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ONTOLOGY REPORT - ANNOTATIONS


Term:protein catabolic process
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Accession:GO:0030163 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
Comment:This term refers to the breakdown of mature proteins. For cleavage events involved in generating a mature protein from a precursor, consider instead the term 'protein maturation ; GO:0051604' and its children.
Synonyms:exact_synonym: cellular protein breakdown;   cellular protein catabolic process;   cellular protein catabolism;   cellular protein degradation;   protein breakdown;   protein catabolism;   protein degradation
 narrow_synonym: multicellular organismal protein catabolic process
 related_synonym: pheromone catabolic process;   pheromone catabolism
 alt_id: GO:0044254;   GO:0044257
 xref: Wikipedia:Protein_catabolism


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protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acr acrosin ISO RGD PMID:28859281 RGD:13464336 NCBI chrNW_004955413:33,721,984...33,728,088 JBrowse link
G Adamts13 ADAM metallopeptidase with thrombospondin type 1 motif 13 ISO RGD PMID:19652891 RGD:2315953 NCBI chrNW_004955513:2,761,386...2,786,447
Ensembl chrNW_004955513:2,764,186...2,786,187
JBrowse link
G Afg3l2 AFG3 like matrix AAA peptidase subunit 2 involved_in ISO (PMID:37917749), (PMID:38157846) UniProt PMID:37917749 PMID:38157846 NCBI chrNW_004955402:1,037,414...1,069,165
Ensembl chrNW_004955402:1,037,402...1,069,165
JBrowse link
G Akt1 AKT serine/threonine kinase 1 acts_upstream_of_or_within ISO (PMID:12145204) MGI PMID:12145204 NCBI chrNW_004955538:3,208,711...3,224,386
Ensembl chrNW_004955538:3,208,710...3,229,904
JBrowse link
G Ambp alpha-1-microglobulin/bikunin precursor ISO RGD PMID:11307954 RGD:6904220 NCBI chrNW_004955419:13,478,904...13,492,329
Ensembl chrNW_004955419:13,478,552...13,492,327
JBrowse link
G Ankrd11 ankyrin repeat domain containing 11 acts_upstream_of_or_within ISO (PMID:25413698) MGI PMID:25413698 NCBI chrNW_004955541:2,921,230...3,033,612
Ensembl chrNW_004955541:2,919,631...2,961,445
JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of ISO (PMID:16478791) MGI PMID:16478791 NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Ark2c arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C acts_upstream_of_or_within ISO (PMID:23610558) MGI PMID:23610558 NCBI chrNW_004955402:31,867,651...31,975,930
Ensembl chrNW_004955402:31,867,645...31,969,804
JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO (PMID:15866887) MGI PMID:15866887 NCBI chrNW_004955429:14,076,976...14,301,034
Ensembl chrNW_004955429:14,076,960...14,304,236
JBrowse link
G Axin1 axin 1 acts_upstream_of_or_within ISO (PMID:12717450) MGI PMID:12717450 NCBI chrNW_004955442:16,845,728...16,898,301
Ensembl chrNW_004955442:16,843,152...16,898,430
JBrowse link
G Bcas2 BCAS2 pre-mRNA processing factor acts_upstream_of_or_within ISO (PMID:34972250) MGI PMID:34972250 NCBI chrNW_004955435:17,830,532...17,857,360
Ensembl chrNW_004955435:17,846,466...17,857,356
JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (PMID:12843402) MGI PMID:12843402 NCBI chrNW_004955485:8,724,375...8,846,647
Ensembl chrNW_004955485:8,724,380...8,837,741
JBrowse link
G Capn1 calpain 1 ISO RGD PMID:11893336 PMID:17429681 RGD:1626249 RGD:70442 NCBI chrNW_004955422:20,006,448...20,026,984
Ensembl chrNW_004955422:20,004,426...20,025,708
JBrowse link
G Capn10 calpain 10 ISO RGD PMID:16790502 RGD:1625051 NCBI chrNW_004955542:874,083...885,085
Ensembl chrNW_004955542:874,083...885,084
JBrowse link
G Capn2 calpain 2 ISO RGD PMID:17402852 PMID:17429681 RGD:1626249 RGD:2303056 NCBI chrNW_004955520:1,287,829...1,315,318
Ensembl chrNW_004955520:1,286,356...1,315,328
JBrowse link
G Capn3 calpain 3 involved_in ISO (PMID:23357851)
(PMID:27657329)
UniProt PMID:23357851 PMID:27657329 NCBI chrNW_004955416:9,070,479...9,121,099
Ensembl chrNW_004955416:9,070,399...9,117,794
JBrowse link
G Capns1 calpain small subunit 1 ISO RGD PMID:7982961 RGD:634695 NCBI chrNW_004955468:2,446,631...2,454,369
Ensembl chrNW_004955468:2,447,111...2,452,982
JBrowse link
G Casp3 caspase 3 involved_in ISO (PMID:16374543) RGD
UniProt
PMID:15004018 PMID:16374543 PMID:18316105 RGD:1581919 RGD:2311460 NCBI chrNW_004955403:24,315,712...24,326,271 JBrowse link
G Casp7 caspase 7 involved_in ISO (PMID:16374543), (PMID:22184066), (PMID:22464733) RGD
UniProt
PMID:16374543 PMID:18316105 PMID:22184066 PMID:22464733 RGD:2311460 NCBI chrNW_004955431:18,685,408...18,723,221
Ensembl chrNW_004955431:18,686,190...18,723,524
JBrowse link
G Cast calpastatin acts_upstream_of_or_within ISO (PMID:11673859) MGI PMID:11673859 NCBI chrNW_004955418:15,859,951...15,974,141
Ensembl chrNW_004955418:15,862,729...15,916,169
JBrowse link
G Cblb Cbl proto-oncogene B acts_upstream_of ISO (PMID:14973438) MGI PMID:14973438 NCBI chrNW_004955427:6,601,651...6,812,896
Ensembl chrNW_004955427:6,604,820...6,812,882
JBrowse link
G Cblc Cbl proto-oncogene C acts_upstream_of_or_within ISO (PMID:18753381) MGI PMID:18753381 NCBI chrNW_004955555:1,921,896...1,941,247
Ensembl chrNW_004955555:1,921,912...1,935,096
JBrowse link
G Cd2ap CD2 associated protein acts_upstream_of_or_within ISO (PMID:14512504)
(PMID:18753381)
MGI PMID:14512504 PMID:18753381 NCBI chrNW_004955437:12,005,399...12,087,014
Ensembl chrNW_004955437:11,983,311...12,091,100
JBrowse link
G Chek2 checkpoint kinase 2 involved_in ISO (PMID:11298456) UniProt PMID:11298456 NCBI chrNW_004955455:2,969,113...3,008,004
Ensembl chrNW_004955455:2,969,270...3,003,173
JBrowse link
G Cln8 CLN8 transmembrane ER and ERGIC protein acts_upstream_of_or_within ISO (PMID:8389815) MGI PMID:8389815 NCBI chrNW_004955403:57,926,711...57,938,698
Ensembl chrNW_004955403:57,924,873...57,938,690
JBrowse link
G Cpb2 carboxypeptidase B2 ISO RGD PMID:11021404 RGD:625371 NCBI chrNW_004955518:3,740,348...3,803,540
Ensembl chrNW_004955518:3,740,348...3,803,539
JBrowse link
G Cpn1 carboxypeptidase N subunit 1 ISO RGD PMID:11021404 RGD:625371 NCBI chrNW_004955507:5,926,508...5,952,515
Ensembl chrNW_004955507:5,926,508...5,952,559
JBrowse link
G Ctsb cathepsin B ISO RGD PMID:8702598 PMID:8717430 PMID:11687729 PMID:11788364 RGD:1600623 RGD:1625498 RGD:1625507 RGD:631244 NCBI chrNW_004955403:53,086,236...53,100,217
Ensembl chrNW_004955403:53,085,574...53,093,809
JBrowse link
G Ctsd cathepsin D ISO RGD PMID:12666874 RGD:1299317 NCBI chrNW_004955422:13,576,315...13,584,267
Ensembl chrNW_004955422:13,576,202...13,584,298
JBrowse link
G Cul2 cullin 2 acts_upstream_of_or_within ISO (PMID:15601820) MGI PMID:15601820 NCBI chrNW_004955462:2,580,117...2,659,849
Ensembl chrNW_004955462:2,580,117...2,661,561
JBrowse link
G Cul3 cullin 3 involved_in ISO (PMID:25250572) MGI PMID:25250572 NCBI chrNW_004955453:9,546,554...9,629,976
Ensembl chrNW_004955453:9,564,522...9,629,976
JBrowse link
G Dab2ip DAB2 interacting protein involved_in ISO (PMID:17389591) UniProt PMID:17389591 NCBI chrNW_004955419:6,229,437...6,416,619
Ensembl chrNW_004955419:6,228,591...6,416,402
JBrowse link
G Dennd3 DENN domain containing 3 involved_in ISO (PMID:21718402) UniProt PMID:21718402 NCBI chrNW_004955454:185,299...253,935
Ensembl chrNW_004955454:185,299...253,428
JBrowse link
G Dpp3 dipeptidyl peptidase 3 ISO RGD PMID:10387075 RGD:728455 NCBI chrNW_004955422:18,844,391...18,865,050
Ensembl chrNW_004955422:18,844,138...18,865,050
JBrowse link
G Dpp4 dipeptidyl peptidase 4 ISO RGD PMID:17415460 RGD:1626457 NCBI chrNW_004955449:11,795,994...11,873,408
Ensembl chrNW_004955449:11,795,536...11,875,412
JBrowse link
G Dpp7 dipeptidyl peptidase 7 ISO RGD PMID:11173530 RGD:70800 NCBI chrNW_004955513:5,105,833...5,109,676
Ensembl chrNW_004955513:5,106,430...5,109,483
JBrowse link
G Dysf dysferlin acts_upstream_of ISO (PMID:20724702) MGI PMID:20724702 NCBI chrNW_004955424:13,756,130...13,970,437
Ensembl chrNW_004955424:13,756,130...13,970,436
JBrowse link
G Epg5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within ISO (PMID:31628468) MGI PMID:31628468 NCBI chrNW_004955402:31,422,848...31,532,189
Ensembl chrNW_004955402:31,422,848...31,532,289
JBrowse link
G Erap1 endoplasmic reticulum aminopeptidase 1 ISO RGD PMID:10824104 RGD:1299521 NCBI chrNW_004955418:15,827,560...15,859,720
Ensembl chrNW_004955418:15,830,371...15,859,720
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:22556407) MGI PMID:22556407 NCBI chrNW_004955417:23,798,044...24,067,759
Ensembl chrNW_004955417:23,798,393...24,067,100
JBrowse link
G Fbxl5 F-box and leucine rich repeat protein 5 acts_upstream_of ISO (PMID:21907140) MGI PMID:21907140 NCBI chrNW_004955480:8,360,957...8,397,903
Ensembl chrNW_004955480:8,344,019...8,398,650
JBrowse link
G Fbxo24 F-box protein 24 acts_upstream_of_or_within ISO (PMID:38470475) MGI PMID:38470475 NCBI chrNW_004955573:305,516...313,107
Ensembl chrNW_004955573:304,231...314,195
JBrowse link
G Fbxo43 F-box protein 43 acts_upstream_of ISO (PMID:16966421) MGI PMID:16966421 NCBI chrNW_004955417:15,394,481...15,406,751
Ensembl chrNW_004955417:15,390,969...15,406,751
JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase acts_upstream_of ISO (PMID:16841086) MGI PMID:16841086 NCBI chrNW_004955411:36,403,156...36,597,660
Ensembl chrNW_004955411:36,401,842...36,512,054
JBrowse link
G Gga1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 acts_upstream_of ISO (PMID:22836275) MGI PMID:22836275 NCBI chrNW_004955413:24,018,595...24,037,887
Ensembl chrNW_004955413:24,018,595...24,037,887
JBrowse link
G Gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 acts_upstream_of ISO (PMID:22836275) MGI PMID:22836275 NCBI chrNW_004955553:2,103,694...2,124,748
Ensembl chrNW_004955553:2,108,379...2,124,748
JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A acts_upstream_of ISO (PMID:15317856) MGI PMID:15317856 NCBI chrNW_004955442:8,171,114...8,565,187
Ensembl chrNW_004955442:8,174,232...8,562,059
JBrowse link
G Hamp hepcidin antimicrobial peptide acts_upstream_of ISO (PMID:21700773) MGI PMID:21700773 NCBI chrNW_004955468:4,576,080...4,577,591
Ensembl chrNW_004955468:4,575,510...4,577,649
JBrowse link
G Htra2 HtrA serine peptidase 2 involved_in ISO (PMID:17297443) ParkinsonsUK-UCL PMID:17297443 NCBI chrNW_004955424:11,255,756...11,259,170
Ensembl chrNW_004955424:11,255,756...11,259,170
JBrowse link
G Ide insulin degrading enzyme involved_in ISO degradation of oxidized proteins in liver peroxisomes
(PMID:20876579)
(PMID:20364150)
RGD
ARUK-UCL
UniProt
PMID:11235899 PMID:20364150 PMID:20876579 RGD:1627575 NCBI chrNW_004955425:819,461...926,440
Ensembl chrNW_004955425:847,615...926,318
JBrowse link
G Il17ra interleukin 17 receptor A involved_in ISO (PMID:28561022) MGI PMID:28561022 NCBI chrNW_004955454:5,230,384...5,252,769
Ensembl chrNW_004955454:5,230,522...5,254,394
JBrowse link
G Itch itchy E3 ubiquitin protein ligase acts_upstream_of ISO (PMID:14973438) MGI PMID:14973438 NCBI chrNW_004955422:26,810,829...26,918,517
Ensembl chrNW_004955422:26,809,972...26,887,123
JBrowse link
G Klhl3 kelch like family member 3 involved_in ISO (PMID:23576762), (PMID:25313067) MGI PMID:23576762 PMID:25313067 NCBI chrNW_004955408:32,596,497...32,719,967
Ensembl chrNW_004955408:32,596,497...32,721,059
JBrowse link
G Lamp2 lysosomal associated membrane protein 2 involved_in ISO (PMID:36586411) UniProt PMID:36586411 NCBI chrNW_004955572:1,423,048...1,464,443
Ensembl chrNW_004955572:1,422,981...1,462,622
JBrowse link
G Lnpep leucyl and cystinyl aminopeptidase acts_upstream_of_or_within ISO (PMID:11884418) MGI PMID:11884418 NCBI chrNW_004955418:15,631,703...15,718,711
Ensembl chrNW_004955418:15,640,143...15,718,711
JBrowse link
G Lonp1 lon peptidase 1, mitochondrial involved_in ISO (PMID:37327776) RGD
UniProt
PMID:12752449 PMID:37327776 RGD:1580665 NCBI chrNW_004955495:3,712,173...3,729,556
Ensembl chrNW_004955495:3,712,199...3,731,301
JBrowse link
G Lpcat1 lysophosphatidylcholine acyltransferase 1 acts_upstream_of ISO (PMID:20018880) MGI PMID:20018880 NCBI chrNW_004955504:760,941...791,996
Ensembl chrNW_004955504:758,881...791,996
JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO (PMID:18077552) UniProt PMID:18077552 NCBI chrNW_004955419:1,121,127...1,154,356
Ensembl chrNW_004955419:1,121,127...1,154,356
JBrowse link
G Mme membrane metalloendopeptidase ISO RGD PMID:15308303 PMID:15908023 RGD:1581744 RGD:1600807 NCBI chrNW_004955448:6,193,113...6,311,666
Ensembl chrNW_004955448:6,226,059...6,314,949
JBrowse link
G Mmp13 matrix metallopeptidase 13 ISO RGD PMID:17941091 RGD:2296055 NCBI chrNW_004955412:6,106,994...6,118,760
Ensembl chrNW_004955412:6,106,994...6,118,760
JBrowse link
G Mmp14 matrix metallopeptidase 14 involved_in ISO (PMID:35177851) UniProt PMID:35177851 NCBI chrNW_004955409:37,438,924...37,448,704
Ensembl chrNW_004955409:37,440,541...37,448,437
JBrowse link
G Mmp2 matrix metallopeptidase 2 ISO RGD PMID:16899336 RGD:1601417 NCBI chrNW_004955433:13,024,844...13,050,041
Ensembl chrNW_004955433:13,024,418...13,052,775
JBrowse link
G Mmp20 matrix metallopeptidase 20 acts_upstream_of_or_within ISO (PMID:22243248) MGI PMID:22243248 NCBI chrNW_004955412:5,815,450...5,869,016
Ensembl chrNW_004955412:5,815,450...5,869,016
JBrowse link
G Mmp8 matrix metallopeptidase 8 ISO RGD PMID:16153442 RGD:2298554 NCBI chrNW_004955412:5,928,997...5,939,012
Ensembl chrNW_004955412:5,928,997...5,939,012
JBrowse link
G Mmp9 matrix metallopeptidase 9 ISO RGD PMID:11788364 PMID:16303975 RGD:1580555 RGD:631244 NCBI chrNW_004955445:11,295,500...11,303,322
Ensembl chrNW_004955445:11,295,448...11,303,288
JBrowse link
G Ndfip1 Nedd4 family interacting protein 1 acts_upstream_of ISO (PMID:17137798) MGI PMID:17137798 NCBI chrNW_004955415:11,643,846...11,666,131
Ensembl chrNW_004955415:11,643,846...11,666,131
JBrowse link
G Nln neurolysin ISO RGD PMID:7836437 RGD:9831155 NCBI chrNW_004955446:3,258,278...3,374,337
Ensembl chrNW_004955446:3,256,078...3,374,462
JBrowse link
G Notch1 notch receptor 1 involved_in ISO (PMID:28561022) MGI PMID:28561022 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259
JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 involved_in ISO (PMID:29934320) MGI PMID:29934320 NCBI chrNW_004955484:7,012,373...7,028,182
Ensembl chrNW_004955484:7,012,506...7,027,604
JBrowse link
G Nrg1 neuregulin 1 acts_upstream_of ISO (PMID:20448149) MGI PMID:20448149 NCBI chrNW_004955463:8,009,436...9,037,116
Ensembl chrNW_004955463:8,009,530...9,037,116
JBrowse link
G P2rx7 purinergic receptor P2X 7 acts_upstream_of_or_within ISO (PMID:11489964) MGI PMID:11489964 NCBI chrNW_004955482:7,048,674...7,087,525
Ensembl chrNW_004955482:7,048,776...7,086,926
JBrowse link
G Pappa pappalysin 1 ISO RGD PMID:15754336 RGD:1642332 NCBI chrNW_004955419:11,415,666...11,645,994
Ensembl chrNW_004955419:11,420,638...11,646,145
JBrowse link
G Pdlim2 PDZ and LIM domain 2 involved_in ISO (PMID:29934320) MGI PMID:29934320 NCBI chrNW_004955403:46,006,255...46,019,865 JBrowse link
G Pgpep1 pyroglutamyl-peptidase I ISO RGD PMID:14600395 RGD:1303965 NCBI chrNW_004955524:3,138,393...3,148,321
Ensembl chrNW_004955524:3,138,393...3,148,331
JBrowse link
G Pja1 praja ring finger ubiquitin ligase 1 acts_upstream_of_or_within ISO (PMID:11959851) MGI PMID:11959851 NCBI chrNW_004955475:8,688,467...8,693,010
Ensembl chrNW_004955475:8,688,888...8,690,720
JBrowse link
G Ppt1 palmitoyl-protein thioesterase 1 acts_upstream_of_or_within ISO (PMID:16368712) MGI PMID:16368712 NCBI chrNW_004955452:17,518,345...17,549,112
Ensembl chrNW_004955452:17,529,115...17,549,664
JBrowse link
G Prep prolyl endopeptidase ISO RGD PMID:11792464 PMID:17415460 RGD:1626457 RGD:633649 NCBI chrNW_004955411:30,698,112...30,797,096
Ensembl chrNW_004955411:30,698,112...30,835,923
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:21376232) ParkinsonsUK-UCL PMID:21376232 NCBI chrNW_004955439:18,664,230...19,953,358
Ensembl chrNW_004955439:18,664,379...19,951,152
JBrowse link
G Proc protein C, inactivator of coagulation factors Va and VIIIa ISO RGD PMID:1440533 RGD:11100042 NCBI chrNW_004955459:3,097,229...3,105,566
Ensembl chrNW_004955459:3,094,120...3,104,135
JBrowse link
G Rab12 RAB12, member RAS oncogene family involved_in ISO (PMID:21718402) UniProt PMID:21718402 NCBI chrNW_004955402:3,102,709...3,109,701
Ensembl chrNW_004955402:3,103,708...3,110,701
JBrowse link
G Rbx1 ring-box 1 acts_upstream_of_or_within ISO (PMID:15601820) MGI PMID:15601820 NCBI chrNW_004955413:26,579,759...26,592,980
Ensembl chrNW_004955413:26,579,759...26,592,980
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit acts_upstream_of ISO (PMID:15923614) MGI PMID:15923614 NCBI chrNW_004955422:19,602,930...19,612,263
Ensembl chrNW_004955422:19,603,345...19,611,516
JBrowse link
G Ripk1 receptor interacting serine/threonine kinase 1 involved_in ISO (PMID:17389591) UniProt PMID:17389591 NCBI chrNW_004955465:10,127,907...10,167,895
Ensembl chrNW_004955465:10,128,931...10,168,399
JBrowse link
G Rnf170 ring finger protein 170 acts_upstream_of_or_within ISO (PMID:31076723) MGI PMID:31076723 NCBI chrNW_004955457:13,093,914...13,148,800
Ensembl chrNW_004955457:13,096,483...13,147,637
JBrowse link
G Rnf5 ring finger protein 5 involved_in ISO (PMID:19285439) UniProt PMID:19285439 NCBI chrNW_004955437:643,133...645,528
Ensembl chrNW_004955437:643,170...645,528
JBrowse link
G Serpine2 serpin family E member 2 acts_upstream_of ISO (PMID:15509762) MGI PMID:15509762 NCBI chrNW_004955453:10,049,822...10,076,155
Ensembl chrNW_004955453:10,027,104...10,076,645
JBrowse link
G Siah1 siah E3 ubiquitin protein ligase 1 involved_in ISO (PMID:11389840) UniProt PMID:11389840 NCBI chrNW_004955474:6,970,383...6,982,231
Ensembl chrNW_004955474:6,978,130...6,981,189
JBrowse link
G Slc6a17 solute carrier family 6 member 17 involved_in ISO PMID:19147495 SynGO PMID:19147495 RGD:8554196 NCBI chrNW_004955435:13,668,690...13,717,401
Ensembl chrNW_004955435:13,668,681...13,720,431
JBrowse link
G Slc6a7 solute carrier family 6 member 7 involved_in ISO (PMID:7651355)
PMID:6286882
SynGO PMID:6286882 PMID:7651355 RGD:155230706 NCBI chrNW_004955415:4,314,090...4,332,659
Ensembl chrNW_004955415:4,314,067...4,332,665
JBrowse link
G Slc6a8 solute carrier family 6 member 8 involved_in ISO PMID:20731764 SynGO PMID:20731764 RGD:13702397 NCBI chrNW_004955580:419,696...426,727 JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:37871017) MGI PMID:37871017 NCBI chrNW_004955416:11,084,448...11,168,478
Ensembl chrNW_004955416:11,086,176...11,168,332
JBrowse link
G Sqstm1 sequestosome 1 involved_in ISO (PMID:27498865), (PMID:30612879), (PMID:32715615), (PMID:36221902) UniProt PMID:27498865 PMID:30612879 PMID:32715615 PMID:36221902 NCBI chrNW_004955408:757,426...764,989
Ensembl chrNW_004955408:757,426...771,615
JBrowse link
G St14 ST14 transmembrane serine protease matriptase ISO RGD PMID:11573963 RGD:634217 NCBI chrNW_004955412:31,091,313...31,129,050
Ensembl chrNW_004955412:31,090,504...31,129,050
JBrowse link
G Syvn1 synoviolin 1 involved_in ISO (PMID:20160352) ParkinsonsUK-UCL PMID:20160352 NCBI chrNW_004955422:20,067,933...20,074,947
Ensembl chrNW_004955422:20,068,848...20,073,850
JBrowse link
G Tpp1 tripeptidyl peptidase 1 ISO RGD PMID:10679303 RGD:1581099 NCBI chrNW_004955414:22,324,847...22,330,912
Ensembl chrNW_004955414:22,324,856...22,330,912
JBrowse link
G Tpp2 tripeptidyl peptidase 2 ISO RGD PMID:12147224 RGD:634435 NCBI chrNW_004955404:8,465,877...8,528,372
Ensembl chrNW_004955404:8,463,715...8,528,784
JBrowse link
G Traf2 TNF receptor associated factor 2 acts_upstream_of_or_within ISO (PMID:12958312) MGI PMID:12958312 NCBI chrNW_004955513:4,964,692...4,984,359
Ensembl chrNW_004955513:4,967,984...4,983,987
JBrowse link
G Trim24 tripartite motif containing 24 involved_in ISO (PMID:19556538) UniProt PMID:19556538 NCBI chrNW_004955494:4,308,924...4,421,588
Ensembl chrNW_004955494:4,308,924...4,370,160
JBrowse link
G Ube4b ubiquitination factor E4B acts_upstream_of_or_within ISO (PMID:16314518) MGI PMID:16314518 NCBI chrNW_004955486:3,518,873...3,626,036
Ensembl chrNW_004955486:3,518,740...3,626,121
JBrowse link
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 acts_upstream_of_or_within ISO (PMID:37871017) MGI PMID:37871017 NCBI chrNW_004955527:57,335...185,727
Ensembl chrNW_004955527:57,335...185,727
JBrowse link
G Uchl3 ubiquitin C-terminal hydrolase L3 involved_in ISO (PMID:21762696) UniProt PMID:21762696 NCBI chrNW_004955404:31,414,076...31,465,205
Ensembl chrNW_004955404:31,414,208...31,464,968
JBrowse link
G Utp25 UTP25 small subunit processome component involved_in ISO (PMID:23357851) UniProt PMID:23357851 NCBI chrNW_004955489:2,362,290...2,387,162
Ensembl chrNW_004955489:2,339,745...2,387,103
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (PMID:12832481) MGI PMID:12832481 NCBI chrNW_004955561:1,573,525...1,578,295
Ensembl chrNW_004955561:1,573,525...1,580,511
JBrowse link
acrosome matrix dispersal term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acr acrosin ISO RGD PMID:28859281 RGD:13464336 NCBI chrNW_004955413:33,721,984...33,728,088 JBrowse link
anaphase-promoting complex-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anapc1 anaphase promoting complex subunit 1 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004955470:2,182,163...2,262,804
Ensembl chrNW_004955470:2,183,766...2,262,900
JBrowse link
G Anapc10 anaphase promoting complex subunit 10 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004955428:945,238...1,029,818
Ensembl chrNW_004955428:941,659...1,029,799
JBrowse link
G Anapc13 anaphase promoting complex subunit 13 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004955501:4,096,026...4,103,212
Ensembl chrNW_004955501:4,096,026...4,103,212
JBrowse link
G Anapc15 anaphase promoting complex subunit 15 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004955414:19,218,727...19,222,138
Ensembl chrNW_004955414:19,218,727...19,222,138
JBrowse link
G Anapc16 anaphase promoting complex subunit 16 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004955437:19,367,662...19,381,607
Ensembl chrNW_004955437:19,367,662...19,381,603
JBrowse link
G Anapc2 anaphase promoting complex subunit 2 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004955513:5,183,472...5,194,253
Ensembl chrNW_004955513:5,183,472...5,194,253
JBrowse link
G Anapc4 anaphase promoting complex subunit 4 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004955443:19,620,480...19,653,179
Ensembl chrNW_004955443:19,620,480...19,653,200
JBrowse link
G Anapc5 anaphase promoting complex subunit 5 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004955482:6,951,496...6,980,498
Ensembl chrNW_004955482:6,951,228...6,980,382
JBrowse link
G Anapc7 anaphase promoting complex subunit 7 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004955482:7,302,853...7,328,145
Ensembl chrNW_004955482:7,302,455...7,328,145
JBrowse link
G Cdc16 cell division cycle 16 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004955404:47,126...71,602
Ensembl chrNW_004955404:45,383...71,466
JBrowse link
G Cdc20 cell division cycle 20 involved_in ISO (PMID:17443180)
(PMID:18753608)
UniProt
AgBase
PMID:17443180 PMID:18753608 NCBI chrNW_004955537:2,941,265...2,945,158
Ensembl chrNW_004955537:2,941,265...2,945,158
JBrowse link
G Cdc23 cell division cycle 23 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004955418:2,194,937...2,221,928
Ensembl chrNW_004955418:2,194,689...2,221,928
JBrowse link
G Cdc26 cell division cycle 26 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004955419:14,206,167...14,218,487
Ensembl chrNW_004955419:14,205,691...14,218,595
JBrowse link
G Cdc27 cell division cycle 27 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004955478:9,927,871...10,002,020
Ensembl chrNW_004955478:9,927,871...10,002,020
JBrowse link
G Cul3 cullin 3 acts_upstream_of_or_within ISO (PMID:10500095) MGI PMID:10500095 NCBI chrNW_004955453:9,546,554...9,629,976
Ensembl chrNW_004955453:9,564,522...9,629,976
JBrowse link
G Ecrg4 ECRG4 augurin precursor acts_upstream_of_or_within ISO (PMID:20404145) MGI PMID:20404145 NCBI chrNW_004955470:10,646,585...10,655,311
Ensembl chrNW_004955470:10,645,750...10,659,388
JBrowse link
G Fbxo31 F-box protein 31 involved_in ISO (PMID:19412162) UniProt PMID:19412162 NCBI chrNW_004955541:1,811,010...1,828,734
Ensembl chrNW_004955541:1,811,010...1,828,724
JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 involved_in ISO (PMID:18753608)
(PMID:14701726), (PMID:18662541), (PMID:21596315)
AgBase
UniProt
PMID:14701726 PMID:18662541 PMID:18753608 PMID:21596315 NCBI chrNW_004955495:5,481,914...5,503,690
Ensembl chrNW_004955495:5,481,916...5,505,521
JBrowse link
G Ube2c ubiquitin conjugating enzyme E2 C involved_in ISO (PMID:19822757), (PMID:9122200) UniProt PMID:9122200 PMID:19822757 NCBI chrNW_004955445:11,474,826...11,479,479
Ensembl chrNW_004955445:11,469,063...11,478,759
JBrowse link
G Ube2s ubiquitin conjugating enzyme E2 S involved_in ISO (PMID:19820702), (PMID:19822757) UniProt PMID:19820702 PMID:19822757 NCBI chrNW_004955567:854,518...859,606
Ensembl chrNW_004955567:854,518...859,993
JBrowse link
CAT tailing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nemf nuclear export mediator factor involved_in ISO (PMID:33406423), (PMID:33909987)
(PMID:33909987)
UniProt PMID:33406423 PMID:33909987 NCBI chrNW_004955409:12,855,655...12,901,673
Ensembl chrNW_004955409:12,855,749...12,900,702
JBrowse link
chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg5 autophagy related 5 involved_in ISO PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chrNW_004955411:31,501,191...31,646,407
Ensembl chrNW_004955411:31,522,420...31,646,827
JBrowse link
G Atg7 autophagy related 7 involved_in ISO PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chrNW_004955429:14,076,976...14,301,034
Ensembl chrNW_004955429:14,076,960...14,304,236
JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in
acts_upstream_of_or_within
ISO PMID:18644871 ParkinsonsUK-UCL
MGI
PMID:18644871 RGD:10412301 NCBI chrNW_004955412:23,863,513...23,867,984
Ensembl chrNW_004955412:23,862,590...23,867,984
JBrowse link
G Lamp2 lysosomal associated membrane protein 2 involved_in
acts_upstream_of_or_within
ISO PMID:11082038
(PMID:27628032)
(PMID:18644871)
(PMID:18579532)
(PMID:36586411)
(PMID:24880125), (PMID:27628032), (PMID:8662539)
ParkinsonsUK-UCL
UniProt
MGI
PMID:8662539 PMID:11082038 PMID:18579532 PMID:18644871 PMID:24880125 More... RGD:1581607 NCBI chrNW_004955572:1,423,048...1,464,443
Ensembl chrNW_004955572:1,422,981...1,462,622
JBrowse link
G Synpo2 synaptopodin 2 involved_in ISO PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chrNW_004955428:21,152,210...21,323,254
Ensembl chrNW_004955428:21,154,277...21,360,960
JBrowse link
chondroitin sulfate proteoglycan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gusb glucuronidase beta involved_in ISO (PMID:23897660) MGI PMID:23897660 NCBI chrNW_004955456:8,377,161...8,392,298
Ensembl chrNW_004955456:8,378,654...8,392,252
JBrowse link
G Hexb hexosaminidase subunit beta involved_in ISO (PMID:22451654) MGI PMID:22451654 NCBI chrNW_004955425:25,942,341...25,961,312
Ensembl chrNW_004955425:25,942,278...25,961,312
JBrowse link
G Hyal1 hyaluronidase 1 involved_in ISO (PMID:22451654) MGI PMID:22451654 NCBI chrNW_004955532:2,113,016...2,116,093
Ensembl chrNW_004955532:2,112,771...2,115,952
JBrowse link
G Hyal4 hyaluronidase 4 acts_upstream_of_or_within ISO (PMID:23086929) MGI PMID:23086929 NCBI chrNW_004955479:5,355,667...5,364,092
Ensembl chrNW_004955479:5,355,667...5,364,444
JBrowse link
cytoplasm protein quality control term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004955527:57,335...185,727
Ensembl chrNW_004955527:57,335...185,727
JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004955417:26,997,572...27,085,511
Ensembl chrNW_004955417:26,998,513...27,083,005
JBrowse link
G Vcp valosin containing protein involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004955472:1,111,649...1,124,076
Ensembl chrNW_004955472:1,107,164...1,124,076
JBrowse link
cytoplasm protein quality control by the ubiquitin-proteasome system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf126 ring finger protein 126 involved_in ISO (PMID:24981174) UniProt PMID:24981174 NCBI chrNW_004955495:7,083,952...7,098,442
Ensembl chrNW_004955495:7,095,336...7,102,757
JBrowse link
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004955527:57,335...185,727
Ensembl chrNW_004955527:57,335...185,727
JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004955417:26,997,572...27,085,511
Ensembl chrNW_004955417:26,998,513...27,083,005
JBrowse link
dermatan sulfate proteoglycan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arsb arylsulfatase B involved_in ISO (PMID:24240681) MGI PMID:24240681 NCBI chrNW_004955425:22,120,507...22,281,221
Ensembl chrNW_004955425:22,119,930...22,279,006
JBrowse link
G Hexa hexosaminidase subunit alpha involved_in ISO (PMID:11707436) MGI PMID:11707436 NCBI chrNW_004955450:4,790,342...4,806,862
Ensembl chrNW_004955450:4,790,268...4,806,734
JBrowse link
G Hexb hexosaminidase subunit beta involved_in ISO (PMID:11707436) MGI PMID:11707436 NCBI chrNW_004955425:25,942,341...25,961,312
Ensembl chrNW_004955425:25,942,278...25,961,312
JBrowse link
G Ids iduronate 2-sulfatase involved_in ISO (PMID:30064964) MGI PMID:30064964 NCBI chrNW_004955498:1,863,002...1,886,720
Ensembl chrNW_004955498:1,860,628...1,886,867
JBrowse link
G Idua alpha-L-iduronidase involved_in
acts_upstream_of_or_within
ISO (PMID:24036510)
(PMID:19751987)
(PMID:25854773)
(PMID:19834056)
UniProt
MGI
PMID:19751987 PMID:19834056 PMID:24036510 PMID:25854773 NCBI chrNW_004955514:474,830...488,007
Ensembl chrNW_004955514:475,731...488,007
JBrowse link
elastin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cela1 chymotrypsin like elastase 1 acts_upstream_of_or_within ISO (PMID:24793170) MGI PMID:24793170 NCBI chrNW_004955547:1,810,680...1,823,938
Ensembl chrNW_004955547:1,810,670...1,824,409
JBrowse link
G Mmp12 matrix metallopeptidase 12 involved_in ISO (PMID:29101312) ARUK-UCL PMID:29101312 NCBI chrNW_004955412:6,045,146...6,057,112
Ensembl chrNW_004955412:6,045,100...6,057,262
JBrowse link
epidermal growth factor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:18272684)
(PMID:16282324)
BHF-UCL
UniProt
PMID:16282324 PMID:18272684 NCBI chrNW_004955429:15,103,792...15,167,498 JBrowse link
G Snx5 sorting nexin 5 ISO RGD PMID:16487940 RGD:13508623 NCBI chrNW_004955415:26,786,836...26,805,762
Ensembl chrNW_004955415:26,785,326...26,796,566
JBrowse link
ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amfr autocrine motility factor receptor involved_in ISO (PMID:11724934), (PMID:17872946)
(PMID:16168377), (PMID:24810856)
UniProt
ParkinsonsUK-UCL
PMID:11724934 PMID:16168377 PMID:17872946 PMID:24810856 NCBI chrNW_004955433:14,172,871...14,205,484
Ensembl chrNW_004955433:14,172,808...14,212,110
JBrowse link
G Aup1 AUP1 lipid droplet regulating VLDL assembly factor involved_in ISO (PMID:21857022), (PMID:23223569) UniProt PMID:21857022 PMID:23223569 NCBI chrNW_004955424:11,259,288...11,262,413
Ensembl chrNW_004955424:11,259,432...11,262,269
JBrowse link
G Bag6 BAG cochaperone 6 involved_in ISO (PMID:23129660), (PMID:24981174)
(PMID:26565908)
UniProt PMID:23129660 PMID:24981174 PMID:26565908 NCBI chrNW_004955437:176,848...188,243
Ensembl chrNW_004955437:176,797...188,003
JBrowse link
G Brsk2 BR serine/threonine kinase 2 involved_in ISO (PMID:23907667) ParkinsonsUK-UCL PMID:23907667 NCBI chrNW_004955476:10,911,515...10,951,544
Ensembl chrNW_004955476:10,911,515...10,929,183
JBrowse link
G Ccdc47 coiled-coil domain containing 47 involved_in
acts_upstream_of_or_within
ISO (PMID:25009997) UniProt
MGI
PMID:25009997 NCBI chrNW_004955478:8,053,057...8,074,530
Ensembl chrNW_004955478:8,053,057...8,074,820
JBrowse link
G Derl1 derlin 1 involved_in ISO (PMID:18555783), (PMID:24089527), (PMID:25239945)
(PMID:15215856), (PMID:17872946)
ParkinsonsUK-UCL
UniProt
PMID:15215856 PMID:17872946 PMID:18555783 PMID:24089527 PMID:25239945 NCBI chrNW_004955540:1,918,230...1,944,186
Ensembl chrNW_004955540:1,917,655...1,944,214
JBrowse link
G Derl2 derlin 2 involved_in ISO (PMID:16449189) UniProt PMID:16449189 NCBI chrNW_004955467:10,824,922...10,837,408
Ensembl chrNW_004955467:10,825,341...10,837,328
JBrowse link
G Derl3 derlin 3 involved_in ISO (PMID:22607976) UniProt PMID:22607976 NCBI chrNW_004955455:8,415,868...8,418,753
Ensembl chrNW_004955455:8,415,839...8,421,762
JBrowse link
G Dnajb12 DnaJ heat shock protein family (Hsp40) member B12 involved_in ISO (PMID:21148293), (PMID:21150129) UniProt PMID:21148293 PMID:21150129 NCBI chrNW_004955437:19,266,206...19,285,654
Ensembl chrNW_004955437:19,266,206...19,288,854
JBrowse link
G Dnajb2 DnaJ heat shock protein family (Hsp40) member B2 involved_in ISO (PMID:15936278) BHF-UCL PMID:15936278 NCBI chrNW_004955453:14,147,286...14,154,396
Ensembl chrNW_004955453:14,148,070...14,154,670
JBrowse link
G Dnajb9 DnaJ heat shock protein family (Hsp40) member B9 involved_in ISO (PMID:18400946)
(PMID:22267725)
UniProt PMID:18400946 PMID:22267725 NCBI chrNW_004955410:12,814,993...12,820,852
Ensembl chrNW_004955410:12,814,479...12,822,777
JBrowse link
G Dnajc10 DnaJ heat shock protein family (Hsp40) member C10 involved_in ISO (PMID:18400946)
(PMID:18653895), (PMID:21329881)
UniProt PMID:18400946 PMID:18653895 PMID:21329881 NCBI chrNW_004955403:14,681,015...14,717,060
Ensembl chrNW_004955403:14,680,852...14,717,060
JBrowse link
G Ecpas Ecm29 proteasome adaptor and scaffold involved_in ISO (PMID:15496406) UniProt PMID:15496406 NCBI chrNW_004955419:15,775,208...15,886,101
Ensembl chrNW_004955419:15,782,453...15,890,022
JBrowse link
G Edem1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in
acts_upstream_of_or_within
ISO (PMID:21062743), (PMID:25092655)
(PMID:11375934)
ParkinsonsUK-UCL
MGI
PMID:11375934 PMID:21062743 PMID:25092655 NCBI chrNW_004955421:8,196,631...8,225,561
Ensembl chrNW_004955421:8,196,557...8,225,561
JBrowse link
G Edem2 ER degradation enhancing alpha-mannosidase like protein 2 involved_in ISO (PMID:15537790), (PMID:25092655) ParkinsonsUK-UCL PMID:15537790 PMID:25092655 NCBI chrNW_004955422:26,243,034...26,271,849
Ensembl chrNW_004955422:26,242,986...26,273,297
JBrowse link
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 involved_in ISO (PMID:25092655)
(PMID:16431915)
ARUK-UCL
ParkinsonsUK-UCL
PMID:16431915 PMID:25092655 NCBI chrNW_004955406:23,329,400...23,401,282
Ensembl chrNW_004955406:23,329,400...23,401,281
JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 involved_in ISO (PMID:17707796) UniProt PMID:17707796 NCBI chrNW_004955424:210,867...279,267
Ensembl chrNW_004955424:226,038...280,593
JBrowse link
G Erlec1 endoplasmic reticulum lectin 1 involved_in ISO (PMID:18502753) UniProt PMID:18502753 NCBI chrNW_004955441:19,535,425...19,557,960
Ensembl chrNW_004955441:19,535,425...19,557,458
JBrowse link
G Erlin1 ER lipid raft associated 1 involved_in ISO (PMID:19240031) UniProt PMID:19240031 NCBI chrNW_004955507:6,029,247...6,062,946
Ensembl chrNW_004955507:6,028,324...6,063,689
JBrowse link
G Erlin2 ER lipid raft associated 2 involved_in ISO (PMID:19240031) UniProt PMID:19240031 NCBI chrNW_004955463:13,445,468...13,460,370
Ensembl chrNW_004955463:13,444,722...13,463,132
JBrowse link
G Faf2 Fas associated factor family member 2 involved_in ISO (PMID:24215460) UniProt PMID:24215460 NCBI chrNW_004955408:28,737,597...28,797,143
Ensembl chrNW_004955408:28,737,279...28,797,564
JBrowse link
G Fbxo2 F-box protein 2 acts_upstream_of_or_within ISO (PMID:15723043) MGI PMID:15723043 NCBI chrNW_004955486:2,212,001...2,217,260
Ensembl chrNW_004955486:2,212,001...2,218,017
JBrowse link
G Fbxo6 F-box protein 6 involved_in ISO (PMID:12939278)
(PMID:21062743)
UniProt
ParkinsonsUK-UCL
PMID:12939278 PMID:21062743 NCBI chrNW_004955486:2,197,296...2,205,947
Ensembl chrNW_004955486:2,197,467...2,201,256
JBrowse link
G Foxred2 FAD dependent oxidoreductase domain containing 2 involved_in ISO (PMID:19706418) UniProt PMID:19706418 NCBI chrNW_004955413:23,070,715...23,091,402
Ensembl chrNW_004955413:23,068,642...23,091,396
JBrowse link
G Get4 guided entry of tail-anchored proteins factor 4 involved_in ISO (PMID:21636303) ParkinsonsUK-UCL PMID:21636303 NCBI chrNW_004955460:8,620,913...8,634,778
Ensembl chrNW_004955460:8,620,209...8,634,778
JBrowse link
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in ISO (PMID:28827405) UniProt PMID:28827405 NCBI chrNW_004955433:14,609,275...14,621,774
Ensembl chrNW_004955433:14,608,375...14,621,839
JBrowse link
G Hsp90b1 heat shock protein 90 beta family member 1 involved_in
NOT|involved_in
ISO (PMID:18264092)
(PMID:24899641)
UniProt PMID:18264092 PMID:24899641 NCBI chrNW_004955405:38,629,691...38,645,202
Ensembl chrNW_004955405:38,629,691...38,645,202
JBrowse link
G Jkamp JNK1/MAPK8 associated membrane protein involved_in ISO (PMID:19269966) UniProt PMID:19269966 NCBI chrNW_004955466:13,205,424...13,225,573
Ensembl chrNW_004955466:13,205,424...13,225,573
JBrowse link
G Man1a1 mannosidase alpha class 1A member 1 involved_in ISO (PMID:27108681) UniProt PMID:27108681 NCBI chrNW_004955436:1,830,275...1,972,861
Ensembl chrNW_004955436:1,830,211...1,935,970
JBrowse link
G Man1b1 mannosidase alpha class 1B member 1 involved_in
acts_upstream_of_or_within
ISO (PMID:18003979), (PMID:21062743)
(PMID:15294975)
ParkinsonsUK-UCL
MGI
PMID:15294975 PMID:18003979 PMID:21062743 NCBI chrNW_004955513:5,109,651...5,122,568
Ensembl chrNW_004955513:5,111,046...5,122,442
JBrowse link
G Nploc4 NPL4 homolog, ubiquitin recognition factor involved_in ISO PMID:12847084
(PMID:12847084)
ComplexPortal PMID:12847084 RGD:10047330 NCBI chrNW_004955506:1,451,337...1,513,455
Ensembl chrNW_004955506:1,451,337...1,513,455
JBrowse link
G Os9 OS9 endoplasmic reticulum lectin involved_in ISO (PMID:18264092), (PMID:18417469), (PMID:19346256)
(PMID:24899641)
UniProt PMID:18264092 PMID:18417469 PMID:19346256 PMID:24899641 NCBI chrNW_004955458:5,407,709...5,432,646
Ensembl chrNW_004955458:5,407,739...5,432,085
JBrowse link
G Rcn3 reticulocalbin 3 involved_in ISO (PMID:26252542) UniProt PMID:26252542 NCBI chrNW_004955559:1,309,621...1,319,925
Ensembl chrNW_004955559:1,309,621...1,319,925
JBrowse link
G Rhbdd1 rhomboid domain containing 1 involved_in ISO (PMID:22795130) UniProt PMID:22795130 NCBI chrNW_004955453:7,527,090...7,656,689
Ensembl chrNW_004955453:7,528,916...7,644,477
JBrowse link
G Rnf103 ring finger protein 103 involved_in ISO (PMID:18675248) UniProt PMID:18675248 NCBI chrNW_004955424:1,097,981...1,161,267
Ensembl chrNW_004955424:1,097,981...1,117,844
Ensembl chrNW_004955424:1,097,981...1,117,844
JBrowse link
G Rnf139 ring finger protein 139 involved_in ISO (PMID:25239945) ParkinsonsUK-UCL PMID:25239945 NCBI chrNW_004955540:3,140,649...3,153,546
Ensembl chrNW_004955540:3,140,649...3,153,546
JBrowse link
G Rnf185 ring finger protein 185 involved_in ISO (PMID:24019521) ParkinsonsUK-UCL PMID:24019521 NCBI chrNW_004955455:5,351,530...5,394,615
Ensembl chrNW_004955455:5,351,488...5,395,026
JBrowse link
G Rnf5 ring finger protein 5 involved_in ISO (PMID:19269966), (PMID:24019521) UniProt PMID:19269966 PMID:24019521 NCBI chrNW_004955437:643,133...645,528
Ensembl chrNW_004955437:643,170...645,528
JBrowse link
G Sdf2l1 stromal cell derived factor 2 like 1 acts_upstream_of_or_within ISO PMID:23444373 MGI PMID:23444373 RGD:8554667 NCBI chrNW_004955442:17,468,302...17,470,296
Ensembl chrNW_004955442:17,468,302...17,470,296
JBrowse link
G Sec61b SEC61 translocon subunit beta involved_in ISO (PMID:8945469) UniProt PMID:8945469 NCBI chrNW_004955419:26,414,891...26,423,260
Ensembl chrNW_004955419:26,410,911...26,423,718
JBrowse link
G Sel1l SEL1L adaptor subunit of SYVN1 ubiquitin ligase involved_in ISO (PMID:21454652), (PMID:26471130)
(PMID:25066055)
ParkinsonsUK-UCL
UniProt
PMID:21454652 PMID:25066055 PMID:26471130 NCBI chrNW_004955438:5,030,915...5,082,015
Ensembl chrNW_004955438:5,030,915...5,082,118
JBrowse link
G Selenos selenoprotein S involved_in ISO (PMID:15215856) UniProt PMID:15215856 NCBI chrNW_004955416:28,152,984...28,162,173
Ensembl chrNW_004955416:28,153,460...28,162,095
JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISO (PMID:23129660) UniProt PMID:23129660 NCBI chrNW_004955495:5,025,038...5,051,810
Ensembl chrNW_004955495:5,031,229...5,052,389
JBrowse link
G Stt3b STT3 oligosaccharyltransferase complex catalytic subunit B involved_in ISO (PMID:22607976) UniProt PMID:22607976 NCBI chrNW_004955430:22,986,673...23,070,923
Ensembl chrNW_004955430:22,986,762...23,069,383
JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in ISO (PMID:23990462) ParkinsonsUK-UCL PMID:23990462 NCBI chrNW_004955442:16,521,130...16,523,733
Ensembl chrNW_004955442:16,521,130...16,523,468
JBrowse link
G Syvn1 synoviolin 1 acts_upstream_of_or_within
involved_in
ISO (PMID:21245296)
(PMID:21454652)
(PMID:12459480), (PMID:14593114), (PMID:17059562), (PMID:22590560)
(PMID:22607976), (PMID:26471130), (PMID:28827405)
MGI
ParkinsonsUK-UCL
UniProt
PMID:12459480 PMID:14593114 PMID:17059562 PMID:21245296 PMID:21454652 More... NCBI chrNW_004955422:20,067,933...20,074,947
Ensembl chrNW_004955422:20,068,848...20,073,850
JBrowse link
G Tmem129 transmembrane protein 129, E3 ubiquitin ligase involved_in ISO (PMID:24807418) ParkinsonsUK-UCL PMID:24807418 NCBI chrNW_004955514:968,763...972,918
Ensembl chrNW_004955514:968,763...972,918
JBrowse link
G Tmem67 transmembrane protein 67 involved_in ISO (PMID:19815549) UniProt PMID:19815549 NCBI chrNW_004955417:10,097,488...10,137,959
Ensembl chrNW_004955417:10,097,472...10,138,644
JBrowse link
G Tmub1 transmembrane and ubiquitin like domain containing 1 involved_in ISO (PMID:21343306) UniProt PMID:21343306 NCBI chrNW_004955491:5,518,199...5,520,743
Ensembl chrNW_004955491:5,518,193...5,520,521
JBrowse link
G Tor1a torsin family 1 member A involved_in ISO (PMID:17200151) UniProt PMID:17200151 NCBI chrNW_004955513:30,655...36,299
Ensembl chrNW_004955513:30,655...36,360
JBrowse link
G Trim13 tripartite motif containing 13 involved_in ISO (PMID:17314412) UniProt PMID:17314412 NCBI chrNW_004955431:3,324,331...3,395,724
Ensembl chrNW_004955431:3,324,331...3,395,724
JBrowse link
G Trim25 tripartite motif containing 25 involved_in ISO (PMID:24810856) ParkinsonsUK-UCL PMID:24810856 NCBI chrNW_004955451:5,918,287...5,934,252
Ensembl chrNW_004955451:5,918,287...5,934,258
JBrowse link
G Ube2g2 ubiquitin conjugating enzyme E2 G2 involved_in
acts_upstream_of_or_within
ISO (PMID:22607976)
(PMID:11278356)
UniProt
MGI
PMID:11278356 PMID:22607976 NCBI chrNW_004955407:41,683,771...41,724,014
Ensembl chrNW_004955407:41,683,720...41,724,014
JBrowse link
G Ube2j1 ubiquitin conjugating enzyme E2 J1 acts_upstream_of_or_within
involved_in
ISO (PMID:21245296)
(PMID:24020373)
(PMID:22607976)
MGI
UniProt
PMID:21245296 PMID:22607976 PMID:24020373 NCBI chrNW_004955411:16,076,647...16,091,554
Ensembl chrNW_004955411:16,074,551...16,091,570
JBrowse link
G Ube2j2 ubiquitin conjugating enzyme E2 J2 involved_in ISO (PMID:24807418) ParkinsonsUK-UCL PMID:24807418 NCBI chrNW_004955486:9,519,467...9,539,666
Ensembl chrNW_004955486:9,524,459...9,540,562
JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO (PMID:19822669) UniProt PMID:19822669 NCBI chrNW_004955432:3,575,034...3,617,029
Ensembl chrNW_004955432:3,575,272...3,616,691
JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO (PMID:24215460) UniProt PMID:24215460 NCBI chrNW_004955475:3,260,209...3,263,586
Ensembl chrNW_004955475:3,260,503...3,262,380
JBrowse link
G Ubxn4 UBX domain protein 4 involved_in ISO (PMID:19822669) UniProt PMID:19822669 NCBI chrNW_004955440:3,106,055...3,143,214
Ensembl chrNW_004955440:3,106,057...3,141,323
JBrowse link
G Ubxn6 UBX domain protein 6 involved_in ISO (PMID:19275885) UniProt PMID:19275885 NCBI chrNW_004955495:4,456,182...4,465,954
Ensembl chrNW_004955495:4,456,308...4,466,254
JBrowse link
G Ubxn8 UBX domain protein 8 involved_in ISO (PMID:21949850) UniProt PMID:21949850 NCBI chrNW_004955463:7,189,822...7,213,083
Ensembl chrNW_004955463:7,190,390...7,217,254
JBrowse link
G Ufd1 ubiquitin recognition factor in ER associated degradation 1 involved_in ISO (PMID:24089527)
(PMID:12847084)
ParkinsonsUK-UCL
ComplexPortal
PMID:12847084 PMID:24089527 RGD:10047330 NCBI chrNW_004955442:18,548,545...18,568,989
Ensembl chrNW_004955442:18,548,545...18,569,366
JBrowse link
G Umod uromodulin acts_upstream_of_or_within ISO (PMID:28437467) MGI PMID:28437467 NCBI chrNW_004955442:3,986,936...4,001,155
Ensembl chrNW_004955442:3,985,308...3,999,598
JBrowse link
G Usp19 ubiquitin specific peptidase 19 involved_in ISO (PMID:19465887) UniProt PMID:19465887 NCBI chrNW_004955532:1,104,212...1,115,267
Ensembl chrNW_004955532:1,104,591...1,113,567
JBrowse link
G Vcp valosin containing protein involved_in ISO (PMID:17872946), (PMID:24129571), (PMID:25088257)
(PMID:12847084)
(PMID:20104022), (PMID:22607976), (PMID:24089527), (PMID:26265139)
UniProt
ComplexPortal
PMID:12847084 PMID:17872946 PMID:20104022 PMID:22607976 PMID:24089527 More... RGD:10047330 NCBI chrNW_004955472:1,111,649...1,124,076
Ensembl chrNW_004955472:1,107,164...1,124,076
JBrowse link
G Wfs1 wolframin ER transmembrane glycoprotein involved_in ISO (PMID:20160352) ParkinsonsUK-UCL PMID:20160352 NCBI chrNW_004955514:3,902,508...3,924,281
Ensembl chrNW_004955514:3,902,454...3,924,610
JBrowse link
glycoprotein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 acts_upstream_of_or_within ISO (PMID:16431915) MGI PMID:16431915 NCBI chrNW_004955406:23,329,400...23,401,282
Ensembl chrNW_004955406:23,329,400...23,401,281
JBrowse link
G Fbxo2 F-box protein 2 acts_upstream_of_or_within
involved_in
ISO (PMID:15723043)
(PMID:12140560)
MGI
UniProt
PMID:12140560 PMID:15723043 NCBI chrNW_004955486:2,212,001...2,217,260
Ensembl chrNW_004955486:2,212,001...2,218,017
JBrowse link
G Fbxo6 F-box protein 6 acts_upstream_of_or_within ISO (PMID:15723043) MGI PMID:15723043 NCBI chrNW_004955486:2,197,296...2,205,947
Ensembl chrNW_004955486:2,197,467...2,201,256
JBrowse link
G Glb1 galactosidase beta 1 involved_in ISO (PMID:31720227) FlyBase PMID:31720227 NCBI chrNW_004955421:230,957...311,504
Ensembl chrNW_004955421:231,076...312,500
JBrowse link
G Manba mannosidase beta acts_upstream_of_or_within
involved_in
ISO (PMID:3447593)
(PMID:16377659)
MGI
UniProt
PMID:3447593 PMID:16377659 NCBI chrNW_004955496:5,744,374...5,837,974
Ensembl chrNW_004955496:5,744,250...5,841,293
JBrowse link
G Neu2 neuraminidase 2 involved_in ISO (PMID:14613940) UniProt PMID:14613940 NCBI chrNW_004955453:3,054,626...3,063,070
Ensembl chrNW_004955453:3,052,297...3,061,791
JBrowse link
G Neu4 neuraminidase 4 involved_in ISO (PMID:15213228), (PMID:15847605)
(PMID:19506080), (PMID:22393058)
UniProt PMID:15213228 PMID:15847605 PMID:19506080 PMID:22393058 NCBI chrNW_004955542:66,214...70,456
Ensembl chrNW_004955542:66,174...71,058
JBrowse link
G Ngly1 N-glycanase 1 involved_in ISO (PMID:15358861) UniProt PMID:15358861 NCBI chrNW_004955430:17,564,319...17,645,564
Ensembl chrNW_004955430:17,564,319...17,645,564
JBrowse link
G Stt3b STT3 oligosaccharyltransferase complex catalytic subunit B involved_in ISO (PMID:22607976) UniProt PMID:22607976 NCBI chrNW_004955430:22,986,673...23,070,923
Ensembl chrNW_004955430:22,986,762...23,069,383
JBrowse link
heparan sulfate proteoglycan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gns glucosamine (N-acetyl)-6-sulfatase involved_in ISO (PMID:15595925) FlyBase PMID:15595925 NCBI chrNW_004955458:11,471,376...11,500,793
Ensembl chrNW_004955458:11,471,376...11,500,838
JBrowse link
G Gpc1 glypican 1 involved_in ISO (PMID:12732622) UniProt PMID:12732622 NCBI chrNW_004955542:947,556...968,295
Ensembl chrNW_004955542:947,556...968,295
JBrowse link
G Gusb glucuronidase beta involved_in ISO (PMID:11273777), (PMID:23897660) MGI PMID:11273777 PMID:23897660 NCBI chrNW_004955456:8,377,161...8,392,298
Ensembl chrNW_004955456:8,378,654...8,392,252
JBrowse link
G Hgsnat heparan-alpha-glucosaminide N-acetyltransferase involved_in ISO (PMID:16960811) MGI PMID:16960811 NCBI chrNW_004955457:13,351,963...13,386,521
Ensembl chrNW_004955457:13,349,213...13,387,251
JBrowse link
G Hpse heparanase involved_in ISO (PMID:12213822)
(PMID:12460766)
UniProt
MGI
PMID:12213822 PMID:12460766 NCBI chrNW_004955474:6,367,467...6,394,395
Ensembl chrNW_004955474:6,367,467...6,394,395
JBrowse link
G Ids iduronate 2-sulfatase involved_in ISO (PMID:17876721) MGI PMID:17876721 NCBI chrNW_004955498:1,863,002...1,886,720
Ensembl chrNW_004955498:1,860,628...1,886,867
JBrowse link
G Idua alpha-L-iduronidase involved_in ISO (PMID:25854773)
(PMID:15979918)
MGI PMID:15979918 PMID:25854773 NCBI chrNW_004955514:474,830...488,007
Ensembl chrNW_004955514:475,731...488,007
JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase involved_in ISO (PMID:10588735) MGI PMID:10588735 NCBI chrNW_004955451:16,445,338...16,449,243
Ensembl chrNW_004955451:16,445,338...16,450,062
JBrowse link
G Sgsh N-sulfoglucosamine sulfohydrolase involved_in ISO (PMID:15146460)
(PMID:11273777)
(PMID:10561464)
UniProt
MGI
PMID:10561464 PMID:11273777 PMID:15146460 NCBI chrNW_004955506:2,701,901...2,713,431
Ensembl chrNW_004955506:2,701,905...2,711,073
JBrowse link
heparin proteoglycan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idua alpha-L-iduronidase acts_upstream_of_or_within ISO (PMID:21873421)
(PMID:19751987)
(PMID:19834056)
MGI PMID:19751987 PMID:19834056 PMID:21873421 NCBI chrNW_004955514:474,830...488,007
Ensembl chrNW_004955514:475,731...488,007
JBrowse link
insulin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ceacam1 CEA cell adhesion molecule 1 involved_in ISO PMID:11850617
(PMID:18544705)
UniProt PMID:11850617 PMID:18544705 RGD:734645 NCBI chrNW_004955555:426,894...446,235 JBrowse link
G Ctsd cathepsin D involved_in ISO (PMID:27703010) MGI PMID:27703010 NCBI chrNW_004955422:13,576,315...13,584,267
Ensembl chrNW_004955422:13,576,202...13,584,298
JBrowse link
G Ide insulin degrading enzyme involved_in ISO (PMID:19321446), (PMID:9231799), (PMID:9830016)
(PMID:24847884)
(PMID:27703010)
UniProt
MGI
PMID:9231799 PMID:9830016 PMID:19321446 PMID:24847884 PMID:27703010 NCBI chrNW_004955425:819,461...926,440
Ensembl chrNW_004955425:847,615...926,318
JBrowse link
keratan sulfate proteoglycan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Glb1 galactosidase beta 1 involved_in ISO (PMID:31720227) FlyBase PMID:31720227 NCBI chrNW_004955421:230,957...311,504
Ensembl chrNW_004955421:231,076...312,500
JBrowse link
G Gns glucosamine (N-acetyl)-6-sulfatase ISO RGD PMID:3161730 RGD:1600571 NCBI chrNW_004955458:11,471,376...11,500,793
Ensembl chrNW_004955458:11,471,376...11,500,838
JBrowse link
lipoprotein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apob apolipoprotein B acts_upstream_of_or_within ISO (PMID:15863839) MGI PMID:15863839 NCBI chrNW_004955469:3,437,422...3,478,408
Ensembl chrNW_004955469:3,436,450...3,478,424
JBrowse link
G Apoe apolipoprotein E acts_upstream_of_or_within ISO (PMID:17720994) MGI PMID:17720994 NCBI chrNW_004955555:1,998,170...2,002,003
Ensembl chrNW_004955555:1,999,711...2,001,888
JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO (PMID:15863839) MGI PMID:15863839 NCBI chrNW_004955412:10,422,753...10,531,406
Ensembl chrNW_004955412:10,426,135...10,530,545
JBrowse link
G Ctsd cathepsin D involved_in ISO (PMID:16997486) ARUK-UCL PMID:16997486 NCBI chrNW_004955422:13,576,315...13,584,267
Ensembl chrNW_004955422:13,576,202...13,584,298
JBrowse link
G Ldlr low density lipoprotein receptor acts_upstream_of_or_within ISO (PMID:15741654)
(PMID:15805190), (PMID:9788969)
MGI PMID:9788969 PMID:15741654 PMID:15805190 NCBI chrNW_004955495:2,114,702...2,135,584
Ensembl chrNW_004955495:2,114,434...2,138,056
JBrowse link
G Lipa lipase A, lysosomal acid type acts_upstream_of_or_within ISO (PMID:33357458) MGI PMID:33357458 NCBI chrNW_004955425:3,718,291...3,755,942
Ensembl chrNW_004955425:3,718,206...3,756,142
JBrowse link
low-density lipoprotein particle receptor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcsk9 proprotein convertase subtilisin/kexin type 9 involved_in ISO (PMID:16912035), (PMID:18197702) HGNC-UCL PMID:16912035 PMID:18197702 NCBI chrNW_004955464:4,424,583...4,439,805
Ensembl chrNW_004955464:4,425,435...4,439,842
JBrowse link
lysosomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within ISO (PMID:30930081) MGI PMID:30930081 NCBI chrNW_004955460:10,997,554...11,009,435
Ensembl chrNW_004955460:10,996,796...11,009,525
JBrowse link
G Ccdc115 coiled-coil domain containing 115 involved_in ISO (PMID:28296633) UniProt PMID:28296633 NCBI chrNW_004955459:25,649...30,215
Ensembl chrNW_004955459:25,649...30,215
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:10527801), (PMID:17855597) UniProt PMID:10527801 PMID:17855597 NCBI chrNW_004955493:6,696,520...6,707,849
Ensembl chrNW_004955493:6,696,241...6,707,849
JBrowse link
G Cst7 cystatin F involved_in ISO (PMID:15752368), (PMID:22365146) ARUK-UCL PMID:15752368 PMID:22365146 NCBI chrNW_004955415:31,082,978...31,086,379
Ensembl chrNW_004955415:31,082,978...31,086,379
JBrowse link
G Ctsh cathepsin H involved_in ISO (PMID:15752368) ARUK-UCL PMID:15752368 NCBI chrNW_004955533:39,237...54,881
Ensembl chrNW_004955533:39,284...54,837
JBrowse link
G Dpp7 dipeptidyl peptidase 7 acts_upstream_of_or_within ISO (PMID:28728022) MGI PMID:28728022 NCBI chrNW_004955513:5,105,833...5,109,676
Ensembl chrNW_004955513:5,106,430...5,109,483
JBrowse link
G Grn granulin precursor acts_upstream_of_or_within ISO (PMID:28728022) MGI PMID:28728022 NCBI chrNW_004955451:17,368,600...17,371,981
Ensembl chrNW_004955451:17,368,428...17,372,377
JBrowse link
G Lamp2 lysosomal associated membrane protein 2 involved_in ISO (PMID:24880125) UniProt PMID:24880125 NCBI chrNW_004955572:1,423,048...1,464,443
Ensembl chrNW_004955572:1,422,981...1,462,622
JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within ISO (PMID:27654426) MGI PMID:27654426 NCBI chrNW_004955428:13,519,285...13,548,007
Ensembl chrNW_004955428:13,519,277...13,544,695
JBrowse link
G Mgat3 beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase acts_upstream_of ISO (PMID:25592972), (PMID:26467158) MGI PMID:25592972 PMID:26467158 NCBI chrNW_004955413:25,346,135...25,367,782
Ensembl chrNW_004955413:25,360,806...25,367,782
JBrowse link
G Psap prosaposin acts_upstream_of_or_within ISO (PMID:12813057) MGI PMID:12813057 NCBI chrNW_004955437:19,667,252...19,683,669 JBrowse link
G Slc17a9 solute carrier family 17 member 9 acts_upstream_of_or_within ISO (PMID:24962569) UniProt PMID:24962569 NCBI chrNW_004955528:1,124,430...1,139,476
Ensembl chrNW_004955528:1,124,437...1,139,476
JBrowse link
G Tmem106b transmembrane protein 106B acts_upstream_of_or_within ISO (PMID:28728022) MGI PMID:28728022 NCBI chrNW_004955432:18,619,418...18,644,876
Ensembl chrNW_004955432:18,619,413...18,639,151
JBrowse link
G Tmem199 transmembrane protein 199 involved_in ISO (PMID:28296633) UniProt PMID:28296633 NCBI chrNW_004955481:4,772,394...4,776,524
Ensembl chrNW_004955481:4,772,401...4,776,524
JBrowse link
G Tpp1 tripeptidyl peptidase 1 acts_upstream_of_or_within ISO (PMID:28728022) MGI PMID:28728022 NCBI chrNW_004955414:22,324,847...22,330,912
Ensembl chrNW_004955414:22,324,856...22,330,912
JBrowse link
G Vps13a vacuolar protein sorting 13 homolog A involved_in ISO (PMID:30709847) UniProt PMID:30709847 NCBI chrNW_004955512:2,037,803...2,267,197
Ensembl chrNW_004955512:2,039,115...2,267,099
JBrowse link
mannoprotein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edem1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in ISO (PMID:25092655) ParkinsonsUK-UCL PMID:25092655 NCBI chrNW_004955421:8,196,631...8,225,561
Ensembl chrNW_004955421:8,196,557...8,225,561
JBrowse link
G Edem2 ER degradation enhancing alpha-mannosidase like protein 2 involved_in ISO (PMID:25092655) ParkinsonsUK-UCL PMID:25092655 NCBI chrNW_004955422:26,243,034...26,271,849
Ensembl chrNW_004955422:26,242,986...26,273,297
JBrowse link
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 involved_in ISO (PMID:25092655)
(PMID:16431915)
ParkinsonsUK-UCL PMID:16431915 PMID:25092655 NCBI chrNW_004955406:23,329,400...23,401,282
Ensembl chrNW_004955406:23,329,400...23,401,281
JBrowse link
G Man1b1 mannosidase alpha class 1B member 1 involved_in ISO (PMID:18003979)
(PMID:10521544)
ParkinsonsUK-UCL PMID:10521544 PMID:18003979 NCBI chrNW_004955513:5,109,651...5,122,568
Ensembl chrNW_004955513:5,111,046...5,122,442
JBrowse link
mannose trimming involved in glycoprotein ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Man1a1 mannosidase alpha class 1A member 1 involved_in ISO (PMID:27108681) UniProt PMID:27108681 NCBI chrNW_004955436:1,830,275...1,972,861
Ensembl chrNW_004955436:1,830,211...1,935,970
JBrowse link
membrane protein proteolysis involved in retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hm13 histocompatibility minor 13 involved_in ISO (PMID:25239945) ParkinsonsUK-UCL PMID:25239945 NCBI chrNW_004955422:29,365,722...29,408,788
Ensembl chrNW_004955422:29,362,724...29,408,840
JBrowse link
G Rhbdd1 rhomboid domain containing 1 involved_in ISO (PMID:22795130) ParkinsonsUK-UCL PMID:22795130 NCBI chrNW_004955453:7,527,090...7,656,689
Ensembl chrNW_004955453:7,528,916...7,644,477
JBrowse link
mitochondrial protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afg1l AFG1 like ATPase involved_in ISO (PMID:26759378) UniProt PMID:26759378 NCBI chrNW_004955411:33,386,568...33,617,721
Ensembl chrNW_004955411:33,386,098...33,617,721
JBrowse link
G Bnip3 BCL2 interacting protein 3 involved_in ISO (PMID:22292033) UniProt PMID:22292033 NCBI chrNW_004955477:9,621,812...9,630,406
Ensembl chrNW_004955477:9,621,812...9,638,099
JBrowse link
G Bnip3l BCL2 interacting protein 3 like involved_in ISO (PMID:21264228) UniProt PMID:21264228 NCBI chrNW_004955403:49,122,408...49,144,162
Ensembl chrNW_004955403:49,122,408...49,144,998
JBrowse link
G Pisd phosphatidylserine decarboxylase involved_in ISO (PMID:30858161) UniProt PMID:30858161 NCBI chrNW_004955455:5,744,816...5,789,408
Ensembl chrNW_004955455:5,744,816...5,789,534
JBrowse link
G Spata18 spermatogenesis associated 18 involved_in ISO (PMID:21264221), (PMID:21264228) UniProt PMID:21264221 PMID:21264228 NCBI chrNW_004955447:18,401,881...18,437,878 JBrowse link
G Yme1l1 YME1 like 1 ATPase involved_in ISO (PMID:27495975), (PMID:27786171) UniProt PMID:27495975 PMID:27786171 NCBI chrNW_004955429:2,550,611...2,572,472
Ensembl chrNW_004955429:2,549,954...2,572,889
JBrowse link
mitochondrial protein quality control term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afg1l AFG1 like ATPase involved_in ISO (PMID:27323408) UniProt PMID:27323408 NCBI chrNW_004955411:33,386,568...33,617,721
Ensembl chrNW_004955411:33,386,098...33,617,721
JBrowse link
G Afg3l2 AFG3 like matrix AAA peptidase subunit 2 involved_in ISO (PMID:26504172), (PMID:30683687), (PMID:34718584) UniProt PMID:26504172 PMID:30683687 PMID:34718584 NCBI chrNW_004955402:1,037,414...1,069,165
Ensembl chrNW_004955402:1,037,402...1,069,165
JBrowse link
G Oxa1l OXA1L mitochondrial inner membrane protein involved_in ISO (PMID:38199007) UniProt PMID:38199007 NCBI chrNW_004955409:37,513,925...37,519,250
Ensembl chrNW_004955409:37,514,177...37,519,376
JBrowse link
G Tmem126a transmembrane protein 126A involved_in ISO (PMID:38199007) UniProt PMID:38199007 NCBI chrNW_004955414:7,214,408...7,224,499
Ensembl chrNW_004955414:7,216,286...7,224,475
JBrowse link
modification-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isg15 ISG15 ubiquitin like modifier acts_upstream_of_or_within ISO (PMID:15485925) MGI PMID:15485925 NCBI chrNW_004955486:9,706,878...9,707,876
Ensembl chrNW_004955486:9,706,703...9,707,949
JBrowse link
G Uba7 ubiquitin like modifier activating enzyme 7 acts_upstream_of_or_within ISO (PMID:15485925) MGI PMID:15485925 NCBI chrNW_004955532:1,697,667...1,706,668
Ensembl chrNW_004955532:1,695,956...1,706,676
JBrowse link
G Ube2l6 ubiquitin conjugating enzyme E2 L6 acts_upstream_of_or_within ISO (PMID:15485925) MGI PMID:15485925 NCBI chrNW_004955511:2,522,850...2,528,926
Ensembl chrNW_004955511:2,522,850...2,528,926
JBrowse link
negative regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsa cathepsin A involved_in ISO (PMID:12505983) ParkinsonsUK-UCL PMID:12505983 NCBI chrNW_004955445:11,399,151...11,405,069
Ensembl chrNW_004955445:11,399,151...11,405,069
JBrowse link
G Snca synuclein alpha involved_in ISO (PMID:20697033) ParkinsonsUK-UCL PMID:20697033 NCBI chrNW_004955405:854,011...962,741
Ensembl chrNW_004955405:853,946...965,403
JBrowse link
negative regulation of elastin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cst3 cystatin C involved_in ISO (PMID:10545518) BHF-UCL PMID:10545518 NCBI chrNW_004955415:30,507,972...30,512,109 JBrowse link
negative regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp11 aquaporin 11 involved_in ISO (PMID:18606867) UniProt PMID:18606867 NCBI chrNW_004955414:14,245,682...14,260,717
Ensembl chrNW_004955414:14,245,682...14,260,717
JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISO (PMID:23129660) UniProt PMID:23129660 NCBI chrNW_004955495:5,025,038...5,051,810
Ensembl chrNW_004955495:5,031,229...5,052,389
JBrowse link
G Svip small VCP interacting protein involved_in ISO PMID:17000876
(PMID:17872946)
ParkinsonsUK-UCL
UniProt
PMID:17000876 PMID:17872946 RGD:10047192 NCBI chrNW_004955476:3,231,789...3,236,602 JBrowse link
G Ubxn1 UBX domain protein 1 involved_in ISO (PMID:21135095) ParkinsonsUK-UCL PMID:21135095 NCBI chrNW_004955599:526,792...529,825
Ensembl chrNW_004955599:526,966...529,735
JBrowse link
G Ubxn2a UBX domain protein 2A involved_in ISO (PMID:26265139) UniProt PMID:26265139 NCBI chrNW_004955469:6,173,524...6,214,568
Ensembl chrNW_004955469:6,173,524...6,214,568
JBrowse link
G Usp14 ubiquitin specific peptidase 14 involved_in ISO (PMID:19135427) ParkinsonsUK-UCL PMID:19135427 NCBI chrNW_004955402:9,710,080...9,737,601
Ensembl chrNW_004955402:9,710,080...9,743,077
JBrowse link
G Usp25 ubiquitin specific peptidase 25 involved_in ISO (PMID:22590560) ParkinsonsUK-UCL PMID:22590560 NCBI chrNW_004955407:17,429,299...17,572,138
Ensembl chrNW_004955407:17,429,299...17,575,262
JBrowse link
negative regulation of low-density lipoprotein particle receptor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa2 annexin A2 involved_in ISO (PMID:22848640) BHF-UCL PMID:22848640 NCBI chrNW_004955450:14,545,586...14,574,161
Ensembl chrNW_004955450:14,512,381...14,574,696
JBrowse link
G Furin furin, paired basic amino acid cleaving enzyme involved_in ISO (PMID:16912035) HGNC-UCL PMID:16912035 NCBI chrNW_004955416:14,915,031...14,947,634
Ensembl chrNW_004955416:14,936,546...14,949,252
JBrowse link
negative regulation of lysosomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Laptm4b lysosomal protein transmembrane 4 beta involved_in ISO (PMID:25588945) UniProt PMID:25588945 NCBI chrNW_004955417:13,574,493...13,625,669
Ensembl chrNW_004955417:13,574,721...13,625,313
JBrowse link
G Mgat3 beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO (PMID:25592972), (PMID:26467158) MGI PMID:25592972 PMID:26467158 NCBI chrNW_004955413:25,346,135...25,367,782
Ensembl chrNW_004955413:25,360,806...25,367,782
JBrowse link
G Usp8 ubiquitin specific peptidase 8 involved_in ISO (PMID:27444016) FlyBase PMID:27444016 NCBI chrNW_004955409:3,839,308...3,903,595
Ensembl chrNW_004955409:3,840,007...3,891,284
JBrowse link
G Vps35 VPS35 retromer complex component involved_in ISO (PMID:26203154) ParkinsonsUK-UCL PMID:26203154 NCBI chrNW_004955448:207,582...240,264
Ensembl chrNW_004955448:204,991...240,160
JBrowse link
negative regulation of membrane protein ectodomain proteolysis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il10 interleukin 10 involved_in ISO (PMID:18383040) BHF-UCL PMID:18383040 NCBI chrNW_004955406:42,307,789...42,312,255
Ensembl chrNW_004955406:42,307,664...42,312,779
JBrowse link
G Lrig2 leucine rich repeats and immunoglobulin like domains 2 acts_upstream_of_or_within ISO (PMID:26651291) MGI PMID:26651291 NCBI chrNW_004955435:16,468,300...16,522,503
Ensembl chrNW_004955435:16,468,509...16,521,868
JBrowse link
G Ptpn3 protein tyrosine phosphatase non-receptor type 3 involved_in ISO (PMID:12207026) BHF-UCL PMID:12207026 NCBI chrNW_004955419:17,560,664...17,645,420
Ensembl chrNW_004955419:17,493,518...17,645,477
JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 involved_in ISO (PMID:12714508) UniProt PMID:12714508 NCBI chrNW_004955516:507,113...511,360
Ensembl chrNW_004955516:505,789...512,118
JBrowse link
G Timp3 TIMP metallopeptidase inhibitor 3 involved_in ISO (PMID:18383040) BHF-UCL PMID:18383040 NCBI chrNW_004955405:41,613,976...41,655,813
Ensembl chrNW_004955405:41,613,966...41,655,813
JBrowse link
negative regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase involved_in ISO (PMID:8175643) CAFA PMID:8175643 NCBI chrNW_004955419:14,093,010...14,104,376
Ensembl chrNW_004955419:14,093,010...14,104,545
JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in ISO (PMID:21669198) BHF-UCL PMID:21669198 NCBI chrNW_004955484:1,991,020...2,004,925
Ensembl chrNW_004955484:1,991,020...2,004,925
JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 involved_in ISO PMID:17517623
(PMID:17517623)
ARUK-UCL PMID:17517623 RGD:13514081 NCBI chrNW_004955437:9,872,649...9,878,459
Ensembl chrNW_004955437:9,873,908...9,878,459
JBrowse link
G Lamp3 lysosomal associated membrane protein 3 involved_in ISO (PMID:25681212) ParkinsonsUK-UCL PMID:25681212 NCBI chrNW_004955420:24,155,793...24,185,366 JBrowse link
G LOC102030058 protein SCO1 homolog, mitochondrial acts_upstream_of_or_within ISO (PMID:25683716) MGI PMID:25683716 NCBI chrNW_004955467:6,519,873...6,535,321
Ensembl chrNW_004955467:6,519,873...6,537,753
JBrowse link
G Marchf7 membrane associated ring-CH-type finger 7 involved_in ISO (PMID:29295817) UniProt PMID:29295817 NCBI chrNW_004955449:13,834,561...13,875,864
Ensembl chrNW_004955449:13,835,811...13,859,699
JBrowse link
G Ophn1 oligophrenin 1 involved_in ISO (PMID:21874017) UniProt PMID:21874017 NCBI chrNW_004955475:7,576,629...8,019,132
Ensembl chrNW_004955475:7,581,675...8,018,139
JBrowse link
G Prkcg protein kinase C gamma involved_in ISO (PMID:23185022) UniProt PMID:23185022 NCBI chrNW_004955604:262,182...279,259
Ensembl chrNW_004955604:262,071...279,259
JBrowse link
G Psme3ip1 proteasome activator subunit 3 interacting protein 1 involved_in ISO (PMID:29934401) UniProt PMID:29934401 NCBI chrNW_004955433:14,813,688...14,843,446
Ensembl chrNW_004955433:14,813,688...14,843,223
JBrowse link
G Psmf1 proteasome inhibitor subunit 1 involved_in ISO (PMID:10764772) UniProt PMID:10764772 NCBI chrNW_004955596:381,080...414,307
Ensembl chrNW_004955596:381,068...416,055
JBrowse link
G Usp19 ubiquitin specific peptidase 19 involved_in ISO (PMID:25088257) ParkinsonsUK-UCL PMID:25088257 NCBI chrNW_004955532:1,104,212...1,115,267
Ensembl chrNW_004955532:1,104,591...1,113,567
JBrowse link
negative regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag5 BAG cochaperone 5 involved_in ISO (PMID:24475098) ParkinsonsUK-UCL PMID:24475098 NCBI chrNW_004955538:2,412,297...2,416,094
Ensembl chrNW_004955538:2,412,297...2,415,132
JBrowse link
G Bag6 BAG cochaperone 6 involved_in ISO (PMID:18678708) UniProt PMID:18678708 NCBI chrNW_004955437:176,848...188,243
Ensembl chrNW_004955437:176,797...188,003
JBrowse link
G Camlg calcium modulating ligand involved_in ISO (PMID:20553626) UniProt PMID:20553626 NCBI chrNW_004955408:29,968,962...29,977,896
Ensembl chrNW_004955408:29,968,934...29,979,794
JBrowse link
G Ccar2 cell cycle and apoptosis regulator 2 involved_in ISO (PMID:23398316) UniProt PMID:23398316 NCBI chrNW_004955403:46,027,997...46,042,154
Ensembl chrNW_004955403:46,027,998...46,042,154
JBrowse link
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chrNW_004955442:7,369,616...7,584,052
Ensembl chrNW_004955442:7,368,952...7,584,703
JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chrNW_004955597:326,601...397,112 JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chrNW_004955433:15,677,788...15,718,894
Ensembl chrNW_004955433:15,674,116...15,718,894
JBrowse link
G Csnk2b casein kinase 2 beta involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chrNW_004955437:210,541...215,725
Ensembl chrNW_004955437:210,838...219,694
JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:28263186) UniProt PMID:28263186 NCBI chrNW_004955415:14,085,404...14,098,220
Ensembl chrNW_004955415:14,085,404...14,098,856
JBrowse link
G Eif3h eukaryotic translation initiation factor 3 subunit H involved_in ISO (PMID:32269044) FlyBase PMID:32269044 NCBI chrNW_004955417:22,757,781...22,846,349
Ensembl chrNW_004955417:22,754,395...22,846,618
JBrowse link
G Fhit fragile histidine triad diadenosine triphosphatase involved_in ISO (PMID:15313915) UniProt PMID:15313915 NCBI chrNW_004955430:221,518...508,094 JBrowse link
G Gipc1 GIPC PDZ domain containing family member 1 involved_in ISO (PMID:11546783) BHF-UCL PMID:11546783 NCBI chrNW_004955415:33,067,689...33,077,749
Ensembl chrNW_004955415:33,067,689...33,074,730
JBrowse link
G Hfe homeostatic iron regulator involved_in ISO (PMID:24904118) BHF-UCL PMID:24904118 NCBI chrNW_004955483:933,269...941,070
Ensembl chrNW_004955483:932,352...941,143
JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 involved_in ISO (PMID:24613385) UniProt PMID:24613385 NCBI chrNW_004955437:9,872,649...9,878,459
Ensembl chrNW_004955437:9,873,908...9,878,459
JBrowse link
G Klhl40 kelch like family member 40 acts_upstream_of_or_within ISO (PMID:24960163) MGI PMID:24960163 NCBI chrNW_004955420:28,117,553...28,122,391
Ensembl chrNW_004955420:28,117,898...28,122,270
JBrowse link
G Map1a microtubule associated protein 1A involved_in ISO (PMID:26609151) ARUK-UCL PMID:26609151 NCBI chrNW_004955416:10,052,964...10,073,318
Ensembl chrNW_004955416:10,053,010...10,071,421
JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of_or_within ISO (PMID:23695157) MGI PMID:23695157 NCBI chrNW_004955498:6,329,402...6,444,708
Ensembl chrNW_004955498:6,329,275...6,445,169
JBrowse link
G N4bp1 NEDD4 binding protein 1 involved_in ISO (PMID:17592138) UniProt PMID:17592138 NCBI chrNW_004955474:6,796,068...6,814,906
Ensembl chrNW_004955474:6,796,066...6,814,906
JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:22522597) UniProt PMID:22522597 NCBI chrNW_004955574:1,505,997...1,514,680
Ensembl chrNW_004955574:1,506,022...1,517,130
JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in ISO (PMID:26678539) UniProt PMID:26678539 NCBI chrNW_004955475:11,062,258...11,112,252
Ensembl chrNW_004955475:11,062,076...11,114,169
JBrowse link
G Park7 Parkinsonism associated deglycase acts_upstream_of ISO (PMID:17015834) ParkinsonsUK-UCL PMID:17015834 NCBI chrNW_004955486:4,974,130...4,985,927
Ensembl chrNW_004955486:4,969,497...4,985,885
JBrowse link
G Pbk PDZ binding kinase acts_upstream_of_or_within ISO (PMID:21715333) MGI PMID:21715333 NCBI chrNW_004955403:50,332,167...50,353,147
Ensembl chrNW_004955403:50,330,981...50,352,570
JBrowse link
G Phf20l1 PHD finger protein 20 like 1 involved_in ISO (PMID:24492612) UniProt PMID:24492612 NCBI chrNW_004955461:7,391,175...7,465,012
Ensembl chrNW_004955461:7,391,175...7,465,012
JBrowse link
G Rgs19 regulator of G protein signaling 19 involved_in ISO (PMID:11546783) BHF-UCL PMID:11546783 NCBI chrNW_004955528:183,067...185,703
Ensembl chrNW_004955528:183,066...185,703
JBrowse link
G Rpl11 ribosomal protein L11 involved_in ISO (PMID:21804542) UniProt PMID:21804542 NCBI chrNW_004955452:3,626,609...3,630,911
Ensembl chrNW_004955452:3,626,609...3,633,209
JBrowse link
G Rybp RING1 and YY1 binding protein involved_in ISO (PMID:27060496) UniProt PMID:27060496 NCBI chrNW_004955421:15,728,778...15,803,150
Ensembl chrNW_004955421:15,728,580...15,803,150
JBrowse link
G Senp1 SUMO specific peptidase 1 acts_upstream_of_or_within ISO (PMID:17981124) MGI PMID:17981124 NCBI chrNW_004955500:6,924,445...6,978,482
Ensembl chrNW_004955500:6,926,548...6,979,230
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:16611981) MGI PMID:16611981 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Smarcc1 SWI/SNF related BAF chromatin remodeling complex subunit C1 acts_upstream_of_or_within ISO (PMID:22285184) MGI PMID:22285184 NCBI chrNW_004955420:24,594,057...24,729,108
Ensembl chrNW_004955420:24,593,830...24,729,108
JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in ISO (PMID:11278372) BHF-UCL PMID:11278372 NCBI chrNW_004955575:74,506...76,272
Ensembl chrNW_004955575:74,506...76,272
JBrowse link
G Tlk2 tousled like kinase 2 involved_in ISO (PMID:20016786) UniProt PMID:20016786 NCBI chrNW_004955478:9,100,863...9,229,448
Ensembl chrNW_004955478:9,100,863...9,231,281
JBrowse link
G Ttc36 tetratricopeptide repeat domain 36 acts_upstream_of_or_within ISO (PMID:31537781) MGI PMID:31537781 NCBI chrNW_004955412:19,670,590...19,672,495 JBrowse link
G Ubxn1 UBX domain protein 1 involved_in ISO (PMID:20351172) UniProt PMID:20351172 NCBI chrNW_004955599:526,792...529,825
Ensembl chrNW_004955599:526,966...529,735
JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in ISO (PMID:23770237) UniProt PMID:23770237 NCBI chrNW_004955406:30,432,652...30,468,741 JBrowse link
G Usp26 ubiquitin specific peptidase 26 involved_in ISO (PMID:28839133) UniProt PMID:28839133 NCBI chrNW_004955473:1,903,865...1,957,747 JBrowse link
G Usp38 ubiquitin specific peptidase 38 involved_in ISO (PMID:34102342) UniProt PMID:34102342 NCBI chrNW_004955471:316,319...350,982
Ensembl chrNW_004955471:315,779...350,982
JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in ISO (PMID:26678539) UniProt PMID:26678539 NCBI chrNW_004955442:9,316,022...9,355,751
Ensembl chrNW_004955442:9,315,225...9,356,393
JBrowse link
G Usp9x ubiquitin specific peptidase 9 X-linked involved_in ISO (PMID:33378666) UniProt PMID:33378666 NCBI chrNW_004955565:1,479,040...1,602,070
Ensembl chrNW_004955565:1,479,040...1,602,070
JBrowse link
G Wac WW domain containing adaptor with coiled-coil involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chrNW_004955462:2,358,842...2,435,644
Ensembl chrNW_004955462:2,358,842...2,435,628
JBrowse link
negative regulation of protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrb1 adhesion G protein-coupled receptor B1 involved_in ISO (PMID:25751059) UniProt PMID:25751059 NCBI chrNW_004955454:1,250,261...1,313,547
Ensembl chrNW_004955454:1,237,363...1,314,127
JBrowse link
G Agap2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 acts_upstream_of_or_within ISO (PMID:18374643) MGI PMID:18374643 NCBI chrNW_004955458:5,436,544...5,448,201
Ensembl chrNW_004955458:5,436,630...5,448,057
JBrowse link
G Atraid all-trans retinoic acid induced differentiation factor involved_in ISO (PMID:21723284) UniProt PMID:21723284 NCBI chrNW_004955469:9,194,656...9,203,292 JBrowse link
G Azin1 antizyme inhibitor 1 involved_in ISO downregulates antizyme degradation of ODC
(PMID:17900240)
RGD
UniProt
PMID:8631929 PMID:17900240 RGD:633334 NCBI chrNW_004955417:27,231,695...27,259,564
Ensembl chrNW_004955417:27,231,696...27,259,564
JBrowse link
G Azin2 antizyme inhibitor 2 involved_in ISO (PMID:17900240) UniProt PMID:17900240 NCBI chrNW_004955452:11,304,345...11,330,370
Ensembl chrNW_004955452:11,303,499...11,330,555
JBrowse link
G Cdk2 cyclin dependent kinase 2 involved_in ISO (PMID:15750306) AgBase PMID:15750306 NCBI chrNW_004955458:3,555,603...3,561,063
Ensembl chrNW_004955458:3,555,603...3,562,120
JBrowse link
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 involved_in ISO (PMID:16173922) UniProt PMID:16173922 NCBI chrNW_004955451:13,160,811...13,170,012
Ensembl chrNW_004955451:13,120,761...13,170,073
JBrowse link
G Dab2ip DAB2 interacting protein involved_in ISO (PMID:19903888) UniProt PMID:19903888 NCBI chrNW_004955419:6,229,437...6,416,619
Ensembl chrNW_004955419:6,228,591...6,416,402
JBrowse link
G Dedd death effector domain containing acts_upstream_of_or_within ISO (PMID:21135503) MGI PMID:21135503 NCBI chrNW_004955468:12,885,547...12,897,522
Ensembl chrNW_004955468:12,885,553...12,897,164
JBrowse link
G Dysf dysferlin acts_upstream_of_or_within ISO (PMID:20724702) MGI PMID:20724702 NCBI chrNW_004955424:13,756,130...13,970,437
Ensembl chrNW_004955424:13,756,130...13,970,436
JBrowse link
G Egfr epidermal growth factor receptor involved_in ISO (PMID:17115032) UniProt PMID:17115032 NCBI chrNW_004955456:321,222...456,431 JBrowse link
G Fbxo43 F-box protein 43 acts_upstream_of_or_within ISO (PMID:16966421) MGI PMID:16966421 NCBI chrNW_004955417:15,394,481...15,406,751
Ensembl chrNW_004955417:15,390,969...15,406,751
JBrowse link
G Flna filamin A involved_in ISO (PMID:18322202) BHF-UCL PMID:18322202 NCBI chrNW_004955580:874,233...895,172
Ensembl chrNW_004955580:874,233...895,232
JBrowse link
G Fmn2 formin 2 involved_in ISO (PMID:23375502) UniProt PMID:23375502 NCBI chrNW_004955406:11,358,585...11,666,102 JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase acts_upstream_of_or_within ISO (PMID:16841086) MGI PMID:16841086 NCBI chrNW_004955411:36,403,156...36,597,660
Ensembl chrNW_004955411:36,401,842...36,512,054
JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A acts_upstream_of_or_within ISO (PMID:15317856) MGI PMID:15317856 NCBI chrNW_004955442:8,171,114...8,565,187
Ensembl chrNW_004955442:8,174,232...8,562,059
JBrowse link
G Grin2c glutamate ionotropic receptor NMDA type subunit 2C acts_upstream_of_or_within ISO (PMID:15317856) MGI PMID:15317856 NCBI chrNW_004955553:1,729,431...1,746,754
Ensembl chrNW_004955553:1,729,860...1,737,751
JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase involved_in ISO (PMID:20876579) ARUK-UCL PMID:20876579 NCBI chrNW_004955425:25,362,165...25,380,611
Ensembl chrNW_004955425:25,359,884...25,380,745
JBrowse link
G Ins insulin involved_in ISO (PMID:15185208) UniProt PMID:15185208 NCBI chrNW_004955422:13,909,408...13,910,419
Ensembl chrNW_004955422:13,909,407...13,910,419
JBrowse link
G Irak3 interleukin 1 receptor associated kinase 3 involved_in ISO (PMID:17379480), (PMID:18156187) BHF-UCL PMID:17379480 PMID:18156187 NCBI chrNW_004955458:12,839,995...12,880,285
Ensembl chrNW_004955458:12,846,237...12,879,316
JBrowse link
G LOC102027002 lanosterol 14-alpha demethylase involved_in ISO (PMID:20876579) ARUK-UCL PMID:20876579 NCBI chrNW_004955432:9,092,923...9,112,615
Ensembl chrNW_004955432:9,092,933...9,112,615
JBrowse link
G Mad2l1 mitotic arrest deficient 2 like 1 involved_in ISO (PMID:11459825) UniProt PMID:11459825 NCBI chrNW_004955428:20,421,718...20,443,394
Ensembl chrNW_004955428:20,421,723...20,430,307
JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 involved_in ISO (PMID:11459826) UniProt PMID:11459826 NCBI chrNW_004955486:2,191,903...2,197,193
Ensembl chrNW_004955486:2,191,903...2,198,538
JBrowse link
G Mdm4 MDM4 regulator of p53 involved_in ISO (PMID:10608892) UniProt PMID:10608892 NCBI chrNW_004955406:40,346,617...40,387,977
Ensembl chrNW_004955406:40,346,588...40,387,977
JBrowse link
G Mycbp2 MYC binding protein 2 acts_upstream_of_or_within ISO (PMID:19398581) MGI PMID:19398581 NCBI chrNW_004955404:29,932,125...30,186,236
Ensembl chrNW_004955404:29,932,125...30,186,236
JBrowse link
G Nell1 neural EGFL like 1 involved_in ISO (PMID:21723284) UniProt PMID:21723284 NCBI chrNW_004955476:1,445,234...2,236,954
Ensembl chrNW_004955476:1,445,353...2,233,146
JBrowse link
G Nos2 nitric oxide synthase 2 involved_in ISO (PMID:18003616) BHF-UCL PMID:18003616 NCBI chrNW_004955481:5,197,957...5,232,406
Ensembl chrNW_004955481:5,201,234...5,231,961
JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 involved_in ISO (PMID:15687255) UniProt PMID:15687255 NCBI chrNW_004955484:7,012,373...7,028,182
Ensembl chrNW_004955484:7,012,506...7,027,604
JBrowse link
G Nrg1 neuregulin 1 acts_upstream_of_or_within ISO (PMID:20448149) MGI PMID:20448149 NCBI chrNW_004955463:8,009,436...9,037,116
Ensembl chrNW_004955463:8,009,530...9,037,116
JBrowse link
G Park7 Parkinsonism associated deglycase involved_in ISO (PMID:24899725) ParkinsonsUK-UCL PMID:24899725 NCBI chrNW_004955486:4,974,130...4,985,927
Ensembl chrNW_004955486:4,969,497...4,985,885
JBrowse link
G Phb1 prohibitin 1 involved_in ISO (PMID:24732013) UniProt PMID:24732013 NCBI chrNW_004955451:12,110,290...12,119,870
Ensembl chrNW_004955451:12,110,290...12,120,124
JBrowse link
G Phf20l1 PHD finger protein 20 like 1 involved_in ISO (PMID:29358331) UniProt PMID:29358331 NCBI chrNW_004955461:7,391,175...7,465,012
Ensembl chrNW_004955461:7,391,175...7,465,012
JBrowse link
G Pin1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 involved_in ISO (PMID:11533658) ParkinsonsUK-UCL PMID:11533658 NCBI chrNW_004955495:1,250,557...1,261,617
Ensembl chrNW_004955495:1,250,453...1,266,235
JBrowse link
G Prkcg protein kinase C gamma involved_in ISO (PMID:15808853) HGNC-UCL PMID:15808853 NCBI chrNW_004955604:262,182...279,259
Ensembl chrNW_004955604:262,071...279,259
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit acts_upstream_of_or_within ISO (PMID:15923614) MGI PMID:15923614 NCBI chrNW_004955422:19,602,930...19,612,263
Ensembl chrNW_004955422:19,603,345...19,611,516
JBrowse link
G Rgp1 RGP1 homolog, RAB6A GEF complex partner 1 involved_in ISO (PMID:23091056) UniProt PMID:23091056 NCBI chrNW_004955472:550,198...554,038
Ensembl chrNW_004955472:550,198...554,038
JBrowse link
G Ric1 RIC1 homolog, RAB6A GEF complex partner 1 involved_in ISO (PMID:23091056) UniProt PMID:23091056 NCBI chrNW_004955434:9,675,654...9,770,174
Ensembl chrNW_004955434:9,675,654...9,770,174
JBrowse link
G Rilp Rab interacting lysosomal protein involved_in ISO (PMID:17010938) UniProt PMID:17010938 NCBI chrNW_004955481:1,531,175...1,534,794
Ensembl chrNW_004955481:1,531,574...1,534,443
JBrowse link
G Serpine2 serpin family E member 2 acts_upstream_of_or_within ISO (PMID:15509762)
(PMID:16319172)
MGI PMID:15509762 PMID:16319172 NCBI chrNW_004955453:10,049,822...10,076,155
Ensembl chrNW_004955453:10,027,104...10,076,645
JBrowse link
G Sf3b3 splicing factor 3b subunit 3 involved_in ISO (PMID:23951410) CACAO PMID:23951410 NCBI chrNW_004955484:3,307,794...3,357,600
Ensembl chrNW_004955484:3,307,794...3,357,600
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:16611981) MGI PMID:16611981 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Sirt2 sirtuin 2 involved_in ISO (PMID:20543840) UniProt PMID:20543840 NCBI chrNW_004955468:626,365...644,441
Ensembl chrNW_004955468:626,365...644,441
JBrowse link
G Smad3 SMAD family member 3 involved_in ISO PMID:16690606
PMID:20097766
CACAO
BHF-UCL
PMID:16690606 PMID:20097766 RGD:11079190 RGD:15023472 NCBI chrNW_004955450:8,747,651...8,842,003
Ensembl chrNW_004955450:8,747,651...8,842,136
JBrowse link
G Smad4 SMAD family member 4 involved_in ISO PMID:20097766 BHF-UCL PMID:20097766 RGD:11079190 NCBI chrNW_004955402:35,956,080...36,001,746
Ensembl chrNW_004955402:35,961,165...35,994,538
JBrowse link
G Snx12 sorting nexin 12 involved_in ISO (PMID:22719997) UniProt PMID:22719997 NCBI chrNW_004955475:10,632,938...10,641,452
Ensembl chrNW_004955475:10,474,697...10,641,723
JBrowse link
G Snx3 sorting nexin 3 involved_in ISO (PMID:18767904) UniProt PMID:18767904 NCBI chrNW_004955411:33,339,974...33,344,563
Ensembl chrNW_004955411:33,340,274...33,345,500
JBrowse link
G Tmem132a transmembrane protein 132A acts_upstream_of_or_within ISO (PMID:33324648) MGI PMID:33324648 NCBI chrNW_004955511:5,567,413...5,574,759
Ensembl chrNW_004955511:5,567,415...5,574,522
JBrowse link
G Trim40 tripartite motif containing 40 involved_in ISO (PMID:21474709) UniProt PMID:21474709 NCBI chrNW_004955583:242,054...260,565
Ensembl chrNW_004955583:242,054...259,008
JBrowse link
negative regulation of proteolysis involved in protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Efna1 ephrin A1 involved_in ISO (PMID:24217950) ARUK-UCL PMID:24217950 NCBI chrNW_004955545:1,610,929...1,617,217
Ensembl chrNW_004955545:1,610,929...1,617,460
JBrowse link
G Epha4 EPH receptor A4 involved_in ISO (PMID:24217950) ARUK-UCL PMID:24217950 NCBI chrNW_004955453:12,099,800...12,240,199
Ensembl chrNW_004955453:12,099,757...12,240,199
JBrowse link
G Ufsp2 UFM1 specific peptidase 2 involved_in ISO (PMID:36543799) UniProt PMID:36543799 NCBI chrNW_004955403:23,634,967...23,655,429
Ensembl chrNW_004955403:23,634,924...23,655,429
JBrowse link
negative regulation of retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Derl2 derlin 2 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004955467:10,824,922...10,837,408
Ensembl chrNW_004955467:10,825,341...10,837,328
JBrowse link
G Derl3 derlin 3 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004955455:8,415,868...8,418,753
Ensembl chrNW_004955455:8,415,839...8,421,762
JBrowse link
G Erlec1 endoplasmic reticulum lectin 1 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004955441:19,535,425...19,557,960
Ensembl chrNW_004955441:19,535,425...19,557,458
JBrowse link
G Os9 OS9 endoplasmic reticulum lectin involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004955458:5,407,709...5,432,646
Ensembl chrNW_004955458:5,407,739...5,432,085
JBrowse link
G Svip small VCP interacting protein involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004955476:3,231,789...3,236,602 JBrowse link
G Ubac2 UBA domain containing 2 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004955404:11,205,972...11,357,370
Ensembl chrNW_004955404:11,205,585...11,357,370
JBrowse link
G Ube2g2 ubiquitin conjugating enzyme E2 G2 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004955407:41,683,771...41,724,014
Ensembl chrNW_004955407:41,683,720...41,724,014
JBrowse link
G Ube2j1 ubiquitin conjugating enzyme E2 J1 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004955411:16,076,647...16,091,554
Ensembl chrNW_004955411:16,074,551...16,091,570
JBrowse link
negative regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pabpn1l PABPN1 like, cytoplasmic acts_upstream_of_or_within ISO (PMID:32558204) MGI PMID:32558204 NCBI chrNW_004955541:2,718,076...2,720,322
Ensembl chrNW_004955541:2,718,076...2,720,322
JBrowse link
G Styx serine/threonine/tyrosine interacting protein involved_in ISO (PMID:28007894) UniProt PMID:28007894 NCBI chrNW_004955409:10,428,556...10,445,384
Ensembl chrNW_004955409:10,428,556...10,445,880
JBrowse link
negative regulation of ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anks1a ankyrin repeat and sterile alpha motif domain containing 1A acts_upstream_of_or_within ISO (PMID:20100865) MGI PMID:20100865 NCBI chrNW_004955437:2,916,598...3,070,771
Ensembl chrNW_004955437:2,916,598...3,070,771
JBrowse link
G Hfe homeostatic iron regulator involved_in ISO (PMID:24904118) BHF-UCL PMID:24904118 NCBI chrNW_004955483:933,269...941,070
Ensembl chrNW_004955483:932,352...941,143
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:21628596) FlyBase PMID:21628596 NCBI chrNW_004955494:3,365,826...3,554,735
Ensembl chrNW_004955494:3,393,049...3,554,844
JBrowse link
G Pdcl3 phosducin like 3 acts_upstream_of_or_within ISO (PMID:23792958) MGI PMID:23792958 NCBI chrNW_004955470:6,553,450...6,563,814 JBrowse link
G Pml PML nuclear body scaffold involved_in ISO (PMID:15195100) UniProt PMID:15195100 NCBI chrNW_004955450:3,654,854...3,692,057
Ensembl chrNW_004955450:3,656,498...3,692,406
JBrowse link
G Prmt6 protein arginine methyltransferase 6 involved_in ISO (PMID:26070566) UniProt PMID:26070566 NCBI chrNW_004955435:10,816,787...10,818,047
Ensembl chrNW_004955435:10,816,831...10,817,961
JBrowse link
G Psen1 presenilin 1 involved_in ISO (PMID:20208556) BHF-UCL PMID:20208556 NCBI chrNW_004955523:2,128,529...2,210,737
Ensembl chrNW_004955523:2,128,529...2,210,737
JBrowse link
G Psen2 presenilin 2 involved_in ISO (PMID:20208556) BHF-UCL PMID:20208556 NCBI chrNW_004955406:5,727,367...5,748,798
Ensembl chrNW_004955406:5,727,367...5,752,234
JBrowse link
G Qrich2 glutamine rich 2 involved_in ISO (PMID:30683861) UniProt PMID:30683861 NCBI chrNW_004955506:5,990,070...6,015,808 JBrowse link
G Rpl11 ribosomal protein L11 involved_in ISO (PMID:18560357) CAFA PMID:18560357 NCBI chrNW_004955452:3,626,609...3,630,911
Ensembl chrNW_004955452:3,626,609...3,633,209
JBrowse link
G Rpl23 ribosomal protein L23 involved_in ISO (PMID:15314173) CAFA PMID:15314173 NCBI chrNW_004955451:13,892,880...13,898,079
Ensembl chrNW_004955451:13,892,880...13,898,079
JBrowse link
G Rpl5 ribosomal protein L5 involved_in ISO (PMID:18560357) CAFA PMID:18560357 NCBI chrNW_004955423:1,748,809...1,758,622
Ensembl chrNW_004955423:1,748,809...1,758,622
JBrowse link
G Rps7 ribosomal protein S7 involved_in ISO (PMID:17310983) CAFA PMID:17310983 NCBI chrNW_004955487:3,793,168...3,798,007
Ensembl chrNW_004955487:3,792,870...3,798,153
JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISO (PMID:23129660) UniProt PMID:23129660 NCBI chrNW_004955495:5,025,038...5,051,810
Ensembl chrNW_004955495:5,031,229...5,052,389
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO (PMID:19684112) MGI PMID:19684112 NCBI chrNW_004955485:7,805,244...7,925,414
Ensembl chrNW_004955485:7,808,131...7,925,677
JBrowse link
G Svip small VCP interacting protein involved_in ISO PMID:17000876 ParkinsonsUK-UCL PMID:17000876 RGD:10047192 NCBI chrNW_004955476:3,231,789...3,236,602 JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:17237821) ParkinsonsUK-UCL PMID:17237821 NCBI chrNW_004955475:10,930,175...11,006,876
Ensembl chrNW_004955475:10,930,192...11,005,724
JBrowse link
G Usp14 ubiquitin specific peptidase 14 involved_in ISO (PMID:19135427) ParkinsonsUK-UCL PMID:19135427 NCBI chrNW_004955402:9,710,080...9,737,601
Ensembl chrNW_004955402:9,710,080...9,743,077
JBrowse link
G Usp5 ubiquitin specific peptidase 5 involved_in ISO (PMID:24424410) ParkinsonsUK-UCL PMID:24424410 NCBI chrNW_004955413:4,451,530...4,466,832
Ensembl chrNW_004955413:4,451,622...4,466,832
JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO (PMID:16601693) MGI PMID:16601693 NCBI chrNW_004955500:7,797,063...7,811,142
Ensembl chrNW_004955500:7,797,060...7,811,167
JBrowse link
nuclear protein quality control by the ubiquitin-proteasome system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akirin2 akirin 2 acts_upstream_of_positive_effect ISO (PMID:34711951) UniProt PMID:34711951 NCBI chrNW_004955411:14,600,106...14,619,374
Ensembl chrNW_004955411:14,600,106...14,619,069
JBrowse link
G Cul3 cullin 3 involved_in ISO (PMID:27561354) UniProt PMID:27561354 NCBI chrNW_004955453:9,546,554...9,629,976
Ensembl chrNW_004955453:9,564,522...9,629,976
JBrowse link
G Klhl15 kelch like family member 15 involved_in ISO (PMID:27561354) UniProt PMID:27561354 NCBI chrNW_004955509:4,377,975...4,439,287
Ensembl chrNW_004955509:4,375,240...4,439,287
JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:37478846), (PMID:37478862) UniProt PMID:37478846 PMID:37478862 NCBI chrNW_004955417:26,997,572...27,085,511
Ensembl chrNW_004955417:26,998,513...27,083,005
JBrowse link
oxidation-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lonp1 lon peptidase 1, mitochondrial involved_in ISO (PMID:12198491) UniProt PMID:12198491 NCBI chrNW_004955495:3,712,173...3,729,556
Ensembl chrNW_004955495:3,712,199...3,731,301
JBrowse link
positive regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plk3 polo like kinase 3 involved_in ISO (PMID:27344333) ParkinsonsUK-UCL PMID:27344333 NCBI chrNW_004955464:13,419,562...13,424,104
Ensembl chrNW_004955464:13,419,562...13,424,104
JBrowse link
positive regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn3 ataxin 3 involved_in ISO (PMID:17000876) ParkinsonsUK-UCL PMID:17000876 NCBI chrNW_004955438:14,405,415...14,443,457
Ensembl chrNW_004955438:14,405,643...14,440,009
JBrowse link
G Bag6 BAG cochaperone 6 involved_in ISO (PMID:24424410) ParkinsonsUK-UCL PMID:24424410 NCBI chrNW_004955437:176,848...188,243
Ensembl chrNW_004955437:176,797...188,003
JBrowse link
G Bcap31 B cell receptor associated protein 31 involved_in ISO (PMID:18555783) ParkinsonsUK-UCL PMID:18555783 NCBI chrNW_004955580:429,223...459,168
Ensembl chrNW_004955580:428,644...459,168
JBrowse link
G Cav1 caveolin 1 involved_in ISO (PMID:24089527) ParkinsonsUK-UCL PMID:24089527 NCBI chrNW_004955432:22,258,262...22,292,403
Ensembl chrNW_004955432:22,258,250...22,292,403
JBrowse link
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in ISO (PMID:22045699)
(PMID:18307982)
ParkinsonsUK-UCL
UniProt
PMID:18307982 PMID:22045699 NCBI chrNW_004955433:14,609,275...14,621,774
Ensembl chrNW_004955433:14,608,375...14,621,839
JBrowse link
G Rnf185 ring finger protein 185 involved_in ISO (PMID:27485036) UniProt PMID:27485036 NCBI chrNW_004955455:5,351,530...5,394,615
Ensembl chrNW_004955455:5,351,488...5,395,026
JBrowse link
G Rnft1 ring finger protein, transmembrane 1 involved_in ISO (PMID:27485036) UniProt PMID:27485036 NCBI chrNW_004955451:3,165,316...3,178,991
Ensembl chrNW_004955451:3,164,845...3,178,991
JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISO (PMID:23246001) ParkinsonsUK-UCL PMID:23246001 NCBI chrNW_004955495:5,025,038...5,051,810
Ensembl chrNW_004955495:5,031,229...5,052,389
JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in ISO (PMID:26265139) UniProt PMID:26265139 NCBI chrNW_004955442:16,521,130...16,523,733
Ensembl chrNW_004955442:16,521,130...16,523,468
JBrowse link
G Tmem259 transmembrane protein 259 involved_in ISO (PMID:25977983) UniProt PMID:25977983 NCBI chrNW_004955495:6,856,609...6,859,948
Ensembl chrNW_004955495:6,852,278...6,859,351
JBrowse link
G Tmem67 transmembrane protein 67 ISO RGD PMID:19815549 RGD:8554391 NCBI chrNW_004955417:10,097,488...10,137,959
Ensembl chrNW_004955417:10,097,472...10,138,644
JBrowse link
G Tmx1 thioredoxin related transmembrane protein 1 involved_in ISO (PMID:29932915) UniProt PMID:29932915 NCBI chrNW_004955409:11,708,867...11,722,205
Ensembl chrNW_004955409:11,710,646...11,722,342
JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO (PMID:18307982) UniProt PMID:18307982 NCBI chrNW_004955432:3,575,034...3,617,029
Ensembl chrNW_004955432:3,575,272...3,616,691
JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO (PMID:18307982) UniProt PMID:18307982 NCBI chrNW_004955475:3,260,209...3,263,586
Ensembl chrNW_004955475:3,260,503...3,262,380
JBrowse link
G Usp13 ubiquitin specific peptidase 13 involved_in ISO (PMID:24424410) ParkinsonsUK-UCL PMID:24424410 NCBI chrNW_004955420:8,835,858...8,919,837
Ensembl chrNW_004955420:8,835,549...8,919,933
JBrowse link
G Wfs1 wolframin ER transmembrane glycoprotein involved_in ISO (PMID:19911006) MGI PMID:19911006 NCBI chrNW_004955514:3,902,508...3,924,281
Ensembl chrNW_004955514:3,902,454...3,924,610
JBrowse link
positive regulation of low-density lipoprotein particle receptor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca2 ATP binding cassette subfamily A member 2 acts_upstream_of ISO (PMID:21810484) ARUK-UCL PMID:21810484 NCBI chrNW_004955513:5,035,879...5,051,140
Ensembl chrNW_004955513:5,033,771...5,051,200
JBrowse link
G Apoe apolipoprotein E involved_in ISO (PMID:15950758) BHF-UCL PMID:15950758 NCBI chrNW_004955555:1,998,170...2,002,003
Ensembl chrNW_004955555:1,999,711...2,001,888
JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 involved_in ISO (PMID:22848640) BHF-UCL PMID:22848640 NCBI chrNW_004955464:4,424,583...4,439,805
Ensembl chrNW_004955464:4,425,435...4,439,842
JBrowse link
positive regulation of lysosomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ldlr low density lipoprotein receptor involved_in ISO (PMID:22383525) ARUK-UCL PMID:22383525 NCBI chrNW_004955495:2,114,702...2,135,584
Ensembl chrNW_004955495:2,114,434...2,138,056
JBrowse link
G Lrp1 LDL receptor related protein 1 involved_in ISO (PMID:23152628) ARUK-UCL PMID:23152628 NCBI chrNW_004955458:4,861,431...4,941,939
Ensembl chrNW_004955458:4,861,431...4,941,146
JBrowse link
G Lrp2 LDL receptor related protein 2 involved_in ISO (PMID:9228033) ARUK-UCL PMID:9228033 NCBI chrNW_004955449:5,155,109...5,314,886
Ensembl chrNW_004955449:5,160,946...5,314,948
JBrowse link
G Marchf2 membrane associated ring-CH-type finger 2 involved_in ISO (PMID:29573664) UniProt PMID:29573664 NCBI chrNW_004955563:977,030...998,487
Ensembl chrNW_004955563:977,030...998,485
JBrowse link
positive regulation of membrane protein ectodomain proteolysis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam8 ADAM metallopeptidase domain 8 involved_in ISO (PMID:15220135), (PMID:17548643)
(PMID:14761956)
BHF-UCL PMID:14761956 PMID:15220135 PMID:17548643 NCBI chrNW_004955477:10,894,288...10,906,961
Ensembl chrNW_004955477:10,895,446...10,907,215
JBrowse link
G Adam9 ADAM metallopeptidase domain 9 involved_in ISO (PMID:9857183) BHF-UCL PMID:9857183 NCBI chrNW_004955463:14,545,425...14,646,498
Ensembl chrNW_004955463:14,545,589...14,645,419
JBrowse link
G Adra2a adrenoceptor alpha 2A involved_in ISO (PMID:17655843) BHF-UCL PMID:17655843 NCBI chrNW_004955485:384,405...387,332
Ensembl chrNW_004955485:385,800...387,240
JBrowse link
G Apoe apolipoprotein E involved_in ISO (PMID:15950758)
(PMID:25015123)
BHF-UCL
ARUK-UCL
PMID:15950758 PMID:25015123 NCBI chrNW_004955555:1,998,170...2,002,003
Ensembl chrNW_004955555:1,999,711...2,001,888
JBrowse link
G App amyloid beta precursor protein involved_in ISO (PMID:25015123) ARUK-UCL PMID:25015123 NCBI chrNW_004955407:25,725,259...25,973,582
Ensembl chrNW_004955407:25,722,849...25,974,268
JBrowse link
G Gpld1 glycosylphosphatidylinositol specific phospholipase D1 involved_in ISO (PMID:17720976) UniProt PMID:17720976 NCBI chrNW_004955483:2,501,751...2,552,855
Ensembl chrNW_004955483:2,502,345...2,552,689
JBrowse link
G Ifng interferon gamma involved_in ISO (PMID:18373975) BHF-UCL PMID:18373975 NCBI chrNW_004955458:14,643,333...14,648,020
Ensembl chrNW_004955458:14,643,313...14,648,045
JBrowse link
G Il1b interleukin 1 beta involved_in ISO (PMID:18373975) BHF-UCL PMID:18373975 NCBI chrNW_004955470:1,486,936...1,491,888
Ensembl chrNW_004955470:1,486,967...1,491,947
JBrowse link
G Nrdc nardilysin convertase involved_in ISO (PMID:18355445)
(PMID:19935654)
BHF-UCL
UniProt
PMID:18355445 PMID:19935654 NCBI chrNW_004955464:7,222,948...7,298,234
Ensembl chrNW_004955464:7,222,948...7,298,234
JBrowse link
G Pacsin3 protein kinase C and casein kinase substrate in neurons 3 involved_in ISO (PMID:15280379) BHF-UCL PMID:15280379 NCBI chrNW_004955422:989,605...995,140 JBrowse link
G Rgma repulsive guidance molecule BMP co-receptor a acts_upstream_of_or_within ISO (PMID:26651291) MGI PMID:26651291 NCBI chrNW_004955416:21,221,023...21,261,831
Ensembl chrNW_004955416:21,221,023...21,261,831
JBrowse link
G Sh3d19 SH3 domain containing 19 involved_in ISO (PMID:15280379) BHF-UCL PMID:15280379 NCBI chrNW_004955471:5,724,303...5,810,868
Ensembl chrNW_004955471:5,726,267...5,770,384
JBrowse link
G Snx33 sorting nexin 33 involved_in ISO (PMID:18353773), (PMID:18419754) UniProt PMID:18353773 PMID:18419754 NCBI chrNW_004955450:2,669,993...2,682,503
Ensembl chrNW_004955450:2,669,993...2,682,503
JBrowse link
G Snx9 sorting nexin 9 involved_in ISO (PMID:18353773) UniProt PMID:18353773 NCBI chrNW_004955439:4,422,385...4,503,408
Ensembl chrNW_004955439:4,421,297...4,503,393
JBrowse link
G Tnf tumor necrosis factor involved_in ISO (PMID:18373975) BHF-UCL PMID:18373975 NCBI chrNW_004955437:117,267...119,899
Ensembl chrNW_004955437:117,206...120,700
JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B involved_in ISO (PMID:22480688) BHF-UCL PMID:22480688 NCBI chrNW_004955486:1,790,531...1,817,986
Ensembl chrNW_004955486:1,792,115...1,818,362
JBrowse link
positive regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag2 BAG cochaperone 2 involved_in ISO (PMID:19228967) ARUK-UCL PMID:19228967 NCBI chrNW_004955502:2,984,233...2,994,457 JBrowse link
G Dab2ip DAB2 interacting protein involved_in ISO (PMID:20080667) UniProt PMID:20080667 NCBI chrNW_004955419:6,229,437...6,416,619
Ensembl chrNW_004955419:6,228,591...6,416,402
JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:23675531) UniProt PMID:23675531 NCBI chrNW_004955415:14,085,404...14,098,220
Ensembl chrNW_004955415:14,085,404...14,098,856
JBrowse link
G Ecscr endothelial cell surface expressed chemotaxis and apoptosis regulator acts_upstream_of_or_within ISO (PMID:19416853) MGI PMID:19416853 NCBI chrNW_004955418:1,108,805...1,116,338
Ensembl chrNW_004955418:1,109,092...1,115,997
JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in ISO (PMID:23858059) ParkinsonsUK-UCL PMID:23858059 NCBI chrNW_004955471:6,852,459...7,026,590
Ensembl chrNW_004955471:6,848,101...6,955,881
JBrowse link
G Fmr1 Fragile X messenger ribonucleoprotein 1 involved_in ISO (PMID:24709664) UniProt PMID:24709664 NCBI chrNW_004955498:566,741...594,837
Ensembl chrNW_004955498:566,688...595,360
JBrowse link
G Kcne2 potassium voltage-gated channel subfamily E regulatory subunit 2 involved_in ISO (PMID:22180649) BHF-UCL PMID:22180649 NCBI chrNW_004955407:33,734,969...33,736,609
Ensembl chrNW_004955407:33,735,148...33,735,513
JBrowse link
G Neurl3 neuralized E3 ubiquitin protein ligase 3 involved_in ISO (PMID:38667302) UniProt PMID:38667302 NCBI chrNW_004955470:3,920,432...3,926,069 JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISO (PMID:16300740) UniProt PMID:16300740 NCBI chrNW_004955493:6,746,380...6,747,763
Ensembl chrNW_004955493:6,746,380...6,747,763
JBrowse link
G Oaz1 ornithine decarboxylase antizyme 1 ISO RGD PMID:12359729 RGD:7245486 NCBI chrNW_004955495:5,871,418...5,874,200
Ensembl chrNW_004955495:5,871,418...5,874,200
JBrowse link
G Osbpl7 oxysterol binding protein like 7 involved_in ISO (PMID:21669198) BHF-UCL PMID:21669198 NCBI chrNW_004955451:13,289,938...13,301,243
Ensembl chrNW_004955451:13,291,577...13,300,322
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:23858059) ParkinsonsUK-UCL PMID:23858059 NCBI chrNW_004955439:18,664,230...19,953,358
Ensembl chrNW_004955439:18,664,379...19,951,152
JBrowse link
G Rnf40 ring finger protein 40 ISO RGD PMID:12121982 RGD:633892 NCBI chrNW_004955493:7,627,189...7,640,711
Ensembl chrNW_004955493:7,627,189...7,640,711
JBrowse link
G Tmtc3 transmembrane O-mannosyltransferase targeting cadherins 3 involved_in ISO (PMID:21603654) UniProt PMID:21603654 NCBI chrNW_004955405:25,607,134...25,646,050
Ensembl chrNW_004955405:25,606,414...25,646,050
JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (PMID:29518356) ARUK-UCL PMID:29518356 NCBI chrNW_004955437:7,780,886...7,785,597
Ensembl chrNW_004955437:7,780,679...7,785,697
JBrowse link
positive regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 involved_in
acts_upstream_of_or_within
ISO (PMID:23512198)
(PMID:15937334)
UniProt
MGI
PMID:15937334 PMID:23512198 NCBI chrNW_004955538:3,208,711...3,224,386
Ensembl chrNW_004955538:3,208,710...3,229,904
JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO (PMID:23152632) MGI PMID:23152632 NCBI chrNW_004955429:14,076,976...14,301,034
Ensembl chrNW_004955429:14,076,960...14,304,236
JBrowse link
G Aurka aurora kinase A acts_upstream_of_or_within ISO (PMID:17060449) MGI PMID:17060449 NCBI chrNW_004955445:2,831,073...2,853,151
Ensembl chrNW_004955445:2,831,157...2,853,357
JBrowse link
G Axin1 axin 1 acts_upstream_of_or_within ISO (PMID:16601693) MGI PMID:16601693 NCBI chrNW_004955442:16,845,728...16,898,301
Ensembl chrNW_004955442:16,843,152...16,898,430
JBrowse link
G Bag2 BAG cochaperone 2 NOT|involved_in ISO (PMID:19228967) ARUK-UCL PMID:19228967 NCBI chrNW_004955502:2,984,233...2,994,457 JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 acts_upstream_of_or_within ISO (PMID:22302990) MGI PMID:22302990 NCBI chrNW_004955428:18,682,072...18,724,560
Ensembl chrNW_004955428:18,681,856...18,724,560
JBrowse link
G Cbfa2t3 CBFA2/RUNX1 partner transcriptional co-repressor 3 involved_in ISO (PMID:25974097) UniProt PMID:25974097 NCBI chrNW_004955541:2,724,369...2,777,540
Ensembl chrNW_004955541:2,724,312...2,777,592
JBrowse link
G Chfr checkpoint with forkhead and ring finger domains acts_upstream_of_or_within ISO (PMID:22285184) MGI PMID:22285184 NCBI chrNW_004955482:233,485...267,064
Ensembl chrNW_004955482:233,486...267,064
JBrowse link
G Clu clusterin involved_in ISO (PMID:20068069) UniProt PMID:20068069 NCBI chrNW_004955403:50,160,598...50,175,876
Ensembl chrNW_004955403:50,160,598...50,175,876
JBrowse link
G Cop1 COP1 E3 ubiquitin ligase involved_in ISO (PMID:19805145) UniProt PMID:19805145 NCBI chrNW_004955406:15,662,546...15,859,306
Ensembl chrNW_004955406:15,662,546...15,859,306
JBrowse link
G Csnk1a1 casein kinase 1 alpha 1 involved_in ISO (PMID:11955436)
(PMID:19364825)
ParkinsonsUK-UCL
FlyBase
PMID:11955436 PMID:19364825 NCBI chrNW_004955415:4,921,356...4,966,705
Ensembl chrNW_004955415:4,921,852...4,966,705
JBrowse link
G Csnk1d casein kinase 1 delta involved_in ISO (PMID:19414593) UniProt PMID:19414593 NCBI chrNW_004955506:904,659...936,293
Ensembl chrNW_004955506:904,660...935,330
JBrowse link
G Csnk1e casein kinase 1 epsilon involved_in ISO (PMID:19414593) UniProt PMID:19414593 NCBI chrNW_004955413:24,560,889...24,591,669
Ensembl chrNW_004955413:24,560,900...24,591,669
JBrowse link
G Dab2 DAB adaptor protein 2 involved_in ISO (PMID:12805222) BHF-UCL PMID:12805222 NCBI chrNW_004955426:23,852,752...23,883,030 JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:23675531) ParkinsonsUK-UCL PMID:23675531 NCBI chrNW_004955415:14,085,404...14,098,220
Ensembl chrNW_004955415:14,085,404...14,098,856
JBrowse link
G Det1 DET1 partner of COP1 E3 ubiquitin ligase involved_in ISO (PMID:14739464) UniProt PMID:14739464 NCBI chrNW_004955416:16,393,199...16,408,144
Ensembl chrNW_004955416:16,393,156...16,408,613
JBrowse link
G Dnajb2 DnaJ heat shock protein family (Hsp40) member B2 involved_in ISO (PMID:15936278) BHF-UCL PMID:15936278 NCBI chrNW_004955453:14,147,286...14,154,396
Ensembl chrNW_004955453:14,148,070...14,154,670
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 involved_in ISO (PMID:20177058) BHF-UCL PMID:20177058 NCBI chrNW_004955486:9,464,390...9,469,984
Ensembl chrNW_004955486:9,464,313...9,469,984
JBrowse link
G Fbxo22 F-box protein 22 acts_upstream_of_or_within ISO (PMID:19319192) MGI PMID:19319192 NCBI chrNW_004955450:1,152,383...1,171,257
Ensembl chrNW_004955450:1,152,383...1,171,250
JBrowse link
G Fbxw8 F-box and WD repeat domain containing 8 involved_in ISO (PMID:29153991) UniProt PMID:29153991 NCBI chrNW_004955455:14,099,888...14,204,889
Ensembl chrNW_004955455:14,100,636...14,204,792
JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in ISO (PMID:25684205) UniProt PMID:25684205 NCBI chrNW_004955467:9,667,938...9,670,067
Ensembl chrNW_004955467:9,667,941...9,670,067
JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) ParkinsonsUK-UCL PMID:23707074 NCBI chrNW_004955545:1,682,097...1,689,373
Ensembl chrNW_004955545:1,682,097...1,689,376
JBrowse link
G Gclc glutamate-cysteine ligase catalytic subunit acts_upstream_of_or_within ISO (PMID:17189825) MGI PMID:17189825 NCBI chrNW_004955411:2,593,523...2,617,553
Ensembl chrNW_004955411:2,593,541...2,616,539
JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in ISO (PMID:25897075) ARUK-UCL PMID:25897075 NCBI chrNW_004955555:668,641...676,351
Ensembl chrNW_004955555:667,973...676,351
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in
acts_upstream_of_or_within
ISO (PMID:25897075)
(PMID:22660580)
(PMID:19364825), (PMID:22660580)
ARUK-UCL
MGI
UniProt
PMID:19364825 PMID:22660580 PMID:25897075 NCBI chrNW_004955427:19,489,972...19,671,137
Ensembl chrNW_004955427:19,495,422...19,671,137
JBrowse link
G Hamp hepcidin antimicrobial peptide involved_in ISO (PMID:37277838) UniProt PMID:37277838 NCBI chrNW_004955468:4,576,080...4,577,591
Ensembl chrNW_004955468:4,575,510...4,577,649
JBrowse link
G Hspbp1 HSPA (Hsp70) binding protein 1 involved_in ISO (PMID:16831871) BHF-UCL PMID:16831871 NCBI chrNW_004955567:948,040...960,621
Ensembl chrNW_004955567:947,798...960,678
JBrowse link
G Il33 interleukin 33 acts_upstream_of_or_within ISO (PMID:22660580) MGI PMID:22660580 NCBI chrNW_004955434:10,145,449...10,187,595
Ensembl chrNW_004955434:10,171,812...10,188,948
JBrowse link
G Klhl40 kelch like family member 40 involved_in ISO (PMID:25940086) UniProt PMID:25940086 NCBI chrNW_004955420:28,117,553...28,122,391
Ensembl chrNW_004955420:28,117,898...28,122,270
JBrowse link
G LOC102027549 serotransferrin involved_in ISO (PMID:37277838) UniProt PMID:37277838 NCBI chrNW_004955501:4,801,710...4,832,025
Ensembl chrNW_004955501:4,801,885...4,831,910
JBrowse link
G Lrrk2 leucine rich repeat kinase 2 involved_in ISO (PMID:20457918) BHF-UCL PMID:20457918 NCBI chrNW_004955505:84,324...216,923
Ensembl chrNW_004955505:81,796...216,923
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 involved_in ISO (PMID:29153991) UniProt PMID:29153991 NCBI chrNW_004955556:1,593,552...1,705,543
Ensembl chrNW_004955556:1,593,494...1,665,784
JBrowse link
G Mapk9 mitogen-activated protein kinase 9 involved_in ISO (PMID:29153991) UniProt PMID:29153991 NCBI chrNW_004955408:391,094...430,638
Ensembl chrNW_004955408:391,094...430,981
JBrowse link
G Mdm2 MDM2 proto-oncogene involved_in ISO (PMID:11278372) BHF-UCL PMID:11278372 NCBI chrNW_004955458:15,264,028...15,287,290
Ensembl chrNW_004955458:15,263,739...15,286,808
JBrowse link
G Nkd2 NKD inhibitor of WNT signaling pathway 2 involved_in ISO (PMID:20177058) BHF-UCL PMID:20177058 NCBI chrNW_004955504:507,253...527,275
Ensembl chrNW_004955504:507,388...526,407
JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:25818168), (PMID:27323397)
(PMID:21804542)
UniProt PMID:21804542 PMID:25818168 PMID:27323397 NCBI chrNW_004955574:1,505,997...1,514,680
Ensembl chrNW_004955574:1,506,022...1,517,130
JBrowse link
G Nub1 negative regulator of ubiquitin like proteins 1 involved_in ISO (PMID:16707496) UniProt PMID:16707496 NCBI chrNW_004955491:5,709,791...5,737,620
Ensembl chrNW_004955491:5,709,791...5,739,079
JBrowse link
G Pabir1 PP2A Aalpha (PPP2R1A) and B55A (PPP2R2A) interacting phosphatase regulator 1 involved_in ISO (PMID:27588481) UniProt PMID:27588481 NCBI chrNW_004955434:4,250,105...4,251,508 JBrowse link
G Paqr3 progestin and adipoQ receptor family member 3 involved_in ISO (PMID:29331071), (PMID:35710596) UniProt PMID:29331071 PMID:35710596 NCBI chrNW_004955433:3,323,426...3,350,358
Ensembl chrNW_004955433:3,321,625...3,350,588
JBrowse link
G Pias1 protein inhibitor of activated STAT 1 involved_in ISO (PMID:22406621) UniProt PMID:22406621 NCBI chrNW_004955450:7,896,741...7,991,045
Ensembl chrNW_004955450:7,896,741...7,991,027
JBrowse link
G Plk1 polo like kinase 1 involved_in ISO (PMID:19473992) UniProt PMID:19473992 NCBI chrNW_004955493:2,206,353...2,217,231
Ensembl chrNW_004955493:2,206,353...2,217,231
JBrowse link
G Plk2 polo like kinase 2 ISO RGD PMID:18723513 RGD:7241135 NCBI chrNW_004955446:9,671,090...9,676,956
Ensembl chrNW_004955446:9,671,090...9,677,188
JBrowse link
G Plk3 polo like kinase 3 involved_in ISO (PMID:20889502) UniProt PMID:20889502 NCBI chrNW_004955464:13,419,562...13,424,104
Ensembl chrNW_004955464:13,419,562...13,424,104
JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO (PMID:17030191) BHF-UCL PMID:17030191 NCBI chrNW_004955500:1,897,899...1,990,791
Ensembl chrNW_004955500:1,897,912...1,990,875
JBrowse link
G Psen1 presenilin 1 involved_in ISO (PMID:20208556) BHF-UCL PMID:20208556 NCBI chrNW_004955523:2,128,529...2,210,737
Ensembl chrNW_004955523:2,128,529...2,210,737
JBrowse link
G Psen2 presenilin 2 involved_in ISO (PMID:20208556) BHF-UCL PMID:20208556 NCBI chrNW_004955406:5,727,367...5,748,798
Ensembl chrNW_004955406:5,727,367...5,752,234
JBrowse link
G Psmd10 proteasome 26S subunit, non-ATPase 10 involved_in ISO (PMID:16023600) UniProt PMID:16023600 NCBI chrNW_004955490:7,825,202...7,832,347
Ensembl chrNW_004955490:7,825,251...7,833,772
JBrowse link
G Rack1 receptor for activated C kinase 1 involved_in ISO (PMID:19785988) UniProt PMID:19785988 NCBI chrNW_004955530:78,488...83,297
Ensembl chrNW_004955530:78,426...83,297
JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein involved_in ISO (PMID:26296656) CAFA PMID:26296656 NCBI chrNW_004955415:31,991,478...31,997,277
Ensembl chrNW_004955415:31,991,479...32,000,250
JBrowse link
G Rbx1 ring-box 1 involved_in ISO (PMID:14739464) UniProt PMID:14739464 NCBI chrNW_004955413:26,579,759...26,592,980
Ensembl chrNW_004955413:26,579,759...26,592,980
JBrowse link
G Rchy1 ring finger and CHY zinc finger domain containing 1 involved_in ISO (PMID:19483087) UniProt PMID:19483087 NCBI chrNW_004955474:1,463,817...1,475,677
Ensembl chrNW_004955474:1,463,817...1,475,690
JBrowse link
G Rnf180 ring finger protein 180 acts_upstream_of_or_within ISO (PMID:18363970), (PMID:23926250) MGI PMID:18363970 PMID:23926250 NCBI chrNW_004955446:4,544,128...4,733,295
Ensembl chrNW_004955446:4,543,974...4,733,569
JBrowse link
G Sh3rf2 SH3 domain containing ring finger 2 involved_in ISO (PMID:22128169) UniProt PMID:22128169 RGD:13673844 NCBI chrNW_004955415:8,024,984...8,148,970
Ensembl chrNW_004955415:8,042,380...8,147,564
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO (PMID:20203304) AgBase PMID:20203304 NCBI chrNW_004955425:20,280,725...20,307,663
Ensembl chrNW_004955425:20,279,963...20,307,663
JBrowse link
G Sirt2 sirtuin 2 involved_in ISO (PMID:24681946) UniProt PMID:24681946 NCBI chrNW_004955468:626,365...644,441
Ensembl chrNW_004955468:626,365...644,441
JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (PMID:27457971) CACAO PMID:27457971 NCBI chrNW_004955495:4,641,883...4,650,518
Ensembl chrNW_004955495:4,644,023...4,650,083
JBrowse link
G Socs5 suppressor of cytokine signaling 5 involved_in ISO (PMID:15590694) UniProt PMID:15590694 NCBI chrNW_004955441:13,593,342...13,657,389
Ensembl chrNW_004955441:13,593,342...13,657,389
JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in ISO (PMID:11146632) HGNC-UCL PMID:11146632 NCBI chrNW_004955442:16,521,130...16,523,733
Ensembl chrNW_004955442:16,521,130...16,523,468
JBrowse link
G Sumo1 small ubiquitin like modifier 1 involved_in ISO (PMID:18408734) UniProt PMID:18408734 NCBI chrNW_004955457:12,538,974...12,565,803
Ensembl chrNW_004955457:12,538,480...12,565,803
JBrowse link
G Sumo2 small ubiquitin like modifier 2 involved_in ISO (PMID:18408734) UniProt PMID:18408734 NCBI chrNW_004955553:2,045,277...2,066,023
Ensembl chrNW_004955553:2,045,415...2,065,863
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:15053879) BHF-UCL PMID:15053879 NCBI chrNW_004955475:10,930,175...11,006,876
Ensembl chrNW_004955475:10,930,192...11,005,724
JBrowse link
G Trib1 tribbles pseudokinase 1 involved_in ISO (PMID:20410507) BHF-UCL PMID:20410507 NCBI chrNW_004955461:494,003...501,928
Ensembl chrNW_004955461:494,003...501,990
JBrowse link
G Trib2 tribbles pseudokinase 2 involved_in ISO (PMID:20410507) BHF-UCL PMID:20410507 NCBI chrNW_004955487:6,889,571...6,915,068
Ensembl chrNW_004955487:6,890,246...6,915,135
JBrowse link
G Ube2v2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chrNW_004955454:7,951,876...7,998,686
Ensembl chrNW_004955454:7,951,876...7,998,686
JBrowse link
G Usp5 ubiquitin specific peptidase 5 involved_in ISO (PMID:19098288) UniProt PMID:19098288 NCBI chrNW_004955413:4,451,530...4,466,832
Ensembl chrNW_004955413:4,451,622...4,466,832
JBrowse link
G Vcp valosin containing protein involved_in ISO (PMID:9452483) BHF-UCL PMID:9452483 NCBI chrNW_004955472:1,111,649...1,124,076
Ensembl chrNW_004955472:1,107,164...1,124,076
JBrowse link
G Zer1 zyg-11 related cell cycle regulator involved_in ISO (PMID:31273098) UniProt PMID:31273098 NCBI chrNW_004955570:1,138,477...1,153,246
Ensembl chrNW_004955570:1,138,477...1,152,198
JBrowse link
G Zfand2a zinc finger AN1-type containing 2A acts_upstream_of_or_within ISO (PMID:16973439) MGI PMID:16973439 NCBI chrNW_004955460:8,881,981...8,892,404
Ensembl chrNW_004955460:8,881,981...8,892,404
JBrowse link
G Zyg11b zyg-11 family member B, cell cycle regulator involved_in ISO (PMID:31273098) UniProt PMID:31273098 NCBI chrNW_004955464:6,354,510...6,404,668
Ensembl chrNW_004955464:6,354,510...6,405,041
JBrowse link
positive regulation of protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amer1 APC membrane recruitment protein 1 involved_in ISO (PMID:17510365) ParkinsonsUK-UCL PMID:17510365 NCBI chrNW_004955475:4,451,094...4,470,750
Ensembl chrNW_004955475:4,463,023...4,466,406
JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (PMID:12952940)
(PMID:16478791)
MGI PMID:12952940 PMID:16478791 NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Asb9 ankyrin repeat and SOCS box containing 9 acts_upstream_of_or_within ISO (PMID:17148442) MGI PMID:17148442 NCBI chrNW_004955519:2,902,802...2,941,358
Ensembl chrNW_004955519:2,902,802...2,941,433
JBrowse link
G Atg4b autophagy related 4B cysteine peptidase ISO RGD PMID:16874114 RGD:2301238 NCBI chrNW_004955542:164,969...192,498
Ensembl chrNW_004955542:166,365...193,006
JBrowse link
G Atg7 autophagy related 7 involved_in ISO (PMID:20543840) UniProt PMID:20543840 NCBI chrNW_004955429:14,076,976...14,301,034
Ensembl chrNW_004955429:14,076,960...14,304,236
JBrowse link
G Axin1 axin 1 involved_in ISO (PMID:9601641) BHF-UCL PMID:9601641 NCBI chrNW_004955442:16,845,728...16,898,301
Ensembl chrNW_004955442:16,843,152...16,898,430
JBrowse link
G C4bpa complement component 4 binding protein alpha involved_in ISO (PMID:22333221) BHF-UCL PMID:22333221 NCBI chrNW_004955406:42,613,659...42,641,918
Ensembl chrNW_004955406:42,613,607...42,641,670
JBrowse link
G C4bpb complement component 4 binding protein beta involved_in ISO (PMID:22333221) BHF-UCL PMID:22333221 NCBI chrNW_004955406:42,601,164...42,608,912 JBrowse link
G Cblb Cbl proto-oncogene B acts_upstream_of_or_within ISO (PMID:14973438) MGI PMID:14973438 NCBI chrNW_004955427:6,601,651...6,812,896
Ensembl chrNW_004955427:6,604,820...6,812,882
JBrowse link
G Cdkn1b cyclin dependent kinase inhibitor 1B acts_upstream_of_or_within ISO (PMID:19056892) MGI PMID:19056892 NCBI chrNW_004955413:9,615,542...9,620,542
Ensembl chrNW_004955413:9,615,542...9,620,542
JBrowse link
G Crebrf CREB3 regulatory factor involved_in ISO (PMID:18391022) UniProt PMID:18391022 NCBI chrNW_004955408:25,718,523...25,769,551
Ensembl chrNW_004955408:25,719,187...25,774,555
JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISO (PMID:20625391) UniProt PMID:20625391 NCBI chrNW_004955597:326,601...397,112 JBrowse link
G Cul4a cullin 4A involved_in ISO (PMID:11027288), (PMID:20870715) UniProt PMID:11027288 PMID:20870715 NCBI chrNW_004955404:583,261...617,914
Ensembl chrNW_004955404:583,261...617,914
JBrowse link
G Cul4b cullin 4B acts_upstream_of_or_within ISO (PMID:18602923) MGI PMID:18602923 NCBI chrNW_004955572:1,308,491...1,365,147 JBrowse link
G Dab2ip DAB2 interacting protein involved_in ISO (PMID:19948740) UniProt PMID:19948740 NCBI chrNW_004955419:6,229,437...6,416,619
Ensembl chrNW_004955419:6,228,591...6,416,402
JBrowse link
G Dact1 dishevelled binding antagonist of beta catenin 1 acts_upstream_of_or_within
involved_in
ISO (PMID:16446366)
(PMID:18936100)
MGI
ParkinsonsUK-UCL
PMID:16446366 PMID:18936100 NCBI chrNW_004955466:12,367,760...12,374,141
Ensembl chrNW_004955466:12,367,775...12,373,036
JBrowse link
G Dcaf1 DDB1 and CUL4 associated factor 1 involved_in ISO (PMID:23063525) UniProt PMID:23063525 NCBI chrNW_004955532:3,085,386...3,153,952
Ensembl chrNW_004955532:3,085,386...3,154,671
JBrowse link
G Ddb1 damage specific DNA binding protein 1 involved_in ISO (PMID:16949367)
(PMID:14739464), (PMID:16949367)
UniProt PMID:14739464 PMID:16949367 NCBI chrNW_004955511:6,209,777...6,233,594
Ensembl chrNW_004955511:6,209,777...6,233,594
JBrowse link
G Dtl denticleless E3 ubiquitin protein ligase homolog involved_in ISO (PMID:16949367) UniProt PMID:16949367 NCBI chrNW_004955406:5,256,057...5,299,573
Ensembl chrNW_004955406:5,254,558...5,299,573
JBrowse link
G Egln2 egl-9 family hypoxia inducible factor 2 involved_in ISO (PMID:11595184) UniProt PMID:11595184 NCBI chrNW_004955578:541,723...557,609
Ensembl chrNW_004955578:548,578...557,609
JBrowse link
G Ezr ezrin involved_in ISO (PMID:21148287) UniProt PMID:21148287 NCBI chrNW_004955439:3,701,722...3,740,345
Ensembl chrNW_004955439:3,703,013...3,740,345
JBrowse link
G Faf1 Fas associated factor 1 involved_in ISO (PMID:26842564) UniProt PMID:26842564 NCBI chrNW_004955464:8,037,344...8,477,798
Ensembl chrNW_004955464:8,036,955...8,479,249
JBrowse link
G Fbxl5 F-box and leucine rich repeat protein 5 acts_upstream_of_or_within ISO (PMID:21907140) MGI PMID:21907140 NCBI chrNW_004955480:8,360,957...8,397,903
Ensembl chrNW_004955480:8,344,019...8,398,650
JBrowse link
G Fbxo11 F-box protein 11 ISO RGD PMID:32988261 RGD:152176655 NCBI chrNW_004955441:14,471,283...14,495,508
Ensembl chrNW_004955441:14,471,283...14,553,916
JBrowse link
G Foxo1 forkhead box O1 involved_in ISO (PMID:20543840) UniProt PMID:20543840 NCBI chrNW_004955431:5,797,359...5,890,758 JBrowse link
G Gga1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 acts_upstream_of_or_within ISO (PMID:22836275) MGI PMID:22836275 NCBI chrNW_004955413:24,018,595...24,037,887
Ensembl chrNW_004955413:24,018,595...24,037,887
JBrowse link
G Gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 acts_upstream_of_or_within ISO (PMID:22836275) MGI PMID:22836275 NCBI chrNW_004955553:2,103,694...2,124,748
Ensembl chrNW_004955553:2,108,379...2,124,748
JBrowse link
G Gja1 gap junction protein alpha 1 ISO RGD PMID:12952975 RGD:1582696 NCBI chrNW_004955436:3,612,533...3,618,095
Ensembl chrNW_004955436:3,612,533...3,618,095
JBrowse link
G Gpc3 glypican 3 acts_upstream_of_or_within ISO (PMID:18477453) MGI PMID:18477453 NCBI chrNW_004955473:969,627...1,431,706
Ensembl chrNW_004955473:969,800...1,431,483
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO RGD PMID:17686886 RGD:10045647 NCBI chrNW_004955427:19,489,972...19,671,137
Ensembl chrNW_004955427:19,495,422...19,671,137
JBrowse link
G Hamp hepcidin antimicrobial peptide acts_upstream_of_or_within ISO (PMID:21700773) MGI PMID:21700773 NCBI chrNW_004955468:4,576,080...4,577,591
Ensembl chrNW_004955468:4,575,510...4,577,649
JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 involved_in ISO (PMID:18292230) ARUK-UCL PMID:18292230 NCBI chrNW_004955538:1,469,544...1,475,010
Ensembl chrNW_004955538:1,469,544...1,475,019
JBrowse link
G Ier3 immediate early response 3 acts_upstream_of_or_within ISO (PMID:19096392) MGI PMID:19096392 NCBI chrNW_004955583:730,353...731,301
Ensembl chrNW_004955583:730,289...731,260
JBrowse link
G Itch itchy E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (PMID:14973438) MGI PMID:14973438 NCBI chrNW_004955422:26,810,829...26,918,517
Ensembl chrNW_004955422:26,809,972...26,887,123
JBrowse link
G Lpcat1 lysophosphatidylcholine acyltransferase 1 acts_upstream_of_or_within ISO (PMID:20018880) MGI PMID:20018880 NCBI chrNW_004955504:760,941...791,996
Ensembl chrNW_004955504:758,881...791,996
JBrowse link
G Mapk15 mitogen-activated protein kinase 15 ISO Human Estrogen Receptor alpha RGD PMID:12917323 RGD:2304230 NCBI chrNW_004955454:2,413,393...2,420,703
Ensembl chrNW_004955454:2,413,822...2,419,276
JBrowse link
G Msn moesin involved_in ISO (PMID:21148287) UniProt PMID:21148287 NCBI chrNW_004955475:5,301,856...5,370,378
Ensembl chrNW_004955475:5,301,910...5,370,691
JBrowse link
G Mylip myosin regulatory light chain interacting protein involved_in ISO (PMID:19520913) BHF-UCL PMID:19520913 NCBI chrNW_004955483:9,725,343...9,745,041
Ensembl chrNW_004955483:9,723,023...9,745,062
JBrowse link
G Ndfip1 Nedd4 family interacting protein 1 acts_upstream_of_or_within ISO (PMID:17137798) MGI PMID:17137798 NCBI chrNW_004955415:11,643,846...11,666,131
Ensembl chrNW_004955415:11,643,846...11,666,131
JBrowse link
G Ndufa13 NADH:ubiquinone oxidoreductase subunit A13 involved_in ISO (PMID:17297443) ParkinsonsUK-UCL PMID:17297443 NCBI chrNW_004955524:2,426,604...2,433,682
Ensembl chrNW_004955524:2,426,604...2,433,679
JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (PMID:14973438)
(PMID:11748237)
MGI PMID:11748237 PMID:14973438 NCBI chrNW_004955409:183,645...281,252
Ensembl chrNW_004955409:183,545...281,318
JBrowse link
G Nedd4l NEDD4 like E3 ubiquitin protein ligase ISO RGD PMID:18174164 RGD:6893331 NCBI chrNW_004955402:42,339,380...42,688,661
Ensembl chrNW_004955402:42,339,380...42,688,714
JBrowse link
G Nkd1 NKD inhibitor of WNT signaling pathway 1 involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004955433:8,622,568...8,705,356
Ensembl chrNW_004955433:8,622,568...8,699,737
JBrowse link
G Nsf N-ethylmaleimide sensitive factor, vesicle fusing ATPase involved_in ISO (PMID:22045810) CACAO PMID:22045810 NCBI chrNW_004955478:10,610,715...10,732,656
Ensembl chrNW_004955478:10,610,619...10,732,656
JBrowse link
G Oaz1 ornithine decarboxylase antizyme 1 involved_in ISO (PMID:17900240)
(PMID:24967154)
UniProt PMID:17900240 PMID:24967154 NCBI chrNW_004955495:5,871,418...5,874,200
Ensembl chrNW_004955495:5,871,418...5,874,200
JBrowse link
G Oaz2 ornithine decarboxylase antizyme 2 involved_in ISO (PMID:24967154) UniProt PMID:24967154 NCBI chrNW_004955450:10,790,629...10,803,411
Ensembl chrNW_004955450:10,790,829...10,802,276
JBrowse link
G Oaz3 ornithine decarboxylase antizyme 3 involved_in ISO (PMID:24967154) UniProt PMID:24967154 NCBI chrNW_004955589:654,088...658,003 JBrowse link
G Plk2 polo like kinase 2 involved_in ISO (PMID:23983262) ParkinsonsUK-UCL PMID:23983262 NCBI chrNW_004955446:9,671,090...9,676,956
Ensembl chrNW_004955446:9,671,090...9,677,188
JBrowse link
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004955501:2,648,017...2,751,999
Ensembl chrNW_004955501:2,648,017...2,752,057
JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:22072966) CACAO PMID:22072966 NCBI chrNW_004955429:15,103,792...15,167,498 JBrowse link
G Rbx1 ring-box 1 involved_in ISO (PMID:11027288), (PMID:16482215), (PMID:27626656) UniProt PMID:11027288 PMID:16482215 PMID:27626656 NCBI chrNW_004955413:26,579,759...26,592,980
Ensembl chrNW_004955413:26,579,759...26,592,980
JBrowse link
G Rdx radixin involved_in ISO (PMID:21148287) UniProt PMID:21148287 NCBI chrNW_004955412:12,100,436...12,184,444
Ensembl chrNW_004955412:12,100,359...12,172,545
JBrowse link
G Rhbdd1 rhomboid domain containing 1 involved_in ISO (PMID:18953687)
(PMID:22624035)
UniProt PMID:18953687 PMID:22624035 NCBI chrNW_004955453:7,527,090...7,656,689
Ensembl chrNW_004955453:7,528,916...7,644,477
JBrowse link
G Rhbdd3 rhomboid domain containing 3 acts_upstream_of_or_within ISO (PMID:23610400) MGI PMID:23610400 NCBI chrNW_004955455:3,564,867...3,570,910
Ensembl chrNW_004955455:3,564,867...3,570,798
JBrowse link
G Rilp Rab interacting lysosomal protein involved_in ISO (PMID:17959629) UniProt PMID:17959629 NCBI chrNW_004955481:1,531,175...1,534,794
Ensembl chrNW_004955481:1,531,574...1,534,443
JBrowse link
G Rnf41 ring finger protein 41 involved_in ISO (PMID:27353365) CAFA PMID:27353365 NCBI chrNW_004955458:3,799,450...3,833,269
Ensembl chrNW_004955458:3,799,450...3,833,263
JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in ISO (PMID:21242315) UniProt PMID:21242315 NCBI chrNW_004955568:1,559,519...1,587,782
Ensembl chrNW_004955568:1,559,452...1,587,782
JBrowse link
G Sgsm3 small G protein signaling modulator 3 involved_in ISO (PMID:15709751) UniProt PMID:15709751 NCBI chrNW_004955413:26,094,170...26,139,062
Ensembl chrNW_004955413:26,094,146...26,142,219
JBrowse link
G Snf8 SNF8 subunit of ESCRT-II involved_in ISO (PMID:17959629) UniProt PMID:17959629 NCBI chrNW_004955451:12,396,625...12,406,014
Ensembl chrNW_004955451:12,396,625...12,406,014
JBrowse link
G Snx1 sorting nexin 1 ISO RGD PMID:11110793 RGD:68866 NCBI chrNW_004955450:11,266,712...11,306,014
Ensembl chrNW_004955450:11,266,712...11,305,930
JBrowse link
G Sorl1 sortilin related receptor 1 involved_in ISO (PMID:24523320) Alzheimers_University_of_Toronto PMID:24523320 NCBI chrNW_004955412:22,421,984...22,576,179
Ensembl chrNW_004955412:22,421,984...22,576,179
JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO (PMID:20802155) UniProt PMID:20802155 NCBI chrNW_004955454:13,689,403...13,690,019 JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:19047045) MGI PMID:19047045 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563
JBrowse link
G Stx5 syntaxin 5 involved_in ISO (PMID:21242315) UniProt PMID:21242315 NCBI chrNW_004955599:414,338...438,581
Ensembl chrNW_004955599:414,392...438,581
JBrowse link
G Tiparp TCDD inducible poly(ADP-ribose) polymerase acts_upstream_of_or_within ISO (PMID:23275542) MGI PMID:23275542 NCBI chrNW_004955448:7,687,668...7,716,481
Ensembl chrNW_004955448:7,687,668...7,716,707
JBrowse link
G Tnf tumor necrosis factor involved_in ISO (PMID:18632959) AgBase PMID:18632959 NCBI chrNW_004955437:117,267...119,899
Ensembl chrNW_004955437:117,206...120,700
JBrowse link
G Tnfaip3 TNF alpha induced protein 3 involved_in
acts_upstream_of_or_within
ISO (PMID:21127049)
(PMID:18952128)
BHF-UCL
MGI
PMID:18952128 PMID:21127049 NCBI chrNW_004955436:21,566,591...21,581,551
Ensembl chrNW_004955436:21,566,423...21,578,469
JBrowse link
G Trim32 tripartite motif containing 32 acts_upstream_of_or_within
involved_in
ISO (PMID:16243356)
(PMID:19269368)
MGI
BHF-UCL
PMID:16243356 PMID:19269368 NCBI chrNW_004955419:11,151,751...11,168,046
Ensembl chrNW_004955419:11,151,751...11,168,041
JBrowse link
G Ubr3 ubiquitin protein ligase E3 component n-recognin 3 ISO RGD PMID:32988261 RGD:152176655 NCBI chrNW_004955449:4,583,114...4,773,474
Ensembl chrNW_004955449:4,585,494...4,773,413
JBrowse link
G Ubxn2a UBX domain protein 2A involved_in ISO (PMID:37037900) UniProt PMID:37037900 NCBI chrNW_004955469:6,173,524...6,214,568
Ensembl chrNW_004955469:6,173,524...6,214,568
JBrowse link
G Vcp valosin containing protein involved_in ISO (PMID:11483959), (PMID:18775313) BHF-UCL PMID:11483959 PMID:18775313 NCBI chrNW_004955472:1,111,649...1,124,076
Ensembl chrNW_004955472:1,107,164...1,124,076
JBrowse link
G Vgll4 vestigial like family member 4 involved_in ISO (PMID:27720608) UniProt PMID:27720608 NCBI chrNW_004955429:14,301,509...14,413,163
Ensembl chrNW_004955429:14,303,682...14,400,743
JBrowse link
G Vip vasoactive intestinal peptide involved_in ISO (PMID:9603988) BHF-UCL PMID:9603988 RGD:8554017 NCBI chrNW_004955439:9,021,923...9,031,783
Ensembl chrNW_004955439:9,021,904...9,031,792
JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:21148287) UniProt PMID:21148287 NCBI chrNW_004955412:20,161,520...20,190,141
Ensembl chrNW_004955412:20,177,623...20,190,141
JBrowse link
G Vps28 VPS28 subunit of ESCRT-I involved_in ISO (PMID:11916981) UniProt PMID:11916981 NCBI chrNW_004955454:3,049,977...3,054,078
Ensembl chrNW_004955454:3,048,042...3,054,361
JBrowse link
G Vps35 VPS35 retromer complex component involved_in ISO (PMID:25533483) ParkinsonsUK-UCL PMID:25533483 NCBI chrNW_004955448:207,582...240,264
Ensembl chrNW_004955448:204,991...240,160
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:12952940) MGI PMID:12952940 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
G Znf268 zinc finger protein 268 involved_in ISO (PMID:23091055) UniProt PMID:23091055 NCBI chrNW_004955482:17,009...38,746 JBrowse link
positive regulation of protein catabolic process in the vacuole term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd81 CD81 molecule involved_in ISO (PMID:25635054) BHF-UCL PMID:25635054 NCBI chrNW_004955422:14,155,682...14,175,181
Ensembl chrNW_004955422:14,155,682...14,175,181
JBrowse link
positive regulation of proteolysis involved in protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5if1 ATP synthase inhibitory factor subunit 1 involved_in ISO (PMID:24005319) ParkinsonsUK-UCL PMID:24005319 NCBI chrNW_004955452:7,372,917...7,375,072
Ensembl chrNW_004955452:7,373,001...7,375,856
JBrowse link
G Ctsc cathepsin C involved_in ISO PMID:18307834 ParkinsonsUK-UCL PMID:18307834 RGD:8661625 NCBI chrNW_004955414:5,062,355...5,092,631
Ensembl chrNW_004955414:5,062,355...5,092,154
JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:36543799) UniProt PMID:36543799 NCBI chrNW_004955415:14,085,404...14,098,220
Ensembl chrNW_004955415:14,085,404...14,098,856
JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:21700325) ARUK-UCL PMID:21700325 NCBI chrNW_004955545:1,682,097...1,689,373
Ensembl chrNW_004955545:1,682,097...1,689,376
JBrowse link
G Laptm5 lysosomal protein transmembrane 5 involved_in ISO (PMID:22949502) ARUK-UCL PMID:22949502 NCBI chrNW_004955452:9,335,481...9,358,177
Ensembl chrNW_004955452:9,334,587...9,358,444
JBrowse link
G Rgn regucalcin ISO RGD PMID:1513338 RGD:9590188 NCBI chrNW_004955516:958,416...978,829
Ensembl chrNW_004955516:955,680...978,910
JBrowse link
G Ufl1 UFM1 specific ligase 1 involved_in ISO (PMID:36543799) UniProt PMID:36543799 NCBI chrNW_004955411:22,548,139...22,577,287
Ensembl chrNW_004955411:22,548,219...22,580,903
JBrowse link
positive regulation of retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcap31 B cell receptor associated protein 31 involved_in ISO (PMID:18555783) ParkinsonsUK-UCL PMID:18555783 NCBI chrNW_004955580:429,223...459,168
Ensembl chrNW_004955580:428,644...459,168
JBrowse link
G Edem1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in ISO (PMID:24200403) ParkinsonsUK-UCL PMID:24200403 NCBI chrNW_004955421:8,196,631...8,225,561
Ensembl chrNW_004955421:8,196,557...8,225,561
JBrowse link
G Edem2 ER degradation enhancing alpha-mannosidase like protein 2 involved_in ISO (PMID:24200403) ParkinsonsUK-UCL PMID:24200403 NCBI chrNW_004955422:26,243,034...26,271,849
Ensembl chrNW_004955422:26,242,986...26,273,297
JBrowse link
positive regulation of ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agbl4 AGBL carboxypeptidase 4 acts_upstream_of_or_within ISO (PMID:29593216) MGI PMID:29593216 NCBI chrNW_004955464:8,847,401...10,195,184
Ensembl chrNW_004955464:8,880,455...10,193,907
JBrowse link
G Atxn3 ataxin 3 involved_in ISO (PMID:17000876) ParkinsonsUK-UCL PMID:17000876 NCBI chrNW_004955438:14,405,415...14,443,457
Ensembl chrNW_004955438:14,405,643...14,440,009
JBrowse link
G Axin1 axin 1 involved_in
acts_upstream_of_or_within
ISO PMID:10228155
(PMID:16601693)
BHF-UCL
MGI
PMID:10228155 PMID:16601693 RGD:8553327 NCBI chrNW_004955442:16,845,728...16,898,301
Ensembl chrNW_004955442:16,843,152...16,898,430
JBrowse link
G Bcap31 B cell receptor associated protein 31 involved_in ISO (PMID:18555783) ParkinsonsUK-UCL PMID:18555783 NCBI chrNW_004955580:429,223...459,168
Ensembl chrNW_004955580:428,644...459,168
JBrowse link
G Ccdc22 coiled-coil domain containing 22 involved_in ISO (PMID:23563313) UniProt PMID:23563313 NCBI chrNW_004955543:719,185...731,788
Ensembl chrNW_004955543:718,996...733,753
JBrowse link
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 NOT|involved_in ISO (PMID:16173922) UniProt PMID:16173922 NCBI chrNW_004955451:13,160,811...13,170,012
Ensembl chrNW_004955451:13,120,761...13,170,073
JBrowse link
G Clu clusterin involved_in ISO (PMID:20068069) UniProt PMID:20068069 NCBI chrNW_004955403:50,160,598...50,175,876
Ensembl chrNW_004955403:50,160,598...50,175,876
JBrowse link
G Disc1 DISC1 scaffold protein acts_upstream_of_or_within ISO (PMID:20880836) MGI PMID:20880836 NCBI chrNW_004955492:6,946,528...7,239,328
Ensembl chrNW_004955492:6,953,389...7,239,328
JBrowse link
G Egf epidermal growth factor involved_in ISO (PMID:20208556) BHF-UCL PMID:20208556 NCBI chrNW_004955496:325,954...401,430
Ensembl chrNW_004955496:328,075...401,569
JBrowse link
G Fbxo22 F-box protein 22 acts_upstream_of_or_within ISO (PMID:19319192) MGI PMID:19319192 NCBI chrNW_004955450:1,152,383...1,171,257
Ensembl chrNW_004955450:1,152,383...1,171,250
JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in ISO (PMID:20208556)
(PMID:27238018)
BHF-UCL
UniProt
PMID:20208556 PMID:27238018 NCBI chrNW_004955471:6,852,459...7,026,590
Ensembl chrNW_004955471:6,848,101...6,955,881
JBrowse link
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in ISO (PMID:22045699) ParkinsonsUK-UCL PMID:22045699 NCBI chrNW_004955433:14,609,275...14,621,774
Ensembl chrNW_004955433:14,608,375...14,621,839
JBrowse link
G L3mbtl3 L3MBTL histone methyl-lysine binding protein 3 involved_in ISO (PMID:29691401) UniProt PMID:29691401 NCBI chrNW_004955436:10,900,521...11,014,259
Ensembl chrNW_004955436:10,920,075...11,013,520
JBrowse link
G Laptm5 lysosomal protein transmembrane 5 involved_in ISO (PMID:24638062)
(PMID:18619870)
ARUK-UCL PMID:18619870 PMID:24638062 NCBI chrNW_004955452:9,335,481...9,358,177
Ensembl chrNW_004955452:9,334,587...9,358,444
JBrowse link
G Mtor mechanistic target of rapamycin kinase acts_upstream_of ISO (PMID:36608670) UniProt PMID:36608670 NCBI chrNW_004955486:2,487,642...2,599,694
Ensembl chrNW_004955486:2,487,642...2,599,694
JBrowse link
G Pten phosphatase and tensin homolog involved_in ISO (PMID:21241890) BHF-UCL PMID:21241890 NCBI chrNW_004955425:5,007,811...5,091,829
Ensembl chrNW_004955425:5,014,147...5,091,829
JBrowse link
G Ptk2 protein tyrosine kinase 2 involved_in ISO (PMID:18206965) UniProt PMID:18206965 NCBI chrNW_004955461:14,337,914...14,622,779
Ensembl chrNW_004955461:14,337,914...14,556,931
JBrowse link
G Ptk2b protein tyrosine kinase 2 beta involved_in ISO (PMID:19880522) UniProt PMID:19880522 NCBI chrNW_004955403:49,856,056...49,970,800
Ensembl chrNW_004955403:49,855,541...49,973,225
JBrowse link
G