_within ISO (PMID:25413698) MGI PMID:25413698 NCBI chrNW_004624746:378,123...576,809
Ensembl chrNW_004624746:461,933...577,050 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of ISO (PMID:16478791) MGI PMID:16478791 NCBI chrNW_004624743:30,517,034...30,635,740
Ensembl chrNW_004624743:30,546,323...30,635,737 		JBrowse link
G Ark2c arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C acts_upstream_of_or_within ISO (PMID:23610558) MGI PMID:23610558 NCBI chrNW_004624778:9,982,923...10,089,204
Ensembl chrNW_004624778:9,982,936...10,086,937 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO (PMID:15866887) MGI PMID:15866887 NCBI chrNW_004624943:231,978...480,933
Ensembl chrNW_004624943:232,618...481,290 		JBrowse link
G Axin1 axin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12717450) Ensembl
MGI		 PMID:12717450 GO_REF:0000107 NCBI chrNW_004624913:1,139,165...1,195,477
Ensembl chrNW_004624913:1,139,165...1,195,230 		JBrowse link
G Bcas2 BCAS2 pre-mRNA processing factor acts_upstream_of_or_within ISO (PMID:34972250) MGI PMID:34972250 NCBI chrNW_004624772:10,210,505...10,224,705
Ensembl chrNW_004624772:10,214,000...10,224,712 		JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (PMID:12843402) MGI PMID:12843402 NCBI chrNW_004624831:868,417...1,065,591
Ensembl chrNW_004624831:868,563...1,060,248 		JBrowse link
G Capn1 calpain 1 ISO RGD PMID:11893336 PMID:17429681 RGD:1626249 RGD:70442 NCBI chrNW_004624767:21,146,310...21,169,593
Ensembl chrNW_004624767:21,146,999...21,169,957 		JBrowse link
G Capn10 calpain 10 ISO RGD PMID:16790502 RGD:1625051 NCBI chrNW_004624847:4,911,052...4,922,549
Ensembl chrNW_004624847:4,911,737...4,922,192 		JBrowse link
G Capn3 calpain 3 involved_in ISO (PMID:27657329)
(PMID:23357851)		 UniProt PMID:23357851 PMID:27657329 NCBI chrNW_004624804:9,473,075...9,512,643
Ensembl chrNW_004624804:9,473,117...9,512,353 		JBrowse link
G Capns1 calpain small subunit 1 ISO RGD PMID:7982961 RGD:634695 NCBI chrNW_004624794:10,382,157...10,390,768 JBrowse link
G Casp7 caspase 7 involved_in ISO (PMID:16374543), (PMID:22184066), (PMID:22464733) RGD
UniProt		 PMID:16374543 PMID:18316105 PMID:22184066 PMID:22464733 RGD:2311460 NCBI chrNW_004624737:32,853,354...32,888,881
Ensembl chrNW_004624737:32,852,835...32,887,069 		JBrowse link
G Cast calpastatin acts_upstream_of_or_within ISO (PMID:11673859) MGI PMID:11673859 NCBI chrNW_004624743:15,265,930...15,405,904
Ensembl chrNW_004624743:15,346,837...15,403,150 		JBrowse link
G Cblb Cbl proto-oncogene B acts_upstream_of ISO (PMID:14973438) MGI PMID:14973438 NCBI chrNW_004624731:43,803,743...44,018,682
Ensembl chrNW_004624731:43,803,768...44,015,870 		JBrowse link
G Cblc Cbl proto-oncogene C acts_upstream_of_or_within ISO (PMID:18753381) MGI PMID:18753381 NCBI chrNW_004624907:1,676,296...1,690,479
Ensembl chrNW_004624907:1,676,021...1,691,137 		JBrowse link
G Cd2ap CD2 associated protein acts_upstream_of_or_within ISO (PMID:14512504)
(PMID:18753381)		 MGI PMID:14512504 PMID:18753381 NCBI chrNW_004624754:13,420,594...13,511,672
Ensembl chrNW_004624754:13,420,603...13,511,523 		JBrowse link
G Chek2 checkpoint kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:5,035,045...5,072,555
Ensembl chrNW_004624747:5,035,200...5,070,332 		JBrowse link
G Cln8 CLN8 transmembrane ER and ERGIC protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8389815) Ensembl
MGI		 PMID:8389815 GO_REF:0000107 NCBI chrNW_004624861:960,643...977,292
Ensembl chrNW_004624861:968,219...977,467 		JBrowse link
G Cma1 chymase 1 ISO RGD PMID:12900423 RGD:5128475 NCBI chrNW_004624820:8,021,965...8,024,763
Ensembl chrNW_004624820:8,021,959...8,024,851 		JBrowse link
G Cpb2 carboxypeptidase B2 ISO RGD PMID:11021404 RGD:625371 NCBI chrNW_004624748:8,850,128...8,927,986
Ensembl chrNW_004624748:8,849,900...8,928,853 		JBrowse link
G Cpn1 carboxypeptidase N subunit 1 ISO RGD PMID:11021404 RGD:625371 NCBI chrNW_004624737:11,851,502...11,880,815
Ensembl chrNW_004624737:11,848,921...11,880,961 		JBrowse link
G Ctsb cathepsin B ISO RGD PMID:8702598 PMID:8717430 PMID:11687729 PMID:11788364 RGD:1600623 RGD:1625498 RGD:1625507 RGD:631244 NCBI chrNW_004624758:25,366,120...25,384,554
Ensembl chrNW_004624758:25,366,840...25,373,954 		JBrowse link
G Ctsd cathepsin D ISO RGD PMID:12666874 RGD:1299317 NCBI chrNW_004624767:14,661,058...14,671,116
Ensembl chrNW_004624767:14,660,936...14,671,671 		JBrowse link
G Cul2 cullin 2 acts_upstream_of_or_within ISO (PMID:15601820) MGI PMID:15601820 NCBI chrNW_004624805:6,992,546...7,094,855 JBrowse link
G Cul3 cullin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:767,347...854,065
Ensembl chrNW_004624823:766,780...852,727 		JBrowse link
G Dab2ip DAB2 interacting protein involved_in ISO (PMID:17389591) UniProt PMID:17389591 NCBI chrNW_004624760:13,472,500...13,658,070
Ensembl chrNW_004624760:13,472,672...13,657,930 		JBrowse link
G Dennd3 DENN domain containing 3 involved_in ISO (PMID:21718402) UniProt PMID:21718402 NCBI chrNW_004624735:15,158,892...15,224,895
Ensembl chrNW_004624735:15,160,024...15,224,123 		JBrowse link
G Dpp3 dipeptidyl peptidase 3 ISO RGD PMID:10387075 RGD:728455 NCBI chrNW_004624767:19,894,386...19,916,996
Ensembl chrNW_004624767:19,894,279...19,916,987 		JBrowse link
G Dpp4 dipeptidyl peptidase 4 ISO RGD PMID:17415460 RGD:1626457 NCBI chrNW_004624732:3,460,529...3,535,252
Ensembl chrNW_004624732:3,460,118...3,535,249 		JBrowse link
G Dpp7 dipeptidyl peptidase 7 ISO RGD PMID:11173530 RGD:70800 NCBI chrNW_004624760:825,992...829,670
Ensembl chrNW_004624760:826,218...830,636 		JBrowse link
G Dysf dysferlin acts_upstream_of ISO (PMID:20724702) MGI PMID:20724702 NCBI chrNW_004624762:1,936,775...2,166,817
Ensembl chrNW_004624762:1,936,775...2,166,825 		JBrowse link
G Epg5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within ISO (PMID:31628468) MGI PMID:31628468 NCBI chrNW_004624778:9,490,744...9,614,289
Ensembl chrNW_004624778:9,491,258...9,614,299 		JBrowse link
G Erap1 endoplasmic reticulum aminopeptidase 1 ISO RGD PMID:10824104 RGD:1299521 NCBI chrNW_004624743:15,407,217...15,442,610
Ensembl chrNW_004624743:15,408,485...15,431,967 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:22556407) MGI PMID:22556407 NCBI chrNW_004624763:16,126,582...16,393,476
Ensembl chrNW_004624763:16,126,938...16,392,804 		JBrowse link
G Fbxl5 F-box and leucine rich repeat protein 5 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:21907140) Ensembl
MGI		 PMID:21907140 GO_REF:0000107 NCBI chrNW_004624755:16,197,223...16,245,108
Ensembl chrNW_004624755:16,197,242...16,245,653 		JBrowse link
G Fbxo24 F-box protein 24 acts_upstream_of_or_within ISO (PMID:38470475) MGI PMID:38470475 NCBI chrNW_004624740:16,481,882...16,489,323
Ensembl chrNW_004624740:16,481,891...16,490,088 		JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase acts_upstream_of ISO (PMID:16841086) MGI PMID:16841086 NCBI chrNW_004624933:248,298...456,933
Ensembl chrNW_004624933:389,627...456,520 		JBrowse link
G Gga1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 acts_upstream_of ISO (PMID:22836275) MGI PMID:22836275 NCBI chrNW_004624752:10,267,501...10,289,093
Ensembl chrNW_004624752:10,270,241...10,289,129 		JBrowse link
G Gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 acts_upstream_of ISO (PMID:22836275) MGI PMID:22836275 NCBI chrNW_004624801:5,057,611...5,073,276
Ensembl chrNW_004624801:5,059,126...5,073,157 		JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A acts_upstream_of ISO (PMID:15317856) MGI PMID:15317856 NCBI chrNW_004624824:7,128,169...7,513,360
Ensembl chrNW_004624824:7,137,909...7,507,910 		JBrowse link
G Hamp hepcidin antimicrobial peptide acts_upstream_of ISO (PMID:21700773) MGI PMID:21700773 NCBI chrNW_004624794:8,257,760...8,259,243
Ensembl chrNW_004624794:8,257,760...8,259,264 		JBrowse link
G Htra2 HtrA serine peptidase 2 involved_in ISO (PMID:17297443) ParkinsonsUK-UCL PMID:17297443 NCBI chrNW_004624749:28,980,375...28,983,719
Ensembl chrNW_004624749:28,980,362...28,983,869 		JBrowse link
G Ide insulin degrading enzyme involved_in ISO (PMID:20364150)
(PMID:20876579)
degradation of oxidized proteins in liver peroxisomes		 UniProt
ARUK-UCL
RGD		 PMID:11235899 PMID:20364150 PMID:20876579 RGD:1627575 NCBI chrNW_004624737:3,708,309...3,822,390
Ensembl chrNW_004624737:3,702,985...3,835,776 		JBrowse link
G Il17ra interleukin 17 receptor A involved_in ISO (PMID:28561022) MGI PMID:28561022 NCBI chrNW_004624735:10,139,787...10,164,074
Ensembl chrNW_004624735:10,138,418...10,164,198 		JBrowse link
G Itch itchy E3 ubiquitin protein ligase acts_upstream_of ISO (PMID:14973438) MGI PMID:14973438 NCBI chrNW_004624842:4,840,848...4,977,785
Ensembl chrNW_004624842:4,842,419...4,935,699 		JBrowse link
G Klhl3 kelch like family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:9,299,217...9,413,390
Ensembl chrNW_004624733:9,299,229...9,413,469 		JBrowse link
G Klk4 kallikrein related peptidase 4 acts_upstream_of_or_within ISO (PMID:22243248) MGI PMID:22243248 NCBI chrNW_004624832:3,828,676...3,832,025
Ensembl chrNW_004624832:3,828,679...3,831,767 		JBrowse link
G Lamp2 lysosomal associated membrane protein 2 involved_in ISO (PMID:36586411) UniProt PMID:36586411 NCBI chrNW_004624931:297,864...343,314
Ensembl chrNW_004624931:298,328...343,915 		JBrowse link
G Lnpep leucyl and cystinyl aminopeptidase acts_upstream_of_or_within ISO (PMID:11884418) MGI PMID:11884418 NCBI chrNW_004624743:15,606,873...15,696,593
Ensembl chrNW_004624743:15,606,836...15,705,832 		JBrowse link
G Lonp1 lon peptidase 1, mitochondrial involved_in ISO
IEA		 RGD
InterPro		 PMID:12752449 GO_REF:0000002 RGD:1580665 NCBI chrNW_004624828:4,494,786...4,516,772
Ensembl chrNW_004624828:4,494,813...4,516,510 		JBrowse link
G Lonp2 lon peptidase 2, peroxisomal involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624914:2,041,353...2,155,669
Ensembl chrNW_004624914:2,041,213...2,155,669 		JBrowse link
G Lpcat1 lysophosphatidylcholine acyltransferase 1 acts_upstream_of ISO (PMID:20018880) MGI PMID:20018880 NCBI chrNW_004624751:732,364...764,421
Ensembl chrNW_004624751:730,472...764,430 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:7,997,803...8,044,758
Ensembl chrNW_004624760:7,998,107...8,032,972 		JBrowse link
G Mme membrane metalloendopeptidase ISO RGD PMID:15308303 PMID:15908023 RGD:1581744 RGD:1600807 NCBI chrNW_004624730:32,601,835...32,691,368
Ensembl chrNW_004624730:32,601,488...32,689,080 		JBrowse link
G Mmp13 matrix metallopeptidase 13 ISO RGD PMID:17941091 RGD:2296055 NCBI chrNW_004624918:2,228,688...2,239,852 JBrowse link
G Mmp14 matrix metallopeptidase 14 involved_in ISO (PMID:35177851) UniProt PMID:35177851 NCBI chrNW_004624820:9,667,371...9,677,488
Ensembl chrNW_004624820:9,667,262...9,677,774 		JBrowse link
G Mmp2 matrix metallopeptidase 2 ISO RGD PMID:16899336 RGD:1601417 NCBI chrNW_004624757:1,450,680...1,479,160
Ensembl chrNW_004624757:1,448,698...1,479,255 		JBrowse link
G Mmp20 matrix metallopeptidase 20 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22243248) Ensembl
MGI		 PMID:22243248 GO_REF:0000107 NCBI chrNW_004624878:277,569...320,093
Ensembl chrNW_004624878:277,558...320,093 		JBrowse link
G Mmp3 matrix metallopeptidase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624878:39,282...47,386
Ensembl chrNW_004624878:39,358...47,075 		JBrowse link
G Mmp8 matrix metallopeptidase 8 ISO RGD PMID:16153442 RGD:2298554 NCBI chrNW_004624878:124,396...174,584
Ensembl chrNW_004624878:164,171...175,654 		JBrowse link
G Mmp9 matrix metallopeptidase 9 ISO RGD PMID:11788364 PMID:16303975 RGD:1580555 RGD:631244 NCBI chrNW_004624790:8,584,399...8,591,763
Ensembl chrNW_004624790:8,583,457...8,591,713 		JBrowse link
G Ndfip1 Nedd4 family interacting protein 1 acts_upstream_of ISO (PMID:17137798) MGI PMID:17137798 NCBI chrNW_004624774:1,245,587...1,353,253
Ensembl chrNW_004624774:1,303,773...1,353,253 		JBrowse link
G Nln neurolysin ISO RGD PMID:7836437 RGD:9831155 NCBI chrNW_004624815:4,020,212...4,162,233
Ensembl chrNW_004624815:4,017,514...4,162,237 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO (PMID:28561022) MGI PMID:28561022 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531 		JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 involved_in ISO (PMID:29934320) MGI PMID:29934320 NCBI chrNW_004624746:16,684,620...16,698,194
Ensembl chrNW_004624746:16,684,407...16,697,479 		JBrowse link
G Nrg1 neuregulin 1 acts_upstream_of ISO (PMID:20448149) MGI PMID:20448149 NCBI chrNW_004624780:11,297,306...11,525,236
Ensembl chrNW_004624780:11,301,182...12,424,066 		JBrowse link
G P2rx7 purinergic receptor P2X 7 acts_upstream_of_or_within ISO (PMID:11489964) MGI PMID:11489964 NCBI chrNW_004624747:21,725,813...21,768,123
Ensembl chrNW_004624747:21,725,395...21,759,453 		JBrowse link
G Pappa pappalysin 1 ISO RGD PMID:15754336 RGD:1642332 NCBI chrNW_004624760:18,842,353...19,078,657
Ensembl chrNW_004624760:18,848,021...19,078,657 		JBrowse link
G Pdlim2 PDZ and LIM domain 2 involved_in ISO (PMID:29934320) MGI PMID:29934320 NCBI chrNW_004624758:18,085,818...18,098,621 JBrowse link
G Pgpep1 pyroglutamyl-peptidase I ISO RGD PMID:14600395 RGD:1303965 NCBI chrNW_004624908:1,610,325...1,623,189
Ensembl chrNW_004624908:1,610,335...1,622,955 		JBrowse link
G Pja1 praja ring finger ubiquitin ligase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11959851) Ensembl
MGI		 PMID:11959851 GO_REF:0000107 NCBI chrNW_004624891:1,082,774...1,087,338
Ensembl chrNW_004624891:1,085,068...1,086,903 		JBrowse link
G Ppt1 palmitoyl-protein thioesterase 1 acts_upstream_of_or_within ISO (PMID:16368712) MGI PMID:16368712 NCBI chrNW_004624764:22,542,892...22,577,077
Ensembl chrNW_004624764:22,543,857...22,577,121 		JBrowse link
G Prep prolyl endopeptidase ISO RGD PMID:11792464 PMID:17415460 RGD:1626457 RGD:633649 NCBI chrNW_004624952:504,943...620,968
Ensembl chrNW_004624952:502,274...620,943 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:21376232) ParkinsonsUK-UCL PMID:21376232 NCBI chrNW_004624855:430,148...1,992,121
Ensembl chrNW_004624855:430,260...1,989,747 		JBrowse link
G Proc protein C, inactivator of coagulation factors Va and VIIIa ISO RGD PMID:1440533 RGD:11100042 NCBI chrNW_004624732:13,915,361...13,922,182
Ensembl chrNW_004624732:13,915,402...13,923,593 		JBrowse link
G Rab12 RAB12, member RAS oncogene family involved_in ISO (PMID:21718402) UniProt PMID:21718402 NCBI chrNW_004624770:17,636,031...17,654,863
Ensembl chrNW_004624770:17,635,901...17,653,919 		JBrowse link
G Rbx1 ring-box 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15601820) Ensembl
MGI		 PMID:15601820 GO_REF:0000107 NCBI chrNW_004624752:7,547,702...7,560,605
Ensembl chrNW_004624752:7,546,959...7,560,668 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in
acts_upstream_of		 IEA
ISO		 (PMID:15923614) Ensembl
MGI		 PMID:15923614 GO_REF:0000107 NCBI chrNW_004624767:20,732,813...20,742,016
Ensembl chrNW_004624767:20,732,938...20,741,272 		JBrowse link
G Ripk1 receptor interacting serine/threonine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624756:21,806,570...21,837,351
Ensembl chrNW_004624756:21,805,599...21,830,699 		JBrowse link
G Rnf170 ring finger protein 170 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:31076723) MGI
Ensembl		 PMID:31076723 GO_REF:0000107 NCBI chrNW_004624780:67,160...127,620
Ensembl chrNW_004624780:66,049...126,383 		JBrowse link
G Rnf5 ring finger protein 5 involved_in ISO (PMID:19285439) UniProt PMID:19285439 NCBI chrNW_004624754:24,141,072...24,143,460
Ensembl chrNW_004624754:24,141,072...24,143,489 		JBrowse link
G Serpine2 serpin family E member 2 acts_upstream_of ISO (PMID:15509762) MGI PMID:15509762 NCBI chrNW_004624823:1,261,458...1,326,261
Ensembl chrNW_004624823:1,261,406...1,326,917 		JBrowse link
G Siah1 siah E3 ubiquitin protein ligase 1 involved_in ISO (PMID:11389840) UniProt PMID:11389840 NCBI chrNW_004624914:2,166,958...2,193,357 JBrowse link
G Slc6a17 solute carrier family 6 member 17 involved_in ISO PMID:19147495 SynGO PMID:19147495 RGD:8554196 NCBI chrNW_004624772:5,910,899...5,958,855
Ensembl chrNW_004624772:5,910,897...5,958,845 		JBrowse link
G Slc6a7 solute carrier family 6 member 7 involved_in ISO (PMID:7651355)
PMID:6286882		 SynGO PMID:6286882 PMID:7651355 RGD:155230706 NCBI chrNW_004624774:9,499,697...9,519,522
Ensembl chrNW_004624774:9,499,450...9,519,583 		JBrowse link
G Slc6a8 solute carrier family 6 member 8 involved_in ISO PMID:20731764 SynGO PMID:20731764 RGD:13702397 NCBI chrNW_004624946:389,806...396,653 JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:37871017) MGI PMID:37871017 NCBI chrNW_004624804:11,569,024...11,672,037
Ensembl chrNW_004624804:11,569,150...11,670,373 		JBrowse link
G Spop speckle type BTB/POZ protein involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624795:5,698,131...5,769,209 JBrowse link
G Spopl speckle type BTB/POZ protein like involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624732:38,214,876...38,297,363
Ensembl chrNW_004624732:38,277,686...38,293,970 		JBrowse link
G Sqstm1 sequestosome 1 involved_in ISO (PMID:27498865), (PMID:30612879), (PMID:32715615), (PMID:36221902) UniProt PMID:27498865 PMID:30612879 PMID:32715615 PMID:36221902 NCBI chrNW_004624733:42,689,454...42,700,916
Ensembl chrNW_004624733:42,691,841...42,700,916 		JBrowse link
G St14 ST14 transmembrane serine protease matriptase ISO RGD PMID:11573963 RGD:634217 NCBI chrNW_004624812:4,584,043...4,620,410
Ensembl chrNW_004624812:4,583,946...4,620,547 		JBrowse link
G Syvn1 synoviolin 1 involved_in ISO (PMID:20160352) ParkinsonsUK-UCL PMID:20160352 NCBI chrNW_004624767:21,269,909...21,276,739
Ensembl chrNW_004624767:21,270,841...21,275,653 		JBrowse link
G Tpp1 tripeptidyl peptidase 1 ISO RGD PMID:10679303 RGD:1581099 NCBI chrNW_004624817:8,104,934...8,111,049
Ensembl chrNW_004624817:8,104,939...8,111,035 		JBrowse link
G Tpp2 tripeptidyl peptidase 2 ISO RGD PMID:12147224 RGD:634435 NCBI chrNW_004624793:8,782,956...8,848,547
Ensembl chrNW_004624793:8,779,967...8,848,539 		JBrowse link
G Traf2 TNF receptor associated factor 2 acts_upstream_of_or_within ISO (PMID:12958312) MGI PMID:12958312 NCBI chrNW_004624760:952,574...973,511
Ensembl chrNW_004624760:952,574...965,661 		JBrowse link
G Trim24 tripartite motif containing 24 involved_in ISO (PMID:19556538) UniProt PMID:19556538 NCBI chrNW_004624765:18,966,663...19,079,857 JBrowse link
G Ube4b ubiquitination factor E4B acts_upstream_of_or_within ISO (PMID:16314518) MGI PMID:16314518 NCBI chrNW_004624818:2,448,809...2,561,947
Ensembl chrNW_004624818:2,447,368...2,562,128 		JBrowse link
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 acts_upstream_of_or_within ISO (PMID:37871017) MGI PMID:37871017 NCBI chrNW_004624764:4,223,784...4,358,923
Ensembl chrNW_004624764:4,223,784...4,358,885 		JBrowse link
G Uchl3 ubiquitin C-terminal hydrolase L3 involved_in ISO (PMID:21762696) UniProt PMID:21762696 NCBI chrNW_004624751:24,882,580...24,940,301
Ensembl chrNW_004624751:24,882,705...24,940,105 		JBrowse link
G Utp25 UTP25 small subunit processome component involved_in ISO (PMID:23357851) UniProt PMID:23357851 NCBI chrNW_004624807:2,069,501...2,166,859
Ensembl chrNW_004624807:2,145,963...2,166,885 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (PMID:12832481) MGI PMID:12832481 NCBI chrNW_004624731:5,350,912...5,359,286 JBrowse link
acrosome matrix dispersal term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acr acrosin ISO RGD PMID:28859281 RGD:13464336 NCBI chrNW_004624752:42,847...49,438 JBrowse link
anaphase-promoting complex-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anapc1 anaphase promoting complex subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624749:458,670...570,799
Ensembl chrNW_004624749:460,699...569,545 		JBrowse link
G Anapc10 anaphase promoting complex subunit 10 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624853:3,992,351...4,059,254
Ensembl chrNW_004624853:3,992,414...4,059,215 		JBrowse link
G Anapc11 anaphase promoting complex subunit 11 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624801:10,738,356...10,742,334
Ensembl chrNW_004624801:10,738,224...10,742,220 		JBrowse link
G Anapc13 anaphase promoting complex subunit 13 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624730:10,805,200...10,811,341
Ensembl chrNW_004624730:10,805,250...10,810,853 		JBrowse link
G Anapc15 anaphase promoting complex subunit 15 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624817:4,863,426...4,866,452
Ensembl chrNW_004624817:4,864,670...4,866,452 		JBrowse link
G Anapc16 anaphase promoting complex subunit 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:6,009,255...6,031,023
Ensembl chrNW_004624754:6,009,151...6,023,908 		JBrowse link
G Anapc2 anaphase promoting complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:760,815...772,116
Ensembl chrNW_004624760:760,749...772,855 		JBrowse link
G Anapc4 anaphase promoting complex subunit 4 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624755:7,013,769...7,047,292
Ensembl chrNW_004624755:7,013,763...7,047,424 		JBrowse link
G Anapc5 anaphase promoting complex subunit 5 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624747:21,847,948...21,881,501
Ensembl chrNW_004624747:21,844,453...21,881,847 		JBrowse link
G Anapc7 anaphase promoting complex subunit 7 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624747:21,473,337...21,501,348
Ensembl chrNW_004624747:21,473,352...21,499,843 		JBrowse link
G Cdc16 cell division cycle 16 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624793:151,508...186,342 JBrowse link
G Cdc20 cell division cycle 20 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624892:2,675,980...2,679,709
Ensembl chrNW_004624892:2,675,754...2,679,793 		JBrowse link
G Cdc20b cell division cycle 20B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624759:4,112,012...4,174,838
Ensembl chrNW_004624759:4,109,203...4,176,824 		JBrowse link
G Cdc23 cell division cycle 23 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624743:31,012,262...31,036,639
Ensembl chrNW_004624743:31,012,720...31,036,762 		JBrowse link
G Cdc26 cell division cycle 26 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624760:21,820,513...21,830,808
Ensembl chrNW_004624760:21,820,531...21,830,784 		JBrowse link
G Cdc27 cell division cycle 27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624849:2,026,433...2,105,626
Ensembl chrNW_004624849:2,026,425...2,092,857 		JBrowse link
G Cul3 cullin 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10500095) MGI
Ensembl		 PMID:10500095 GO_REF:0000107 NCBI chrNW_004624823:767,347...854,065
Ensembl chrNW_004624823:766,780...852,727 		JBrowse link
G Ecrg4 ECRG4 augurin precursor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20404145) Ensembl
TreeGrafter
MGI		 PMID:20404145 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624749:9,947,366...9,956,876
Ensembl chrNW_004624749:9,947,188...9,956,983 		JBrowse link
G Fbxo31 F-box protein 31 involved_in ISO (PMID:19412162) UniProt PMID:19412162 NCBI chrNW_004624746:3,034,458...3,078,230
Ensembl chrNW_004624746:3,043,600...3,078,223 		JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:6,236,861...6,254,763
Ensembl chrNW_004624828:6,236,842...6,256,679 		JBrowse link
G LOC101725790 anaphase-promoting complex subunit 10 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624758:3,211,714...3,212,506 JBrowse link
G Ube2c ubiquitin conjugating enzyme E2 C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624790:8,756,758...8,760,078
Ensembl chrNW_004624790:8,751,662...8,760,057 		JBrowse link
G Ube2s ubiquitin conjugating enzyme E2 S involved_in ISO (PMID:19820702), (PMID:19822757) UniProt PMID:19820702 PMID:19822757 NCBI chrNW_004624832:1,913,948...1,918,750
Ensembl chrNW_004624832:1,913,636...1,918,848 		JBrowse link
CAT tailing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nemf nuclear export mediator factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624731:18,917,097...18,963,490
Ensembl chrNW_004624731:18,917,191...18,961,764 		JBrowse link
chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg5 autophagy related 5 involved_in ISO PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chrNW_004624780:15,987,483...16,124,158
Ensembl chrNW_004624780:15,987,397...16,124,151 		JBrowse link
G Atg7 autophagy related 7 involved_in ISO PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chrNW_004624943:231,978...480,933
Ensembl chrNW_004624943:232,618...481,290 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 acts_upstream_of_or_within
involved_in		 ISO PMID:18644871 MGI
ParkinsonsUK-UCL		 PMID:18644871 RGD:10412301 NCBI chrNW_004624880:2,070,410...2,075,069
Ensembl chrNW_004624880:2,070,523...2,079,421 		JBrowse link
G Lamp2 lysosomal associated membrane protein 2 involved_in
acts_upstream_of_or_within		 ISO PMID:11082038
(PMID:27628032)
(PMID:18644871)
(PMID:18579532)
(PMID:36586411)
(PMID:24880125), (PMID:27628032), (PMID:8662539)		 ParkinsonsUK-UCL
UniProt
MGI		 PMID:8662539 PMID:11082038 PMID:18579532 PMID:18644871 PMID:24880125 More... RGD:1581607 NCBI chrNW_004624931:297,864...343,314
Ensembl chrNW_004624931:298,328...343,915 		JBrowse link
G Synpo2 synaptopodin 2 involved_in ISO PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chrNW_004624867:5,697,192...5,895,957 JBrowse link
chondroitin sulfate proteoglycan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gusb glucuronidase beta involved_in ISO (PMID:23897660) MGI PMID:23897660 NCBI chrNW_004624740:8,390,096...8,401,063
Ensembl chrNW_004624740:8,390,197...8,401,387 		JBrowse link
G Hexb hexosaminidase subunit beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624924:195,406...219,232
Ensembl chrNW_004624924:195,175...219,278 		JBrowse link
G Hyal1 hyaluronidase 1 involved_in ISO (PMID:22451654) MGI PMID:22451654 NCBI chrNW_004624730:4,161,204...4,165,554
Ensembl chrNW_004624730:4,160,557...4,165,589 		JBrowse link
G Hyal4 hyaluronidase 4 acts_upstream_of_or_within ISO (PMID:23086929) MGI PMID:23086929 NCBI chrNW_004624783:12,120,665...12,133,027
Ensembl chrNW_004624783:12,120,665...12,133,027 		JBrowse link
cytoplasm protein quality control term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624764:4,223,784...4,358,923
Ensembl chrNW_004624764:4,223,784...4,358,885 		JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624763:19,414,582...19,530,539
Ensembl chrNW_004624763:19,414,549...19,530,517 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624915:253,240...270,440
Ensembl chrNW_004624915:253,240...270,501 		JBrowse link
cytoplasm protein quality control by the ubiquitin-proteasome system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf126 ring finger protein 126 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624828:7,856,822...7,865,644
Ensembl chrNW_004624828:7,856,470...7,869,926 		JBrowse link
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624764:4,223,784...4,358,923
Ensembl chrNW_004624764:4,223,784...4,358,885 		JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624763:19,414,582...19,530,539
Ensembl chrNW_004624763:19,414,549...19,530,517 		JBrowse link
dermatan sulfate proteoglycan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arsb arylsulfatase B involved_in ISO (PMID:24240681) MGI PMID:24240681 NCBI chrNW_004624869:3,226,633...3,476,071
Ensembl chrNW_004624869:3,289,430...3,476,437 		JBrowse link
G Hexa hexosaminidase subunit alpha involved_in ISO (PMID:11707436) MGI PMID:11707436 NCBI chrNW_004624781:1,686,818...1,706,044
Ensembl chrNW_004624781:1,686,384...1,714,684 		JBrowse link
G Hexb hexosaminidase subunit beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624924:195,406...219,232
Ensembl chrNW_004624924:195,175...219,278 		JBrowse link
G Ids iduronate 2-sulfatase involved_in ISO (PMID:30064964) MGI PMID:30064964 NCBI chrNW_004624883:2,031,208...2,056,379
Ensembl chrNW_004624883:2,030,783...2,055,519 		JBrowse link
G Idua alpha-L-iduronidase involved_in
acts_upstream_of_or_within		 ISO (PMID:24036510)
(PMID:19751987)
(PMID:19834056)
(PMID:25854773)		 UniProt
MGI		 PMID:19751987 PMID:19834056 PMID:24036510 PMID:25854773 NCBI chrNW_004624755:26,151,302...26,169,324
Ensembl chrNW_004624755:26,154,186...26,169,365 		JBrowse link
elastin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cela1 chymotrypsin like elastase 1 acts_upstream_of_or_within ISO (PMID:24793170) MGI PMID:24793170 NCBI chrNW_004624816:906,103...939,252
Ensembl chrNW_004624816:906,121...939,696 		JBrowse link
G Mmp12 matrix metallopeptidase 12 involved_in ISO (PMID:29101312) ARUK-UCL PMID:29101312 NCBI chrNW_004624878:6,017...17,368
Ensembl chrNW_004624878:6,035...17,445 		JBrowse link
epidermal growth factor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:16282324)
(PMID:18272684)		 UniProt
BHF-UCL		 PMID:16282324 PMID:18272684 NCBI chrNW_004625042:56,509...112,519
Ensembl chrNW_004625042:56,517...112,612 		JBrowse link
G Snx5 sorting nexin 5 ISO RGD PMID:16487940 RGD:13508623 NCBI chrNW_004624741:18,954,066...18,974,616
Ensembl chrNW_004624741:18,953,202...18,974,545 		JBrowse link
ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amfr autocrine motility factor receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624757:136,289...179,743
Ensembl chrNW_004624757:136,283...179,138 		JBrowse link
G Ankzf1 ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624823:5,780,287...5,787,543
Ensembl chrNW_004624823:5,780,484...5,787,007 		JBrowse link
G Aup1 AUP1 lipid droplet regulating VLDL assembly factor involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624749:28,983,753...28,986,785
Ensembl chrNW_004624749:28,983,802...28,986,643 		JBrowse link
G Bag6 BAG cochaperone 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624754:24,559,483...24,571,073
Ensembl chrNW_004624754:24,559,801...24,571,073 		JBrowse link
G Brsk2 BR serine/threonine kinase 2 involved_in ISO (PMID:23907667) ParkinsonsUK-UCL PMID:23907667 NCBI chrNW_004624766:21,296,115...21,334,054
Ensembl chrNW_004624766:21,296,120...21,334,040 		JBrowse link
G Calr calreticulin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624901:511,295...515,208
Ensembl chrNW_004624901:511,052...516,757 		JBrowse link
G Calr3 calreticulin 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624908:949,709...962,114
Ensembl chrNW_004624908:949,783...961,667 		JBrowse link
G Canx calnexin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:42,588,680...42,616,624 JBrowse link
G Ccdc47 coiled-coil domain containing 47 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25009997) Ensembl
MGI		 PMID:25009997 GO_REF:0000107 NCBI chrNW_004624849:1,237,364...1,282,588
Ensembl chrNW_004624849:1,237,370...1,282,611 		JBrowse link
G Clgn calmegin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004625006:28,014...88,801
Ensembl chrNW_004625006:30,037...88,167 		JBrowse link
G Derl1 derlin 1 involved_in ISO (PMID:18555783), (PMID:24089527), (PMID:25239945)
(PMID:15215856), (PMID:17872946)		 ParkinsonsUK-UCL
UniProt		 PMID:15215856 PMID:17872946 PMID:18555783 PMID:24089527 PMID:25239945 NCBI chrNW_004624735:31,832,711...31,857,687
Ensembl chrNW_004624735:31,832,701...31,857,687 		JBrowse link
G Derl2 derlin 2 involved_in ISO (PMID:16449189) UniProt PMID:16449189 NCBI chrNW_004624786:9,274,302...9,285,645
Ensembl chrNW_004624786:9,274,302...9,285,288 		JBrowse link
G Derl3 derlin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:10,357,560...10,359,779
Ensembl chrNW_004624747:10,357,627...10,359,779 		JBrowse link
G Dnajb12 DnaJ heat shock protein family (Hsp40) member B12 involved_in ISO (PMID:21148293), (PMID:21150129) UniProt PMID:21148293 PMID:21150129 NCBI chrNW_004624754:6,131,180...6,149,597
Ensembl chrNW_004624754:6,131,271...6,149,522 		JBrowse link
G Dnajb2 DnaJ heat shock protein family (Hsp40) member B2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624823:5,730,553...5,737,668
Ensembl chrNW_004624823:5,730,386...5,738,459 		JBrowse link
G Dnajb9 DnaJ heat shock protein family (Hsp40) member B9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624739:21,187,581...21,193,345
Ensembl chrNW_004624739:21,187,581...21,193,337 		JBrowse link
G Dnajc10 DnaJ heat shock protein family (Hsp40) member C10 involved_in ISO (PMID:18400946)
(PMID:18653895), (PMID:21329881)		 UniProt PMID:18400946 PMID:18653895 PMID:21329881 NCBI chrNW_004624844:4,499,653...4,544,596
Ensembl chrNW_004624844:4,499,699...4,543,391 		JBrowse link
G Ecpas Ecm29 proteasome adaptor and scaffold involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624758:67,558...194,653
Ensembl chrNW_004624758:67,650...195,122 		JBrowse link
G Edem1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:21062743), (PMID:25092655)
(PMID:11375934)		 ParkinsonsUK-UCL
MGI		 PMID:11375934 PMID:21062743 PMID:25092655 NCBI chrNW_004624773:15,846,347...15,878,312
Ensembl chrNW_004624773:15,846,553...15,878,803 		JBrowse link
G Edem2 ER degradation enhancing alpha-mannosidase like protein 2 involved_in ISO (PMID:15537790), (PMID:25092655) ParkinsonsUK-UCL PMID:15537790 PMID:25092655 NCBI chrNW_004624842:4,259,551...4,288,181
Ensembl chrNW_004624842:4,259,605...4,292,518 		JBrowse link
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 involved_in ISO (PMID:25092655)
(PMID:16431915)		 ARUK-UCL
ParkinsonsUK-UCL		 PMID:16431915 PMID:25092655 NCBI chrNW_004624814:8,839,016...8,924,161
Ensembl chrNW_004624814:8,838,997...8,922,936 		JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 involved_in ISO (PMID:17707796) UniProt PMID:17707796 NCBI chrNW_004624749:15,867,444...15,950,757
Ensembl chrNW_004624749:15,869,569...15,950,757 		JBrowse link
G Erlec1 endoplasmic reticulum lectin 1 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004624833:7,964,815...7,992,277
Ensembl chrNW_004624833:7,964,810...7,992,582 		JBrowse link
G Erlin1 ER lipid raft associated 1 involved_in ISO (PMID:19240031) UniProt PMID:19240031 NCBI chrNW_004624737:11,977,397...12,018,437
Ensembl chrNW_004624737:11,977,397...12,018,438 		JBrowse link
G Erlin2 ER lipid raft associated 2 involved_in ISO (PMID:19240031) UniProt PMID:19240031 NCBI chrNW_004624780:5,844,473...5,861,493
Ensembl chrNW_004624780:5,843,141...5,862,039 		JBrowse link
G Faf1 Fas associated factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624859:2,105,840...2,628,074
Ensembl chrNW_004624859:2,105,884...2,630,090 		JBrowse link
G Faf2 Fas associated factor family member 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:13,608,993...13,674,200
Ensembl chrNW_004624733:13,608,360...13,674,175 		JBrowse link
G Fbxo17 F-box protein 17 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624794:12,275,383...12,303,527
Ensembl chrNW_004624794:12,285,164...12,303,508 		JBrowse link
G Fbxo2 F-box protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15723043) MGI
TreeGrafter		 PMID:15723043 GO_REF:0000118 NCBI chrNW_004624818:1,300,191...1,311,245
Ensembl chrNW_004624818:1,299,067...1,309,667 		JBrowse link
G Fbxo27 F-box protein 27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624794:12,370,117...12,375,180 JBrowse link
G Fbxo6 F-box protein 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624818:1,286,819...1,292,565
Ensembl chrNW_004624818:1,286,820...1,292,755 		JBrowse link
G Foxred2 FAD dependent oxidoreductase domain containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:11,216,852...11,238,031
Ensembl chrNW_004624752:11,216,856...11,234,729 		JBrowse link
G Get4 guided entry of tail-anchored proteins factor 4 involved_in ISO (PMID:21636303) ParkinsonsUK-UCL PMID:21636303 NCBI chrNW_004624740:26,465,497...26,479,332
Ensembl chrNW_004624740:26,465,483...26,479,337 		JBrowse link
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:29,069,995...29,081,085
Ensembl chrNW_004624746:29,068,350...29,081,085 		JBrowse link
G Hsp90b1 heat shock protein 90 beta family member 1 involved_in
NOT|involved_in		 ISO (PMID:18264092)
(PMID:24899641)		 UniProt PMID:18264092 PMID:24899641 NCBI chrNW_004624750:4,738,563...4,752,227
Ensembl chrNW_004624750:4,737,894...4,752,221 		JBrowse link
G Jkamp JNK1/MAPK8 associated membrane protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624734:41,610,973...41,625,736
Ensembl chrNW_004624734:41,610,985...41,625,707 		JBrowse link
G LOC101708651 calreticulin-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624859:1,523,187...1,553,612 JBrowse link
G LOC101722747 F-box only protein 44 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624818:1,293,009...1,299,708
Ensembl chrNW_004624818:1,293,374...1,300,121 		JBrowse link
G Man1a1 mannosidase alpha class 1A member 1 involved_in ISO (PMID:27108681) UniProt PMID:27108681 NCBI chrNW_004624798:10,986,465...11,117,182
Ensembl chrNW_004624798:10,986,519...11,117,650 		JBrowse link
G Man1b1 mannosidase alpha class 1B member 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:18003979), (PMID:21062743)
(PMID:15294975)		 ParkinsonsUK-UCL
MGI		 PMID:15294975 PMID:18003979 PMID:21062743 NCBI chrNW_004624760:813,657...826,020
Ensembl chrNW_004624760:813,045...825,153 		JBrowse link
G Marchf6 membrane associated ring-CH-type finger 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624751:7,715,065...7,781,320
Ensembl chrNW_004624751:7,715,007...7,780,460 		JBrowse link
G Nccrp1 NCCRP1, F-box associated domain containing involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624794:12,514,223...12,517,666
Ensembl chrNW_004624794:12,514,270...12,516,903 		JBrowse link
G Nploc4 NPL4 homolog, ubiquitin recognition factor involved_in ISO PMID:12847084
(PMID:12847084)		 ComplexPortal PMID:12847084 RGD:10047330 NCBI chrNW_004624801:10,531,107...10,589,502
Ensembl chrNW_004624801:10,533,064...10,589,096 		JBrowse link
G Os9 OS9 endoplasmic reticulum lectin involved_in IEA Ensembl
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004624802:10,221,633...10,252,008
Ensembl chrNW_004624802:10,222,259...10,252,039 		JBrowse link
G Rcn3 reticulocalbin 3 involved_in ISO (PMID:26252542) UniProt PMID:26252542 NCBI chrNW_004624832:4,699,294...4,709,188
Ensembl chrNW_004624832:4,699,299...4,709,150 		JBrowse link
G Rhbdd1 rhomboid domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624843:1,217,655...1,362,406
Ensembl chrNW_004624843:1,219,808...1,360,135 		JBrowse link
G Rnf103 ring finger protein 103 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624749:16,689,010...16,712,673
Ensembl chrNW_004624749:16,688,389...16,708,419 		JBrowse link
G Rnf121 ring finger protein 121 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624817:4,968,790...5,051,573
Ensembl chrNW_004624817:4,968,684...5,051,871 		JBrowse link
G Rnf139 ring finger protein 139 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624735:30,715,373...30,726,591
Ensembl chrNW_004624735:30,715,384...30,726,862 		JBrowse link
G Rnf145 ring finger protein 145 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:30,239,475...30,288,171
Ensembl chrNW_004624733:30,245,689...30,290,684 		JBrowse link
G Rnf175 ring finger protein 175 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624858:4,986,951...5,037,533
Ensembl chrNW_004624858:4,987,093...5,037,244 		JBrowse link
G Rnf185 ring finger protein 185 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:7,642,198...7,693,944
Ensembl chrNW_004624747:7,641,916...7,694,033 		JBrowse link
G Rnf5 ring finger protein 5 involved_in ISO (PMID:19269966), (PMID:24019521) UniProt PMID:19269966 PMID:24019521 NCBI chrNW_004624754:24,141,072...24,143,460
Ensembl chrNW_004624754:24,141,072...24,143,489 		JBrowse link
G Sdf2l1 stromal cell derived factor 2 like 1 acts_upstream_of_or_within ISO PMID:23444373 MGI PMID:23444373 RGD:8554667 NCBI chrNW_004624747:1,195,043...1,197,105
Ensembl chrNW_004624747:1,195,055...1,197,105 		JBrowse link
G Sec61b SEC61 translocon subunit beta involved_in ISO (PMID:8945469) UniProt PMID:8945469 NCBI chrNW_004624825:1,762,735...1,771,271
Ensembl chrNW_004624825:1,762,734...1,771,233 		JBrowse link
G Sel1l SEL1L adaptor subunit of SYVN1 ubiquitin ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624734:20,532,676...20,596,847
Ensembl chrNW_004624734:20,532,235...20,595,784 		JBrowse link
G Sel1l2 SEL1L2 adaptor subunit of SYVN1 ubiquitin ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624741:14,858,962...14,986,830
Ensembl chrNW_004624741:14,859,905...14,986,152 		JBrowse link
G Selenos selenoprotein S involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624768:3,539,369...3,550,716
Ensembl chrNW_004624768:3,539,465...3,550,211 		JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISO (PMID:23129660) UniProt PMID:23129660 NCBI chrNW_004624828:5,832,274...5,854,472
Ensembl chrNW_004624828:5,834,586...5,843,528 		JBrowse link
G Stt3b STT3 oligosaccharyltransferase complex catalytic subunit B involved_in ISO (PMID:22607976) UniProt PMID:22607976 NCBI chrNW_004624788:9,614,932...9,726,773
Ensembl chrNW_004624788:9,615,658...9,725,240 		JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in ISO (PMID:23990462) ParkinsonsUK-UCL PMID:23990462 NCBI chrNW_004624913:1,491,873...1,494,249
Ensembl chrNW_004624913:1,491,991...1,494,249 		JBrowse link
G Syvn1 synoviolin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21245296) MGI
TreeGrafter		 PMID:21245296 GO_REF:0000118 NCBI chrNW_004624767:21,269,909...21,276,739
Ensembl chrNW_004624767:21,270,841...21,275,653 		JBrowse link
G Tmem129 transmembrane protein 129, E3 ubiquitin ligase involved_in ISO (PMID:24807418) ParkinsonsUK-UCL PMID:24807418 NCBI chrNW_004624755:25,694,391...25,699,294
Ensembl chrNW_004624755:25,694,026...25,699,489 		JBrowse link
G Tmem67 transmembrane protein 67 involved_in ISO (PMID:19815549) UniProt PMID:19815549 NCBI chrNW_004624763:1,219,779...1,281,297
Ensembl chrNW_004624763:1,219,827...1,264,071 		JBrowse link
G Tmub1 transmembrane and ubiquitin like domain containing 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624800:5,538,328...5,541,024
Ensembl chrNW_004624800:5,538,279...5,541,024 		JBrowse link
G Tmub2 transmembrane and ubiquitin like domain containing 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624795:792,835...796,472
Ensembl chrNW_004624795:791,733...794,843 		JBrowse link
G Tor1a torsin family 1 member A involved_in ISO (PMID:17200151) UniProt PMID:17200151 NCBI chrNW_004624760:5,602,011...5,606,784
Ensembl chrNW_004624760:5,601,943...5,606,162 		JBrowse link
G Trim13 tripartite motif containing 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624748:4,683,518...4,765,944 JBrowse link
G Trim25 tripartite motif containing 25 involved_in ISO (PMID:24810856) ParkinsonsUK-UCL PMID:24810856 NCBI chrNW_004624795:11,967,908...11,986,707
Ensembl chrNW_004624795:11,971,610...11,986,608 		JBrowse link
G Ube2g2 ubiquitin conjugating enzyme E2 G2 involved_in
acts_upstream_of_or_within		 ISO (PMID:22607976)
(PMID:11278356)		 UniProt
MGI		 PMID:11278356 PMID:22607976 NCBI chrNW_004624745:30,353,530...30,382,780
Ensembl chrNW_004624745:30,353,369...30,382,782 		JBrowse link
G Ube2j1 ubiquitin conjugating enzyme E2 J1 involved_in
acts_upstream_of_or_within		 ISO (PMID:22607976)
(PMID:24020373)
(PMID:21245296)		 UniProt
MGI		 PMID:21245296 PMID:22607976 PMID:24020373 NCBI chrNW_004624799:4,811,686...4,838,708
Ensembl chrNW_004624799:4,811,649...4,841,511 		JBrowse link
G Ube2j2 ubiquitin conjugating enzyme E2 J2 involved_in ISO (PMID:24807418) ParkinsonsUK-UCL PMID:24807418 NCBI chrNW_004624818:8,326,592...8,347,108
Ensembl chrNW_004624818:8,326,781...8,347,370 		JBrowse link
G Ube4a ubiquitination factor E4A involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624784:13,754,234...13,792,616 JBrowse link
G Ube4b ubiquitination factor E4B involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624818:2,448,809...2,561,947
Ensembl chrNW_004624818:2,447,368...2,562,128 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624809:6,434,842...6,487,442
Ensembl chrNW_004624809:6,436,658...6,487,251 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624910:1,547,942...1,551,323
Ensembl chrNW_004624910:1,548,249...1,550,126 		JBrowse link
G Ubxn4 UBX domain protein 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624732:35,055,726...35,113,016
Ensembl chrNW_004624732:35,056,022...35,110,987 		JBrowse link
G Ubxn6 UBX domain protein 6 involved_in ISO (PMID:19275885) UniProt PMID:19275885 NCBI chrNW_004624828:5,257,960...5,265,371
Ensembl chrNW_004624828:5,258,023...5,264,989 		JBrowse link
G Ubxn8 UBX domain protein 8 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624780:13,378,206...13,409,745 JBrowse link
G Ufd1 ubiquitin recognition factor in ER associated degradation 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:110,090...132,145
Ensembl chrNW_004624747:110,090...132,097 		JBrowse link
G Uggt1 UDP-glucose glycoprotein glucosyltransferase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624732:17,274,731...17,379,634
Ensembl chrNW_004624732:17,279,254...17,415,628 		JBrowse link
G Uggt2 UDP-glucose glycoprotein glucosyltransferase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624879:2,449,128...2,642,884
Ensembl chrNW_004624879:2,450,316...2,642,954 		JBrowse link
G Umod uromodulin acts_upstream_of_or_within ISO (PMID:28437467) MGI PMID:28437467 NCBI chrNW_004624782:3,639,955...3,654,026
Ensembl chrNW_004624782:3,640,214...3,652,324 		JBrowse link
G Usp19 ubiquitin specific peptidase 19 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:3,134,419...3,145,512
Ensembl chrNW_004624730:3,133,595...3,146,221 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624915:253,240...270,440
Ensembl chrNW_004624915:253,240...270,501 		JBrowse link
G Wfs1 wolframin ER transmembrane glycoprotein involved_in ISO (PMID:20160352) ParkinsonsUK-UCL PMID:20160352 NCBI chrNW_004624755:22,818,653...22,841,717
Ensembl chrNW_004624755:22,824,143...22,841,850 		JBrowse link
G Yod1 YOD1 deubiquitinase involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624807:4,443,653...4,448,759
Ensembl chrNW_004624807:4,443,650...4,446,373 		JBrowse link
glycoprotein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 acts_upstream_of_or_within ISO (PMID:16431915) MGI PMID:16431915 NCBI chrNW_004624814:8,839,016...8,924,161
Ensembl chrNW_004624814:8,838,997...8,922,936 		JBrowse link
G Fbxo17 F-box protein 17 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624794:12,275,383...12,303,527
Ensembl chrNW_004624794:12,285,164...12,303,508 		JBrowse link
G Fbxo2 F-box protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15723043) MGI
TreeGrafter		 PMID:15723043 GO_REF:0000118 NCBI chrNW_004624818:1,300,191...1,311,245
Ensembl chrNW_004624818:1,299,067...1,309,667 		JBrowse link
G Fbxo27 F-box protein 27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624794:12,370,117...12,375,180 JBrowse link
G Fbxo6 F-box protein 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15723043) MGI
TreeGrafter		 PMID:15723043 GO_REF:0000118 NCBI chrNW_004624818:1,286,819...1,292,565
Ensembl chrNW_004624818:1,286,820...1,292,755 		JBrowse link
G Glb1 galactosidase beta 1 involved_in ISO (PMID:31720227) FlyBase PMID:31720227 NCBI chrNW_004624788:10,970,657...11,110,839
Ensembl chrNW_004624788:10,970,652...11,111,722 		JBrowse link
G LOC101722747 F-box only protein 44 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624818:1,293,009...1,299,708
Ensembl chrNW_004624818:1,293,374...1,300,121 		JBrowse link
G Manba mannosidase beta acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:3447593) MGI
TreeGrafter		 PMID:3447593 GO_REF:0000118 NCBI chrNW_004624830:5,254,545...5,329,627
Ensembl chrNW_004624830:5,254,495...5,330,611 		JBrowse link
G Nccrp1 NCCRP1, F-box associated domain containing involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624794:12,514,223...12,517,666
Ensembl chrNW_004624794:12,514,270...12,516,903 		JBrowse link
G Neu2 neuraminidase 2 involved_in ISO (PMID:14613940) UniProt PMID:14613940 NCBI chrNW_004624843:5,666,959...5,671,833
Ensembl chrNW_004624843:5,665,448...5,670,832 		JBrowse link
G Neu4 neuraminidase 4 involved_in ISO (PMID:19506080), (PMID:22393058)
(PMID:15213228), (PMID:15847605)		 UniProt PMID:15213228 PMID:15847605 PMID:19506080 PMID:22393058 NCBI chrNW_004624847:5,716,165...5,720,542
Ensembl chrNW_004624847:5,716,659...5,720,542 		JBrowse link
G Ngly1 N-glycanase 1 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624788:3,631,142...3,707,725
Ensembl chrNW_004624788:3,626,893...3,707,680 		JBrowse link
G Stt3b STT3 oligosaccharyltransferase complex catalytic subunit B involved_in ISO (PMID:22607976) UniProt PMID:22607976 NCBI chrNW_004624788:9,614,932...9,726,773
Ensembl chrNW_004624788:9,615,658...9,725,240 		JBrowse link
heparan sulfate proteoglycan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gns glucosamine (N-acetyl)-6-sulfatase involved_in ISO (PMID:15595925) FlyBase PMID:15595925 NCBI chrNW_004624802:3,637,250...3,668,698
Ensembl chrNW_004624802:3,636,906...3,666,033 		JBrowse link
G Gpc1 glypican 1 involved_in ISO (PMID:12732622) UniProt PMID:12732622 NCBI chrNW_004624847:4,832,610...4,853,849
Ensembl chrNW_004624847:4,832,488...4,853,851 		JBrowse link
G Gusb glucuronidase beta involved_in ISO (PMID:11273777), (PMID:23897660) MGI PMID:11273777 PMID:23897660 NCBI chrNW_004624740:8,390,096...8,401,063
Ensembl chrNW_004624740:8,390,197...8,401,387 		JBrowse link
G Hgsnat heparan-alpha-glucosaminide N-acetyltransferase involved_in ISO (PMID:16960811) MGI PMID:16960811 NCBI chrNW_004624992:86,403...153,100
Ensembl chrNW_004624992:101,546...153,599 		JBrowse link
G Hpse heparanase involved_in ISO (PMID:12213822)
(PMID:12460766)		 UniProt
MGI		 PMID:12213822 PMID:12460766 NCBI chrNW_004624900:296,626...335,624
Ensembl chrNW_004624900:296,676...335,570 		JBrowse link
G Ids iduronate 2-sulfatase involved_in ISO (PMID:17876721) MGI PMID:17876721 NCBI chrNW_004624883:2,031,208...2,056,379
Ensembl chrNW_004624883:2,030,783...2,055,519 		JBrowse link
G Idua alpha-L-iduronidase involved_in ISO (PMID:25854773)
(PMID:15979918)		 MGI PMID:15979918 PMID:25854773 NCBI chrNW_004624755:26,151,302...26,169,324
Ensembl chrNW_004624755:26,154,186...26,169,365 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase involved_in ISO (PMID:10588735) MGI PMID:10588735 NCBI chrNW_004624795:1,553,582...1,558,110
Ensembl chrNW_004624795:1,553,037...1,558,197 		JBrowse link
G Sgsh N-sulfoglucosamine sulfohydrolase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624801:9,287,776...9,297,164
Ensembl chrNW_004624801:9,285,806...9,297,151 		JBrowse link
heparin proteoglycan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idua alpha-L-iduronidase acts_upstream_of_or_within ISO (PMID:21873421)
(PMID:19751987)
(PMID:19834056)		 MGI PMID:19751987 PMID:19834056 PMID:21873421 NCBI chrNW_004624755:26,151,302...26,169,324
Ensembl chrNW_004624755:26,154,186...26,169,365 		JBrowse link
insulin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsd cathepsin D involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:14,661,058...14,671,116
Ensembl chrNW_004624767:14,660,936...14,671,671 		JBrowse link
G Ide insulin degrading enzyme involved_in ISO (PMID:19321446), (PMID:9231799), (PMID:9830016)
(PMID:24847884)
(PMID:27703010)		 UniProt
MGI		 PMID:9231799 PMID:9830016 PMID:19321446 PMID:24847884 PMID:27703010 NCBI chrNW_004624737:3,708,309...3,822,390
Ensembl chrNW_004624737:3,702,985...3,835,776 		JBrowse link
keratan sulfate proteoglycan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Glb1 galactosidase beta 1 involved_in ISO (PMID:31720227) FlyBase PMID:31720227 NCBI chrNW_004624788:10,970,657...11,110,839
Ensembl chrNW_004624788:10,970,652...11,111,722 		JBrowse link
G Gns glucosamine (N-acetyl)-6-sulfatase ISO RGD PMID:3161730 RGD:1600571 NCBI chrNW_004624802:3,637,250...3,668,698
Ensembl chrNW_004624802:3,636,906...3,666,033 		JBrowse link
lipoprotein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apob apolipoprotein B acts_upstream_of_or_within ISO (PMID:15863839) MGI PMID:15863839 NCBI chrNW_004624738:3,579,747...3,622,508
Ensembl chrNW_004624738:3,580,033...3,620,192 		JBrowse link
G Apoe apolipoprotein E acts_upstream_of_or_within ISO (PMID:17720994) MGI PMID:17720994 NCBI chrNW_004624907:1,752,322...1,755,308 JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO (PMID:15863839) MGI PMID:15863839 NCBI chrNW_004624784:2,933,172...3,080,131
Ensembl chrNW_004624784:2,937,499...3,078,216 		JBrowse link
G Ctsd cathepsin D involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:14,661,058...14,671,116
Ensembl chrNW_004624767:14,660,936...14,671,671 		JBrowse link
G Ldlr low density lipoprotein receptor acts_upstream_of_or_within ISO (PMID:15805190), (PMID:9788969)
(PMID:15741654)		 MGI PMID:9788969 PMID:15741654 PMID:15805190 NCBI chrNW_004624828:2,999,122...3,021,893
Ensembl chrNW_004624828:2,999,169...3,021,987 		JBrowse link
G Lipa lipase A, lysosomal acid type acts_upstream_of_or_within ISO (PMID:33357458) MGI PMID:33357458 NCBI chrNW_004624737:49,471...82,981
Ensembl chrNW_004624737:49,371...83,514 		JBrowse link
low-density lipoprotein particle receptor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcsk9 proprotein convertase subtilisin/kexin type 9 involved_in ISO (PMID:16912035), (PMID:18197702) HGNC-UCL PMID:16912035 PMID:18197702 NCBI chrNW_004624862:4,873,457...4,895,836
Ensembl chrNW_004624862:4,879,561...4,895,776 		JBrowse link
lysosomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within ISO (PMID:30930081) MGI PMID:30930081 NCBI chrNW_004624740:28,509,979...28,527,813
Ensembl chrNW_004624740:28,509,230...28,527,519 		JBrowse link
G Ccdc115 coiled-coil domain containing 115 involved_in ISO (PMID:28296633) UniProt PMID:28296633 NCBI chrNW_004624732:14,469,377...14,474,540
Ensembl chrNW_004624732:14,466,079...14,474,561 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624782:12,995,277...13,004,980
Ensembl chrNW_004624782:12,995,277...13,005,087 		JBrowse link
G Cst7 cystatin F involved_in ISO (PMID:15752368), (PMID:22365146) ARUK-UCL PMID:15752368 PMID:22365146 NCBI chrNW_004624939:471,699...475,338
Ensembl chrNW_004624939:471,706...475,545 		JBrowse link
G Ctsh cathepsin H involved_in ISO (PMID:15752368) ARUK-UCL PMID:15752368 NCBI chrNW_004624941:82,209...98,156
Ensembl chrNW_004624941:82,209...98,182 		JBrowse link
G Dpp7 dipeptidyl peptidase 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28728022) Ensembl
MGI		 PMID:28728022 GO_REF:0000107 NCBI chrNW_004624760:825,992...829,670
Ensembl chrNW_004624760:826,218...830,636 		JBrowse link
G Grn granulin precursor acts_upstream_of_or_within ISO (PMID:28728022) MGI PMID:28728022 NCBI chrNW_004624795:704,066...708,721
Ensembl chrNW_004624795:704,252...707,165 		JBrowse link
G Lamp2 lysosomal associated membrane protein 2 involved_in ISO (PMID:24880125) UniProt PMID:24880125 NCBI chrNW_004624931:297,864...343,314
Ensembl chrNW_004624931:298,328...343,915 		JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within ISO (PMID:27654426) MGI PMID:27654426 NCBI chrNW_004624777:8,831,246...8,877,881
Ensembl chrNW_004624777:8,827,851...8,877,873 		JBrowse link
G Mgat3 beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase acts_upstream_of ISO (PMID:25592972), (PMID:26467158) MGI PMID:25592972 PMID:26467158 NCBI chrNW_004624752:8,859,809...8,891,344
Ensembl chrNW_004624752:8,859,596...8,891,440 		JBrowse link
G Psap prosaposin acts_upstream_of_or_within ISO (PMID:12813057) MGI PMID:12813057 NCBI chrNW_004624754:5,725,697...5,753,575
Ensembl chrNW_004624754:5,726,681...5,753,575 		JBrowse link
G Slc17a9 solute carrier family 17 member 9 acts_upstream_of_or_within ISO (PMID:24962569) UniProt PMID:24962569 NCBI chrNW_004624741:28,707,739...28,730,695 JBrowse link
G Tmem106b transmembrane protein 106B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28728022) Ensembl
MGI		 PMID:28728022 GO_REF:0000107 NCBI chrNW_004624827:7,015,267...7,043,853
Ensembl chrNW_004624827:7,014,842...7,041,871 		JBrowse link
G Tmem199 transmembrane protein 199 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624786:961,888...965,911
Ensembl chrNW_004624786:961,890...966,430 		JBrowse link
G Tpp1 tripeptidyl peptidase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28728022) Ensembl
MGI		 PMID:28728022 GO_REF:0000107 NCBI chrNW_004624817:8,104,934...8,111,049
Ensembl chrNW_004624817:8,104,939...8,111,035 		JBrowse link
G Vps13a vacuolar protein sorting 13 homolog A involved_in ISO (PMID:30709847) UniProt PMID:30709847 NCBI chrNW_004624811:4,639,926...4,902,749
Ensembl chrNW_004624811:4,640,090...4,901,510 		JBrowse link
mannoprotein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edem1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in ISO (PMID:25092655) ParkinsonsUK-UCL PMID:25092655 NCBI chrNW_004624773:15,846,347...15,878,312
Ensembl chrNW_004624773:15,846,553...15,878,803 		JBrowse link
G Edem2 ER degradation enhancing alpha-mannosidase like protein 2 involved_in ISO (PMID:25092655) ParkinsonsUK-UCL PMID:25092655 NCBI chrNW_004624842:4,259,551...4,288,181
Ensembl chrNW_004624842:4,259,605...4,292,518 		JBrowse link
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 involved_in ISO (PMID:25092655)
(PMID:16431915)		 ParkinsonsUK-UCL PMID:16431915 PMID:25092655 NCBI chrNW_004624814:8,839,016...8,924,161
Ensembl chrNW_004624814:8,838,997...8,922,936 		JBrowse link
G Man1b1 mannosidase alpha class 1B member 1 involved_in ISO (PMID:10521544)
(PMID:18003979)		 ParkinsonsUK-UCL PMID:10521544 PMID:18003979 NCBI chrNW_004624760:813,657...826,020
Ensembl chrNW_004624760:813,045...825,153 		JBrowse link
mannose trimming involved in glycoprotein ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Man1a1 mannosidase alpha class 1A member 1 involved_in ISO (PMID:27108681) UniProt PMID:27108681 NCBI chrNW_004624798:10,986,465...11,117,182
Ensembl chrNW_004624798:10,986,519...11,117,650 		JBrowse link
membrane protein proteolysis involved in retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hm13 histocompatibility minor 13 involved_in ISO (PMID:25239945) ParkinsonsUK-UCL PMID:25239945 NCBI chrNW_004624741:924,040...977,646
Ensembl chrNW_004624741:921,023...977,703 		JBrowse link
G Rhbdd1 rhomboid domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624843:1,217,655...1,362,406
Ensembl chrNW_004624843:1,219,808...1,360,135 		JBrowse link
mitochondrial protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afg1l AFG1 like ATPase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624780:13,769,419...14,031,477
Ensembl chrNW_004624780:13,771,341...14,038,146 		JBrowse link
G Bnip3 BCL2 interacting protein 3 involved_in ISO (PMID:22292033) UniProt PMID:22292033 NCBI chrNW_004624737:14,848,355...14,863,731
Ensembl chrNW_004624737:14,848,350...14,862,965 		JBrowse link
G Bnip3l BCL2 interacting protein 3 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624758:21,284,165...21,309,957
Ensembl chrNW_004624758:21,284,167...21,310,398 		JBrowse link
G Pisd phosphatidylserine decarboxylase involved_in ISO (PMID:30858161) UniProt PMID:30858161 NCBI chrNW_004624747:8,036,416...8,074,609
Ensembl chrNW_004624747:8,032,855...8,074,677 		JBrowse link
G Spata18 spermatogenesis associated 18 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624761:17,578,125...17,642,356 JBrowse link
G Yme1l1 YME1 like 1 ATPase involved_in ISO (PMID:27495975), (PMID:27786171) UniProt PMID:27495975 PMID:27786171 NCBI chrNW_004624796:2,178,102...2,215,837
Ensembl chrNW_004624796:2,179,170...2,215,903 		JBrowse link
mitochondrial protein quality control term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afg1l AFG1 like ATPase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624780:13,769,419...14,031,477
Ensembl chrNW_004624780:13,771,341...14,038,146 		JBrowse link
G Afg3l2 AFG3 like matrix AAA peptidase subunit 2 involved_in ISO (PMID:26504172), (PMID:30683687), (PMID:34718584) UniProt PMID:26504172 PMID:30683687 PMID:34718584 NCBI chrNW_004624770:19,590,829...19,631,663
Ensembl chrNW_004624770:19,591,215...19,631,722 		JBrowse link
G Oxa1l OXA1L mitochondrial inner membrane insertase involved_in ISO (PMID:38199007) UniProt PMID:38199007 NCBI chrNW_004624820:9,757,615...9,763,686
Ensembl chrNW_004624820:9,757,840...9,763,640 		JBrowse link
G Tmem126a transmembrane protein 126A involved_in ISO (PMID:38199007) UniProt PMID:38199007 NCBI chrNW_004624845:4,264,497...4,272,973 JBrowse link
modification-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isg15 ISG15 ubiquitin like modifier acts_upstream_of_or_within ISO (PMID:15485925) MGI PMID:15485925 NCBI chrNW_004624818:8,510,657...8,511,749 JBrowse link
G Uba7 ubiquitin like modifier activating enzyme 7 acts_upstream_of_or_within ISO (PMID:15485925) MGI PMID:15485925 NCBI chrNW_004624730:3,720,516...3,729,586
Ensembl chrNW_004624730:3,718,573...3,730,097 		JBrowse link
G Ube2l6 ubiquitin conjugating enzyme E2 L6 acts_upstream_of_or_within ISO (PMID:15485925) MGI PMID:15485925 NCBI chrNW_004624864:3,103,656...3,113,349
Ensembl chrNW_004624864:3,108,380...3,113,349 		JBrowse link
negative regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsa cathepsin A involved_in ISO (PMID:12505983) ParkinsonsUK-UCL PMID:12505983 NCBI chrNW_004624790:8,686,027...8,692,119
Ensembl chrNW_004624790:8,686,027...8,691,898 		JBrowse link
G Snca synuclein alpha involved_in ISO (PMID:20697033) ParkinsonsUK-UCL PMID:20697033 NCBI chrNW_004624757:17,393,046...17,528,783
Ensembl chrNW_004624757:17,392,998...17,528,320 		JBrowse link
negative regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp11 aquaporin 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624863:679,049...694,765
Ensembl chrNW_004624863:678,953...694,505 		JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISO (PMID:23129660) UniProt PMID:23129660 NCBI chrNW_004624828:5,832,274...5,854,472
Ensembl chrNW_004624828:5,834,586...5,843,528 		JBrowse link
G Svip small VCP interacting protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624766:13,724,052...13,751,774
Ensembl chrNW_004624766:13,744,230...13,751,725 		JBrowse link
G Ubxn1 UBX domain protein 1 involved_in ISO (PMID:21135095) ParkinsonsUK-UCL PMID:21135095 NCBI chrNW_004624926:1,179,498...1,182,445
Ensembl chrNW_004624926:1,179,584...1,182,180 		JBrowse link
G Ubxn2a UBX domain protein 2A involved_in ISO (PMID:26265139) UniProt PMID:26265139 NCBI chrNW_004624738:6,313,925...6,341,999
Ensembl chrNW_004624738:6,323,404...6,341,996 		JBrowse link
G Usp14 ubiquitin specific peptidase 14 involved_in ISO (PMID:19135427) ParkinsonsUK-UCL PMID:19135427 NCBI chrNW_004624770:10,741,247...10,769,837 JBrowse link
G Usp25 ubiquitin specific peptidase 25 involved_in ISO (PMID:22590560) ParkinsonsUK-UCL PMID:22590560 NCBI chrNW_004624745:4,170,328...4,306,604
Ensembl chrNW_004624745:4,169,938...4,305,122 		JBrowse link
negative regulation of low-density lipoprotein particle receptor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa2 annexin A2 involved_in ISO (PMID:22848640) BHF-UCL PMID:22848640 NCBI chrNW_004624781:11,781,893...11,820,440
Ensembl chrNW_004624781:11,781,886...11,821,816 		JBrowse link
G Furin furin, paired basic amino acid cleaving enzyme involved_in ISO (PMID:16912035) HGNC-UCL PMID:16912035 NCBI chrNW_004624768:17,372,754...17,387,732
Ensembl chrNW_004624768:17,371,628...17,387,881 		JBrowse link
negative regulation of lysosomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Laptm4b lysosomal protein transmembrane 4 beta involved_in ISO (PMID:25588945) UniProt PMID:25588945 NCBI chrNW_004624763:4,991,562...5,036,624
Ensembl chrNW_004624763:4,991,548...5,038,138 		JBrowse link
G Mgat3 beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO (PMID:25592972), (PMID:26467158) MGI PMID:25592972 PMID:26467158 NCBI chrNW_004624752:8,859,809...8,891,344
Ensembl chrNW_004624752:8,859,596...8,891,440 		JBrowse link
G Usp8 ubiquitin specific peptidase 8 involved_in ISO (PMID:27444016) FlyBase PMID:27444016 NCBI chrNW_004624731:9,615,963...9,678,969
Ensembl chrNW_004624731:9,613,227...9,679,404 		JBrowse link
G Vps35 VPS35 retromer complex component involved_in ISO (PMID:26203154) ParkinsonsUK-UCL PMID:26203154 NCBI chrNW_004624914:160,483...188,534
Ensembl chrNW_004624914:160,483...188,490 		JBrowse link
negative regulation of membrane protein ectodomain proteolysis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il10 interleukin 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624807:4,687,249...4,691,658
Ensembl chrNW_004624807:4,687,176...4,691,732 		JBrowse link
G Lrig2 leucine rich repeats and immunoglobulin like domains 2 acts_upstream_of_or_within ISO (PMID:26651291) MGI PMID:26651291 NCBI chrNW_004624772:8,809,226...8,873,614
Ensembl chrNW_004624772:8,809,443...8,868,282 		JBrowse link
G Ptpn3 protein tyrosine phosphatase non-receptor type 3 involved_in ISO (PMID:12207026) BHF-UCL PMID:12207026 NCBI chrNW_004624758:2,011,998...2,170,096
Ensembl chrNW_004624758:2,011,732...2,170,348 		JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624978:120,723...125,006
Ensembl chrNW_004624978:121,803...124,912 		JBrowse link
G Timp2 TIMP metallopeptidase inhibitor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624801:8,228,618...8,270,606
Ensembl chrNW_004624801:8,228,357...8,270,982 		JBrowse link
G Timp3 TIMP metallopeptidase inhibitor 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624750:1,776,197...1,817,279
Ensembl chrNW_004624750:1,775,744...1,817,385 		JBrowse link
G Timp4 TIMP metallopeptidase inhibitor 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624956:331,275...341,561
Ensembl chrNW_004624956:330,327...337,299 		JBrowse link
negative regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:21,698,689...21,709,907
Ensembl chrNW_004624760:21,698,587...21,711,822 		JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in ISO (PMID:21669198) BHF-UCL PMID:21669198 NCBI chrNW_004624746:11,393,439...11,405,152
Ensembl chrNW_004624746:11,393,439...11,405,126 		JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 involved_in ISO PMID:17517623
(PMID:17517623)		 ARUK-UCL PMID:17517623 RGD:13514081 NCBI chrNW_004624754:15,609,932...15,615,580
Ensembl chrNW_004624754:15,609,920...15,614,263 		JBrowse link
G Lamp3 lysosomal associated membrane protein 3 involved_in ISO (PMID:25681212) ParkinsonsUK-UCL PMID:25681212 NCBI chrNW_004624730:73,264,110...73,298,951 JBrowse link
G LOC101701770 protein SCO1 homolog, mitochondrial acts_upstream_of_or_within ISO (PMID:25683716) MGI PMID:25683716 NCBI chrNW_004624786:13,038,384...13,053,250
Ensembl chrNW_004624786:13,036,426...13,053,210 		JBrowse link
G Marchf7 membrane associated ring-CH-type finger 7 involved_in ISO (PMID:29295817) UniProt PMID:29295817 NCBI chrNW_004624732:5,889,181...5,928,471 JBrowse link
G Ophn1 oligophrenin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624891:1,907,233...2,429,714
Ensembl chrNW_004624891:1,908,044...2,425,144 		JBrowse link
G Prkcg protein kinase C gamma involved_in ISO (PMID:23185022) UniProt PMID:23185022 NCBI chrNW_004624832:2,548,286...2,566,365
Ensembl chrNW_004624832:2,547,535...2,566,402 		JBrowse link
G Psme3ip1 proteasome activator subunit 3 interacting protein 1 involved_in ISO (PMID:29934401) UniProt PMID:29934401 NCBI chrNW_004624746:28,862,204...28,900,758
Ensembl chrNW_004624746:28,862,420...28,900,668 		JBrowse link
G Psmf1 proteasome inhibitor subunit 1 involved_in ISO (PMID:10764772) UniProt PMID:10764772 NCBI chrNW_004624741:2,402,616...2,443,461
Ensembl chrNW_004624741:2,409,187...2,443,071 		JBrowse link
G Usp19 ubiquitin specific peptidase 19 involved_in ISO (PMID:25088257) ParkinsonsUK-UCL PMID:25088257 NCBI chrNW_004624730:3,134,419...3,145,512
Ensembl chrNW_004624730:3,133,595...3,146,221 		JBrowse link
negative regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag5 BAG cochaperone 5 involved_in ISO (PMID:24475098) ParkinsonsUK-UCL PMID:24475098 NCBI chrNW_004624734:1,315,052...1,320,627 JBrowse link
G Bag6 BAG cochaperone 6 involved_in ISO (PMID:18678708) UniProt PMID:18678708 NCBI chrNW_004624754:24,559,483...24,571,073
Ensembl chrNW_004624754:24,559,801...24,571,073 		JBrowse link
G Camlg calcium modulating ligand involved_in ISO (PMID:20553626) UniProt PMID:20553626 NCBI chrNW_004624733:12,298,452...12,307,684
Ensembl chrNW_004624733:12,298,018...12,307,721 		JBrowse link
G Ccar2 cell cycle and apoptosis regulator 2 involved_in ISO (PMID:23398316) UniProt PMID:23398316 NCBI chrNW_004624758:18,106,621...18,120,910
Ensembl chrNW_004624758:18,106,606...18,120,907 		JBrowse link
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chrNW_004624824:8,174,653...8,400,760
Ensembl chrNW_004624824:8,174,610...8,400,723 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chrNW_004624741:1,566,380...1,635,365 JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chrNW_004624746:28,012,543...28,064,610
Ensembl chrNW_004624746:28,012,556...28,060,413 		JBrowse link
G Csnk2b casein kinase 2 beta involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chrNW_004624754:24,533,134...24,538,233 JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:28263186) UniProt PMID:28263186 NCBI chrNW_004624741:4,292,256...4,305,424
Ensembl chrNW_004624741:4,292,256...4,305,504 		JBrowse link
G Eif3h eukaryotic translation initiation factor 3 subunit H involved_in ISO (PMID:32269044) FlyBase PMID:32269044 NCBI chrNW_004624763:14,938,624...15,027,001
Ensembl chrNW_004624763:14,935,271...15,027,010 		JBrowse link
G Fhit fragile histidine triad diadenosine triphosphatase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624822:6,621,609...8,069,590
Ensembl chrNW_004624822:6,621,909...7,380,047 		JBrowse link
G Hfe homeostatic iron regulator involved_in ISO (PMID:24904118) BHF-UCL PMID:24904118 NCBI chrNW_004624756:821,738...831,482
Ensembl chrNW_004624756:823,947...831,376 		JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 involved_in ISO (PMID:24613385) UniProt PMID:24613385 NCBI chrNW_004624754:15,609,932...15,615,580
Ensembl chrNW_004624754:15,609,920...15,614,263 		JBrowse link
G Klhl40 kelch like family member 40 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24960163) MGI
TreeGrafter		 PMID:24960163 GO_REF:0000118 NCBI chrNW_004624730:77,004,787...77,012,643
Ensembl chrNW_004624730:77,007,063...77,011,413 		JBrowse link
G Map1a microtubule associated protein 1A involved_in ISO (PMID:26609151) ARUK-UCL PMID:26609151 NCBI chrNW_004624804:10,611,657...10,632,199
Ensembl chrNW_004624804:10,611,672...10,630,881 		JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of_or_within ISO (PMID:23695157) MGI PMID:23695157 NCBI chrNW_004624923:952,782...1,062,391 JBrowse link
G N4bp1 NEDD4 binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624914:2,319,809...2,369,128
Ensembl chrNW_004624914:2,319,474...2,369,078 		JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:22522597) UniProt PMID:22522597 NCBI chrNW_004624832:6,144,260...6,154,172
Ensembl chrNW_004624832:6,145,749...6,154,411 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in ISO (PMID:26678539) UniProt PMID:26678539 NCBI chrNW_004624903:1,863,110...1,912,299
Ensembl chrNW_004624903:1,863,337...1,910,177 		JBrowse link
G Park7 Parkinsonism associated deglycase acts_upstream_of ISO (PMID:17015834) ParkinsonsUK-UCL PMID:17015834 NCBI chrNW_004624818:3,900,917...3,915,457
Ensembl chrNW_004624818:3,900,917...3,911,042 		JBrowse link
G Pbk PDZ binding kinase acts_upstream_of_or_within ISO (PMID:21715333) MGI PMID:21715333 NCBI chrNW_004624758:22,603,076...22,625,817
Ensembl chrNW_004624758:22,603,039...22,625,763 		JBrowse link
G Phf20l1 PHD finger protein 20 like 1 involved_in ISO (PMID:24492612) UniProt PMID:24492612 NCBI chrNW_004624735:23,101,075...23,171,195
Ensembl chrNW_004624735:23,101,075...23,171,145 		JBrowse link
G Rgs19 regulator of G protein signaling 19 involved_in ISO (PMID:11546783) BHF-UCL PMID:11546783 NCBI chrNW_004624741:29,700,033...29,705,297
Ensembl chrNW_004624741:29,700,045...29,705,206 		JBrowse link
G Rpl11 ribosomal protein L11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:8,258,656...8,262,842
Ensembl chrNW_004624764:8,258,709...8,266,016 		JBrowse link
G Rybp RING1 and YY1 binding protein involved_in ISO (PMID:27060496) UniProt PMID:27060496 NCBI chrNW_004624773:6,899,927...6,993,434
Ensembl chrNW_004624773:6,899,927...6,993,526 		JBrowse link
G Senp1 SUMO specific peptidase 1 acts_upstream_of_or_within ISO (PMID:17981124) MGI PMID:17981124 NCBI chrNW_004624816:4,173,321...4,231,711
Ensembl chrNW_004624816:4,179,890...4,232,312 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:16611981) MGI PMID:16611981 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Smarcc1 SWI/SNF related BAF chromatin remodeling complex subunit C1 acts_upstream_of_or_within ISO (PMID:22285184) MGI PMID:22285184 NCBI chrNW_004624730:73,696,734...73,856,082
Ensembl chrNW_004624730:73,696,749...73,856,082 		JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in ISO (PMID:11278372) BHF-UCL PMID:11278372 NCBI chrNW_004624905:240,760...244,656
Ensembl chrNW_004624905:240,760...244,656 		JBrowse link
G Tlk2 tousled like kinase 2 involved_in ISO (PMID:20016786) UniProt PMID:20016786 NCBI chrNW_004624849:24,536...150,142
Ensembl chrNW_004624849:24,867...151,002 		JBrowse link
G Ttc36 tetratricopeptide repeat domain 36 acts_upstream_of_or_within ISO (PMID:31537781) MGI PMID:31537781 NCBI chrNW_004624784:13,913,218...13,931,581
Ensembl chrNW_004624784:13,913,225...13,931,581 		JBrowse link
G Ubxn1 UBX domain protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624926:1,179,498...1,182,445
Ensembl chrNW_004624926:1,179,584...1,182,180 		JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in ISO (PMID:23770237) UniProt PMID:23770237 NCBI chrNW_004624814:529,100...568,387
Ensembl chrNW_004624814:529,084...567,666 		JBrowse link
G Usp26 ubiquitin specific peptidase 26 involved_in ISO (PMID:28839133) UniProt PMID:28839133 NCBI chrNW_004624797:12,724,584...12,797,308 JBrowse link
G Usp38 ubiquitin specific peptidase 38 involved_in ISO (PMID:34102342) UniProt PMID:34102342 NCBI chrNW_004624853:2,485,347...2,519,165
Ensembl chrNW_004624853:2,485,332...2,518,070 		JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in ISO (PMID:26678539) UniProt PMID:26678539 NCBI chrNW_004624824:6,277,111...6,338,051
Ensembl chrNW_004624824:6,276,354...6,338,227 		JBrowse link
G Usp9x ubiquitin specific peptidase 9 X-linked involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624762:14,403,361...14,527,854
Ensembl chrNW_004624762:14,405,560...14,527,639 		JBrowse link
G Wac WW domain containing adaptor with coiled-coil involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chrNW_004624805:6,813,100...6,898,686 JBrowse link
negative regulation of protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrb1 adhesion G protein-coupled receptor B1 involved_in ISO (PMID:25751059) UniProt PMID:25751059 NCBI chrNW_004624735:14,049,621...14,126,287
Ensembl chrNW_004624735:14,050,213...14,113,534 		JBrowse link
G Agap2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 acts_upstream_of_or_within ISO (PMID:18374643) MGI PMID:18374643 NCBI chrNW_004624802:10,205,376...10,219,977
Ensembl chrNW_004624802:10,205,375...10,218,288 		JBrowse link
G Atraid all-trans retinoic acid induced differentiation factor involved_in ISO (PMID:21723284) UniProt PMID:21723284 NCBI chrNW_004624738:9,311,746...9,318,099
Ensembl chrNW_004624738:9,311,836...9,317,861 		JBrowse link
G Azin1 antizyme inhibitor 1 involved_in ISO
IEA		 downregulates antizyme degradation of ODC RGD
TreeGrafter		 PMID:8631929 GO_REF:0000118 RGD:633334 NCBI chrNW_004624763:19,643,980...19,667,125
Ensembl chrNW_004624763:19,643,980...19,667,125 		JBrowse link
G Azin2 antizyme inhibitor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:16,145,696...16,177,588
Ensembl chrNW_004624764:16,145,308...16,175,000 		JBrowse link
G Banp BTG3 associated nuclear protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624746:1,205,212...1,287,108
Ensembl chrNW_004624746:1,203,275...1,286,241 		JBrowse link
G Cdk2 cyclin dependent kinase 2 involved_in ISO (PMID:15750306) AgBase PMID:15750306 NCBI chrNW_004624802:12,076,443...12,082,608
Ensembl chrNW_004624802:12,076,443...12,082,630 		JBrowse link
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 involved_in ISO (PMID:16173922) UniProt PMID:16173922 NCBI chrNW_004624795:4,594,131...4,602,435
Ensembl chrNW_004624795:4,594,207...4,602,583 		JBrowse link
G Dab2ip DAB2 interacting protein involved_in ISO (PMID:19903888) UniProt PMID:19903888 NCBI chrNW_004624760:13,472,500...13,658,070
Ensembl chrNW_004624760:13,472,672...13,657,930 		JBrowse link
G Dedd death effector domain containing acts_upstream_of_or_within ISO (PMID:21135503) MGI PMID:21135503 NCBI chrNW_004624794:243,584...254,495
Ensembl chrNW_004624794:244,068...255,110 		JBrowse link
G Dysf dysferlin acts_upstream_of_or_within ISO (PMID:20724702) MGI PMID:20724702 NCBI chrNW_004624762:1,936,775...2,166,817
Ensembl chrNW_004624762:1,936,775...2,166,825 		JBrowse link
G Egfr epidermal growth factor receptor involved_in ISO (PMID:17115032) UniProt PMID:17115032 NCBI chrNW_004624740:584,133...713,205
Ensembl chrNW_004624740:589,606...713,271 		JBrowse link
G Flna filamin A involved_in ISO (PMID:18322202) BHF-UCL PMID:18322202 NCBI chrNW_004624946:812,278...836,307
Ensembl chrNW_004624946:812,287...837,273 		JBrowse link
G Fmn2 formin 2 involved_in ISO (PMID:23375502) UniProt PMID:23375502 NCBI chrNW_004624771:10,641,845...10,956,213
Ensembl chrNW_004624771:10,642,515...10,953,480 		JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase acts_upstream_of_or_within ISO (PMID:16841086) MGI PMID:16841086 NCBI chrNW_004624933:248,298...456,933
Ensembl chrNW_004624933:389,627...456,520 		JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A acts_upstream_of_or_within ISO (PMID:15317856) MGI PMID:15317856 NCBI chrNW_004624824:7,128,169...7,513,360
Ensembl chrNW_004624824:7,137,909...7,507,910 		JBrowse link
G Grin2c glutamate ionotropic receptor NMDA type subunit 2C acts_upstream_of_or_within ISO (PMID:15317856) MGI PMID:15317856 NCBI chrNW_004624801:4,697,891...4,713,771
Ensembl chrNW_004624801:4,697,512...4,712,276 		JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase involved_in ISO (PMID:20876579) ARUK-UCL PMID:20876579 NCBI chrNW_004624951:681,559...711,476
Ensembl chrNW_004624951:682,178...711,474 		JBrowse link
G Ins insulin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:14,999,088...15,000,035
Ensembl chrNW_004624767:14,999,088...15,000,035 		JBrowse link
G Irak3 interleukin 1 receptor associated kinase 3 involved_in ISO (PMID:17379480), (PMID:18156187) BHF-UCL PMID:17379480 PMID:18156187 NCBI chrNW_004624802:2,042,486...2,098,921
Ensembl chrNW_004624802:2,047,409...2,098,545 		JBrowse link
G LOC101724157 lanosterol 14-alpha demethylase involved_in ISO (PMID:20876579) ARUK-UCL PMID:20876579 NCBI chrNW_004624809:1,080,427...1,110,802
Ensembl chrNW_004624809:1,080,656...1,100,254 		JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 involved_in ISO (PMID:11459826) UniProt PMID:11459826 NCBI chrNW_004624818:1,274,553...1,286,750
Ensembl chrNW_004624818:1,282,082...1,286,997 		JBrowse link
G Mdm4 MDM4 regulator of p53 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624807:6,480,785...6,522,149
Ensembl chrNW_004624807:6,486,333...6,522,801 		JBrowse link
G Mycbp2 MYC binding protein 2 acts_upstream_of_or_within ISO (PMID:19398581) MGI PMID:19398581 NCBI chrNW_004624751:23,048,373...23,355,510
Ensembl chrNW_004624751:23,048,404...23,355,510 		JBrowse link
G Nell1 neural EGFL like 1 involved_in ISO (PMID:21723284) UniProt PMID:21723284 NCBI chrNW_004624766:11,921,570...12,734,032
Ensembl chrNW_004624766:11,921,650...12,737,576 		JBrowse link
G Nos2 nitric oxide synthase 2 involved_in ISO (PMID:18003616) BHF-UCL PMID:18003616 NCBI chrNW_004624786:491,944...530,427
Ensembl chrNW_004624786:489,311...528,271 		JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 involved_in ISO (PMID:15687255) UniProt PMID:15687255 NCBI chrNW_004624746:16,684,620...16,698,194
Ensembl chrNW_004624746:16,684,407...16,697,479 		JBrowse link
G Nrg1 neuregulin 1 acts_upstream_of_or_within ISO (PMID:20448149) MGI PMID:20448149 NCBI chrNW_004624780:11,297,306...11,525,236
Ensembl chrNW_004624780:11,301,182...12,424,066 		JBrowse link
G Park7 Parkinsonism associated deglycase involved_in ISO (PMID:24899725) ParkinsonsUK-UCL PMID:24899725 NCBI chrNW_004624818:3,900,917...3,915,457
Ensembl chrNW_004624818:3,900,917...3,911,042 		JBrowse link
G Phb1 prohibitin 1 involved_in ISO (PMID:24732013) UniProt PMID:24732013 NCBI chrNW_004624795:5,556,728...5,565,969
Ensembl chrNW_004624795:5,556,450...5,565,988 		JBrowse link
G Phf20l1 PHD finger protein 20 like 1 involved_in ISO (PMID:29358331) UniProt PMID:29358331 NCBI chrNW_004624735:23,101,075...23,171,195
Ensembl chrNW_004624735:23,101,075...23,171,145 		JBrowse link
G Pin1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 involved_in ISO (PMID:11533658) ParkinsonsUK-UCL PMID:11533658 NCBI chrNW_004624828:2,121,262...2,131,645
Ensembl chrNW_004624828:2,121,329...2,131,645 		JBrowse link
G Prkcg protein kinase C gamma involved_in ISO (PMID:15808853) HGNC-UCL PMID:15808853 NCBI chrNW_004624832:2,548,286...2,566,365
Ensembl chrNW_004624832:2,547,535...2,566,402 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15923614) Ensembl
MGI		 PMID:15923614 GO_REF:0000107 NCBI chrNW_004624767:20,732,813...20,742,016
Ensembl chrNW_004624767:20,732,938...20,741,272 		JBrowse link
G Rgp1 RGP1 homolog, RAB6A GEF complex partner 1 involved_in ISO (PMID:23091056) UniProt PMID:23091056 NCBI chrNW_004624868:5,027,481...5,055,392
Ensembl chrNW_004624868:5,041,653...5,045,466 		JBrowse link
G Ric1 RIC1 homolog, RAB6A GEF complex partner 1 involved_in ISO (PMID:23091056) UniProt PMID:23091056 NCBI chrNW_004624736:10,161,772...10,337,585 JBrowse link
G Rilp Rab interacting lysosomal protein involved_in ISO (PMID:17010938) UniProt PMID:17010938 NCBI chrNW_004624786:4,352,391...4,355,905
Ensembl chrNW_004624786:4,352,772...4,355,613 		JBrowse link
G Serpine2 serpin family E member 2 acts_upstream_of_or_within ISO (PMID:16319172)
(PMID:15509762)		 MGI PMID:15509762 PMID:16319172 NCBI chrNW_004624823:1,261,458...1,326,261
Ensembl chrNW_004624823:1,261,406...1,326,917 		JBrowse link
G Sf3b3 splicing factor 3b subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:12,747,346...12,793,639
Ensembl chrNW_004624746:12,747,382...12,793,643 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:16611981) MGI PMID:16611981 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Sirt2 sirtuin 2 involved_in ISO (PMID:20543840) UniProt PMID:20543840 NCBI chrNW_004624794:12,239,363...12,259,561
Ensembl chrNW_004624794:12,235,263...12,259,276 		JBrowse link
G Smad3 SMAD family member 3 involved_in ISO PMID:16690606
PMID:20097766		 CACAO
BHF-UCL		 PMID:16690606 PMID:20097766 RGD:11079190 RGD:15023472 NCBI chrNW_004624781:5,795,652...5,890,047
Ensembl chrNW_004624781:5,795,652...5,890,371 		JBrowse link
G Smad4 SMAD family member 4 involved_in ISO PMID:20097766 BHF-UCL PMID:20097766 RGD:11079190 NCBI chrNW_004624778:14,570,025...14,629,950
Ensembl chrNW_004624778:14,570,348...14,630,325 		JBrowse link
G Snx12 sorting nexin 12 involved_in ISO (PMID:22719997) UniProt PMID:22719997 NCBI chrNW_004624903:1,357,298...1,366,849
Ensembl chrNW_004624903:1,118,965...1,367,179 		JBrowse link
G Snx3 sorting nexin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624780:14,043,002...14,080,380
Ensembl chrNW_004624780:14,043,003...14,080,380 		JBrowse link
G Tmem132a transmembrane protein 132A acts_upstream_of_or_within ISO (PMID:33324648) MGI PMID:33324648 NCBI chrNW_004624926:286,216...294,329
Ensembl chrNW_004624926:286,227...292,714 		JBrowse link
G Trim40 tripartite motif containing 40 involved_in ISO (PMID:21474709) UniProt PMID:21474709 NCBI chrNW_004624754:25,278,747...25,285,378 JBrowse link
negative regulation of proteolysis involved in protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Efna1 ephrin A1 involved_in ISO (PMID:24217950) ARUK-UCL PMID:24217950 NCBI chrNW_004624885:2,382,712...2,388,805
Ensembl chrNW_004624885:2,383,045...2,389,107 		JBrowse link
G Epha4 EPH receptor A4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:3,555,273...3,697,794
Ensembl chrNW_004624823:3,555,288...3,698,990 		JBrowse link
G Ufsp2 UFM1 specific peptidase 2 involved_in ISO (PMID:36543799) UniProt PMID:36543799 NCBI chrNW_004624769:16,254,446...16,281,099
Ensembl chrNW_004624769:16,254,446...16,281,025 		JBrowse link
negative regulation of retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Derl2 derlin 2 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004624786:9,274,302...9,285,645
Ensembl chrNW_004624786:9,274,302...9,285,288 		JBrowse link
G Derl3 derlin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:10,357,560...10,359,779
Ensembl chrNW_004624747:10,357,627...10,359,779 		JBrowse link
G Erlec1 endoplasmic reticulum lectin 1 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004624833:7,964,815...7,992,277
Ensembl chrNW_004624833:7,964,810...7,992,582 		JBrowse link
G Os9 OS9 endoplasmic reticulum lectin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624802:10,221,633...10,252,008
Ensembl chrNW_004624802:10,222,259...10,252,039 		JBrowse link
G Svip small VCP interacting protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624766:13,724,052...13,751,774
Ensembl chrNW_004624766:13,744,230...13,751,725 		JBrowse link
G Ubac2 UBA domain containing 2 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004624793:11,658,268...11,824,632
Ensembl chrNW_004624793:11,657,526...11,824,570 		JBrowse link
G Ube2g2 ubiquitin conjugating enzyme E2 G2 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004624745:30,353,530...30,382,780
Ensembl chrNW_004624745:30,353,369...30,382,782 		JBrowse link
G Ube2j1 ubiquitin conjugating enzyme E2 J1 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004624799:4,811,686...4,838,708
Ensembl chrNW_004624799:4,811,649...4,841,511 		JBrowse link
G Yod1 YOD1 deubiquitinase involved_in ISO (PMID:24068323) ParkinsonsUK-UCL PMID:24068323 NCBI chrNW_004624807:4,443,653...4,448,759
Ensembl chrNW_004624807:4,443,650...4,446,373 		JBrowse link
negative regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pabpn1l PABPN1 like, cytoplasmic acts_upstream_of_or_within ISO (PMID:32558204) MGI PMID:32558204 NCBI chrNW_004624746:776,692...779,187
Ensembl chrNW_004624746:776,677...779,555 		JBrowse link
G Styx serine/threonine/tyrosine interacting protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:16,342,926...16,384,673
Ensembl chrNW_004624731:16,352,503...16,384,624 		JBrowse link
negative regulation of ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anks1a ankyrin repeat and sterile alpha motif domain containing 1A acts_upstream_of_or_within ISO (PMID:20100865) MGI PMID:20100865 NCBI chrNW_004624754:22,306,363...22,463,273
Ensembl chrNW_004624754:22,309,812...22,463,170 		JBrowse link
G Hfe homeostatic iron regulator involved_in ISO (PMID:24904118) BHF-UCL PMID:24904118 NCBI chrNW_004624756:821,738...831,482
Ensembl chrNW_004624756:823,947...831,376 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:21628596) FlyBase PMID:21628596 NCBI chrNW_004624765:19,912,623...20,105,016
Ensembl chrNW_004624765:19,923,297...20,042,840 		JBrowse link
G Pdcl3 phosducin like 3 acts_upstream_of_or_within ISO (PMID:23792958) MGI PMID:23792958 NCBI chrNW_004624749:5,410,501...5,419,625
Ensembl chrNW_004624749:5,410,476...5,422,533 		JBrowse link
G Pml PML nuclear body scaffold involved_in ISO (PMID:15195100) UniProt PMID:15195100 NCBI chrNW_004624781:464,858...498,146
Ensembl chrNW_004624781:464,658...497,775 		JBrowse link
G Prmt6 protein arginine methyltransferase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624772:3,071,601...3,075,866
Ensembl chrNW_004624772:3,071,844...3,075,601 		JBrowse link
G Psen1 presenilin 1 involved_in ISO (PMID:20208556) BHF-UCL PMID:20208556 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743 		JBrowse link
G Psen2 presenilin 2 involved_in ISO (PMID:20208556) BHF-UCL PMID:20208556 NCBI chrNW_004624771:17,183,538...17,205,460
Ensembl chrNW_004624771:17,183,447...17,224,188 		JBrowse link
G Qrich2 glutamine rich 2 involved_in ISO (PMID:30683861) UniProt PMID:30683861 NCBI chrNW_004624801:6,152,552...6,175,351
Ensembl chrNW_004624801:6,151,558...6,175,078 		JBrowse link
G Rpl11 ribosomal protein L11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:8,258,656...8,262,842
Ensembl chrNW_004624764:8,258,709...8,266,016 		JBrowse link
G Rpl23 ribosomal protein L23 involved_in ISO (PMID:15314173) CAFA PMID:15314173 NCBI chrNW_004624795:3,875,181...3,880,386
Ensembl chrNW_004624795:3,874,977...3,883,068 		JBrowse link
G Rpl5 ribosomal protein L5 involved_in ISO (PMID:18560357) CAFA PMID:18560357 NCBI chrNW_004624742:4,973,229...4,983,361 JBrowse link
G Rps7 ribosomal protein S7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624846:5,185,236...5,190,357
Ensembl chrNW_004624846:5,185,236...5,190,260 		JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISO (PMID:23129660) UniProt PMID:23129660 NCBI chrNW_004624828:5,832,274...5,854,472
Ensembl chrNW_004624828:5,834,586...5,843,528 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO (PMID:19684112) MGI PMID:19684112 NCBI chrNW_004624831:1,882,114...2,012,341
Ensembl chrNW_004624831:1,882,077...2,012,341 		JBrowse link
G Svip small VCP interacting protein involved_in ISO PMID:17000876 ParkinsonsUK-UCL PMID:17000876 RGD:10047192 NCBI chrNW_004624766:13,724,052...13,751,774
Ensembl chrNW_004624766:13,744,230...13,751,725 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:17237821) ParkinsonsUK-UCL PMID:17237821 NCBI chrNW_004624903:1,698,201...1,774,607 JBrowse link
G Usp14 ubiquitin specific peptidase 14 involved_in ISO (PMID:19135427) ParkinsonsUK-UCL PMID:19135427 NCBI chrNW_004624770:10,741,247...10,769,837 JBrowse link
G Usp5 ubiquitin specific peptidase 5 involved_in ISO (PMID:24424410) ParkinsonsUK-UCL PMID:24424410 NCBI chrNW_004624860:3,519,106...3,532,690
Ensembl chrNW_004624860:3,519,113...3,532,687 		JBrowse link
G Wnt1 Wnt family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16601693) Ensembl
MGI		 PMID:16601693 GO_REF:0000107 NCBI chrNW_004624816:3,209,605...3,212,969
Ensembl chrNW_004624816:3,209,699...3,212,606 		JBrowse link
nuclear protein quality control by the ubiquitin-proteasome system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akirin2 akirin 2 acts_upstream_of_positive_effect
involved_in		 ISO
IEA		 (PMID:34711951) UniProt
Ensembl		 PMID:34711951 GO_REF:0000107 NCBI chrNW_004624799:6,620,102...6,644,286
Ensembl chrNW_004624799:6,625,549...6,644,286 		JBrowse link
G Cul3 cullin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:767,347...854,065
Ensembl chrNW_004624823:766,780...852,727 		JBrowse link
G Klhl15 kelch like family member 15 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624897:361,663...429,401
Ensembl chrNW_004624897:357,551...406,561 		JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:37478846), (PMID:37478862) UniProt PMID:37478846 PMID:37478862 NCBI chrNW_004624763:19,414,582...19,530,539
Ensembl chrNW_004624763:19,414,549...19,530,517 		JBrowse link
oxidation-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lonp1 lon peptidase 1, mitochondrial involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624828:4,494,786...4,516,772
Ensembl chrNW_004624828:4,494,813...4,516,510 		JBrowse link
positive regulation of anaphase-promoting complex-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc20 cell division cycle 20 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624892:2,675,980...2,679,709
Ensembl chrNW_004624892:2,675,754...2,679,793 		JBrowse link
G Cdc20b cell division cycle 20B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624759:4,112,012...4,174,838
Ensembl chrNW_004624759:4,109,203...4,176,824 		JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:6,236,861...6,254,763
Ensembl chrNW_004624828:6,236,842...6,256,679 		JBrowse link
positive regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plk3 polo like kinase 3 involved_in ISO (PMID:27344333) ParkinsonsUK-UCL PMID:27344333 NCBI chrNW_004624906:678,517...693,644
Ensembl chrNW_004624906:688,707...693,326 		JBrowse link
positive regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn3 ataxin 3 involved_in ISO (PMID:17000876) ParkinsonsUK-UCL PMID:17000876 NCBI chrNW_004624734:8,685,994...8,726,329 JBrowse link
G Bag6 BAG cochaperone 6 involved_in ISO (PMID:24424410) ParkinsonsUK-UCL PMID:24424410 NCBI chrNW_004624754:24,559,483...24,571,073
Ensembl chrNW_004624754:24,559,801...24,571,073 		JBrowse link
G Bcap31 B cell receptor associated protein 31 involved_in ISO (PMID:18555783) ParkinsonsUK-UCL PMID:18555783 NCBI chrNW_004624946:398,901...420,767
Ensembl chrNW_004624946:399,227...419,642 		JBrowse link
G Cav1 caveolin 1 involved_in ISO (PMID:24089527) ParkinsonsUK-UCL PMID:24089527 NCBI chrNW_004624827:2,844,855...2,878,367
Ensembl chrNW_004624827:2,844,115...2,879,179 		JBrowse link
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:29,069,995...29,081,085
Ensembl chrNW_004624746:29,068,350...29,081,085 		JBrowse link
G Rnf185 ring finger protein 185 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:7,642,198...7,693,944
Ensembl chrNW_004624747:7,641,916...7,694,033 		JBrowse link
G Rnft1 ring finger protein, transmembrane 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624871:1,707,570...1,721,026
Ensembl chrNW_004624871:1,707,509...1,721,078 		JBrowse link
G Rnft2 ring finger protein, transmembrane 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624747:16,346,149...16,459,312
Ensembl chrNW_004624747:16,389,005...16,459,805 		JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISO (PMID:23246001) ParkinsonsUK-UCL PMID:23246001 NCBI chrNW_004624828:5,832,274...5,854,472
Ensembl chrNW_004624828:5,834,586...5,843,528 		JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in ISO (PMID:26265139) UniProt PMID:26265139 NCBI chrNW_004624913:1,491,873...1,494,249
Ensembl chrNW_004624913:1,491,991...1,494,249 		JBrowse link
G Tmem259 transmembrane protein 259 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:7,606,177...7,614,644
Ensembl chrNW_004624828:7,606,339...7,614,107 		JBrowse link
G Tmem67 transmembrane protein 67 ISO RGD PMID:19815549 RGD:8554391 NCBI chrNW_004624763:1,219,779...1,281,297
Ensembl chrNW_004624763:1,219,827...1,264,071 		JBrowse link
G Tmx1 thioredoxin related transmembrane protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624731:17,713,812...17,730,521
Ensembl chrNW_004624731:17,718,868...17,730,586 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO (PMID:18307982) UniProt PMID:18307982 NCBI chrNW_004624809:6,434,842...6,487,442
Ensembl chrNW_004624809:6,436,658...6,487,251 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO (PMID:18307982) UniProt PMID:18307982 NCBI chrNW_004624910:1,547,942...1,551,323
Ensembl chrNW_004624910:1,548,249...1,550,126 		JBrowse link
G Usp13 ubiquitin specific peptidase 13 involved_in ISO (PMID:24424410) ParkinsonsUK-UCL PMID:24424410 NCBI chrNW_004624730:57,384,878...57,495,761
Ensembl chrNW_004624730:57,384,884...57,495,765 		JBrowse link
G Wfs1 wolframin ER transmembrane glycoprotein involved_in ISO (PMID:19911006) MGI PMID:19911006 NCBI chrNW_004624755:22,818,653...22,841,717
Ensembl chrNW_004624755:22,824,143...22,841,850 		JBrowse link
positive regulation of low-density lipoprotein particle receptor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca2 ATP binding cassette subfamily A member 2 acts_upstream_of ISO (PMID:21810484) ARUK-UCL PMID:21810484 NCBI chrNW_004624760:880,216...898,753
Ensembl chrNW_004624760:880,148...898,751 		JBrowse link
G Apoe apolipoprotein E involved_in ISO (PMID:15950758) BHF-UCL PMID:15950758 NCBI chrNW_004624907:1,752,322...1,755,308 JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 involved_in ISO (PMID:22848640) BHF-UCL PMID:22848640 NCBI chrNW_004624862:4,873,457...4,895,836
Ensembl chrNW_004624862:4,879,561...4,895,776 		JBrowse link
positive regulation of lysosomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ldlr low density lipoprotein receptor involved_in ISO (PMID:22383525) ARUK-UCL PMID:22383525 NCBI chrNW_004624828:2,999,122...3,021,893
Ensembl chrNW_004624828:2,999,169...3,021,987 		JBrowse link
G Lrp1 LDL receptor related protein 1 involved_in ISO (PMID:23152628) ARUK-UCL PMID:23152628 NCBI chrNW_004624802:10,734,907...10,812,888
Ensembl chrNW_004624802:10,734,263...10,812,763 		JBrowse link
G Lrp2 LDL receptor related protein 2 involved_in ISO (PMID:9228033) ARUK-UCL PMID:9228033 NCBI chrNW_004624787:6,797,462...6,998,859
Ensembl chrNW_004624787:6,798,938...6,998,697 		JBrowse link
G Marchf2 membrane associated ring-CH-type finger 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624828:1,182,261...1,197,327
Ensembl chrNW_004624828:1,181,870...1,199,307 		JBrowse link
positive regulation of membrane protein ectodomain proteolysis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam8 ADAM metallopeptidase domain 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624737:13,459,274...13,474,686 JBrowse link
G Adam9 ADAM metallopeptidase domain 9 involved_in ISO (PMID:9857183) BHF-UCL PMID:9857183 NCBI chrNW_004624780:4,482,696...4,612,475
Ensembl chrNW_004624780:4,480,647...4,612,477 		JBrowse link
G Adra2a adrenoceptor alpha 2A involved_in ISO (PMID:17655843) BHF-UCL PMID:17655843 NCBI chrNW_004624737:35,262,779...35,265,566
Ensembl chrNW_004624737:35,264,099...35,265,490 		JBrowse link
G Apoe apolipoprotein E involved_in ISO (PMID:15950758)
(PMID:25015123)		 BHF-UCL
ARUK-UCL		 PMID:15950758 PMID:25015123 NCBI chrNW_004624907:1,752,322...1,755,308 JBrowse link
G App amyloid beta precursor protein involved_in ISO (PMID:25015123) ARUK-UCL PMID:25015123 NCBI chrNW_004624745:13,904,912...14,159,374
Ensembl chrNW_004624745:13,902,577...14,159,372 		JBrowse link
G Gpld1 glycosylphosphatidylinositol specific phospholipase D1 involved_in ISO (PMID:17720976) UniProt PMID:17720976 NCBI chrNW_004624756:2,505,937...2,569,618
Ensembl chrNW_004624756:2,505,945...2,569,464 		JBrowse link
G Ifng interferon gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624802:163,261...166,534
Ensembl chrNW_004624802:163,261...166,534 		JBrowse link
G Il1b interleukin 1 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624749:12,852,128...12,858,478
Ensembl chrNW_004624749:12,852,021...12,858,760 		JBrowse link
G Nrdc nardilysin convertase involved_in ISO (PMID:18355445)
(PMID:19935654)		 BHF-UCL
UniProt		 PMID:18355445 PMID:19935654 NCBI chrNW_004624859:1,284,251...1,351,497
Ensembl chrNW_004624859:1,284,266...1,352,226 		JBrowse link
G Pacsin3 protein kinase C and casein kinase substrate in neurons 3 involved_in ISO (PMID:15280379) BHF-UCL PMID:15280379 NCBI chrNW_004624767:1,505,617...1,512,606
Ensembl chrNW_004624767:1,505,633...1,512,610 		JBrowse link
G Rgma repulsive guidance molecule BMP co-receptor a acts_upstream_of_or_within ISO (PMID:26651291) MGI PMID:26651291 NCBI chrNW_004624768:10,739,674...10,778,036
Ensembl chrNW_004624768:10,751,991...10,778,050 		JBrowse link
G Sh3d19 SH3 domain containing 19 involved_in ISO (PMID:15280379) BHF-UCL PMID:15280379 NCBI chrNW_004624858:2,558,035...2,750,502
Ensembl chrNW_004624858:2,560,049...2,750,467 		JBrowse link
G Snx33 sorting nexin 33 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624894:545,411...557,347
Ensembl chrNW_004624894:544,791...557,563 		JBrowse link
G Snx9 sorting nexin 9 involved_in ISO (PMID:18353773) UniProt PMID:18353773 NCBI chrNW_004624785:283,886...374,740
Ensembl chrNW_004624785:282,512...374,378 		JBrowse link
G Tnf tumor necrosis factor involved_in ISO (PMID:18373975) BHF-UCL PMID:18373975 NCBI chrNW_004624754:24,623,059...24,625,647
Ensembl chrNW_004624754:24,623,425...24,625,531 		JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624818:894,470...922,806
Ensembl chrNW_004624818:896,150...922,710 		JBrowse link
positive regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag2 BAG cochaperone 2 involved_in ISO (PMID:19228967) ARUK-UCL PMID:19228967 NCBI chrNW_004624753:18,983,449...18,986,078 JBrowse link
G Dab2ip DAB2 interacting protein involved_in ISO (PMID:20080667) UniProt PMID:20080667 NCBI chrNW_004624760:13,472,500...13,658,070
Ensembl chrNW_004624760:13,472,672...13,657,930 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:23675531) UniProt PMID:23675531 NCBI chrNW_004624741:4,292,256...4,305,424
Ensembl chrNW_004624741:4,292,256...4,305,504 		JBrowse link
G Ecscr endothelial cell surface expressed chemotaxis and apoptosis regulator acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19416853) MGI
TreeGrafter		 PMID:19416853 GO_REF:0000118 NCBI chrNW_004624743:32,248,768...32,272,352
Ensembl chrNW_004624743:32,246,966...32,256,617 		JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in ISO (PMID:23858059) ParkinsonsUK-UCL PMID:23858059 NCBI chrNW_004624858:3,778,842...3,974,351
Ensembl chrNW_004624858:3,775,795...3,873,336 		JBrowse link
G Fmr1 Fragile X messenger ribonucleoprotein 1 involved_in ISO (PMID:24709664) UniProt PMID:24709664 NCBI chrNW_004624883:645,524...681,705
Ensembl chrNW_004624883:645,449...682,292 		JBrowse link
G Kcne2 potassium voltage-gated channel subfamily E regulatory subunit 2 involved_in ISO (PMID:22180649) BHF-UCL PMID:22180649 NCBI chrNW_004624745:22,552,809...22,553,321
Ensembl chrNW_004624745:22,525,037...22,556,000 		JBrowse link
G Neurl3 neuralized E3 ubiquitin protein ligase 3 involved_in ISO (PMID:38667302) UniProt PMID:38667302 NCBI chrNW_004624749:2,460,041...2,476,143
Ensembl chrNW_004624749:2,458,885...2,473,745 		JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISO (PMID:16300740) UniProt PMID:16300740 NCBI chrNW_004624782:13,042,938...13,044,298
Ensembl chrNW_004624782:13,042,939...13,044,267 		JBrowse link
G Oaz1 ornithine decarboxylase antizyme 1 ISO RGD PMID:12359729 RGD:7245486 NCBI chrNW_004624828:6,617,342...6,620,466
Ensembl chrNW_004624828:6,617,727...6,620,402 		JBrowse link
G Osbpl7 oxysterol binding protein like 7 involved_in ISO (PMID:21669198) BHF-UCL PMID:21669198 NCBI chrNW_004624795:4,468,767...4,479,654
Ensembl chrNW_004624795:4,469,551...4,479,798 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:23858059) ParkinsonsUK-UCL PMID:23858059 NCBI chrNW_004624855:430,148...1,992,121
Ensembl chrNW_004624855:430,260...1,989,747 		JBrowse link
G Psmc2 proteasome 26S subunit, ATPase 2 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004624739:26,001,871...26,015,633
Ensembl chrNW_004624739:26,001,871...26,016,040 		JBrowse link
G Rnf40 ring finger protein 40 ISO RGD PMID:12121982 RGD:633892 NCBI chrNW_004624782:13,884,737...13,896,496
Ensembl chrNW_004624782:13,884,830...13,896,500 		JBrowse link
G Tmtc3 transmembrane O-mannosyltransferase targeting cadherins 3 involved_in ISO (PMID:21603654) UniProt PMID:21603654 NCBI chrNW_004624837:7,139,006...7,205,077
Ensembl chrNW_004624837:7,138,419...7,190,194 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (PMID:29518356) ARUK-UCL PMID:29518356 NCBI chrNW_004624754:17,643,397...17,649,255
Ensembl chrNW_004624754:17,643,363...17,648,231 		JBrowse link
positive regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:15937334)
(PMID:23512198)		 MGI
UniProt		 PMID:15937334 PMID:23512198 NCBI chrNW_004624734:507,880...525,295
Ensembl chrNW_004624734:509,368...525,295 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO (PMID:23152632) MGI PMID:23152632 NCBI chrNW_004624943:231,978...480,933
Ensembl chrNW_004624943:232,618...481,290 		JBrowse link
G Aurka aurora kinase A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17060449) Ensembl
MGI		 PMID:17060449 GO_REF:0000107 NCBI chrNW_004624790:143,818...162,065
Ensembl chrNW_004624790:147,149...161,344 		JBrowse link
G Axin1 axin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16601693) Ensembl
TreeGrafter
MGI		 PMID:16601693 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624913:1,139,165...1,195,477
Ensembl chrNW_004624913:1,139,165...1,195,230 		JBrowse link
G Axin2 axin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624870:2,803,743...2,832,489
Ensembl chrNW_004624870:2,800,873...2,832,626 		JBrowse link
G Bag2 BAG cochaperone 2 NOT|involved_in ISO (PMID:19228967) ARUK-UCL PMID:19228967 NCBI chrNW_004624753:18,983,449...18,986,078 JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 acts_upstream_of_or_within ISO (PMID:22302990) MGI PMID:22302990 NCBI chrNW_004624777:2,105,122...2,151,399
Ensembl chrNW_004624777:2,104,765...2,151,402 		JBrowse link
G Cbfa2t3 CBFA2/RUNX1 partner transcriptional co-repressor 3 involved_in ISO (PMID:25974097) UniProt PMID:25974097 NCBI chrNW_004624746:716,848...773,169
Ensembl chrNW_004624746:716,836...773,169 		JBrowse link
G Chfr checkpoint with forkhead and ring finger domains acts_upstream_of_or_within ISO (PMID:22285184) MGI PMID:22285184 NCBI chrNW_004624747:28,187,356...28,222,041
Ensembl chrNW_004624747:28,188,419...28,221,525 		JBrowse link
G Clu clusterin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624758:22,431,331...22,444,185
Ensembl chrNW_004624758:22,426,918...22,444,357 		JBrowse link
G Cop1 COP1 E3 ubiquitin ligase involved_in ISO (PMID:19805145) UniProt PMID:19805145 NCBI chrNW_004624771:5,922,086...6,132,537
Ensembl chrNW_004624771:5,922,067...6,133,597 		JBrowse link
G Csnk1a1 casein kinase 1 alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624774:8,815,021...8,862,657
Ensembl chrNW_004624774:8,815,023...8,862,878 		JBrowse link
G Csnk1d casein kinase 1 delta involved_in ISO (PMID:19414593) UniProt PMID:19414593 NCBI chrNW_004624801:11,031,102...11,074,100
Ensembl chrNW_004624801:11,032,021...11,058,551 		JBrowse link
G Dab2 DAB adaptor protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:15,459,436...15,520,225
Ensembl chrNW_004624759:15,459,288...15,520,924 		JBrowse link
G Dda1 DET1 and DDB1 associated 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624908:631,429...637,158
Ensembl chrNW_004624908:631,432...637,104 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:23675531) ParkinsonsUK-UCL PMID:23675531 NCBI chrNW_004624741:4,292,256...4,305,424
Ensembl chrNW_004624741:4,292,256...4,305,504 		JBrowse link
G Det1 DET1 partner of COP1 E3 ubiquitin ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624768:15,869,949...15,919,368
Ensembl chrNW_004624768:15,870,035...15,884,201 		JBrowse link
G Dnajb2 DnaJ heat shock protein family (Hsp40) member B2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624823:5,730,553...5,737,668
Ensembl chrNW_004624823:5,730,386...5,738,459 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 involved_in ISO (PMID:20177058) BHF-UCL PMID:20177058 NCBI chrNW_004624818:8,267,111...8,283,755
Ensembl chrNW_004624818:8,267,128...8,278,725 		JBrowse link
G Fbxo22 F-box protein 22 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19319192) MGI
TreeGrafter		 PMID:19319192 GO_REF:0000118 NCBI chrNW_004624894:2,158,065...2,177,945
Ensembl chrNW_004624894:2,158,065...2,178,431 		JBrowse link
G Fbxw8 F-box and WD repeat domain containing 8 involved_in ISO (PMID:29153991) UniProt PMID:29153991 NCBI chrNW_004624747:16,226,025...16,343,839
Ensembl chrNW_004624747:16,233,312...16,343,824 		JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in ISO (PMID:25684205) UniProt PMID:25684205 NCBI chrNW_004624786:9,857,370...9,859,675
Ensembl chrNW_004624786:9,857,370...9,860,063 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) ParkinsonsUK-UCL PMID:23707074 NCBI chrNW_004624885:2,315,371...2,321,327
Ensembl chrNW_004624885:2,315,142...2,321,327 		JBrowse link
G Gclc glutamate-cysteine ligase catalytic subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17189825) Ensembl
MGI		 PMID:17189825 GO_REF:0000107 NCBI chrNW_004624850:749,046...793,654
Ensembl chrNW_004624850:749,050...793,959 		JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624907:511,919...522,106
Ensembl chrNW_004624907:511,889...522,168 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22660580) Ensembl
TreeGrafter
MGI		 PMID:22660580 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624731:28,178,647...28,368,784
Ensembl chrNW_004624731:28,178,628...28,366,420 		JBrowse link
G Hamp hepcidin antimicrobial peptide involved_in ISO (PMID:37277838) UniProt PMID:37277838 NCBI chrNW_004624794:8,257,760...8,259,243
Ensembl chrNW_004624794:8,257,760...8,259,264 		JBrowse link
G Hspbp1 HSPA (Hsp70) binding protein 1 involved_in ISO (PMID:16831871) BHF-UCL PMID:16831871 NCBI chrNW_004624832:1,997,748...2,009,683
Ensembl chrNW_004624832:1,998,005...2,009,683 		JBrowse link
G Il33 interleukin 33 acts_upstream_of_or_within ISO (PMID:22660580) MGI PMID:22660580 NCBI chrNW_004624736:10,733,944...10,786,188
Ensembl chrNW_004624736:10,764,486...10,784,864 		JBrowse link
G Klhl40 kelch like family member 40 involved_in ISO (PMID:25940086) UniProt PMID:25940086 NCBI chrNW_004624730:77,004,787...77,012,643
Ensembl chrNW_004624730:77,007,063...77,011,413 		JBrowse link
G LOC101719398 serotransferrin involved_in ISO (PMID:37277838) UniProt PMID:37277838 NCBI chrNW_004624730:10,078,165...10,109,349 JBrowse link
G Lrrk2 leucine rich repeat kinase 2 involved_in ISO (PMID:20457918) BHF-UCL PMID:20457918 NCBI chrNW_004624778:106,594...279,325
Ensembl chrNW_004624778:108,761...279,230 		JBrowse link
G Mapk8 mitogen-activated protein kinase 8 involved_in ISO (PMID:29153991) UniProt PMID:29153991 NCBI chrNW_004624928:1,442,216...1,494,275
Ensembl chrNW_004624928:1,439,146...1,494,266 		JBrowse link
G Mapk9 mitogen-activated protein kinase 9 involved_in ISO (PMID:29153991) UniProt PMID:29153991 NCBI chrNW_004624733:42,998,948...43,048,392
Ensembl chrNW_004624733:42,999,339...43,048,285 		JBrowse link
G Nkd2 NKD inhibitor of WNT signaling pathway 2 involved_in ISO (PMID:20177058) BHF-UCL PMID:20177058 NCBI chrNW_004624751:495,561...507,756 JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:25818168), (PMID:27323397)
(PMID:21804542)		 UniProt PMID:21804542 PMID:25818168 PMID:27323397 NCBI chrNW_004624832:6,144,260...6,154,172
Ensembl chrNW_004624832:6,145,749...6,154,411 		JBrowse link
G Nub1 negative regulator of ubiquitin like proteins 1 involved_in ISO (PMID:16707496) UniProt PMID:16707496 NCBI chrNW_004624800:5,314,203...5,345,301
Ensembl chrNW_004624800:5,315,381...5,345,801 		JBrowse link
G Pabir1 PP2A Aalpha (PPP2R1A) and B55A (PPP2R2A) interacting phosphatase regulator 1 involved_in ISO (PMID:27588481) UniProt PMID:27588481 NCBI chrNW_004624736:4,333,707...4,341,205
Ensembl chrNW_004624736:4,340,195...4,341,058 		JBrowse link
G Paqr3 progestin and adipoQ receptor family member 3 involved_in ISO (PMID:29331071), (PMID:35710596) UniProt PMID:29331071 PMID:35710596 NCBI chrNW_004624757:12,140,041...12,303,568
Ensembl chrNW_004624757:12,138,681...12,159,661 		JBrowse link
G Pias1 protein inhibitor of activated STAT 1 involved_in ISO (PMID:22406621) UniProt PMID:22406621 NCBI chrNW_004624781:4,893,308...5,046,928
Ensembl chrNW_004624781:4,893,308...5,046,582 		JBrowse link
G Plk1 polo like kinase 1 involved_in ISO (PMID:19473992) UniProt PMID:19473992 NCBI chrNW_004624782:8,811,593...8,823,060
Ensembl chrNW_004624782:8,811,616...8,826,749 		JBrowse link
G Plk2 polo like kinase 2 ISO RGD PMID:18723513 RGD:7241135 NCBI chrNW_004624759:811,320...817,401
Ensembl chrNW_004624759:811,316...817,474 		JBrowse link
G Plk3 polo like kinase 3 involved_in ISO (PMID:20889502) UniProt PMID:20889502 NCBI chrNW_004624906:678,517...693,644
Ensembl chrNW_004624906:688,707...693,326 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO (PMID:17030191) BHF-UCL PMID:17030191 NCBI chrNW_004624816:10,087,866...10,185,004
Ensembl chrNW_004624816:10,164,666...10,184,994 		JBrowse link
G Psen1 presenilin 1 involved_in ISO (PMID:20208556) BHF-UCL PMID:20208556 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743 		JBrowse link
G Psen2 presenilin 2 involved_in ISO (PMID:20208556) BHF-UCL PMID:20208556 NCBI chrNW_004624771:17,183,538...17,205,460
Ensembl chrNW_004624771:17,183,447...17,224,188 		JBrowse link
G Psmd10 proteasome 26S subunit, non-ATPase 10 involved_in ISO (PMID:16023600) UniProt PMID:16023600 NCBI chrNW_004624803:8,407,462...8,420,316 JBrowse link
G Rack1 receptor for activated C kinase 1 involved_in ISO (PMID:19785988) UniProt PMID:19785988 NCBI chrNW_004624958:181,325...185,620
Ensembl chrNW_004624958:181,273...185,620 		JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein involved_in ISO (PMID:26296656) CAFA PMID:26296656 NCBI chrNW_004624901:515,761...522,845
Ensembl chrNW_004624901:516,855...523,337 		JBrowse link
G Rbx1 ring-box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624752:7,547,702...7,560,605
Ensembl chrNW_004624752:7,546,959...7,560,668 		JBrowse link
G Rchy1 ring finger and CHY zinc finger domain containing 1 involved_in ISO (PMID:19483087) UniProt PMID:19483087 NCBI chrNW_004624730:322,448...342,454 JBrowse link
G Rnf180 ring finger protein 180 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18363970), (PMID:23926250) MGI
TreeGrafter		 PMID:18363970 PMID:23926250 GO_REF:0000118 NCBI chrNW_004624815:5,433,057...5,621,833
Ensembl chrNW_004624815:5,432,991...5,622,914 		JBrowse link
G Sh3rf2 SH3 domain containing ring finger 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624774:5,319,329...5,554,823
Ensembl chrNW_004624774:5,327,570...5,555,645 		JBrowse link
G Sirt1 sirtuin 1 involved_in ISO (PMID:20203304) AgBase PMID:20203304 NCBI chrNW_004624754:2,304,476...2,332,705
Ensembl chrNW_004624754:2,304,634...2,330,946 		JBrowse link
G Sirt2 sirtuin 2 involved_in ISO (PMID:24681946) UniProt PMID:24681946 NCBI chrNW_004624794:12,239,363...12,259,561
Ensembl chrNW_004624794:12,235,263...12,259,276 		JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (PMID:27457971) CACAO PMID:27457971 NCBI chrNW_004624828:5,441,973...5,449,549
Ensembl chrNW_004624828:5,442,057...5,451,520 		JBrowse link
G Socs5 suppressor of cytokine signaling 5 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004624738:28,150,004...28,217,850
Ensembl chrNW_004624738:28,150,664...28,216,389 		JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in ISO (PMID:11146632) HGNC-UCL PMID:11146632 NCBI chrNW_004624913:1,491,873...1,494,249
Ensembl chrNW_004624913:1,491,991...1,494,249 		JBrowse link
G Sumo1 small ubiquitin like modifier 1 involved_in ISO (PMID:18408734) UniProt PMID:18408734 NCBI chrNW_004624765:14,205,071...14,229,864
Ensembl chrNW_004624765:14,205,051...14,229,864 		JBrowse link
G Sumo2 small ubiquitin like modifier 2 involved_in ISO (PMID:18408734) UniProt PMID:18408734 NCBI chrNW_004624801:4,998,271...5,009,492 JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:15053879) BHF-UCL PMID:15053879 NCBI chrNW_004624903:1,698,201...1,774,607 JBrowse link
G Trib1 tribbles pseudokinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624735:29,880,732...29,888,117
Ensembl chrNW_004624735:29,879,310...29,888,305 		JBrowse link
G Trib2 tribbles pseudokinase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624865:3,477,831...3,503,783
Ensembl chrNW_004624865:3,475,141...3,503,783 		JBrowse link
G Trib3 tribbles pseudokinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624741:1,486,223...1,494,005
Ensembl chrNW_004624741:1,484,863...1,494,829 		JBrowse link
G Ube2v2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chrNW_004624735:7,431,955...7,464,698
Ensembl chrNW_004624735:7,432,078...7,464,672 		JBrowse link
G Usp5 ubiquitin specific peptidase 5 involved_in ISO (PMID:19098288) UniProt PMID:19098288 NCBI chrNW_004624860:3,519,106...3,532,690
Ensembl chrNW_004624860:3,519,113...3,532,687 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624915:253,240...270,440
Ensembl chrNW_004624915:253,240...270,501 		JBrowse link
G Zer1 zyg-11 related cell cycle regulator involved_in ISO (PMID:31273098) UniProt PMID:31273098 NCBI chrNW_004624760:6,247,016...6,270,621
Ensembl chrNW_004624760:6,247,052...6,270,621 		JBrowse link
G Zfand2a zinc finger AN1-type containing 2A acts_upstream_of_or_within ISO (PMID:16973439) MGI PMID:16973439 NCBI chrNW_004624740:26,730,499...26,741,426
Ensembl chrNW_004624740:26,727,557...26,741,411 		JBrowse link
G Zyg11b zyg-11 family member B, cell cycle regulator involved_in ISO (PMID:31273098) UniProt PMID:31273098 NCBI chrNW_004624859:359,309...453,395
Ensembl chrNW_004624859:364,268...454,038 		JBrowse link
positive regulation of protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amer1 APC membrane recruitment protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624898:2,704,322...2,731,918
Ensembl chrNW_004624898:2,724,042...2,727,419 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (PMID:12952940)
(PMID:16478791)		 MGI PMID:12952940 PMID:16478791 NCBI chrNW_004624743:30,517,034...30,635,740
Ensembl chrNW_004624743:30,546,323...30,635,737 		JBrowse link
G Asb11 ankyrin repeat and SOCS box containing 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624829:104,065...122,955
Ensembl chrNW_004624829:103,969...123,033 		JBrowse link
G Asb12 ankyrin repeat and SOCS box containing 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624898:2,686,067...2,692,631
Ensembl chrNW_004624898:2,685,887...2,693,086 		JBrowse link
G Asb13 ankyrin repeat and SOCS box containing 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624775:497,711...514,963
Ensembl chrNW_004624775:499,426...514,934 		JBrowse link
G Asb5 ankyrin repeat and SOCS box containing 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624769:7,244,995...7,317,038
Ensembl chrNW_004624769:7,242,382...7,311,303 		JBrowse link
G Asb9 ankyrin repeat and SOCS box containing 9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17148442) MGI
TreeGrafter
Ensembl		 PMID:17148442 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624829:63,524...86,042
Ensembl chrNW_004624829:63,605...78,016 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase ISO RGD PMID:16874114 RGD:2301238 NCBI chrNW_004624847:5,605,818...5,629,729
Ensembl chrNW_004624847:5,605,844...5,629,891 		JBrowse link
G Atg7 autophagy related 7 involved_in ISO (PMID:20543840) UniProt PMID:20543840 NCBI chrNW_004624943:231,978...480,933
Ensembl chrNW_004624943:232,618...481,290 		JBrowse link
G Axin1 axin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624913:1,139,165...1,195,477
Ensembl chrNW_004624913:1,139,165...1,195,230 		JBrowse link
G C4bpb complement component 4 binding protein beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624807:4,407,008...4,416,313
Ensembl chrNW_004624807:4,406,766...4,415,248 		JBrowse link
G Cblb Cbl proto-oncogene B acts_upstream_of_or_within ISO (PMID:14973438) MGI PMID:14973438 NCBI chrNW_004624731:43,803,743...44,018,682
Ensembl chrNW_004624731:43,803,768...44,015,870 		JBrowse link
G Cdkn1b cyclin dependent kinase inhibitor 1B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19056892) MGI
Ensembl		 PMID:19056892 GO_REF:0000107 NCBI chrNW_004624752:25,202,474...25,207,107
Ensembl chrNW_004624752:25,203,474...25,207,114 		JBrowse link
G Crebrf CREB3 regulatory factor involved_in ISO (PMID:18391022) UniProt PMID:18391022 NCBI chrNW_004624733:16,952,319...17,017,396 JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISO (PMID:20625391) UniProt PMID:20625391 NCBI chrNW_004624741:1,566,380...1,635,365 JBrowse link
G Cul4a cullin 4A involved_in ISO (PMID:11027288), (PMID:20870715) UniProt PMID:11027288 PMID:20870715 NCBI chrNW_004624793:686,720...722,516
Ensembl chrNW_004624793:688,135...722,490 		JBrowse link
G Cul4b cullin 4B acts_upstream_of_or_within ISO (PMID:18602923) MGI PMID:18602923 NCBI chrNW_004624931:431,835...568,609 JBrowse link
G Dab2ip DAB2 interacting protein involved_in ISO (PMID:19948740) UniProt PMID:19948740 NCBI chrNW_004624760:13,472,500...13,658,070
Ensembl chrNW_004624760:13,472,672...13,657,930 		JBrowse link
G Dact1 dishevelled binding antagonist of beta catenin 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:16446366)
(PMID:18936100)		 MGI
ParkinsonsUK-UCL		 PMID:16446366 PMID:18936100 NCBI chrNW_004624884:3,733,648...3,750,207
Ensembl chrNW_004624884:3,739,334...3,948,621 		JBrowse link
G Dcaf1 DDB1 and CUL4 associated factor 1 involved_in ISO (PMID:23063525) UniProt PMID:23063525 NCBI chrNW_004624730:5,176,828...5,245,548
Ensembl chrNW_004624730:5,176,828...5,240,680 		JBrowse link
G Ddb1 damage specific DNA binding protein 1 involved_in ISO (PMID:14739464), (PMID:16949367)
(PMID:16949367)		 UniProt PMID:14739464 PMID:16949367 NCBI chrNW_004624926:871,003...893,902
Ensembl chrNW_004624926:871,000...897,777 		JBrowse link
G Dtl denticleless E3 ubiquitin protein ligase homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624771:17,612,264...17,660,772
Ensembl chrNW_004624771:17,612,284...17,662,405 		JBrowse link
G Egln2 egl-9 family hypoxia inducible factor 2 involved_in ISO (PMID:11595184) UniProt PMID:11595184 NCBI chrNW_004624925:708,920...716,084
Ensembl chrNW_004624925:707,583...716,456 		JBrowse link
G Ezr ezrin involved_in ISO (PMID:21148287) UniProt PMID:21148287 NCBI chrNW_004624929:827,275...873,743
Ensembl chrNW_004624929:826,531...873,572 		JBrowse link
G Faf1 Fas associated factor 1 involved_in ISO (PMID:26842564) UniProt PMID:26842564 NCBI chrNW_004624859:2,105,840...2,628,074
Ensembl chrNW_004624859:2,105,884...2,630,090 		JBrowse link
G Fbxl5 F-box and leucine rich repeat protein 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21907140) Ensembl
MGI		 PMID:21907140 GO_REF:0000107 NCBI chrNW_004624755:16,197,223...16,245,108
Ensembl chrNW_004624755:16,197,242...16,245,653 		JBrowse link
G Fbxo11 F-box protein 11 ISO RGD PMID:32988261 RGD:152176655 NCBI chrNW_004624738:29,108,759...29,190,725
Ensembl chrNW_004624738:29,108,809...29,191,368 		JBrowse link
G Foxo1 forkhead box O1 involved_in ISO (PMID:20543840) UniProt PMID:20543840 NCBI chrNW_004624748:1,413,754...1,529,646
Ensembl chrNW_004624748:1,413,983...1,529,992 		JBrowse link
G Gga1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 acts_upstream_of_or_within ISO (PMID:22836275) MGI PMID:22836275 NCBI chrNW_004624752:10,267,501...10,289,093
Ensembl chrNW_004624752:10,270,241...10,289,129 		JBrowse link
G Gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 acts_upstream_of_or_within ISO (PMID:22836275) MGI PMID:22836275 NCBI chrNW_004624801:5,057,611...5,073,276
Ensembl chrNW_004624801:5,059,126...5,073,157 		JBrowse link
G Gja1 gap junction protein alpha 1 ISO RGD PMID:12952975 RGD:1582696 NCBI chrNW_004624798:9,358,996...9,364,413
Ensembl chrNW_004624798:9,359,004...9,364,313 		JBrowse link
G Gpc3 glypican 3 acts_upstream_of_or_within ISO (PMID:18477453) MGI PMID:18477453 NCBI chrNW_004624797:13,234,741...13,678,542
Ensembl chrNW_004624797:13,230,932...13,678,742 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO RGD PMID:17686886 RGD:10045647 NCBI chrNW_004624731:28,178,647...28,368,784
Ensembl chrNW_004624731:28,178,628...28,366,420 		JBrowse link
G Hamp hepcidin antimicrobial peptide acts_upstream_of_or_within ISO (PMID:21700773) MGI PMID:21700773 NCBI chrNW_004624794:8,257,760...8,259,243
Ensembl chrNW_004624794:8,257,760...8,259,264 		JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 involved_in ISO (PMID:18292230) ARUK-UCL PMID:18292230 NCBI chrNW_004624734:2,233,932...2,239,687
Ensembl chrNW_004624734:2,233,547...2,241,436 		JBrowse link
G Ier3 immediate early response 3 acts_upstream_of_or_within ISO (PMID:19096392) MGI PMID:19096392 NCBI chrNW_004624754:24,991,650...24,992,645
Ensembl chrNW_004624754:24,991,690...24,992,643 		JBrowse link
G Itch itchy E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (PMID:14973438) MGI PMID:14973438 NCBI chrNW_004624842:4,840,848...4,977,785
Ensembl chrNW_004624842:4,842,419...4,935,699 		JBrowse link
G Lpcat1 lysophosphatidylcholine acyltransferase 1 acts_upstream_of_or_within ISO (PMID:20018880) MGI PMID:20018880 NCBI chrNW_004624751:732,364...764,421
Ensembl chrNW_004624751:730,472...764,430 		JBrowse link
G Mapk15 mitogen-activated protein kinase 15 ISO Human Estrogen Receptor alpha RGD PMID:12917323 RGD:2304230 NCBI chrNW_004624735:13,049,509...13,077,509
Ensembl chrNW_004624735:13,047,125...13,056,308 		JBrowse link
G Msn moesin involved_in ISO (PMID:21148287) UniProt PMID:21148287 NCBI chrNW_004624898:1,525,795...1,601,402
Ensembl chrNW_004624898:1,525,388...1,601,539 		JBrowse link
G Mylip myosin regulatory light chain interacting protein involved_in ISO (PMID:19520913) BHF-UCL PMID:19520913 NCBI chrNW_004624756:10,324,275...10,343,047
Ensembl chrNW_004624756:10,324,021...10,343,787 		JBrowse link
G Ndfip1 Nedd4 family interacting protein 1 acts_upstream_of_or_within ISO (PMID:17137798) MGI PMID:17137798 NCBI chrNW_004624774:1,245,587...1,353,253
Ensembl chrNW_004624774:1,303,773...1,353,253 		JBrowse link
G Ndufa13 NADH:ubiquinone oxidoreductase subunit A13 involved_in ISO (PMID:17297443) ParkinsonsUK-UCL PMID:17297443 NCBI chrNW_004624908:2,311,801...2,319,604
Ensembl chrNW_004624908:2,312,452...2,319,604 		JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (PMID:14973438)
(PMID:11748237)		 MGI PMID:11748237 PMID:14973438 NCBI chrNW_004624731:5,855,678...5,954,119
Ensembl chrNW_004624731:5,862,626...5,951,421 		JBrowse link
G Nedd4l NEDD4 like E3 ubiquitin protein ligase ISO RGD PMID:18174164 RGD:6893331 NCBI chrNW_004624792:3,553,185...3,903,288
Ensembl chrNW_004624792:3,553,004...3,902,468 		JBrowse link
G Nkd1 NKD inhibitor of WNT signaling pathway 1 involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004624757:6,035,356...6,134,477
Ensembl chrNW_004624757:6,046,361...6,134,470 		JBrowse link
G Nsf N-ethylmaleimide sensitive factor, vesicle fusing ATPase involved_in ISO (PMID:22045810) CACAO PMID:22045810 NCBI chrNW_004624849:2,711,426...2,865,569
Ensembl chrNW_004624849:2,732,792...2,865,569 		JBrowse link
G Oaz1 ornithine decarboxylase antizyme 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:6,617,342...6,620,466
Ensembl chrNW_004624828:6,617,727...6,620,402 		JBrowse link
G Oaz2 ornithine decarboxylase antizyme 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624781:7,891,104...7,904,720
Ensembl chrNW_004624781:7,891,315...7,903,607 		JBrowse link
G Oaz3 ornithine decarboxylase antizyme 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624772:19,438,742...19,445,293
Ensembl chrNW_004624772:19,442,015...19,445,182 		JBrowse link
G Plk2 polo like kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:811,320...817,401
Ensembl chrNW_004624759:811,316...817,474 		JBrowse link
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004624730:12,384,691...12,568,115
Ensembl chrNW_004624730:12,429,902...12,567,683 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:22072966) CACAO PMID:22072966 NCBI chrNW_004625042:56,509...112,519
Ensembl chrNW_004625042:56,517...112,612 		JBrowse link
G Rbx1 ring-box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624752:7,547,702...7,560,605
Ensembl chrNW_004624752:7,546,959...7,560,668 		JBrowse link
G Rdx radixin involved_in ISO (PMID:21148287) UniProt PMID:21148287 NCBI chrNW_004624784:5,198,433...5,304,953
Ensembl chrNW_004624784:5,221,045...5,271,045 		JBrowse link
G Rhbdd1 rhomboid domain containing 1 involved_in ISO (PMID:18953687)
(PMID:22624035)		 UniProt PMID:18953687 PMID:22624035 NCBI chrNW_004624843:1,217,655...1,362,406
Ensembl chrNW_004624843:1,219,808...1,360,135 		JBrowse link
G Rhbdd3 rhomboid domain containing 3 acts_upstream_of_or_within ISO (PMID:23610400) MGI PMID:23610400 NCBI chrNW_004624747:5,641,702...5,647,808
Ensembl chrNW_004624747:5,641,855...5,647,122 		JBrowse link
G Rilp Rab interacting lysosomal protein involved_in ISO (PMID:17959629) UniProt PMID:17959629 NCBI chrNW_004624786:4,352,391...4,355,905
Ensembl chrNW_004624786:4,352,772...4,355,613 		JBrowse link
G Rnf41 ring finger protein 41 involved_in ISO (PMID:27353365) CAFA PMID:27353365 NCBI chrNW_004624802:11,781,748...11,811,412
Ensembl chrNW_004624802:11,781,725...11,810,402 		JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in ISO (PMID:21242315) UniProt PMID:21242315 NCBI chrNW_004624772:15,800,793...15,833,453
Ensembl chrNW_004624772:15,803,369...15,833,968 		JBrowse link
G Sgsm3 small G protein signaling modulator 3 involved_in ISO (PMID:15709751) UniProt PMID:15709751 NCBI chrNW_004624752:8,050,345...8,093,119
Ensembl chrNW_004624752:8,050,342...8,093,105 		JBrowse link
G Snf8 SNF8 subunit of ESCRT-II involved_in ISO (PMID:17959629) UniProt PMID:17959629 NCBI chrNW_004624795:5,318,803...5,328,542
Ensembl chrNW_004624795:5,318,802...5,328,768 		JBrowse link
G Snx1 sorting nexin 1 ISO RGD PMID:11110793 RGD:68866 NCBI chrNW_004624781:8,425,878...8,467,660
Ensembl chrNW_004624781:8,425,971...8,468,305 		JBrowse link
G Sorl1 sortilin related receptor 1 involved_in ISO (PMID:24523320) Alzheimers_University_of_Toronto PMID:24523320 NCBI chrNW_004624880:3,579,783...3,749,958
Ensembl chrNW_004624880:3,583,838...3,749,930 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO (PMID:20802155) UniProt PMID:20802155 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:19047045) MGI PMID:19047045 NCBI chrNW_004624801:2,296,353...2,300,853
Ensembl chrNW_004624801:2,296,168...2,301,596 		JBrowse link
G Stx5 syntaxin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624926:1,270,624...1,286,439
Ensembl chrNW_004624926:1,270,624...1,286,060 		JBrowse link
G Tiparp TCDD inducible poly(ADP-ribose) polymerase acts_upstream_of_or_within ISO (PMID:23275542) MGI PMID:23275542 NCBI chrNW_004624730:34,262,630...34,293,034
Ensembl chrNW_004624730:34,262,468...34,293,087 		JBrowse link
G Tnf tumor necrosis factor involved_in ISO (PMID:18632959) AgBase PMID:18632959 NCBI chrNW_004624754:24,623,059...24,625,647
Ensembl chrNW_004624754:24,623,425...24,625,531 		JBrowse link
G Tnfsf12 TNF superfamily member 12 acts_upstream_of_or_within ISO (PMID:17389268) MGI PMID:17389268 NCBI chrNW_004624786:10,165,694...10,176,042
Ensembl chrNW_004624786:10,166,168...10,175,433 		JBrowse link
G Trim32 tripartite motif containing 32 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16243356) MGI
Ensembl		 PMID:16243356 GO_REF:0000107 NCBI chrNW_004624760:18,577,764...18,600,869
Ensembl chrNW_004624760:18,585,279...18,599,659 		JBrowse link
G Ubr3 ubiquitin protein ligase E3 component n-recognin 3 ISO RGD PMID:32988261 RGD:152176655 NCBI chrNW_004624787:7,358,426...7,610,872
Ensembl chrNW_004624787:7,358,441...7,608,483 		JBrowse link
G Ubxn2a UBX domain protein 2A involved_in ISO (PMID:37037900) UniProt PMID:37037900 NCBI chrNW_004624738:6,313,925...6,341,999
Ensembl chrNW_004624738:6,323,404...6,341,996 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624915:253,240...270,440
Ensembl chrNW_004624915:253,240...270,501 		JBrowse link
G Vgll4 vestigial like family member 4 involved_in ISO (PMID:27720608) UniProt PMID:27720608 NCBI chrNW_004624943:113,215...232,216 JBrowse link
G Vip vasoactive intestinal peptide involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624785:5,466,429...5,487,763
Ensembl chrNW_004624785:5,468,563...5,488,143 		JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:21148287) UniProt PMID:21148287 NCBI chrNW_004624784:14,452,811...14,464,965
Ensembl chrNW_004624784:14,452,817...14,464,965 		JBrowse link
G Vps28 VPS28 subunit of ESCRT-I involved_in ISO (PMID:11916981) UniProt PMID:11916981 NCBI chrNW_004624735:12,426,687...12,430,698
Ensembl chrNW_004624735:12,426,543...12,430,698 		JBrowse link
G Vps35 VPS35 retromer complex component involved_in ISO (PMID:25533483) ParkinsonsUK-UCL PMID:25533483 NCBI chrNW_004624914:160,483...188,534
Ensembl chrNW_004624914:160,483...188,490 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:12952940) MGI PMID:12952940 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288 		JBrowse link
positive regulation of protein catabolic process in the vacuole term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd81 CD81 molecule involved_in ISO (PMID:25635054) BHF-UCL PMID:25635054 NCBI chrNW_004624767:15,192,446...15,210,923
Ensembl chrNW_004624767:15,192,452...15,210,922 		JBrowse link
positive regulation of proteolysis involved in protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position