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ONTOLOGY REPORT - ANNOTATIONS

Term:signal transduction involved in regulation of gene expression
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Accession:GO:0023019 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of gene expression as a consequence of a process in which a signal is released and/or conveyed from one location to another.
Synonyms:related_synonym: regulation of gene expression as a consequence of signal transmission


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signal transduction involved in regulation of gene expression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd74 CD74 molecule involved_in ISO (PMID:23736979) RGD PMID:23736979 NCBI chr18:56,527,071...56,536,406
Ensembl chr18:54,256,778...54,266,003 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr 5:102,352,364...102,355,720
Ensembl chr 5:97,306,431...97,309,783 		JBrowse link
G Dand5 DAN domain BMP antagonist family member 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:40,231,061...40,245,329
Ensembl chr19:23,334,164...23,339,589 		JBrowse link
G Edn1 endothelin 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:16820593)		 Ensembl
RGD		 PMID:16820593 GO_REF:0000107 NCBI chr17:22,660,799...22,666,687
Ensembl chr17:22,454,420...22,460,885 		JBrowse link
G Epcam epithelial cell adhesion molecule involved_in ISO
IEA		 (PMID:19136966)
GO_REF:0000107		 RGD
Ensembl		 PMID:19136966 GO_REF:0000107 NCBI chr 6:12,633,715...12,649,678
Ensembl chr 6:6,878,237...6,896,127 		JBrowse link
G Fgf5 fibroblast growth factor 5 acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr14:11,627,906...11,650,243
Ensembl chr14:11,325,334...11,345,997 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:18462699) RGD PMID:18462699 NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:18462699) RGD PMID:18462699 NCBI chr15:41,635,572...41,707,252
Ensembl chr15:37,459,601...37,505,636 		JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr 6:129,152,836...129,154,875
Ensembl chr 6:123,388,072...123,390,111 		JBrowse link
G Hnf4a hepatocyte nuclear factor 4, alpha acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr 3:172,606,220...172,667,758
Ensembl chr 3:152,186,787...152,248,320 		JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta involved_in ISO (PMID:9346484) RGD PMID:9346484 NCBI chr16:76,021,968...76,075,717
Ensembl chr16:69,319,554...69,373,250 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO (PMID:18462699) RGD PMID:18462699 NCBI chr 1:133,756,601...133,759,207
Ensembl chr 1:133,756,601...133,759,198 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:97169 (PMID:21465616) RGD PMID:21465616 NCBI chr14:77,185,802...77,189,735
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:97168 (PMID:21465616)
GO_REF:0000107		 RGD
Ensembl		 PMID:21465616 GO_REF:0000107 NCBI chr17:11,102,284...11,107,949
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Neurod1 neuronal differentiation 1 acts_upstream_of_or_within ISO (PMID:18462699) RGD PMID:18462699 NCBI chr 3:84,766,483...84,770,454
Ensembl chr 3:64,359,395...64,363,649 		JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 involved_in ISO
IEA		 (PMID:34721373)
GO_REF:0000107		 RGD
Ensembl		 PMID:34721373 GO_REF:0000107 NCBI chr 2:226,689,745...226,805,897
Ensembl chr 2:224,016,214...224,110,404 		JBrowse link
G Nfkbia NFKB inhibitor alpha involved_in ISO (PMID:25038658) RGD PMID:25038658 NCBI chr 6:78,593,844...78,597,307
Ensembl chr 6:72,858,712...72,861,941 		JBrowse link
G P2ry1 purinergic receptor P2Y1 involved_in IDA PMID:20847060 BHF-UCL PMID:20847060 RGD:8554370 NCBI chr 2:147,391,661...147,397,870
Ensembl chr 2:145,241,849...145,248,457 		JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 involved_in IMP PMID:22073128 BHF-UCL PMID:22073128 RGD:8554355 NCBI chr13:94,839,484...94,871,295
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr14:33,360,027...33,408,604
Ensembl chr14:33,005,839...33,054,335 		JBrowse link
G Pla2g10 phospholipase A2, group X involved_in ISO (PMID:20844270) RGD PMID:20844270 NCBI chr10:2,104,927...2,117,998
Ensembl chr10:1,597,761...1,609,000 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in ISO
IEA		 (PMID:1406630)
GO_REF:0000107		 RGD
Ensembl		 PMID:1406630 GO_REF:0000107 NCBI chr 1:212,354,336...212,364,815
Ensembl chr 1:202,924,945...202,935,484 		JBrowse link
G Smad2 SMAD family member 2 involved_in IMP PMID:22073128 BHF-UCL PMID:22073128 RGD:8554355 NCBI chr18:72,124,792...72,193,345
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Smad3 SMAD family member 3 involved_in IMP PMID:22073128 BHF-UCL PMID:22073128 RGD:8554355 NCBI chr 8:73,022,204...73,132,324
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in ISO
IEA		 (PMID:21822258)
GO_REF:0000107		 RGD
Ensembl		 PMID:21822258 GO_REF:0000107 NCBI chr10:73,335,519...73,342,549
Ensembl chr10:72,839,274...72,845,336 		JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr 1:181,387,851...181,392,762
Ensembl chr 1:181,388,684...181,392,593 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr 1:52,298,104...52,309,813
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
G Traf2 Tnf receptor-associated factor 2 involved_in ISO
IEA		 (PMID:21822258)
GO_REF:0000107		 RGD
Ensembl		 PMID:21822258 GO_REF:0000107 NCBI chr 3:28,740,098...28,764,752
Ensembl chr 3:8,341,951...8,366,538 		JBrowse link
G Traf3ip2 Traf3 interacting protein 2 involved_in ISO (PMID:21822258) RGD PMID:21822258 NCBI chr20:44,565,992...44,609,240
Ensembl chr20:43,011,450...43,054,667 		JBrowse link
G Traf5 TNF receptor-associated factor 5 involved_in ISO
IEA		 (PMID:21822258)
GO_REF:0000107		 RGD
Ensembl		 PMID:21822258 GO_REF:0000107 NCBI chr13:106,100,921...106,149,724
Ensembl chr13:103,572,314...103,618,709 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      signal transduction 7301
        signal transduction involved in regulation of gene expression 34
Path 2
Term Annotations click to browse term
  biological_process 20558
    biological regulation 13833
      regulation of biological process 13394
        regulation of cellular process 13030
          regulation of metabolic process 6786
            regulation of macromolecule metabolic process 6240
              regulation of macromolecule biosynthetic process 5369
                regulation of gene expression 5252
                  signal transduction involved in regulation of gene expression 34
paths to the root