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ONTOLOGY REPORT - ANNOTATIONS


Term:neurogenesis
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Accession:GO:0022008 term browser browse the term
Definition:Generation of cells within the nervous system.
Synonyms:exact_synonym: nervous system cell generation
 related_synonym: neural cell differentiation
 xref: Wikipedia:Neurogenesis


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neurogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd11 ankyrin repeat domain containing 11 acts_upstream_of_or_within ISO (PMID:25556659) MGI PMID:25556659 NCBI chrNW_004955541:2,921,230...3,033,612
Ensembl chrNW_004955541:2,919,631...2,961,445
JBrowse link
G Ascl1 achaete-scute family bHLH transcription factor 1 involved_in ISO (PMID:19008346) UniProt PMID:19008346 NCBI chrNW_004955405:37,941,243...37,943,641
Ensembl chrNW_004955405:37,941,243...37,943,641
JBrowse link
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 acts_upstream_of_or_within ISO (PMID:19666602) MGI PMID:19666602 NCBI chrNW_004955555:869,508...892,510
Ensembl chrNW_004955555:869,325...893,542
JBrowse link
G Brinp1 BMP/retinoic acid inducible neural specific 1 acts_upstream_of ISO (PMID:24528488) MGI PMID:24528488 NCBI chrNW_004955419:8,529,213...8,704,113
Ensembl chrNW_004955419:8,529,177...8,704,113
JBrowse link
G Cdk5rap2 CDK5 regulatory subunit associated protein 2 involved_in ISO (PMID:20460369) UniProt PMID:20460369 NCBI chrNW_004955419:7,412,177...7,606,883
Ensembl chrNW_004955419:7,412,331...7,610,353
JBrowse link
G Cep120 centrosomal protein 120 acts_upstream_of_or_within ISO (PMID:17875675) MGI PMID:17875675 NCBI chrNW_004955521:1,452,514...1,504,763
Ensembl chrNW_004955521:1,454,102...1,504,763
JBrowse link
G Chac1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 involved_in ISO (PMID:22445366) UniProt PMID:22445366 NCBI chrNW_004955416:7,828,917...7,831,368
Ensembl chrNW_004955416:7,828,482...7,832,391
JBrowse link
G Cln5 CLN5 intracellular trafficking protein involved_in ISO (PMID:10992246) UniProt PMID:10992246 NCBI chrNW_004955404:30,229,632...30,235,677
Ensembl chrNW_004955404:30,229,632...30,235,679
JBrowse link
G Coq7 coenzyme Q7, hydroxylase acts_upstream_of_or_within ISO (PMID:11716496) MGI PMID:11716496 NCBI chrNW_004955442:3,026,458...3,033,582
Ensembl chrNW_004955442:3,025,484...3,033,582
JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 ISO RGD PMID:18434527 RGD:11352690 NCBI chrNW_004955440:3,456,165...3,460,024
Ensembl chrNW_004955440:3,455,153...3,460,109
JBrowse link
G Dagla diacylglycerol lipase alpha acts_upstream_of_or_within ISO (PMID:20147530) MGI PMID:20147530 NCBI chrNW_004955511:5,952,134...5,997,280
Ensembl chrNW_004955511:5,952,087...5,974,172
JBrowse link
G Daglb diacylglycerol lipase beta acts_upstream_of_or_within ISO (PMID:20147530) MGI PMID:20147530 NCBI chrNW_004955460:13,226,574...13,268,060
Ensembl chrNW_004955460:13,226,693...13,267,449
JBrowse link
G Dbndd2 dysbindin domain containing 2 acts_upstream_of_or_within ISO (PMID:18096156) MGI PMID:18096156 NCBI chrNW_004955445:11,931,996...11,936,534
Ensembl chrNW_004955445:11,931,200...11,975,660
JBrowse link
G Dchs1 dachsous cadherin-related 1 involved_in ISO (PMID:24056717) UniProt PMID:24056717 NCBI chrNW_004955414:22,331,590...22,365,761
Ensembl chrNW_004955414:22,332,059...22,351,576
JBrowse link
G Dorip1 dopamine receptor interacting protein 1 acts_upstream_of_or_within ISO (PMID:37248637) MGI PMID:37248637 NCBI chrNW_004955409:17,014,194...17,023,953
Ensembl chrNW_004955409:17,012,125...17,024,784
JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within ISO (PMID:18794345) MGI PMID:18794345 NCBI chrNW_004955430:19,280,460...19,287,060
Ensembl chrNW_004955430:19,281,602...19,286,867
JBrowse link
G Ephb1 EPH receptor B1 involved_in ISO (PMID:18057206) UniProt PMID:18057206 NCBI chrNW_004955501:3,424,112...3,821,727
Ensembl chrNW_004955501:3,423,977...3,821,890
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in ISO (PMID:24874740) UniProt PMID:24874740 NCBI chrNW_004955556:745,175...812,215
Ensembl chrNW_004955556:748,231...813,133
JBrowse link
G Etv6 ETS variant transcription factor 6 acts_upstream_of_or_within ISO (PMID:9250681) MGI PMID:9250681 NCBI chrNW_004955413:8,698,412...8,912,011
Ensembl chrNW_004955413:8,698,415...8,909,299
JBrowse link
G Fabp7 fatty acid binding protein 7 acts_upstream_of_or_within ISO (PMID:18001149) MGI PMID:18001149 NCBI chrNW_004955436:4,642,584...4,646,172
Ensembl chrNW_004955436:4,642,584...4,646,172
JBrowse link
G Fam168b family with sequence similarity 168 member B acts_upstream_of_or_within ISO (PMID:20716133) MGI PMID:20716133 NCBI chrNW_004955459:534,682...567,651
Ensembl chrNW_004955459:534,682...567,652
JBrowse link
G Fat4 FAT atypical cadherin 4 involved_in ISO (PMID:24056717) UniProt PMID:24056717 NCBI chrNW_004955428:15,621,333...15,812,167
Ensembl chrNW_004955428:15,622,498...15,810,896
JBrowse link
G Fgf13 fibroblast growth factor 13 acts_upstream_of_or_within ISO (PMID:34010636) MGI PMID:34010636 NCBI chrNW_004955489:6,122,707...6,621,624
Ensembl chrNW_004955489:6,123,633...6,621,692
JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within ISO (PMID:18184563) MGI PMID:18184563 NCBI chrNW_004955409:31,672,960...31,674,970 JBrowse link
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 involved_in ISO (PMID:36720500) UniProt PMID:36720500 NCBI chrNW_004955543:42,524...49,835
Ensembl chrNW_004955543:40,728...53,111
JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A acts_upstream_of_or_within ISO (PMID:12941447) MGI PMID:12941447 NCBI chrNW_004955442:8,171,114...8,565,187
Ensembl chrNW_004955442:8,174,232...8,562,059
JBrowse link
G Hmga1 high mobility group AT-hook 1 acts_upstream_of_or_within ISO (PMID:22797695) MGI PMID:22797695 NCBI chrNW_004955437:2,478,414...2,486,809
Ensembl chrNW_004955437:2,478,414...2,486,809
JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO (PMID:11062468) MGI PMID:11062468 NCBI chrNW_004955514:1,906,189...2,042,357
Ensembl chrNW_004955514:1,906,502...2,038,889
JBrowse link
G Ift20 intraflagellar transport 20 acts_upstream_of_or_within ISO (PMID:21734285) MGI PMID:21734285 NCBI chrNW_004955481:4,799,548...4,807,751
Ensembl chrNW_004955481:4,799,548...4,807,751
JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in ISO (PMID:30655546) MGI PMID:30655546 NCBI chrNW_004955422:19,557,498...19,565,044
Ensembl chrNW_004955422:19,557,498...19,565,036
JBrowse link
G Kiaa0319 KIAA0319 ortholog NOT|acts_upstream_of_or_within ISO (PMID:27510895) MGI PMID:27510895 NCBI chrNW_004955483:2,404,061...2,463,210
Ensembl chrNW_004955483:2,413,181...2,462,735
JBrowse link
G Lemd2 LEM domain nuclear envelope protein 2 involved_in ISO (PMID:25790465) UniProt PMID:25790465 NCBI chrNW_004955437:2,163,977...2,178,783
Ensembl chrNW_004955437:2,163,878...2,176,665
JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within ISO (PMID:18184563) MGI PMID:18184563 NCBI chrNW_004955419:3,999,364...4,019,543
Ensembl chrNW_004955419:3,998,242...4,018,875
JBrowse link
G Lig4 DNA ligase 4 acts_upstream_of ISO (PMID:16777961)
(PMID:10716994), (PMID:9875844)
MGI PMID:9875844 PMID:10716994 PMID:16777961 NCBI chrNW_004955404:3,606,077...3,615,193
Ensembl chrNW_004955404:3,606,077...3,615,193
JBrowse link
G Lmnb1 lamin B1 ISO RGD PMID:17432957 RGD:10044251 NCBI chrNW_004955521:4,583,691...4,612,271
Ensembl chrNW_004955521:4,583,671...4,612,271
JBrowse link
G Lpar1 lysophosphatidic acid receptor 1 ISO RGD PMID:9753172 RGD:2317716 NCBI chrNW_004955419:16,190,109...16,324,702
Ensembl chrNW_004955419:16,191,244...16,325,602
JBrowse link
G Myd88 MYD88 innate immune signal transduction adaptor acts_upstream_of_or_within ISO (PMID:18509511) MGI PMID:18509511 NCBI chrNW_004955427:25,553,589...25,557,654
Ensembl chrNW_004955427:25,553,589...25,559,138
JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO (PMID:12111813), (PMID:18509511), (PMID:19409882) MGI PMID:12111813 PMID:18509511 PMID:19409882 NCBI chrNW_004955451:16,445,338...16,449,243
Ensembl chrNW_004955451:16,445,338...16,450,062
JBrowse link
G Ndufs2 NADH:ubiquinone oxidoreductase core subunit S2 involved_in ISO (PMID:31297047) UniProt PMID:31297047 NCBI chrNW_004955468:12,961,873...12,971,278
Ensembl chrNW_004955468:12,961,915...12,971,095
JBrowse link
G Nell2 neural EGFL like 2 involved_in ISO PMID:32597395 UniProt PMID:32597395 RGD:401827137 NCBI chrNW_004955500:3,669,893...4,049,765
Ensembl chrNW_004955500:3,669,837...4,080,443
JBrowse link
G Neurog1 neurogenin 1 acts_upstream_of_or_within ISO (PMID:18184563) MGI PMID:18184563 NCBI chrNW_004955408:30,693,893...30,695,453
Ensembl chrNW_004955408:30,694,496...30,695,221
JBrowse link
G Neurog2 neurogenin 2 acts_upstream_of_or_within ISO (PMID:19050759) MGI PMID:19050759 NCBI chrNW_004955457:14,268,078...14,287,050 JBrowse link
G Nfia nuclear factor I A acts_upstream_of_or_within ISO (PMID:31128945) MGI PMID:31128945 NCBI chrNW_004955423:27,799,976...28,108,307
Ensembl chrNW_004955423:27,806,873...28,112,268
JBrowse link
G Nfib nuclear factor I B acts_upstream_of_or_within ISO (PMID:31128945) MGI PMID:31128945 NCBI chrNW_004955434:17,192,188...17,603,503
Ensembl chrNW_004955434:17,198,571...17,415,084
JBrowse link
G Nfix nuclear factor I X involved_in
acts_upstream_of_or_within
ISO (PMID:23042739), (PMID:23776487)
(PMID:27965439)
(PMID:31128945), (PMID:33004674)
MGI PMID:23042739 PMID:23776487 PMID:27965439 PMID:31128945 PMID:33004674 NCBI chrNW_004955415:32,055,926...32,121,611
Ensembl chrNW_004955415:32,055,375...32,117,833
JBrowse link
G Nkx6-1 NK6 homeobox 1 ISO RGD PMID:18687784 RGD:2311166 NCBI chrNW_004955474:5,211,281...5,214,785 JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 acts_upstream_of_or_within ISO (PMID:21697390) MGI PMID:21697390 NCBI chrNW_004955402:11,699,434...11,742,899
Ensembl chrNW_004955402:11,699,434...11,742,899
JBrowse link
G Ntn5 netrin 5 involved_in ISO (PMID:26858598) UniProt PMID:26858598 NCBI chrNW_004955559:1,892,982...1,901,759 JBrowse link
G Nup133 nucleoporin 133 acts_upstream_of_or_within ISO (PMID:18539113) MGI PMID:18539113 NCBI chrNW_004955492:8,583,902...8,641,891
Ensembl chrNW_004955492:8,583,869...8,643,433
JBrowse link
G Omp olfactory marker protein acts_upstream_of_or_within ISO (PMID:18184563) MGI PMID:18184563 NCBI chrNW_004955414:14,673,449...14,677,141 JBrowse link
G Pcsk1 proprotein convertase subtilisin/kexin type 1 ISO RGD PMID:18781386 RGD:2308890 NCBI chrNW_004955418:16,181,809...16,224,274
Ensembl chrNW_004955418:16,181,771...16,224,603
JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 involved_in ISO (PMID:12552133) HGNC-UCL PMID:12552133 RGD:629554 NCBI chrNW_004955464:4,424,583...4,439,805
Ensembl chrNW_004955464:4,425,435...4,439,842
JBrowse link
G Phgdh phosphoglycerate dehydrogenase acts_upstream_of_or_within ISO (PMID:19114063) MGI PMID:19114063 NCBI chrNW_004955435:22,757,473...22,803,123
Ensembl chrNW_004955435:22,757,454...22,803,123
JBrowse link
G Prdm12 PR/SET domain 12 acts_upstream_of_or_within ISO (PMID:19050759) MGI PMID:19050759 NCBI chrNW_004955513:612,566...627,848
Ensembl chrNW_004955513:612,566...627,323
JBrowse link
G Prdm13 PR/SET domain 13 acts_upstream_of_or_within ISO (PMID:19050759) MGI PMID:19050759 NCBI chrNW_004955411:25,481,601...25,489,049
Ensembl chrNW_004955411:25,481,741...25,489,049
JBrowse link
G Prdm16 PR/SET domain 16 acts_upstream_of_or_within ISO (PMID:19050759) MGI PMID:19050759 NCBI chrNW_004955486:8,139,848...8,327,788
Ensembl chrNW_004955486:8,137,531...8,327,977
JBrowse link
G Prdm8 PR/SET domain 8 acts_upstream_of_or_within ISO (PMID:19050759) MGI PMID:19050759 NCBI chrNW_004955433:4,443,339...4,463,687
Ensembl chrNW_004955433:4,459,669...4,462,928
JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:9160754)
(PMID:11738035)
MGI PMID:9160754 PMID:11738035 NCBI chrNW_004955523:2,128,529...2,210,737
Ensembl chrNW_004955523:2,128,529...2,210,737
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 acts_upstream_of_or_within ISO (PMID:25800779) MGI PMID:25800779 NCBI chrNW_004955495:6,990,565...7,002,492
Ensembl chrNW_004955495:6,987,182...7,002,492
JBrowse link
G Rarb retinoic acid receptor beta acts_upstream_of_or_within ISO (PMID:18443282) MGI PMID:18443282 NCBI chrNW_004955430:17,067,536...17,457,558
Ensembl chrNW_004955430:17,295,174...17,460,045
JBrowse link
G Rogdi rogdi atypical leucine zipper involved_in ISO (PMID:22482807) HGNC PMID:22482807 NCBI chrNW_004955442:12,694,197...12,700,181
Ensembl chrNW_004955442:12,694,197...12,700,181
JBrowse link
G Six1 SIX homeobox 1 involved_in ISO (PMID:19027001) UniProt PMID:19027001 NCBI chrNW_004955466:8,961,597...8,966,069
Ensembl chrNW_004955466:8,961,597...8,966,069
JBrowse link
G Slc1a1 solute carrier family 1 member 1 involved_in ISO (PMID:29720605) MGI PMID:29720605 NCBI chrNW_004955434:8,790,685...8,879,757
Ensembl chrNW_004955434:8,790,685...8,879,757
JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO (PMID:22513373) MGI PMID:22513373 NCBI chrNW_004955495:2,021,671...2,105,155
Ensembl chrNW_004955495:2,021,566...2,105,397
JBrowse link
G Smarce1 SWI/SNF related BAF chromatin remodeling complex subunit E1 acts_upstream_of_or_within ISO (PMID:19781646) MGI PMID:19781646 NCBI chrNW_004955451:15,129,619...15,147,487
Ensembl chrNW_004955451:15,129,132...15,147,488
JBrowse link
G Spock1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 involved_in ISO (PMID:10640720) UniProt PMID:10640720 NCBI chrNW_004955408:31,954,622...32,465,463
Ensembl chrNW_004955408:31,957,882...32,465,461
JBrowse link
G Tacc1 transforming acidic coiled-coil containing protein 1 acts_upstream_of_or_within ISO (PMID:17920017) MGI PMID:17920017 NCBI chrNW_004955463:14,314,201...14,409,848
Ensembl chrNW_004955463:14,344,010...14,405,174
JBrowse link
G Tacc2 transforming acidic coiled-coil containing protein 2 acts_upstream_of_or_within ISO (PMID:17920017) MGI PMID:17920017 NCBI chrNW_004955477:338,990...552,100
Ensembl chrNW_004955477:338,887...552,360
JBrowse link
G Tacc3 transforming acidic coiled-coil containing protein 3 acts_upstream_of_or_within ISO (PMID:17920017) MGI PMID:17920017 NCBI chrNW_004955514:973,457...986,640
Ensembl chrNW_004955514:975,176...986,686
JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (PMID:33795231) UniProt PMID:33795231 NCBI chrNW_004955451:2,458,612...2,466,264
Ensembl chrNW_004955451:2,457,568...2,466,639
JBrowse link
G Tlr4 toll like receptor 4 acts_upstream_of_or_within ISO (PMID:18509511) MGI PMID:18509511 NCBI chrNW_004955419:10,190,937...10,201,896
Ensembl chrNW_004955419:10,191,120...10,202,135
JBrowse link
G Ttyh1 tweety family member 1 acts_upstream_of_or_within ISO (PMID:31079925) MGI PMID:31079925 NCBI chrNW_004955567:1,523,534...1,538,963
Ensembl chrNW_004955567:1,523,534...1,538,963
JBrowse link
G Ulk4 unc-51 like kinase 4 acts_upstream_of_or_within ISO (PMID:27300315) MGI PMID:27300315 NCBI chrNW_004955420:28,633,011...29,031,161
Ensembl chrNW_004955420:28,633,726...29,028,025
JBrowse link
G Vxn vexin involved_in ISO (PMID:29518376) UniProt PMID:29518376 NCBI chrNW_004955444:12,659,894...12,684,919
Ensembl chrNW_004955444:12,659,776...12,685,055
JBrowse link
G Wdr62 WD repeat domain 62 involved_in ISO (PMID:20890278) UniProt PMID:20890278 NCBI chrNW_004955468:2,504,181...2,545,982
Ensembl chrNW_004955468:2,503,885...2,545,255
JBrowse link
G Wnt1 Wnt family member 1 involved_in ISO (PMID:14557550) ParkinsonsUK-UCL PMID:14557550 NCBI chrNW_004955500:7,797,063...7,811,142
Ensembl chrNW_004955500:7,797,060...7,811,167
JBrowse link
G Wnt3a Wnt family member 3A involved_in ISO (PMID:14557550) ParkinsonsUK-UCL PMID:14557550 NCBI chrNW_004955581:351,375...382,541
Ensembl chrNW_004955581:350,889...382,541
JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO (PMID:14557550) ParkinsonsUK-UCL PMID:14557550 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
G Xrcc2 X-ray repair cross complementing 2 acts_upstream_of_or_within ISO (PMID:17116431)
(PMID:16777961)
MGI PMID:16777961 PMID:17116431 NCBI chrNW_004955491:6,579,443...6,629,410
Ensembl chrNW_004955491:6,599,085...6,629,439
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 acts_upstream_of ISO (PMID:9875844) MGI PMID:9875844 NCBI chrNW_004955418:27,174,510...27,426,245
Ensembl chrNW_004955418:27,173,659...27,426,264
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 acts_upstream_of ISO (PMID:10716994) MGI PMID:10716994 NCBI chrNW_004955453:16,967,453...17,054,634
Ensembl chrNW_004955453:16,967,453...17,054,634
JBrowse link
G Xrcc6 X-ray repair cross complementing 6 acts_upstream_of ISO (PMID:10716994) MGI PMID:10716994 NCBI chrNW_004955413:27,135,785...27,158,344
Ensembl chrNW_004955413:27,135,805...27,159,750
JBrowse link
adrenal chromaffin cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:12361965) MGI PMID:12361965 NCBI chrNW_004955405:37,941,243...37,943,641
Ensembl chrNW_004955405:37,941,243...37,943,641
JBrowse link
G Insm1 INSM transcriptional repressor 1 involved_in ISO (PMID:18094025) UniProt PMID:18094025 NCBI chrNW_004955415:28,396,176...28,398,114 JBrowse link
amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Barhl2 BarH like homeobox 2 acts_upstream_of_or_within ISO (PMID:14998930) MGI PMID:14998930 NCBI chrNW_004955423:3,516,973...3,522,459
Ensembl chrNW_004955423:3,516,660...3,522,536
JBrowse link
G Bhlhe22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:17092954) MGI PMID:17092954 NCBI chrNW_004955444:14,458,307...14,460,441 JBrowse link
G Foxn4 forkhead box N4 acts_upstream_of_or_within
involved_in
ISO (PMID:15363391) MGI
UniProt
PMID:15363391 NCBI chrNW_004955455:9,182,405...9,210,365
Ensembl chrNW_004955455:9,183,475...9,210,506
JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of ISO (PMID:15976303) MGI PMID:15976303 NCBI chrNW_004955458:3,388,402...3,398,040
Ensembl chrNW_004955458:3,388,402...3,398,040
JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of ISO (PMID:16038893) MGI PMID:16038893 NCBI chrNW_004955420:14,565,921...14,568,447
Ensembl chrNW_004955420:14,564,283...14,568,447
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chrNW_004955456:3,617,988...3,721,791
Ensembl chrNW_004955456:3,635,380...3,721,791
JBrowse link
G Neurod1 neuronal differentiation 1 involved_in ISO (PMID:11861467) UniProt PMID:11861467 NCBI chrNW_004955403:15,595,888...15,600,040
Ensembl chrNW_004955403:15,595,888...15,600,040
JBrowse link
G Neurod4 neuronal differentiation 4 involved_in ISO (PMID:11861467) UniProt PMID:11861467 NCBI chrNW_004955458:2,138,849...2,146,636
Ensembl chrNW_004955458:2,138,849...2,146,636
JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in
acts_upstream_of_or_within
ISO (PMID:17075007)
(PMID:17301087)
UniProt
MGI
PMID:17075007 PMID:17301087 NCBI chrNW_004955429:5,807,804...5,809,522
Ensembl chrNW_004955429:5,808,124...5,809,522
JBrowse link
G Rorb RAR related orphan receptor B involved_in ISO (PMID:23652001) UniProt PMID:23652001 NCBI chrNW_004955512:4,362,287...4,541,432
Ensembl chrNW_004955512:4,362,287...4,541,445
JBrowse link
G Tgif1 TGFB induced factor homeobox 1 acts_upstream_of ISO (PMID:18973577) MGI PMID:18973577 NCBI chrNW_004955402:7,130,809...7,138,945
Ensembl chrNW_004955402:7,129,484...7,138,340
JBrowse link
G Tgif2 TGFB induced factor homeobox 2 acts_upstream_of ISO (PMID:18926818) MGI PMID:18926818 NCBI chrNW_004955422:25,024,359...25,042,568
Ensembl chrNW_004955422:25,024,359...25,041,459
JBrowse link
anterior commissure morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:22284184) MGI PMID:22284184 NCBI chrNW_004955444:14,458,307...14,460,441 JBrowse link
G Draxin dorsal inhibitory axon guidance protein involved_in ISO (PMID:23206892) UniProt PMID:23206892 NCBI chrNW_004955486:2,161,927...2,185,230
Ensembl chrNW_004955486:2,161,913...2,174,013
JBrowse link
G Fbxo45 F-box protein 45 acts_upstream_of_or_within ISO (PMID:19398581) MGI PMID:19398581 NCBI chrNW_004955420:12,714,749...12,727,600
Ensembl chrNW_004955420:12,714,608...12,726,113
JBrowse link
G Nfib nuclear factor I B involved_in ISO (PMID:19961580) UniProt PMID:19961580 NCBI chrNW_004955434:17,192,188...17,603,503
Ensembl chrNW_004955434:17,198,571...17,415,084
JBrowse link
G Nr2e1 nuclear receptor subfamily 2 group E member 1 acts_upstream_of_or_within ISO (PMID:11997145) MGI PMID:11997145 NCBI chrNW_004955411:33,303,765...33,325,221
Ensembl chrNW_004955411:33,303,655...33,325,376
JBrowse link
G Plxna4 plexin A4 acts_upstream_of_or_within ISO (PMID:15814794) MGI PMID:15814794 NCBI chrNW_004955410:35,281,042...35,714,094
Ensembl chrNW_004955410:35,281,648...35,713,453
JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in
acts_upstream_of_or_within
ISO (PMID:23206892)
(PMID:21055390)
UniProt
MGI
PMID:21055390 PMID:23206892 NCBI chrNW_004955414:15,166,349...15,178,284
Ensembl chrNW_004955414:15,166,349...15,178,284
JBrowse link
G Wdr47 WD repeat domain 47 acts_upstream_of_or_within ISO (PMID:29078390) MGI PMID:29078390 NCBI chrNW_004955435:12,414,964...12,479,883
Ensembl chrNW_004955435:12,414,600...12,466,040
JBrowse link
anterior/posterior axon guidance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcc DCC netrin 1 receptor acts_upstream_of_or_within ISO (PMID:18479186) MGI PMID:18479186 NCBI chrNW_004955402:37,123,112...38,218,876
Ensembl chrNW_004955402:37,123,795...38,218,472
JBrowse link
G Ntn1 netrin 1 acts_upstream_of_or_within ISO (PMID:18479186) MGI PMID:18479186 NCBI chrNW_004955467:7,795,175...7,991,597
Ensembl chrNW_004955467:7,794,735...7,991,695
JBrowse link
G Unc5a unc-5 netrin receptor A acts_upstream_of_or_within ISO (PMID:18479186) MGI PMID:18479186 NCBI chrNW_004955408:29,071,812...29,132,744
Ensembl chrNW_004955408:29,071,792...29,132,037
JBrowse link
G Unc5b unc-5 netrin receptor B acts_upstream_of_or_within ISO (PMID:18479186) MGI PMID:18479186 NCBI chrNW_004955437:20,120,996...20,199,877
Ensembl chrNW_004955437:20,120,946...20,199,877
JBrowse link
G Unc5c unc-5 netrin receptor C acts_upstream_of_or_within ISO (PMID:18479186) MGI PMID:18479186 NCBI chrNW_004955405:5,791,286...6,049,952
Ensembl chrNW_004955405:5,797,590...5,950,544
JBrowse link
apical dendrite arborization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cc2d1a coiled-coil and C2 domain containing 1A acts_upstream_of_or_within ISO (PMID:26826102) MGI PMID:26826102 NCBI chrNW_004955415:32,667,832...32,682,945
Ensembl chrNW_004955415:32,668,066...32,682,571
JBrowse link
astrocyte activation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adora2a adenosine A2a receptor ISO RGD PMID:12838511 RGD:1625689 NCBI chrNW_004955455:7,886,720...7,906,214
Ensembl chrNW_004955455:7,895,974...7,906,505
JBrowse link
G Ager advanced glycosylation end-product specific receptor involved_in ISO (PMID:15457210) ARUK-UCL PMID:15457210 NCBI chrNW_004955437:645,482...648,607
Ensembl chrNW_004955437:645,897...648,479
JBrowse link
G Agt angiotensinogen acts_upstream_of_or_within ISO (PMID:9734405) MGI PMID:9734405 NCBI chrNW_004955492:7,863,662...7,874,863
Ensembl chrNW_004955492:7,866,833...7,873,357
JBrowse link
G App amyloid beta precursor protein involved_in ISO (PMID:18723082)
(PMID:15457210)
(PMID:20445063)
ARUK-UCL PMID:15457210 PMID:18723082 PMID:20445063 NCBI chrNW_004955407:25,725,259...25,973,582
Ensembl chrNW_004955407:25,722,849...25,974,268
JBrowse link
G Bace2 beta-secretase 2 ISO RGD PMID:21073551 RGD:13782176 NCBI chrNW_004955407:40,792,089...40,879,872
Ensembl chrNW_004955407:40,792,887...40,874,760
JBrowse link
G C1qa complement C1q A chain involved_in ISO (PMID:15269255) ARUK-UCL PMID:15269255 NCBI chrNW_004955452:2,753,362...2,756,220
Ensembl chrNW_004955452:2,752,970...2,756,488
JBrowse link
G C5ar1 complement C5a receptor 1 involved_in ISO (PMID:19561098) ARUK-UCL PMID:19561098 NCBI chrNW_004955574:1,221,942...1,229,634
Ensembl chrNW_004955574:1,221,187...1,231,655
JBrowse link
G Cntf ciliary neurotrophic factor ISO spinal cord astrocytes RGD PMID:11771938 RGD:1626172 NCBI chrNW_004955511:3,527,552...3,531,275
Ensembl chrNW_004955511:3,527,552...3,534,348
JBrowse link
G Egfr epidermal growth factor receptor ISO RGD PMID:16837601 RGD:1581900 NCBI chrNW_004955456:321,222...456,431 JBrowse link
G Ifng interferon gamma involved_in ISO (PMID:18375019)
(PMID:20368278)
ARUK-UCL PMID:18375019 PMID:20368278 NCBI chrNW_004955458:14,643,333...14,648,020
Ensembl chrNW_004955458:14,643,313...14,648,045
JBrowse link
G Ifngr1 interferon gamma receptor 1 involved_in ISO (PMID:17255335) ARUK-UCL PMID:17255335 NCBI chrNW_004955436:22,183,318...22,199,013 JBrowse link
G Il1b interleukin 1 beta acts_upstream_of_or_within ISO (PMID:28377412) MGI PMID:28377412 NCBI chrNW_004955470:1,486,936...1,491,888
Ensembl chrNW_004955470:1,486,967...1,491,947
JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO (PMID:26607664) MGI PMID:26607664 NCBI chrNW_004955451:16,445,338...16,449,243
Ensembl chrNW_004955451:16,445,338...16,450,062
JBrowse link
G Psen1 presenilin 1 involved_in ISO (PMID:20445063) ARUK-UCL PMID:20445063 NCBI chrNW_004955523:2,128,529...2,210,737
Ensembl chrNW_004955523:2,128,529...2,210,737
JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:23680462) MGI PMID:23680462 NCBI chrNW_004955479:9,963,377...9,991,670
Ensembl chrNW_004955479:9,964,170...9,993,165
JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (PMID:29073081) ARUK-UCL PMID:29073081 NCBI chrNW_004955437:7,780,886...7,785,597
Ensembl chrNW_004955437:7,780,679...7,785,697
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 ISO RGD PMID:34852714 RGD:155882542 NCBI chrNW_004955440:10,755,658...10,881,044
Ensembl chrNW_004955440:10,756,014...10,795,491
JBrowse link
astrocyte activation involved in immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G App amyloid beta precursor protein involved_in ISO (PMID:23152628) ARUK-UCL PMID:23152628 NCBI chrNW_004955407:25,725,259...25,973,582
Ensembl chrNW_004955407:25,722,849...25,974,268
JBrowse link
G Grn granulin precursor involved_in ISO (PMID:20026663) UniProt PMID:20026663 NCBI chrNW_004955451:17,368,600...17,371,981
Ensembl chrNW_004955451:17,368,428...17,372,377
JBrowse link
G Lrp1 LDL receptor related protein 1 involved_in ISO (PMID:23152628) ARUK-UCL PMID:23152628 NCBI chrNW_004955458:4,861,431...4,941,939
Ensembl chrNW_004955458:4,861,431...4,941,146
JBrowse link
G Psen1 presenilin 1 involved_in ISO (PMID:23152628) ARUK-UCL PMID:23152628 NCBI chrNW_004955523:2,128,529...2,210,737
Ensembl chrNW_004955523:2,128,529...2,210,737
JBrowse link
astrocyte cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apcdd1 APC down-regulated 1 acts_upstream_of_or_within ISO (PMID:22500632) MGI PMID:22500632 NCBI chrNW_004955402:1,932,685...1,947,680
Ensembl chrNW_004955402:1,930,037...1,947,765
JBrowse link
G Arhgef7 Rho guanine nucleotide exchange factor 7 ISO RGD PMID:17081755 RGD:2303059 NCBI chrNW_004955404:1,749,051...1,835,455
Ensembl chrNW_004955404:1,748,665...1,814,575
JBrowse link
G Hexb hexosaminidase subunit beta involved_in ISO (PMID:15155903) UniProt PMID:15155903 NCBI chrNW_004955425:25,942,341...25,961,312
Ensembl chrNW_004955425:25,942,278...25,961,312
JBrowse link
G Mmp14 matrix metallopeptidase 14 ISO RGD PMID:16265672 RGD:1582598 NCBI chrNW_004955409:37,438,924...37,448,704
Ensembl chrNW_004955409:37,440,541...37,448,437
JBrowse link
G Nr2e1 nuclear receptor subfamily 2 group E member 1 acts_upstream_of_or_within ISO (PMID:15371513) MGI PMID:15371513 NCBI chrNW_004955411:33,303,765...33,325,221
Ensembl chrNW_004955411:33,303,655...33,325,376
JBrowse link
G Scrib scribble planar cell polarity protein ISO RGD PMID:17081755 RGD:2303059 NCBI chrNW_004955454:2,461,526...2,482,734
Ensembl chrNW_004955454:2,461,760...2,482,098
JBrowse link
astrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ager advanced glycosylation end-product specific receptor acts_upstream_of_or_within ISO (PMID:22577135) MGI PMID:22577135 NCBI chrNW_004955437:645,482...648,607
Ensembl chrNW_004955437:645,897...648,479
JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (PMID:23688253) UniProt PMID:23688253 NCBI chrNW_004955411:3,478,943...3,486,541
Ensembl chrNW_004955411:3,478,033...3,486,604
JBrowse link
G Drd1 dopamine receptor D1 acts_upstream_of_or_within ISO (PMID:17360497) MGI PMID:17360497 NCBI chrNW_004955408:28,003,229...28,006,595
Ensembl chrNW_004955408:28,003,229...28,006,595
JBrowse link
G Eif2b5 eukaryotic translation initiation factor 2B subunit epsilon involved_in ISO (PMID:15723074) UniProt PMID:15723074 NCBI chrNW_004955420:23,313,405...23,322,748
Ensembl chrNW_004955420:23,309,378...23,322,698
JBrowse link
G Gfap glial fibrillary acidic protein acts_upstream_of_or_within ISO (PMID:11487638) MGI PMID:11487638 NCBI chrNW_004955451:17,695,835...17,703,894
Ensembl chrNW_004955451:17,695,835...17,703,268
JBrowse link
G Lamb2 laminin subunit beta 2 acts_upstream_of_or_within ISO (PMID:19907020) MGI PMID:19907020 NCBI chrNW_004955532:1,115,412...1,127,264
Ensembl chrNW_004955532:1,115,087...1,127,455
JBrowse link
G Lamc3 laminin subunit gamma 3 acts_upstream_of_or_within ISO (PMID:19907020) MGI PMID:19907020 NCBI chrNW_004955513:872,301...934,234
Ensembl chrNW_004955513:881,092...934,458
JBrowse link
G Plp1 proteolipid protein 1 acts_upstream_of_or_within ISO (PMID:24038504) MGI PMID:24038504 NCBI chrNW_004955548:781,522...797,246
Ensembl chrNW_004955548:781,015...797,935
JBrowse link
G Ror1 receptor tyrosine kinase like orphan receptor 1 ISO RGD PMID:15095375 RGD:11537371 NCBI chrNW_004955423:26,029,122...26,274,668
Ensembl chrNW_004955423:26,028,250...26,170,533
JBrowse link
G Ror2 receptor tyrosine kinase like orphan receptor 2 ISO RGD PMID:15095375 RGD:11537371 NCBI chrNW_004955515:313,612...554,751
Ensembl chrNW_004955515:313,604...553,774
JBrowse link
G S100a9 S100 calcium binding protein A9 acts_upstream_of_or_within ISO (PMID:22577135) MGI PMID:22577135 NCBI chrNW_004955592:90,647...93,842 JBrowse link
G Tlr4 toll like receptor 4 acts_upstream_of_or_within ISO (PMID:22577135) MGI PMID:22577135 NCBI chrNW_004955419:10,190,937...10,201,896
Ensembl chrNW_004955419:10,191,120...10,202,135
JBrowse link
G Tspan2 tetraspanin 2 acts_upstream_of_or_within ISO (PMID:24038504) MGI PMID:24038504 NCBI chrNW_004955435:18,344,320...18,371,248
Ensembl chrNW_004955435:18,344,320...18,372,534
JBrowse link
G Vim vimentin acts_upstream_of_or_within ISO (PMID:11487638) MGI PMID:11487638 NCBI chrNW_004955429:10,708,852...10,716,743
Ensembl chrNW_004955429:10,707,719...10,717,554
JBrowse link
astrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcc1 ATP binding cassette subfamily C member 1 (ABCC1 blood group) ISO RGD PMID:17141959 RGD:2303044 NCBI chrNW_004955442:729,322...858,826
Ensembl chrNW_004955442:729,316...860,290
JBrowse link
G Actr3 actin related protein 3 ISO RGD PMID:23843614 RGD:8553949 NCBI chrNW_004955459:15,216,914...15,284,013
Ensembl chrNW_004955459:15,216,914...15,284,013
JBrowse link
G Bmp2 bone morphogenetic protein 2 acts_upstream_of ISO (PMID:15882580) MGI PMID:15882580 NCBI chrNW_004955415:17,048,374...17,058,172
Ensembl chrNW_004955415:17,048,030...17,060,181
JBrowse link
G Cul4b cullin 4B involved_in ISO (PMID:26025376) MGI PMID:26025376 NCBI chrNW_004955572:1,308,491...1,365,147 JBrowse link
G Dab1 DAB adaptor protein 1 acts_upstream_of ISO (PMID:18848628) MGI PMID:18848628 NCBI chrNW_004955464:2,325,529...2,721,497
Ensembl chrNW_004955464:2,455,346...2,724,358
JBrowse link
G Eif2b5 eukaryotic translation initiation factor 2B subunit epsilon involved_in ISO (PMID:15723074) UniProt PMID:15723074 NCBI chrNW_004955420:23,313,405...23,322,748
Ensembl chrNW_004955420:23,309,378...23,322,698
JBrowse link
G Eomes eomesodermin involved_in ISO (PMID:30186101) MGI PMID:30186101 NCBI chrNW_004955430:19,280,460...19,287,060
Ensembl chrNW_004955430:19,281,602...19,286,867
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of ISO (PMID:12574417) MGI PMID:12574417 NCBI chrNW_004955514:1,030,244...1,038,590
Ensembl chrNW_004955514:1,025,600...1,038,590
JBrowse link
G Gap43 growth associated protein 43 acts_upstream_of_or_within ISO (PMID:15234344) MGI PMID:15234344 NCBI chrNW_004955427:15,696,549...15,791,279
Ensembl chrNW_004955427:15,695,963...15,791,327
JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISO (PMID:15156153) UniProt PMID:15156153 NCBI chrNW_004955486:8,700,212...8,701,581
Ensembl chrNW_004955486:8,700,162...8,701,748
JBrowse link
G Hmbs hydroxymethylbilane synthase ISO RGD PMID:12917623 RGD:2301689 NCBI chrNW_004955412:20,192,519...20,202,635
Ensembl chrNW_004955412:20,192,522...20,202,635
JBrowse link
G Hmga2 high mobility group AT-hook 2 acts_upstream_of ISO (PMID:18640244) MGI PMID:18640244 NCBI chrNW_004955458:12,493,790...12,624,805 JBrowse link
G Id2 inhibitor of DNA binding 2 acts_upstream_of ISO (PMID:19109490) MGI PMID:19109490 NCBI chrNW_004955487:878,326...880,783
Ensembl chrNW_004955487:878,326...880,783
JBrowse link
G Id4 inhibitor of DNA binding 4, HLH protein acts_upstream_of ISO (PMID:15882580) MGI PMID:15882580 NCBI chrNW_004955483:6,598,804...6,601,496
Ensembl chrNW_004955483:6,600,867...6,602,564
JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO (PMID:16111892) MGI PMID:16111892 NCBI chrNW_004955405:41,891,430...42,225,066
Ensembl chrNW_004955405:41,931,058...42,139,608
JBrowse link
G Lif LIF interleukin 6 family cytokine ISO RGD PMID:17328769 RGD:2326156 NCBI chrNW_004955455:4,489,515...4,505,439
Ensembl chrNW_004955455:4,489,421...4,497,940
JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within ISO (PMID:27654426) MGI PMID:27654426 NCBI chrNW_004955428:13,519,285...13,548,007
Ensembl chrNW_004955428:13,519,277...13,544,695
JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor acts_upstream_of ISO (PMID:18640244) MGI PMID:18640244 NCBI chrNW_004955487:9,219,528...9,224,818
Ensembl chrNW_004955487:9,219,528...9,224,818
JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO (PMID:12111813) MGI PMID:12111813 NCBI chrNW_004955451:16,445,338...16,449,243
Ensembl chrNW_004955451:16,445,338...16,450,062
JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of ISO (PMID:11297510)
(PMID:10442636), (PMID:9878702)
MGI PMID:9878702 PMID:10442636 PMID:11297510 NCBI chrNW_004955481:6,145,855...6,404,179
Ensembl chrNW_004955481:6,145,855...6,404,179
JBrowse link
G Nfix nuclear factor I X acts_upstream_of_or_within
involved_in
ISO (PMID:21800304)
(PMID:29106906)
MGI PMID:21800304 PMID:29106906 NCBI chrNW_004955415:32,055,926...32,121,611
Ensembl chrNW_004955415:32,055,375...32,117,833
JBrowse link
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within ISO (PMID:19258013) MGI PMID:19258013 NCBI chrNW_004955415:29,263,741...29,268,259
Ensembl chrNW_004955415:29,258,434...29,268,259
JBrowse link
G Notch1 notch receptor 1 ISO RGD PMID:19378247 RGD:2325301 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259
JBrowse link
G Nr2e1 nuclear receptor subfamily 2 group E member 1 acts_upstream_of ISO (PMID:14702088) MGI PMID:14702088 NCBI chrNW_004955411:33,303,765...33,325,221
Ensembl chrNW_004955411:33,303,655...33,325,376
JBrowse link
G Nr3c1 nuclear receptor subfamily 3 group C member 1 involved_in ISO (PMID:29890290) MGI PMID:29890290 NCBI chrNW_004955415:10,494,704...10,585,778
Ensembl chrNW_004955415:10,494,640...10,586,221
JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within
ISO (PMID:30186101)
(PMID:19258013)
MGI
RGD
PMID:19258013 PMID:22944581 PMID:30186101 RGD:8552357 NCBI chrNW_004955476:10,058,979...10,074,668
Ensembl chrNW_004955476:10,058,961...10,074,162
JBrowse link
G S100b S100 calcium binding protein B ISO RGD PMID:19147496 RGD:5508832 NCBI chrNW_004955407:42,972,584...42,980,510
Ensembl chrNW_004955407:42,972,584...42,980,510
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of ISO (PMID:10357934) MGI PMID:10357934 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Sox6 SRY-box transcription factor 6 ISO RGD PMID:15846364 RGD:1581115 NCBI chrNW_004955414:30,965,626...31,532,473
Ensembl chrNW_004955414:30,971,920...31,335,263
JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO (PMID:15156153) UniProt PMID:15156153 NCBI chrNW_004955451:16,320,326...16,348,505
Ensembl chrNW_004955451:16,319,904...16,357,687
JBrowse link
G Vax1 ventral anterior homeobox 1 acts_upstream_of_or_within ISO (PMID:15590934) MGI PMID:15590934 NCBI chrNW_004955431:21,853,636...21,857,547
Ensembl chrNW_004955431:21,853,636...21,857,547
JBrowse link
G Vps54 VPS54 subunit of GARP complex involved_in ISO (PMID:29890290) MGI PMID:29890290 NCBI chrNW_004955424:20,329,009...20,443,652
Ensembl chrNW_004955424:20,327,754...20,445,980
JBrowse link
astrocyte fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcm1 glial cells missing transcription factor 1 acts_upstream_of_or_within ISO (PMID:14573516) MGI PMID:14573516 NCBI chrNW_004955411:2,872,758...2,917,154
Ensembl chrNW_004955411:2,898,693...2,917,168
JBrowse link
G Sox8 SRY-box transcription factor 8 acts_upstream_of_or_within ISO (PMID:19490914) MGI PMID:19490914 NCBI chrNW_004955442:16,236,286...16,241,093
Ensembl chrNW_004955442:16,236,232...16,241,152
JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:19490914) MGI PMID:19490914 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563
JBrowse link
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor acts_upstream_of_or_within ISO (PMID:16292311) MGI PMID:16292311 NCBI chrNW_004955464:11,304,611...11,317,420
Ensembl chrNW_004955464:11,310,628...11,315,924
JBrowse link
asymmetric neuroblast division term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef2 Rho/Rac guanine nucleotide exchange factor 2 involved_in ISO (PMID:28453519) UniProt PMID:28453519 NCBI chrNW_004955545:2,149,107...2,192,986
Ensembl chrNW_004955545:2,149,107...2,197,153
JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISO (PMID:23946438) UniProt PMID:23946438 NCBI chrNW_004955413:18,831,931...19,676,371
Ensembl chrNW_004955413:18,831,931...19,204,217
JBrowse link
G Tead3 TEA domain transcription factor 3 involved_in ISO (PMID:23946438) UniProt PMID:23946438 NCBI chrNW_004955437:3,387,812...3,405,232
Ensembl chrNW_004955437:3,387,228...3,405,069
JBrowse link
auditory receptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clrn1 clarin 1 acts_upstream_of_or_within ISO (PMID:19414487) MGI PMID:19414487 NCBI chrNW_004955448:2,062,647...2,106,548
Ensembl chrNW_004955448:2,062,647...2,106,548
JBrowse link
G Elmod3 ELMO domain containing 3 acts_upstream_of_or_within ISO (PMID:31628468) MGI PMID:31628468 NCBI chrNW_004955424:2,082,480...2,107,599
Ensembl chrNW_004955424:2,083,085...2,106,664
JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (PMID:15630379) MGI PMID:15630379 NCBI chrNW_004955463:14,013,247...14,064,354
Ensembl chrNW_004955463:14,013,247...14,064,111
JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in ISO (PMID:26084842) MGI PMID:26084842 NCBI chrNW_004955422:14,212,563...14,544,556
Ensembl chrNW_004955422:14,212,553...14,544,556
JBrowse link
G Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 involved_in ISO (PMID:23533177) CACAO PMID:23533177 NCBI chrNW_004955481:608,897...686,454
Ensembl chrNW_004955481:608,897...686,452
JBrowse link
G Pdzd7 PDZ domain containing 7 acts_upstream_of_or_within ISO (PMID:24334608) MGI PMID:24334608 NCBI chrNW_004955485:9,166,721...9,183,129
Ensembl chrNW_004955485:9,166,745...9,182,427
JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (PMID:12808454) MGI PMID:12808454 NCBI chrNW_004955430:18,991,615...19,059,590
Ensembl chrNW_004955430:18,991,301...19,067,754
JBrowse link
G Tmc1 transmembrane channel like 1 acts_upstream_of_or_within ISO (PMID:22105175) MGI PMID:22105175 NCBI chrNW_004955434:398,734...500,378
Ensembl chrNW_004955434:398,829...529,810
JBrowse link
auditory receptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jag2 jagged canonical Notch ligand 2 involved_in ISO (PMID:10080181) UniProt PMID:10080181 NCBI chrNW_004955538:3,421,685...3,433,829
Ensembl chrNW_004955538:3,421,685...3,433,842
JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:19154718) MGI PMID:19154718 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO (PMID:19154718) MGI PMID:19154718 NCBI chrNW_004955443:18,783,061...19,029,441
Ensembl chrNW_004955443:18,783,061...18,910,228
JBrowse link
auditory receptor cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:16407553) MGI PMID:16407553 NCBI chrNW_004955405:4,461,704...4,462,756
Ensembl chrNW_004955405:4,461,704...4,462,756
JBrowse link
auditory receptor cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:10364557) MGI PMID:10364557 NCBI chrNW_004955405:4,461,704...4,462,756
Ensembl chrNW_004955405:4,461,704...4,462,756
JBrowse link
auditory receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:20016102) MGI PMID:20016102 NCBI chrNW_004955460:13,270,159...13,295,562
Ensembl chrNW_004955460:13,270,159...13,311,351
JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO (PMID:20215345) MGI PMID:20215345 NCBI chrNW_004955454:2,461,526...2,482,734
Ensembl chrNW_004955454:2,461,760...2,482,098
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO (PMID:20215345) MGI PMID:20215345 NCBI chrNW_004955496:666,728...732,829
Ensembl chrNW_004955496:666,404...717,862
JBrowse link
G Slitrk6 SLIT and NTRK like family member 6 acts_upstream_of_or_within ISO (PMID:19936227) MGI PMID:19936227 NCBI chrNW_004955404:22,738,080...22,744,601
Ensembl chrNW_004955404:22,737,974...22,745,046
JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector acts_upstream_of_or_within ISO (PMID:24302887) MGI PMID:24302887 NCBI chrNW_004955424:20,723,592...21,114,801 JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd24 ankyrin repeat domain 24 involved_in ISO (PMID:35175278) UniProt PMID:35175278 NCBI chrNW_004955495:4,621,059...4,636,235 JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (PMID:11875276) MGI PMID:11875276 NCBI chrNW_004955561:1,727,935...1,851,907
Ensembl chrNW_004955561:1,727,935...1,851,907
JBrowse link
G Cdh23 cadherin related 23 acts_upstream_of_or_within ISO (PMID:7610888), (PMID:8790740), (PMID:9039475)
(PMID:11322776)
(PMID:11138008), (PMID:17050716), (PMID:23217710)
(PMID:12121736)
(PMID:15537665)
MGI PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 More... NCBI chrNW_004955437:19,683,792...20,044,718
Ensembl chrNW_004955437:19,684,473...20,003,819
JBrowse link
G Clic5 chloride intracellular channel 5 acts_upstream_of_or_within ISO (PMID:17021174) MGI PMID:17021174 NCBI chrNW_004955437:11,053,885...11,118,150
Ensembl chrNW_004955437:11,053,885...11,118,255
JBrowse link
G Clrn1 clarin 1 acts_upstream_of_or_within ISO (PMID:19414487), (PMID:19423712) MGI PMID:19414487 PMID:19423712 NCBI chrNW_004955448:2,062,647...2,106,548
Ensembl chrNW_004955448:2,062,647...2,106,548
JBrowse link
G Clrn2 clarin 2 involved_in ISO (PMID:33496845) UniProt PMID:33496845 NCBI chrNW_004955480:6,634,653...6,645,499
Ensembl chrNW_004955480:6,631,962...6,645,499
JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 acts_upstream_of_or_within ISO (PMID:30380417) MGI PMID:30380417 NCBI chrNW_004955415:8,203,968...8,220,148
Ensembl chrNW_004955415:8,203,968...8,220,148
JBrowse link
G Lhfpl5 LHFPL tetraspan subfamily member 5 acts_upstream_of_or_within ISO (PMID:17876667), (PMID:23217710)
(PMID:15905332)
MGI PMID:15905332 PMID:17876667 PMID:23217710 NCBI chrNW_004955437:3,644,448...3,650,688 JBrowse link
G Myo3a myosin IIIA involved_in ISO (PMID:26754646) MGI PMID:26754646 NCBI chrNW_004955429:3,172,457...3,358,688
Ensembl chrNW_004955429:3,172,996...3,358,688
JBrowse link
G Myo3b myosin IIIB involved_in ISO (PMID:26754646) MGI PMID:26754646 NCBI chrNW_004955449:4,128,816...4,546,651
Ensembl chrNW_004955449:4,129,823...4,546,296
JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO (PMID:12121736)
(PMID:17050716)
(PMID:11753415)
MGI PMID:11753415 PMID:12121736 PMID:17050716 NCBI chrNW_004955414:14,576,356...14,647,500
Ensembl chrNW_004955414:14,576,356...14,647,500
JBrowse link
G Nherf1 NHERF family PDZ scaffold protein 1 acts_upstream_of_or_within ISO (PMID:24920589) MGI PMID:24920589 NCBI chrNW_004955553:1,639,267...1,656,850
Ensembl chrNW_004955553:1,639,267...1,656,850
JBrowse link
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within ISO (PMID:16887306)
(PMID:11124469)
(PMID:15537665)
(PMID:23217710)
(PMID:10978835)
MGI PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710 NCBI chrNW_004955425:8,443,523...9,203,177
Ensembl chrNW_004955425:8,428,680...8,899,028
JBrowse link
G Pdzd7 PDZ domain containing 7 acts_upstream_of_or_within ISO (PMID:24334608) MGI PMID:24334608 NCBI chrNW_004955485:9,166,721...9,183,129
Ensembl chrNW_004955485:9,166,745...9,182,427
JBrowse link
G Pls1 plastin 1 involved_in ISO (PMID:25124451) UniProt PMID:25124451 NCBI chrNW_004955508:3,215,304...3,324,240
Ensembl chrNW_004955508:3,213,646...3,260,554
JBrowse link
G Ripor2 RHO family interacting cell polarization regulator 2 involved_in ISO (PMID:27269051) UniProt PMID:27269051 NCBI chrNW_004955483:2,048,236...2,257,078
Ensembl chrNW_004955483:2,048,324...2,256,589
JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO (PMID:20215345) MGI PMID:20215345 NCBI chrNW_004955454:2,461,526...2,482,734
Ensembl chrNW_004955454:2,461,760...2,482,098
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO (PMID:20215345) MGI PMID:20215345 NCBI chrNW_004955496:666,728...732,829
Ensembl chrNW_004955496:666,404...717,862
JBrowse link
G Sod1 superoxide dismutase 1 acts_upstream_of_or_within ISO (PMID:10464373), (PMID:10466888) MGI PMID:10464373 PMID:10466888 NCBI chrNW_004955407:31,261,451...31,267,657
Ensembl chrNW_004955407:31,263,863...31,267,727
JBrowse link
G Strc stereocilin involved_in
acts_upstream_of_or_within
ISO (PMID:21165971)
(PMID:30801007)
(PMID:18849963)
UniProt
MGI
PMID:18849963 PMID:21165971 PMID:30801007 NCBI chrNW_004955416:10,139,420...10,141,906 JBrowse link
G Tecta tectorin alpha acts_upstream_of_or_within ISO (PMID:30801007) MGI PMID:30801007 NCBI chrNW_004955412:22,062,618...22,132,037
Ensembl chrNW_004955412:22,062,618...22,131,442
JBrowse link
G Tprn taperin acts_upstream_of_or_within ISO (PMID:30380417) MGI PMID:30380417 NCBI chrNW_004955513:5,196,871...5,205,945
Ensembl chrNW_004955513:5,197,280...5,203,445
JBrowse link
G Whrn whirlin acts_upstream_of_or_within ISO (PMID:27117407) MGI PMID:27117407 NCBI chrNW_004955419:13,116,001...13,207,266
Ensembl chrNW_004955419:13,116,001...13,207,266
JBrowse link
axon arborization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssna1 SS nuclear autoantigen 1 involved_in ISO (PMID:25390646) UniProt PMID:25390646 NCBI chrNW_004955513:5,194,308...5,195,721
Ensembl chrNW_004955513:5,194,308...5,195,721
JBrowse link
axon choice point recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Efnb3 ephrin B3 acts_upstream_of_or_within ISO (PMID:11182083) MGI PMID:11182083 NCBI chrNW_004955467:9,217,796...9,225,223
Ensembl chrNW_004955467:9,217,796...9,224,940
JBrowse link
G Gap43 growth associated protein 43 acts_upstream_of_or_within ISO (PMID:7859286) MGI PMID:7859286 NCBI chrNW_004955427:15,696,549...15,791,279
Ensembl chrNW_004955427:15,695,963...15,791,327
JBrowse link
axon development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ank3 ankyrin 3 ISO RGD PMID:27098687 RGD:11535813 NCBI chrNW_004955425:13,522,233...13,851,286 JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within ISO (PMID:30930081) MGI PMID:30930081 NCBI chrNW_004955460:10,997,554...11,009,435
Ensembl chrNW_004955460:10,996,796...11,009,525
JBrowse link
G Bex2 brain expressed X-linked 2 acts_upstream_of_or_within ISO (PMID:20731761) MGI PMID:20731761 NCBI chrNW_004955548:439,061...505,418 JBrowse link
G Borcs7 BLOC-1 related complex subunit 7 acts_upstream_of_or_within ISO (PMID:30067980) MGI PMID:30067980 NCBI chrNW_004955485:7,605,277...7,615,924
Ensembl chrNW_004955485:7,605,277...7,615,924
JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C ISO RGD PMID:22473424 RGD:10411906 NCBI chrNW_004955454:4,573,647...5,199,046
Ensembl chrNW_004955454:4,490,923...5,198,506
JBrowse link
G Camsap2 calmodulin regulated spectrin associated protein family member 2 involved_in ISO (PMID:24908486) UniProt PMID:24908486 RGD:13441206 NCBI chrNW_004955406:36,958,337...37,055,748
Ensembl chrNW_004955406:36,957,523...37,055,748
JBrowse link
G Dcc DCC netrin 1 receptor ISO RGD PMID:22473424 RGD:10411906 NCBI chrNW_004955402:37,123,112...38,218,876
Ensembl chrNW_004955402:37,123,795...38,218,472
JBrowse link
G Ddr1 discoidin domain receptor tyrosine kinase 1 acts_upstream_of_or_within ISO (PMID:10970885) MGI PMID:10970885 NCBI chrNW_004955583:820,893...838,515
Ensembl chrNW_004955583:820,931...841,654
JBrowse link
G Dynlt1 dynein light chain Tctex-type 1 ISO RGD PMID:15992542 RGD:8553295 NCBI chrNW_004955439:3,833,525...3,842,393
Ensembl chrNW_004955439:3,833,525...3,842,393
JBrowse link
G Epb41l3 erythrocyte membrane protein band 4.1 like 3 involved_in ISO (PMID:21632923) MGI PMID:21632923 NCBI chrNW_004955402:5,459,586...5,674,745
Ensembl chrNW_004955402:5,590,724...5,675,340
JBrowse link
G Grm7 glutamate metabotropic receptor 7 involved_in ISO (PMID:33500274) UniProt PMID:33500274 NCBI chrNW_004955421:5,723,662...6,542,557
Ensembl chrNW_004955421:5,724,797...6,542,475
JBrowse link
G Kcna1 potassium voltage-gated channel subfamily A member 1 ISO RGD PMID:22473424 RGD:10411906 NCBI chrNW_004955413:2,703,030...2,711,612
Ensembl chrNW_004955413:2,703,030...2,711,612
JBrowse link
G Kcnc4 potassium voltage-gated channel subfamily C member 4 ISO RGD PMID:22473424 RGD:10411906 NCBI chrNW_004955435:13,728,272...13,750,420
Ensembl chrNW_004955435:13,728,708...13,750,660
JBrowse link
G L1cam L1 cell adhesion molecule involved_in ISO (PMID:20621658) UniProt PMID:20621658 NCBI chrNW_004955580:548,442...561,580
Ensembl chrNW_004955580:549,368...561,486
JBrowse link
G Map7d2 MAP7 domain containing 2 involved_in ISO PMID:30784582 UniProt PMID:30784582 RGD:596936201 NCBI chrNW_004955509:447,053...568,590
Ensembl chrNW_004955509:450,486...494,290
JBrowse link
G Mapk8ip3 mitogen-activated protein kinase 8 interacting protein 3 involved_in ISO PMID:23576431
(PMID:23576431), (PMID:25944905)
UniProt PMID:23576431 PMID:25944905 RGD:13673742 RGD:13673780 NCBI chrNW_004955442:15,498,909...15,545,298
Ensembl chrNW_004955442:15,498,909...15,545,298
JBrowse link
G Mark2 microtubule affinity regulating kinase 2 involved_in ISO PMID:16717194 ARUK-UCL PMID:16717194 RGD:13602002 NCBI chrNW_004955422:21,112,162...21,176,506
Ensembl chrNW_004955422:21,109,940...21,176,500
JBrowse link
G Mgarp mitochondria localized glutamic acid rich protein involved_in ISO (PMID:24323429) UniProt PMID:24323429 NCBI chrNW_004955428:4,365,585...4,373,902 JBrowse link
G Nefh neurofilament heavy chain involved_in ISO (PMID:7536898)
(PMID:9763431)
BHF-UCL PMID:7536898 PMID:9763431 NCBI chrNW_004955455:3,735,330...3,744,714
Ensembl chrNW_004955455:3,735,410...3,744,107
JBrowse link
G Plp1 proteolipid protein 1 acts_upstream_of_or_within ISO (PMID:24038504) MGI PMID:24038504 NCBI chrNW_004955548:781,522...797,246
Ensembl chrNW_004955548:781,015...797,935
JBrowse link
G Pmp22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (PMID:20071523) MGI PMID:20071523 NCBI chrNW_004955467:2,422,181...2,456,925
Ensembl chrNW_004955467:2,423,659...2,457,307
JBrowse link
G Scn2a sodium voltage-gated channel alpha subunit 2 ISO RGD PMID:22473424 RGD:10411906 NCBI chrNW_004955449:8,722,043...8,846,165
Ensembl chrNW_004955449:8,721,784...8,846,200
JBrowse link
G Svbp small vasohibin binding protein involved_in ISO (PMID:31324789) UniProt PMID:31324789 NCBI chrNW_004955537:2,333,657...2,337,012
Ensembl chrNW_004955537:2,333,657...2,337,037
JBrowse link
G Tbc1d24 TBC1 domain family member 24 acts_upstream_of_or_within ISO (PMID:30335140) MGI PMID:30335140 NCBI chrNW_004955442:14,816,213...14,823,132
Ensembl chrNW_004955442:14,812,566...14,823,224
JBrowse link
G Trim32 tripartite motif containing 32 acts_upstream_of_or_within ISO (PMID:19155210) MGI PMID:19155210 NCBI chrNW_004955419:11,151,751...11,168,046
Ensembl chrNW_004955419:11,151,751...11,168,041
JBrowse link
G Tspan2 tetraspanin 2 acts_upstream_of_or_within ISO (PMID:24038504) MGI PMID:24038504 NCBI chrNW_004955435:18,344,320...18,371,248
Ensembl chrNW_004955435:18,344,320...18,372,534
JBrowse link
G Vash2 vasohibin 2 involved_in ISO (PMID:31324789) UniProt PMID:31324789 NCBI chrNW_004955406:4,607,924...4,639,949
Ensembl chrNW_004955406:4,607,924...4,640,002
JBrowse link
G Zpr1 ZPR1 zinc finger involved_in ISO (PMID:15767679), (PMID:16648254), (PMID:22422766)
(PMID:22422766)
UniProt PMID:15767679 PMID:16648254 PMID:22422766 NCBI chrNW_004955412:18,117,957...18,127,552
Ensembl chrNW_004955412:18,116,531...18,127,552
JBrowse link
axon extension term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Auts2 activator of transcription and developmental regulator AUTS2 involved_in ISO (PMID:25533347) UniProt PMID:25533347 NCBI chrNW_004955456:10,294,525...11,417,761
Ensembl chrNW_004955456:10,296,377...10,322,455
JBrowse link
G Bdnf brain derived neurotrophic factor acts_upstream_of_or_within ISO (PMID:24035762) MGI PMID:24035762 NCBI chrNW_004955476:6,773,244...6,822,201
Ensembl chrNW_004955476:6,772,088...6,822,588
JBrowse link
G C9orf72 C9orf72-SMCR8 complex subunit involved_in ISO (PMID:27723745) UniProt PMID:27723745 NCBI chrNW_004955472:7,299,092...7,337,591
Ensembl chrNW_004955472:7,310,788...7,337,735
JBrowse link
G Cdh4 cadherin 4 acts_upstream_of ISO (PMID:14586016) MGI PMID:14586016 NCBI chrNW_004955528:2,040,373...2,594,602
Ensembl chrNW_004955528:2,043,648...2,220,640
JBrowse link
G Dclk1 doublecortin like kinase 1 acts_upstream_of_or_within ISO (PMID:16387638) MGI PMID:16387638 NCBI chrNW_004955431:9,975,629...10,302,605
Ensembl chrNW_004955431:9,975,262...10,297,010
JBrowse link
G Dcx doublecortin acts_upstream_of_or_within ISO (PMID:16387638) MGI PMID:16387638 NCBI chrNW_004955490:4,354,307...4,469,055
Ensembl chrNW_004955490:4,354,307...4,469,055
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO (PMID:18716223) MGI PMID:18716223 NCBI chrNW_004955486:9,464,390...9,469,984
Ensembl chrNW_004955486:9,464,313...9,469,984
JBrowse link
G Edn1 endothelin 1 involved_in ISO (PMID:18401410) MGI PMID:18401410 NCBI chrNW_004955465:2,287,906...2,314,945
Ensembl chrNW_004955465:2,287,798...2,314,753
JBrowse link
G Edn2 endothelin 2 involved_in ISO (PMID:18401410) MGI PMID:18401410 NCBI chrNW_004955537:1,228,062...1,233,784
Ensembl chrNW_004955537:1,228,070...1,233,797
JBrowse link
G Edn3 endothelin 3 involved_in ISO (PMID:18401410) MGI PMID:18401410 NCBI chrNW_004955445:215,910...238,153
Ensembl chrNW_004955445:215,859...237,760
JBrowse link
G Ednra endothelin receptor type A involved_in ISO (PMID:18401410) MGI PMID:18401410 NCBI chrNW_004955428:3,062,303...3,114,761
Ensembl chrNW_004955428:3,062,303...3,114,761
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta acts_upstream_of ISO (PMID:24623780) MGI PMID:24623780 NCBI chrNW_004955427:19,489,972...19,671,137
Ensembl chrNW_004955427:19,495,422...19,671,137
JBrowse link
G Itgb1 integrin subunit beta 1 acts_upstream_of_or_within ISO (PMID:12879062) MGI PMID:12879062 NCBI chrNW_004955462:4,454,809...4,483,227
Ensembl chrNW_004955462:4,454,809...4,484,842
JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within ISO (PMID:21857657) MGI PMID:21857657 NCBI chrNW_004955419:3,999,364...4,019,543
Ensembl chrNW_004955419:3,998,242...4,018,875
JBrowse link
G Limk1 LIM domain kinase 1 acts_upstream_of ISO (PMID:16204183) MGI PMID:16204183 NCBI chrNW_004955456:13,751,135...13,773,722
Ensembl chrNW_004955456:13,750,889...13,774,021
JBrowse link
G Map1b microtubule associated protein 1B acts_upstream_of_or_within ISO (PMID:16536727) MGI PMID:16536727 NCBI chrNW_004955575:914,607...1,020,971
Ensembl chrNW_004955575:913,723...1,021,028
JBrowse link
G Mapt microtubule associated protein tau acts_upstream_of_or_within ISO (PMID:11891784)
(PMID:16536727), (PMID:20338169)
MGI PMID:11891784 PMID:16536727 PMID:20338169 NCBI chrNW_004955478:10,222,439...10,271,439
Ensembl chrNW_004955478:10,225,823...10,271,442
JBrowse link
G Ndn necdin, MAGE family member acts_upstream_of_or_within ISO (PMID:15972963) MGI PMID:15972963 NCBI chrNW_004955416:31,125,354...31,127,010
Ensembl chrNW_004955416:31,125,924...31,126,889
JBrowse link
G Ngf nerve growth factor acts_upstream_of ISO (PMID:8861722) MGI PMID:8861722 NCBI chrNW_004955435:18,581,889...18,633,330
Ensembl chrNW_004955435:18,581,808...18,601,059
JBrowse link
G Nlgn3 neuroligin 3 involved_in ISO PMID:19406211 BHF-UCL PMID:19406211 RGD:8554851 NCBI chrNW_004955475:10,712,170...10,735,857
Ensembl chrNW_004955475:10,712,170...10,735,857
JBrowse link
G Nrp1 neuropilin 1 acts_upstream_of ISO (PMID:12852851) MGI PMID:12852851 NCBI chrNW_004955462:4,101,997...4,241,012
Ensembl chrNW_004955462:4,101,999...4,241,012
JBrowse link
G Pou4f2 POU class 4 homeobox 2 acts_upstream_of_or_within ISO (PMID:11807038) MGI PMID:11807038 NCBI chrNW_004955428:2,325,775...2,329,122
Ensembl chrNW_004955428:2,324,834...2,329,205
JBrowse link
G Pou4f3 POU class 4 homeobox 3 acts_upstream_of_or_within ISO (PMID:11807038) MGI PMID:11807038 NCBI chrNW_004955415:7,777,296...7,778,622
Ensembl chrNW_004955415:7,777,114...7,778,622
JBrowse link
G Raph1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 acts_upstream_of_or_within ISO (PMID:20417104) MGI PMID:20417104 NCBI chrNW_004955457:11,394,572...11,462,617 JBrowse link
G Rnf6 ring finger protein 6 acts_upstream_of ISO (PMID:16204183) MGI PMID:16204183 NCBI chrNW_004955497:5,744,485...5,754,728
Ensembl chrNW_004955497:5,744,157...5,754,728
JBrowse link
G Sema3a semaphorin 3A acts_upstream_of ISO (PMID:12852851) MGI PMID:12852851 NCBI chrNW_004955410:2,146,088...2,344,342
Ensembl chrNW_004955410:2,144,388...2,338,973
JBrowse link
G Sema5a semaphorin 5A acts_upstream_of_or_within ISO (PMID:21835343) MGI PMID:21835343 NCBI chrNW_004955504:6,343,747...6,691,945
Ensembl chrNW_004955504:6,350,866...6,762,104
JBrowse link
G Sema5b semaphorin 5B acts_upstream_of_or_within ISO (PMID:21835343) MGI PMID:21835343 NCBI chrNW_004955427:22,109,946...22,219,497
Ensembl chrNW_004955427:22,109,607...22,180,602
JBrowse link
G Sema7a semaphorin 7A (JohnMiltonHagen blood group) acts_upstream_of_or_within ISO (PMID:12879062) MGI PMID:12879062 NCBI chrNW_004955450:3,401,732...3,424,547
Ensembl chrNW_004955450:3,401,777...3,423,363
JBrowse link
G Slc9a6 solute carrier family 9 member A6 acts_upstream_of_or_within ISO (PMID:24035762) MGI PMID:24035762 NCBI chrNW_004955489:9,020,719...9,078,375
Ensembl chrNW_004955489:9,019,425...9,078,705
JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:24794856) MGI PMID:24794856 NCBI chrNW_004955416:11,084,448...11,168,478
Ensembl chrNW_004955416:11,086,176...11,168,332
JBrowse link
G Srf serum response factor acts_upstream_of ISO (PMID:24623780) MGI PMID:24623780 NCBI chrNW_004955437:9,100,546...9,109,305
Ensembl chrNW_004955437:9,098,968...9,107,057
JBrowse link
G Ssna1 SS nuclear autoantigen 1 involved_in ISO (PMID:30250060)
(PMID:25390646)
UniProt PMID:25390646 PMID:30250060 NCBI chrNW_004955513:5,194,308...5,195,721
Ensembl chrNW_004955513:5,194,308...5,195,721
JBrowse link
G Tnr tenascin R acts_upstream_of ISO (PMID:16831557) MGI PMID:16831557 NCBI chrNW_004955406:15,007,248...15,512,219
Ensembl chrNW_004955406:15,088,843...15,282,937
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 acts_upstream_of_or_within ISO (PMID:17389358) MGI PMID:17389358 NCBI chrNW_004955482:760,200...777,133
Ensembl chrNW_004955482:761,811...777,133
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 acts_upstream_of_or_within ISO (PMID:17389358) MGI PMID:17389358 NCBI chrNW_004955467:818,975...894,103
Ensembl chrNW_004955467:818,076...894,106
JBrowse link
G Usp9x ubiquitin specific peptidase 9 X-linked involved_in
acts_upstream_of_or_within
ISO (PMID:24607389)
(PMID:23861879)
UniProt
MGI
PMID:23861879 PMID:24607389 NCBI chrNW_004955565:1,479,040...1,602,070
Ensembl chrNW_004955565:1,479,040...1,602,070
JBrowse link
G Vcl vinculin acts_upstream_of_or_within ISO (PMID:24623780) MGI PMID:24623780 NCBI chrNW_004955437:17,812,998...17,920,253
Ensembl chrNW_004955437:17,813,007...17,920,253
JBrowse link
axon extension involved in axon guidance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 acts_upstream_of
involved_in
ISO (PMID:9753685)
(PMID:22790009)
MGI
BHF-UCL
PMID:9753685 PMID:22790009 NCBI chrNW_004955462:4,101,997...4,241,012
Ensembl chrNW_004955462:4,101,999...4,241,012
JBrowse link
G Nrp2 neuropilin 2 involved_in ISO (PMID:22790009) BHF-UCL PMID:22790009 NCBI chrNW_004955457:9,197,621...9,316,789
Ensembl chrNW_004955457:9,197,405...9,316,787
JBrowse link
G Plxna3 plexin A3 acts_upstream_of ISO (PMID:11683995) MGI PMID:11683995 NCBI chrNW_004955580:958,033...972,123
Ensembl chrNW_004955580:957,860...972,772
JBrowse link
G Ryk receptor like tyrosine kinase acts_upstream_of ISO (PMID:16723543) MGI PMID:16723543 NCBI chrNW_004955501:4,360,051...4,419,083
Ensembl chrNW_004955501:4,328,682...4,419,307
JBrowse link
G Sema3a semaphorin 3A acts_upstream_of
involved_in
ISO (PMID:11683995)
(PMID:18550718)
(PMID:7748561), (PMID:9753685)
(PMID:22790009)
MGI
BHF-UCL
PMID:7748561 PMID:9753685 PMID:11683995 PMID:18550718 PMID:22790009 NCBI chrNW_004955410:2,146,088...2,344,342
Ensembl chrNW_004955410:2,144,388...2,338,973
JBrowse link
G Sema3f semaphorin 3F involved_in
acts_upstream_of
ISO (PMID:22790009)
(PMID:11683995)
(PMID:9753685)
BHF-UCL
MGI
PMID:9753685 PMID:11683995 PMID:22790009 NCBI chrNW_004955532:1,992,417...2,015,879
Ensembl chrNW_004955532:1,988,486...2,017,170
JBrowse link
G Slit1 slit guidance ligand 1 involved_in ISO (PMID:16840550) UniProt PMID:16840550 NCBI chrNW_004955507:3,204,135...3,365,319
Ensembl chrNW_004955507:3,201,556...3,365,471
JBrowse link
G Slit2 slit guidance ligand 2 involved_in ISO (PMID:16840550) UniProt PMID:16840550 NCBI chrNW_004955480:3,982,977...4,314,160
Ensembl chrNW_004955480:3,984,586...4,313,908
JBrowse link
G Slit3 slit guidance ligand 3 involved_in ISO (PMID:16840550) UniProt PMID:16840550 NCBI chrNW_004955408:21,719,487...22,322,958
Ensembl chrNW_004955408:21,722,632...22,322,917
JBrowse link
G Smo smoothened, frizzled class receptor ISO RGD PMID:19447091 RGD:2324988 NCBI chrNW_004955479:9,963,377...9,991,670
Ensembl chrNW_004955479:9,964,170...9,993,165
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of ISO (PMID:16723543) MGI PMID:16723543 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
axon extension involved in regeneration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb2 laminin subunit beta 2 acts_upstream_of_or_within ISO (PMID:9396756) MGI PMID:9396756 NCBI chrNW_004955532:1,115,412...1,127,264
Ensembl chrNW_004955532:1,115,087...1,127,455
JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 acts_upstream_of ISO (PMID:16142215) MGI PMID:16142215 NCBI chrNW_004955416:16,652,931...17,018,188
Ensembl chrNW_004955416:16,652,791...17,018,188
JBrowse link
G Tnr tenascin R acts_upstream_of ISO (PMID:16870730) MGI PMID:16870730 NCBI chrNW_004955406:15,007,248...15,512,219
Ensembl chrNW_004955406:15,088,843...15,282,937
JBrowse link
axon guidance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ablim1 actin binding LIM protein 1 acts_upstream_of_or_within ISO (PMID:11163266) MGI PMID:11163266 NCBI chrNW_004955431:19,397,136...19,684,574
Ensembl chrNW_004955431:19,402,023...19,683,589
JBrowse link
G Alcam activated leukocyte cell adhesion molecule acts_upstream_of_or_within ISO (PMID:15345243) MGI PMID:15345243 NCBI chrNW_004955427:6,494,657...6,544,668
Ensembl chrNW_004955427:6,494,124...6,545,963
JBrowse link
G Ank3 ankyrin 3 acts_upstream_of_or_within ISO (PMID:15479642) MGI PMID:15479642 NCBI chrNW_004955425:13,522,233...13,851,286 JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 acts_upstream_of_or_within ISO (PMID:16407979) MGI PMID:16407979 NCBI chrNW_004955414:22,121,867...22,137,849
Ensembl chrNW_004955414:22,117,470...22,137,849
JBrowse link
G Apbb2 amyloid beta precursor protein binding family B member 2 acts_upstream_of_or_within ISO (PMID:16407979) MGI PMID:16407979 NCBI chrNW_004955443:6,513,762...6,786,247
Ensembl chrNW_004955443:6,513,980...6,783,014
JBrowse link
G Arhgap35 Rho GTPase activating protein 35 involved_in ISO (PMID:11283609) UniProt PMID:11283609 NCBI chrNW_004955574:915,604...984,744
Ensembl chrNW_004955574:915,325...984,744
JBrowse link
G Artn artemin acts_upstream_of_or_within ISO (PMID:12160745) MGI PMID:12160745 NCBI chrNW_004955537:3,460,176...3,464,335
Ensembl chrNW_004955537:3,460,176...3,464,335
JBrowse link
G Arx aristaless related homeobox acts_upstream_of_or_within ISO (PMID:15677725)
(PMID:17460091)
MGI PMID:15677725 PMID:17460091 NCBI chrNW_004955509:5,326,145...5,338,250 JBrowse link
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:16145671) MGI PMID:16145671 NCBI chrNW_004955405:4,461,704...4,462,756
Ensembl chrNW_004955405:4,461,704...4,462,756
JBrowse link
G B3gnt2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 acts_upstream_of_or_within ISO (PMID:15728829), (PMID:23006775) MGI PMID:15728829 PMID:23006775 NCBI chrNW_004955424:21,859,901...21,888,722
Ensembl chrNW_004955424:21,859,901...21,888,722
JBrowse link
G B4gat1 beta-1,4-glucuronyltransferase 1 acts_upstream_of_or_within ISO (PMID:23217742) MGI PMID:23217742 NCBI chrNW_004955422:18,979,545...18,981,889
Ensembl chrNW_004955422:18,979,545...18,981,889
JBrowse link
G Bdnf brain derived neurotrophic factor acts_upstream_of_or_within ISO (PMID:15014133) MGI PMID:15014133 NCBI chrNW_004955476:6,773,244...6,822,201
Ensembl chrNW_004955476:6,772,088...6,822,588
JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (PMID:12741987) MGI PMID:12741987 NCBI chrNW_004955445:2,154,057...2,235,594
Ensembl chrNW_004955445:2,153,170...2,235,795
JBrowse link
G Boc BOC cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO (PMID:17086203) MGI PMID:17086203 NCBI chrNW_004955427:13,424,478...13,492,527
Ensembl chrNW_004955427:13,424,478...13,493,952
JBrowse link
G Cdh4 cadherin 4 acts_upstream_of_or_within ISO (PMID:14586016) MGI PMID:14586016 NCBI chrNW_004955528:2,040,373...2,594,602
Ensembl chrNW_004955528:2,043,648...2,220,640
JBrowse link
G Cdk5r1 cyclin dependent kinase 5 regulatory subunit 1 involved_in ISO (PMID:10545161) UniProt PMID:10545161 NCBI chrNW_004955481:7,408,089...7,411,813
Ensembl chrNW_004955481:7,408,205...7,409,128
JBrowse link
G Chl1 cell adhesion molecule L1 like acts_upstream_of_or_within ISO (PMID:12391163) MGI PMID:12391163 NCBI chrNW_004955421:12,763,432...12,957,852
Ensembl chrNW_004955421:12,763,287...12,958,065
JBrowse link
G Cntn2 contactin 2 acts_upstream_of_or_within ISO (PMID:18550718) MGI PMID:18550718 NCBI chrNW_004955406:40,831,897...40,862,445
Ensembl chrNW_004955406:40,831,850...40,858,569
JBrowse link
G Crppa CDP-L-ribitol pyrophosphorylase A acts_upstream_of_or_within ISO (PMID:23217742) MGI PMID:23217742 NCBI chrNW_004955410:19,359,495...19,614,283
Ensembl chrNW_004955410:19,359,868...19,614,344
JBrowse link
G Csf1r colony stimulating factor 1 receptor involved_in ISO (PMID:22542597) ParkinsonsUK-UCL PMID:22542597 NCBI chrNW_004955415:4,434,486...4,462,505
Ensembl chrNW_004955415:4,434,453...4,461,751
JBrowse link
G Dcc DCC netrin 1 receptor ISO RGD PMID:8861902 RGD:729062 NCBI chrNW_004955402:37,123,112...38,218,876
Ensembl chrNW_004955402:37,123,795...38,218,472
JBrowse link
G Dlx5 distal-less homeobox 5 acts_upstream_of_or_within ISO (PMID:17804636) MGI PMID:17804636 NCBI chrNW_004955432:13,429,832...13,434,160
Ensembl chrNW_004955432:13,429,415...13,434,258
JBrowse link
G Draxin dorsal inhibitory axon guidance protein involved_in ISO (PMID:19150847) UniProt PMID:19150847 NCBI chrNW_004955486:2,161,927...2,185,230
Ensembl chrNW_004955486:2,161,913...2,174,013
JBrowse link
G Drgx dorsal root ganglia homeobox acts_upstream_of_or_within ISO (PMID:12917357) MGI PMID:12917357 NCBI chrNW_004955556:842,714...870,248
Ensembl chrNW_004955556:842,714...870,248
JBrowse link
G Dscam DS cell adhesion molecule involved_in ISO (PMID:22685302) UniProt PMID:22685302 NCBI chrNW_004955407:39,985,501...40,473,330
Ensembl chrNW_004955407:39,986,108...40,473,200
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO (PMID:18716223) MGI PMID:18716223 NCBI chrNW_004955486:9,464,390...9,469,984
Ensembl chrNW_004955486:9,464,313...9,469,984
JBrowse link
G Ece1 endothelin converting enzyme 1 involved_in ISO (PMID:30735130) MGI PMID:30735130 NCBI chrNW_004955452:1,653,783...1,704,619
Ensembl chrNW_004955452:1,651,316...1,751,489
JBrowse link
G Edn1 endothelin 1 involved_in ISO (PMID:30735130) MGI PMID:30735130 NCBI chrNW_004955465:2,287,906...2,314,945
Ensembl chrNW_004955465:2,287,798...2,314,753
JBrowse link
G Edn3 endothelin 3 involved_in ISO (PMID:18401410) MGI PMID:18401410 NCBI chrNW_004955445:215,910...238,153
Ensembl chrNW_004955445:215,859...237,760
JBrowse link
G Ednra endothelin receptor type A involved_in ISO (PMID:18401410)
(PMID:30735130)
MGI PMID:18401410 PMID:30735130 NCBI chrNW_004955428:3,062,303...3,114,761
Ensembl chrNW_004955428:3,062,303...3,114,761
JBrowse link
G Efna2 ephrin A2 ISO RGD PMID:17328773 RGD:2301727 NCBI chrNW_004955495:6,614,828...6,627,287
Ensembl chrNW_004955495:6,614,791...6,627,287
JBrowse link
G Efna5 ephrin A5 acts_upstream_of_or_within ISO (PMID:9614241)
(PMID:11222144)
MGI PMID:9614241 PMID:11222144 NCBI chrNW_004955418:6,919,270...7,188,561
Ensembl chrNW_004955418:6,920,919...7,185,478
JBrowse link
G Efnb1 ephrin B1 acts_upstream_of_or_within ISO (PMID:11731465) MGI PMID:11731465 NCBI chrNW_004955475:8,360,504...8,372,431
Ensembl chrNW_004955475:8,360,465...8,373,578
JBrowse link
G Efnb3 ephrin B3 acts_upstream_of_or_within ISO (PMID:12649481)
(PMID:11731465)
MGI PMID:11731465 PMID:12649481 NCBI chrNW_004955467:9,217,796...9,225,223
Ensembl chrNW_004955467:9,217,796...9,224,940
JBrowse link
G Enah ENAH actin regulator acts_upstream_of_or_within ISO (PMID:15371503)
(PMID:10069337), (PMID:15371503)
MGI PMID:10069337 PMID:15371503 NCBI chrNW_004955520:310,482...374,800
Ensembl chrNW_004955520:308,070...371,922
JBrowse link
G Epha4 EPH receptor A4 acts_upstream_of_or_within ISO (PMID:12649481)
(PMID:23144223)
MGI PMID:12649481 PMID:23144223 NCBI chrNW_004955453:12,099,800...12,240,199
Ensembl chrNW_004955453:12,099,757...12,240,199
JBrowse link
G Epha5 EPH receptor A5 involved_in ISO (PMID:12124402) UniProt PMID:12124402 NCBI chrNW_004955447:7,066,111...7,382,046
Ensembl chrNW_004955447:7,066,111...7,382,046
JBrowse link
G Epha8 EPH receptor A8 involved_in ISO (PMID:9214628) UniProt PMID:9214628 NCBI chrNW_004955452:2,702,277...2,729,161
Ensembl chrNW_004955452:2,701,803...2,729,277
JBrowse link
G Ephb1 EPH receptor B1 acts_upstream_of_or_within ISO (PMID:11532925)
(PMID:12971893)
(PMID:24997765)
(PMID:16701205)
MGI PMID:11532925 PMID:12971893 PMID:16701205 PMID:24997765 NCBI chrNW_004955501:3,424,112...3,821,727
Ensembl chrNW_004955501:3,423,977...3,821,890
JBrowse link
G Ephb2 EPH receptor B2 involved_in
acts_upstream_of_or_within
ISO (PMID:10839360), (PMID:8947026)
(PMID:11532925)
UniProt
MGI
PMID:8947026 PMID:10839360 PMID:11532925 NCBI chrNW_004955452:2,844,713...2,986,790
Ensembl chrNW_004955452:2,844,713...2,980,445
JBrowse link
G Ephb3 EPH receptor B3 acts_upstream_of_or_within
involved_in
ISO (PMID:11532925)
(PMID:10839360), (PMID:8947026)
MGI
UniProt
PMID:8947026 PMID:10839360 PMID:11532925 NCBI chrNW_004955420:22,900,588...22,919,924
Ensembl chrNW_004955420:22,901,337...22,920,712
JBrowse link
G Etv1 ETS variant transcription factor 1 acts_upstream_of_or_within ISO (PMID:10850491) MGI PMID:10850491 NCBI chrNW_004955410:17,445,496...17,535,856
Ensembl chrNW_004955410:17,445,496...17,535,856
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within_positive_effect ISO (PMID:14605369)
(PMID:21743013)
MGI PMID:14605369 PMID:21743013 NCBI chrNW_004955417:23,798,044...24,067,759
Ensembl chrNW_004955417:23,798,393...24,067,100
JBrowse link
G Fezf1 FEZ family zinc finger 1 acts_upstream_of_or_within ISO (PMID:16540508) MGI PMID:16540508 NCBI chrNW_004955479:3,945,358...3,953,924
Ensembl chrNW_004955479:3,945,292...3,951,847
JBrowse link
G Flrt2 fibronectin leucine rich transmembrane protein 2 acts_upstream_of_or_within ISO (PMID:21673655) MGI PMID:21673655 NCBI chrNW_004955438:8,565,319...8,656,195
Ensembl chrNW_004955438:8,565,319...8,656,186
JBrowse link
G Flrt3 fibronectin leucine rich transmembrane protein 3 acts_upstream_of_or_within
involved_in
ISO PMID:21673655
(PMID:24560577)
MGI
UniProt
PMID:21673655 PMID:24560577 RGD:8554719 NCBI chrNW_004955415:23,669,749...23,683,235
Ensembl chrNW_004955415:23,669,749...23,683,235
JBrowse link
G Foxd1 forkhead box D1 acts_upstream_of_or_within ISO (PMID:15509772) MGI PMID:15509772 NCBI chrNW_004955425:27,158,601...27,159,447 JBrowse link
G Gap43 growth associated protein 43 acts_upstream_of_or_within ISO (PMID:10662636) MGI PMID:10662636 NCBI chrNW_004955427:15,696,549...15,791,279
Ensembl chrNW_004955427:15,695,963...15,791,327
JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504941) MGI PMID:17504941 NCBI chrNW_004955432:727,784...729,096 JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO (PMID:11135239) MGI PMID:11135239 NCBI chrNW_004955421:24,448,446...24,477,885
Ensembl chrNW_004955421:24,457,496...24,478,744
JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO (PMID:11967891) MGI PMID:11967891 NCBI chrNW_004955453:538,066...541,415
Ensembl chrNW_004955453:538,280...540,306
JBrowse link
G Gdf7 growth differentiation factor 7 acts_upstream_of_or_within ISO (PMID:12639970) MGI PMID:12639970 NCBI chrNW_004955469:3,134,355...3,149,177 JBrowse link
G Gfra3 GDNF family receptor alpha 3 acts_upstream_of_or_within ISO (PMID:12160745)
(PMID:10482239)
MGI PMID:10482239 PMID:12160745 NCBI chrNW_004955418:2,152,887...2,162,883
Ensembl chrNW_004955418:2,143,169...2,163,286
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:10409510) MGI PMID:10409510 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:15065125)
(PMID:20943929)
MGI PMID:15065125 PMID:20943929 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918
JBrowse link
G Klf7 KLF transcription factor 7 acts_upstream_of_or_within ISO (PMID:15964824) MGI PMID:15964824 NCBI chrNW_004955457:7,833,711...7,918,754
Ensembl chrNW_004955457:7,833,218...7,918,754
JBrowse link
G L1cam L1 cell adhesion molecule involved_in
acts_upstream_of_or_within
ISO (PMID:24155914)
(PMID:18650339)
(PMID:18550718)
(PMID:12533613), (PMID:18550718)
UniProt
MGI
PMID:12533613 PMID:18550718 PMID:18650339 PMID:24155914 NCBI chrNW_004955580:548,442...561,580
Ensembl chrNW_004955580:549,368...561,486
JBrowse link
G Lama2 laminin subunit alpha 2 acts_upstream_of_or_within ISO (PMID:19295126) MGI PMID:19295126 NCBI chrNW_004955436:9,829,777...10,400,101
Ensembl chrNW_004955436:9,830,030...10,399,891
JBrowse link
G Lamb2 laminin subunit beta 2 acts_upstream_of_or_within ISO (PMID:19295126) MGI PMID:19295126 NCBI chrNW_004955532:1,115,412...1,127,264
Ensembl chrNW_004955532:1,115,087...1,127,455
JBrowse link
G Lgi1 leucine rich glioma inactivated 1 involved_in ISO (PMID:20463223) DFLAT PMID:20463223 NCBI chrNW_004955507:268,032...304,949
Ensembl chrNW_004955507:267,892...305,026
JBrowse link
G Lhx2 LIM homeobox 2 involved_in
acts_upstream_of_or_within
ISO (PMID:22457488)
(PMID:17493606)
CACAO
MGI
PMID:17493606 PMID:22457488 NCBI chrNW_004955419:3,999,364...4,019,543
Ensembl chrNW_004955419:3,998,242...4,018,875
JBrowse link
G Lmx1a LIM homeobox transcription factor 1 alpha acts_upstream_of_or_within ISO (PMID:15183721) MGI PMID:15183721 NCBI chrNW_004955462:11,328,583...11,484,438
Ensembl chrNW_004955462:11,329,676...11,477,770
JBrowse link
G Mapk8ip3 mitogen-activated protein kinase 8 interacting protein 3 acts_upstream_of_or_within ISO (PMID:15572149) MGI PMID:15572149 NCBI chrNW_004955442:15,498,909...15,545,298
Ensembl chrNW_004955442:15,498,909...15,545,298
JBrowse link
G Matn2 matrilin 2 acts_upstream_of_or_within ISO (PMID:19295126) MGI PMID:19295126 NCBI chrNW_004955417:13,646,379...13,760,050
Ensembl chrNW_004955417:13,646,405...13,759,520
JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISO (PMID:30735130) MGI PMID:30735130 NCBI chrNW_004955418:22,537,388...22,701,434
Ensembl chrNW_004955418:22,537,285...22,701,434
JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within ISO (PMID:15880105) MGI PMID:15880105 NCBI chrNW_004955467:8,298,514...8,427,459
Ensembl chrNW_004955467:8,298,527...8,427,459
JBrowse link
G Nectin1 nectin cell adhesion molecule 1 ISO RGD PMID:15328010 RGD:1599806 NCBI chrNW_004955412:20,683,007...20,745,069
Ensembl chrNW_004955412:20,682,861...20,745,069
JBrowse link
G Neurog2 neurogenin 2 acts_upstream_of_or_within ISO (PMID:12895419), (PMID:15328020) MGI PMID:12895419 PMID:15328020 NCBI chrNW_004955457:14,268,078...14,287,050 JBrowse link
G Nfasc neurofascin acts_upstream_of_or_within ISO (PMID:15479642) MGI PMID:15479642 NCBI chrNW_004955406:40,632,971...40,814,930
Ensembl chrNW_004955406:40,743,872...40,808,962
JBrowse link
G Ngfr nerve growth factor receptor acts_upstream_of_or_within ISO (PMID:11978834) MGI PMID:11978834 NCBI chrNW_004955451:12,030,303...12,047,305
Ensembl chrNW_004955451:12,030,252...12,047,305
JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO (PMID:11830575) MGI PMID:11830575 NCBI chrNW_004955409:24,612,490...24,616,360
Ensembl chrNW_004955409:24,612,635...24,616,430
JBrowse link
G Nog noggin acts_upstream_of_or_within ISO (PMID:12435358) MGI PMID:12435358 NCBI chrNW_004955451:6,192,368...6,193,766
Ensembl chrNW_004955451:6,193,042...6,193,740
JBrowse link
G Nr4a3 nuclear receptor subfamily 4 group A member 3 acts_upstream_of_or_within ISO (PMID:15456880) MGI PMID:15456880 NCBI chrNW_004955419:25,779,368...25,817,445
Ensembl chrNW_004955419:25,779,178...25,818,706
JBrowse link
G Nrcam neuronal cell adhesion molecule involved_in ISO (PMID:12182881) UniProt PMID:12182881 NCBI chrNW_004955410:12,437,248...12,518,083
Ensembl chrNW_004955410:12,437,248...12,518,075
JBrowse link
G Nrp1 neuropilin 1 acts_upstream_of_or_within ISO (PMID:15604101), (PMID:15814794)
(PMID:12852851)
(PMID:15814794)
MGI PMID:12852851 PMID:15604101 PMID:15814794 NCBI chrNW_004955462:4,101,997...4,241,012
Ensembl chrNW_004955462:4,101,999...4,241,012
JBrowse link
G Nrp2 neuropilin 2 acts_upstream_of_or_within ISO (PMID:15814794) RGD
MGI
PMID:9288754 PMID:15814794 RGD:633436 NCBI chrNW_004955457:9,197,621...9,316,789
Ensembl chrNW_004955457:9,197,405...9,316,787
JBrowse link
G Ntf3 neurotrophin 3 acts_upstream_of_or_within ISO (PMID:15550985)
(PMID:8861722)
MGI PMID:8861722 PMID:15550985 NCBI chrNW_004955413:3,207,669...3,273,371
Ensembl chrNW_004955413:3,207,123...3,273,491
JBrowse link
G Ntn1 netrin 1 acts_upstream_of_or_within ISO (PMID:10908620), (PMID:16481423), (PMID:17898206)
(PMID:12051827), (PMID:12679031), (PMID:17086203)
MGI PMID:10908620 PMID:12051827 PMID:12679031 PMID:16481423 PMID:17086203 More... NCBI chrNW_004955467:7,795,175...7,991,597
Ensembl chrNW_004955467:7,794,735...7,991,695
JBrowse link
G Ntrk1 neurotrophic receptor tyrosine kinase 1 ISO RGD PMID:18344912 RGD:5684394 NCBI chrNW_004955545:2,929,704...2,947,579
Ensembl chrNW_004955545:2,929,704...2,947,579
JBrowse link
G Otx2 orthodenticle homeobox 2 involved_in ISO (PMID:16267555) UniProt PMID:16267555 NCBI chrNW_004955466:10,755,143...10,764,957
Ensembl chrNW_004955466:10,755,012...10,765,095
JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO (PMID:11967891), (PMID:14586016) MGI PMID:11967891 PMID:14586016 NCBI chrNW_004955476:10,058,979...10,074,668
Ensembl chrNW_004955476:10,058,961...10,074,162
JBrowse link
G Pgrmc1 progesterone receptor membrane component 1 ISO RGD PMID:10656251 RGD:727289 NCBI chrNW_004955534:698,895...706,586
Ensembl chrNW_004955534:698,734...706,946
JBrowse link
G Pla2g10 phospholipase A2 group X acts_upstream_of_or_within ISO (PMID:15927955) MGI PMID:15927955 NCBI chrNW_004955442:4,208,497...4,225,893
Ensembl chrNW_004955442:4,208,575...4,225,834
JBrowse link
G Plxna3 plexin A3 acts_upstream_of_or_within ISO (PMID:11683995) MGI PMID:11683995 NCBI chrNW_004955580:958,033...972,123
Ensembl chrNW_004955580:957,860...972,772
JBrowse link
G Plxna4 plexin A4 acts_upstream_of_or_within ISO (PMID:15814794) MGI PMID:15814794 NCBI chrNW_004955410:35,281,042...35,714,094
Ensembl chrNW_004955410:35,281,648...35,713,453
JBrowse link
G Pou4f2 POU class 4 homeobox 2 acts_upstream_of_or_within ISO (PMID:11163266) MGI PMID:11163266 NCBI chrNW_004955428:2,325,775...2,329,122
Ensembl chrNW_004955428:2,324,834...2,329,205
JBrowse link
G Ptpro protein tyrosine phosphatase receptor type O involved_in ISO (PMID:19800005) UniProt PMID:19800005 NCBI chrNW_004955413:12,019,026...12,248,026
Ensembl chrNW_004955413:12,018,888...12,248,807
JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:17409253) MGI PMID:17409253 NCBI chrNW_004955460:13,270,159...13,295,562
Ensembl chrNW_004955460:13,270,159...13,311,351
JBrowse link
G Reln reelin acts_upstream_of_or_within ISO (PMID:16324103) MGI PMID:16324103 NCBI chrNW_004955410:8,424,439...8,863,966
Ensembl chrNW_004955410:8,424,394...8,863,969
JBrowse link
G Robo1 roundabout guidance receptor 1 acts_upstream_of_or_within ISO (PMID:15084255)
(PMID:15091338)
RGD
MGI
PMID:9458045 PMID:15084255 PMID:15091338 RGD:61733 NCBI chrNW_004955407:12,593,911...13,485,723
Ensembl chrNW_004955407:13,107,235...13,487,053
JBrowse link
G Robo2 roundabout guidance receptor 2 acts_upstream_of_or_within ISO (PMID:15091338) RGD
MGI
PMID:10102268 PMID:15091338 RGD:68763 NCBI chrNW_004955407:14,301,689...15,549,561
Ensembl chrNW_004955407:14,305,498...14,842,790
JBrowse link
G Robo3 roundabout guidance receptor 3 acts_upstream_of_or_within
involved_in
ISO (PMID:15084255)
(PMID:15084255), (PMID:15233918)
(PMID:30843071)
(PMID:25433640), (PMID:26586761)
MGI
UniProt
PMID:15084255 PMID:15233918 PMID:25433640 PMID:26586761 PMID:30843071 NCBI chrNW_004955412:25,937,624...25,953,458
Ensembl chrNW_004955412:25,937,624...25,953,189
JBrowse link
G Runx3 RUNX family transcription factor 3 acts_upstream_of_or_within ISO (PMID:12352981) MGI PMID:12352981 NCBI chrNW_004955452:4,580,444...4,606,820
Ensembl chrNW_004955452:4,579,331...4,636,884
JBrowse link
G Ryk receptor like tyrosine kinase involved_in ISO (PMID:16116452)
(PMID:16723543)
UniProt PMID:16116452 PMID:16723543 NCBI chrNW_004955501:4,360,051...4,419,083
Ensembl chrNW_004955501:4,328,682...4,419,307
JBrowse link
G Scn1b sodium voltage-gated channel beta subunit 1 acts_upstream_of_or_within ISO (PMID:18354028) MGI PMID:18354028 NCBI chrNW_004955468:4,375,517...4,383,383
Ensembl chrNW_004955468:4,375,157...4,383,502
JBrowse link
G Sema3a semaphorin 3A acts_upstream_of_or_within ISO PMID:21068336
(PMID:15604101)
(PMID:17417650), (PMID:17428830)
(PMID:12435358), (PMID:15814794), (PMID:15869472)
MGI PMID:12435358 PMID:15604101 PMID:15814794 PMID:15869472 PMID:17417650 More... RGD:8554551 NCBI chrNW_004955410:2,146,088...2,344,342
Ensembl chrNW_004955410:2,144,388...2,338,973
JBrowse link
G Sema3c semaphorin 3C involved_in ISO (PMID:17021275) UniProt PMID:17021275 NCBI chrNW_004955410:4,795,658...4,953,460
Ensembl chrNW_004955410:4,794,477...4,954,906
JBrowse link
G Sema3f semaphorin 3F acts_upstream_of_or_within ISO (PMID:15814794)
(PMID:12435358)
MGI PMID:12435358 PMID:15814794 NCBI chrNW_004955532:1,992,417...2,015,879
Ensembl chrNW_004955532:1,988,486...2,017,170
JBrowse link
G Sema4f ssemaphorin 4F ISO RGD PMID:10051670 RGD:69991 NCBI chrNW_004955424:11,123,326...11,152,909
Ensembl chrNW_004955424:11,123,263...11,152,907
JBrowse link
G Sema5a semaphorin 5A acts_upstream_of_or_within ISO (PMID:12506007) MGI PMID:12506007 NCBI chrNW_004955504:6,343,747...6,691,945
Ensembl chrNW_004955504:6,350,866...6,762,104
JBrowse link
G Sema6a semaphorin 6A involved_in ISO (PMID:16205717) UniProt PMID:16205717 NCBI chrNW_004955408:36,219,814...36,344,131
Ensembl chrNW_004955408:36,217,588...36,307,284
JBrowse link
G Sema6b semaphorin 6B involved_in ISO (PMID:20484647) UniProt PMID:20484647 NCBI chrNW_004955495:4,387,147...4,399,430
Ensembl chrNW_004955495:4,388,516...4,399,313
JBrowse link
G Sema6c semaphorin 6C ISO RGD PMID:10049528 RGD:69992 NCBI chrNW_004955588:490,581...504,436
Ensembl chrNW_004955588:490,615...500,189
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:12756179), (PMID:15065125)
(PMID:12679031)
MGI PMID:12679031 PMID:12756179 PMID:15065125 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Slit1 slit guidance ligand 1 acts_upstream_of_or_within
involved_in
ISO (PMID:12954717)
(PMID:12051827)
(PMID:15091338)
(PMID:11804571)
(PMID:11748139)
MGI
UniProt
PMID:11748139 PMID:11804571 PMID:12051827 PMID:12954717 PMID:15091338 NCBI chrNW_004955507:3,204,135...3,365,319
Ensembl chrNW_004955507:3,201,556...3,365,471
JBrowse link
G Slit2 slit guidance ligand 2 acts_upstream_of_or_within
involved_in
ISO (PMID:11804571)
(PMID:12879062), (PMID:12954717)
(PMID:15091338)
(PMID:14605369)
(PMID:11748139)
MGI
UniProt
PMID:11748139 PMID:11804571 PMID:12879062 PMID:12954717 PMID:14605369 More... NCBI chrNW_004955480:3,982,977...4,314,160
Ensembl chrNW_004955480:3,984,586...4,313,908
JBrowse link
G Slit3 slit guidance ligand 3 involved_in
acts_upstream_of_or_within
ISO (PMID:11748139)
(PMID:12954717)
UniProt
MGI
PMID:11748139 PMID:12954717 NCBI chrNW_004955408:21,719,487...22,322,958
Ensembl chrNW_004955408:21,722,632...22,322,917
JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO (PMID:21300867) MGI PMID:21300867 NCBI chrNW_004955402:35,956,080...36,001,746
Ensembl chrNW_004955402:35,961,165...35,994,538
JBrowse link
G Tgfb2 transforming growth factor beta 2 acts_upstream_of_or_within ISO (PMID:15528466) MGI PMID:15528466 NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248
JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO (PMID:21646512) MGI PMID:21646512 NCBI chrNW_004955438:11,410,196...11,466,044
Ensembl chrNW_004955438:11,409,982...11,466,523
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 acts_upstream_of_or_within ISO (PMID:29099309) MGI PMID:29099309 NCBI chrNW_004955482:760,200...777,133
Ensembl chrNW_004955482:761,811...777,133
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 acts_upstream_of_or_within ISO (PMID:29099309) MGI PMID:29099309 NCBI chrNW_004955467:818,975...894,103
Ensembl chrNW_004955467:818,076...894,106
JBrowse link
G Unc5a unc-5 netrin receptor A ISO RGD PMID:9126742 RGD:634450 NCBI chrNW_004955408:29,071,812...29,132,744
Ensembl chrNW_004955408:29,071,792...29,132,037
JBrowse link
G Unc5b unc-5 netrin receptor B acts_upstream_of_or_within ISO PMID:21673655 MGI
RGD
PMID:9126742 PMID:21673655 RGD:634450 RGD:8554719 NCBI chrNW_004955437:20,120,996...20,199,877
Ensembl chrNW_004955437:20,120,946...20,199,877
JBrowse link
G Unc5c unc-5 netrin receptor C involved_in
acts_upstream_of_or_within
ISO (PMID:22685302)
(PMID:23144223)
UniProt
MGI
PMID:22685302 PMID:23144223 NCBI chrNW_004955405:5,791,286...6,049,952
Ensembl chrNW_004955405:5,797,590...5,950,544
JBrowse link
G Unc5d unc-5 netrin receptor D acts_upstream_of_or_within ISO (PMID:21673655) MGI PMID:21673655 NCBI chrNW_004955463:11,404,164...11,785,100
Ensembl chrNW_004955463:11,532,711...11,779,202
JBrowse link
G Usp33 ubiquitin specific peptidase 33 involved_in ISO (PMID:19706539) UniProt PMID:19706539 NCBI chrNW_004955423:15,424,349...15,469,344
Ensembl chrNW_004955423:15,423,932...15,469,344
JBrowse link
G Vasp vasodilator stimulated phosphoprotein acts_upstream_of_or_within ISO (PMID:15371503) MGI PMID:15371503 NCBI chrNW_004955574:21,569...33,705
Ensembl chrNW_004955574:21,911...34,197
JBrowse link
G Vax1 ventral anterior homeobox 1 acts_upstream_of_or_within ISO (PMID:10601035) MGI PMID:10601035 NCBI chrNW_004955431:21,853,636...21,857,547
Ensembl chrNW_004955431:21,853,636...21,857,547
JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:18716223) MGI PMID:18716223 NCBI chrNW_004955581:351,375...382,541
Ensembl chrNW_004955581:350,889...382,541
JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO (PMID:21483795) UniProt PMID:21483795 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
axon midline choice point recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G App amyloid beta precursor protein acts_upstream_of_or_within ISO (PMID:8001115) MGI PMID:8001115 NCBI chrNW_004955407:25,725,259...25,973,582
Ensembl chrNW_004955407:25,722,849...25,974,268
JBrowse link
G Diaph1 diaphanous related formin 1 acts_upstream_of_or_within ISO (PMID:23890216) MGI PMID:23890216 NCBI chrNW_004955415:12,156,152...12,272,961
Ensembl chrNW_004955415:12,156,152...12,272,961
JBrowse link
G Diaph2 diaphanous related formin 2 acts_upstream_of_or_within ISO (PMID:23890216) MGI PMID:23890216 NCBI chrNW_004955503:2,324,934...3,132,466
Ensembl chrNW_004955503:2,325,103...2,835,656
JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within ISO (PMID:15240555) MGI PMID:15240555 NCBI chrNW_004955409:31,672,960...31,674,970 JBrowse link
G Robo1 roundabout guidance receptor 1 involved_in ISO (PMID:18986510) UniProt PMID:18986510 RGD:2314842 NCBI chrNW_004955407:12,593,911...13,485,723
Ensembl chrNW_004955407:13,107,235...13,487,053
JBrowse link
G Robo2 roundabout guidance receptor 2 involved_in ISO (PMID:18986510) UniProt PMID:18986510 NCBI chrNW_004955407:14,301,689...15,549,561
Ensembl chrNW_004955407:14,305,498...14,842,790
JBrowse link
G Robo3 roundabout guidance receptor 3 involved_in ISO (PMID:18986510) UniProt PMID:18986510 NCBI chrNW_004955412:25,937,624...25,953,458
Ensembl chrNW_004955412:25,937,624...25,953,189
JBrowse link
axon regeneration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa1 apolipoprotein A1 NOT|acts_upstream_of_or_within ISO (PMID:7798939) MGI PMID:7798939 NCBI chrNW_004955412:18,170,331...18,172,298
Ensembl chrNW_004955412:18,170,331...18,172,298
JBrowse link
G Apoe apolipoprotein E NOT|acts_upstream_of_or_within ISO (PMID:7798939) MGI PMID:7798939 NCBI chrNW_004955555:1,998,170...2,002,003
Ensembl chrNW_004955555:1,999,711...2,001,888
JBrowse link
G Bcl2 BCL2 apoptosis regulator acts_upstream_of_or_within ISO (PMID:9009190) MGI PMID:9009190 NCBI chrNW_004955402:46,911,125...47,084,214
Ensembl chrNW_004955402:46,916,266...47,084,485
JBrowse link
G Bex2 brain expressed X-linked 2 acts_upstream_of_or_within ISO (PMID:20731761) MGI PMID:20731761 NCBI chrNW_004955548:439,061...505,418 JBrowse link
G Chl1 cell adhesion molecule L1 like ISO RGD PMID:14707551 RGD:1303346 NCBI chrNW_004955421:12,763,432...12,957,852
Ensembl chrNW_004955421:12,763,287...12,958,065
JBrowse link
G Cntf ciliary neurotrophic factor involved_in ISO PMID:16699509 UniProt PMID:16699509 RGD:12793002 NCBI chrNW_004955511:3,527,552...3,531,275
Ensembl chrNW_004955511:3,527,552...3,534,348
JBrowse link
G Cspg5 chondroitin sulfate proteoglycan 5 ISO RGD PMID:11069908 RGD:1298825 NCBI chrNW_004955420:24,735,155...24,746,580
Ensembl chrNW_004955420:24,734,561...24,747,414
JBrowse link
G Ctnna1 catenin alpha 1 ISO RGD PMID:12387456 RGD:632464 NCBI chrNW_004955418:1,592,555...1,754,423
Ensembl chrNW_004955418:1,592,229...1,754,689
JBrowse link
G Dag1 dystroglycan 1 ISO RGD PMID:16228655 RGD:11537480 NCBI chrNW_004955532:1,446,553...1,465,310
Ensembl chrNW_004955532:1,397,900...1,466,312
JBrowse link
G Dhfr dihydrofolate reductase involved_in ISO PMID:20424322 BHF-UCL PMID:20424322 RGD:10054082 NCBI chrNW_004955418:29,274,170...29,283,028 JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:21935678) MGI PMID:21935678 NCBI chrNW_004955436:12,416,147...12,477,214
Ensembl chrNW_004955436:12,415,737...12,480,359
JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISO RGD PMID:23437108 RGD:405650403 NCBI chrNW_004955451:14,442,816...14,456,009
Ensembl chrNW_004955451:14,442,816...14,459,379
JBrowse link
G Folr1 folate receptor alpha involved_in ISO (PMID:20424322) BHF-UCL PMID:20424322 NCBI chrNW_004955414:19,188,830...19,197,728
Ensembl chrNW_004955414:19,187,388...19,197,728
JBrowse link
G Isl1 ISL LIM homeobox 1 ISO RGD PMID:10363827 RGD:2311122 NCBI chrNW_004955446:15,824,956...15,835,000
Ensembl chrNW_004955446:15,824,035...15,835,046
JBrowse link
G Jak2 Janus kinase 2 ISO RGD PMID:15716400 RGD:1641846 NCBI chrNW_004955434:9,227,897...9,341,208
Ensembl chrNW_004955434:9,227,595...9,341,208
JBrowse link
G Jam3 junctional adhesion molecule 3 ISO RGD PMID:22950044 RGD:7488944 NCBI chrNW_004955412:34,901,850...34,967,394
Ensembl chrNW_004955412:34,901,681...34,967,394
JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit acts_upstream_of_or_within ISO (PMID:15233917) MGI PMID:15233917 NCBI chrNW_004955464:1,107,598...1,110,326 JBrowse link
G Mag myelin associated glycoprotein acts_upstream_of_or_within ISO (PMID:20731761) MGI PMID:20731761 NCBI chrNW_004955468:4,584,068...4,598,772
Ensembl chrNW_004955468:4,584,162...4,598,914
JBrowse link
G Mapk8ip3 mitogen-activated protein kinase 8 interacting protein 3 involved_in ISO PMID:25944905 UniProt PMID:25944905 RGD:13673780 NCBI chrNW_004955442:15,498,909...15,545,298
Ensembl chrNW_004955442:15,498,909...15,545,298
JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase involved_in ISO PMID:20424322 BHF-UCL PMID:20424322 RGD:10054082 NCBI chrNW_004955492:3,372,915...3,474,173
Ensembl chrNW_004955492:3,376,512...3,474,180
JBrowse link
G Nefh neurofilament heavy chain ISO RGD PMID:10646539 RGD:9698439 NCBI chrNW_004955455:3,735,330...3,744,714
Ensembl chrNW_004955455:3,735,410...3,744,107
JBrowse link
G Nefm neurofilament medium chain ISO RGD PMID:15206821 RGD:9698447 NCBI chrNW_004955403:47,920,408...47,926,922 JBrowse link
G Nrep neuronal regeneration related protein ISO RGD PMID:15485502 RGD:1540387 NCBI chrNW_004955418:3,435,784...3,464,667
Ensembl chrNW_004955418:3,436,731...3,464,667
JBrowse link
G Rxra retinoid X receptor alpha ISO RGD PMID:16782282 RGD:1643108 NCBI chrNW_004955513:3,313,544...3,386,544
Ensembl chrNW_004955513:3,335,897...3,386,994
JBrowse link
G Vcan versican ISO RGD PMID:12526031 RGD:632591 NCBI chrNW_004955418:26,967,595...27,078,430 JBrowse link
axon target recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain derived neurotrophic factor acts_upstream_of_or_within ISO (PMID:15464571) MGI PMID:15464571 NCBI chrNW_004955476:6,773,244...6,822,201
Ensembl chrNW_004955476:6,772,088...6,822,588
JBrowse link
G Foxb1 forkhead box B1 involved_in ISO (PMID:10662642), (PMID:11170346) UniProt PMID:10662642 PMID:11170346 NCBI chrNW_004955450:14,867,941...14,902,990 JBrowse link
G Stxbp1 syntaxin binding protein 1 acts_upstream_of_or_within ISO (PMID:15182301) MGI PMID:15182301 NCBI chrNW_004955419:963,829...1,000,759
Ensembl chrNW_004955419:963,829...1,000,759
JBrowse link
G Uchl1 ubiquitin C-terminal hydrolase L1 acts_upstream_of_or_within ISO (PMID:8474599) MGI PMID:8474599 NCBI chrNW_004955443:6,367,519...6,379,638
Ensembl chrNW_004955443:6,367,460...6,380,462
JBrowse link
axonal fasciculation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amigo1 adhesion molecule with Ig like domain 1 involved_in ISO PMID:12629050 UniProt PMID:12629050 RGD:634626 NCBI chrNW_004955435:12,918,270...12,930,362
Ensembl chrNW_004955435:12,924,240...12,930,362
JBrowse link
G Arhgap35 Rho GTPase activating protein 35 involved_in ISO (PMID:11283609) UniProt PMID:11283609 NCBI chrNW_004955574:915,604...984,744
Ensembl chrNW_004955574:915,325...984,744
JBrowse link
G Casp3 caspase 3 ISO RGD PMID:25898930 RGD:13781947 NCBI chrNW_004955403:24,315,712...24,326,271 JBrowse link
G Casp6 caspase 6 ISO RGD PMID:25898930 RGD:13781947 NCBI chrNW_004955496:575,839...584,287
Ensembl chrNW_004955496:577,832...584,287
JBrowse link
G Cdk5r1 cyclin dependent kinase 5 regulatory subunit 1 involved_in ISO (PMID:10545161) UniProt PMID:10545161 NCBI chrNW_004955481:7,408,089...7,411,813
Ensembl chrNW_004955481:7,408,205...7,409,128
JBrowse link
G Celsr3 cadherin EGF LAG seven-pass G-type receptor 3 acts_upstream_of_or_within ISO (PMID:15778712) MGI PMID:15778712 NCBI chrNW_004955532:724,306...749,192
Ensembl chrNW_004955532:725,243...749,173
JBrowse link
G Cnr1 cannabinoid receptor 1 acts_upstream_of_or_within ISO (PMID:20962221) MGI PMID:20962221 NCBI chrNW_004955411:15,052,151...15,077,320
Ensembl chrNW_004955411:15,052,163...15,077,320
JBrowse link
G Cntn2 contactin 2 acts_upstream_of_or_within ISO (PMID:18650339) MGI PMID:18650339 NCBI chrNW_004955406:40,831,897...40,862,445
Ensembl chrNW_004955406:40,831,850...40,858,569
JBrowse link
G Crtac1 cartilage acidic protein 1 acts_upstream_of_or_within ISO (PMID:21817055) MGI PMID:21817055 NCBI chrNW_004955507:3,916,803...4,062,118
Ensembl chrNW_004955507:3,916,625...4,062,118
JBrowse link
G Ephb2 EPH receptor B2 involved_in ISO (PMID:8947026) UniProt PMID:8947026 NCBI chrNW_004955452:2,844,713...2,986,790
Ensembl chrNW_004955452:2,844,713...2,980,445
JBrowse link
G Ephb3 EPH receptor B3 involved_in ISO (PMID:8947026) UniProt PMID:8947026 NCBI chrNW_004955420:22,900,588...22,919,924
Ensembl chrNW_004955420:22,901,337...22,920,712
JBrowse link
G Fezf2 FEZ family zinc finger 2 acts_upstream_of_or_within ISO (PMID:16284245) MGI PMID:16284245 NCBI chrNW_004955517:3,439,999...3,443,477
Ensembl chrNW_004955517:3,439,999...3,443,846
JBrowse link
G L1cam L1 cell adhesion molecule ISO RGD PMID:3856258 RGD:11570517 NCBI chrNW_004955580:548,442...561,580
Ensembl chrNW_004955580:549,368...561,486
JBrowse link
G Ncam1 neural cell adhesion molecule 1 ISO RGD PMID:3856258 RGD:11570517 NCBI chrNW_004955412:14,630,109...14,923,847
Ensembl chrNW_004955412:14,630,443...14,923,926
JBrowse link
G Ncam2 neural cell adhesion molecule 2 ISO RGD PMID:15174086 RGD:1303997 NCBI chrNW_004955407:21,730,331...22,220,664
Ensembl chrNW_004955407:21,730,434...22,215,377
JBrowse link
G Ndn necdin, MAGE family member acts_upstream_of_or_within ISO (PMID:15972963) MGI PMID:15972963 NCBI chrNW_004955416:31,125,354...31,127,010
Ensembl chrNW_004955416:31,125,924...31,126,889
JBrowse link
G Nrp1 neuropilin 1 acts_upstream_of_or_within ISO (PMID:17428830) MGI PMID:17428830 NCBI chrNW_004955462:4,101,997...4,241,012
Ensembl chrNW_004955462:4,101,999...4,241,012
JBrowse link
G Ptprz1 protein tyrosine phosphatase receptor type Z1 ISO RGD PMID:16150606 RGD:9590115 NCBI chrNW_004955479:3,611,658...3,734,225
Ensembl chrNW_004955479:3,624,993...3,733,183
JBrowse link
G Rtn4 reticulon 4 involved_in ISO PMID:20573699
(PMID:20573699)
UniProt PMID:20573699 RGD:8554113 NCBI chrNW_004955424:28,061,346...28,125,838 JBrowse link
G Sema3a semaphorin 3A acts_upstream_of_or_within ISO (PMID:17428830) MGI PMID:17428830 NCBI chrNW_004955410:2,146,088...2,344,342
Ensembl chrNW_004955410:2,144,388...2,338,973
JBrowse link
G Sema5a semaphorin 5A involved_in ISO PMID:15603739 UniProt PMID:15603739 RGD:8553809 NCBI chrNW_004955504:6,343,747...6,691,945
Ensembl chrNW_004955504:6,350,866...6,762,104
JBrowse link
G Tnfrsf21 TNF receptor superfamily member 21 ISO RGD PMID:25898930 RGD:13781947 NCBI chrNW_004955437:11,877,051...11,915,220
Ensembl chrNW_004955437:11,876,895...11,915,460
JBrowse link
axonogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin beta ISO RGD PMID:12504890 RGD:728124 NCBI chrNW_004955460:10,358,100...10,361,585
Ensembl chrNW_004955460:10,356,699...10,361,585
JBrowse link
G Adcy1 adenylate cyclase 1 acts_upstream_of_or_within ISO (PMID:17229090) MGI PMID:17229090 NCBI chrNW_004955456:6,833,992...6,930,990
Ensembl chrNW_004955456:6,841,637...6,930,990
JBrowse link
G Afg3l2 AFG3 like matrix AAA peptidase subunit 2 involved_in
acts_upstream_of_or_within
ISO (PMID:27642048)
(PMID:2917690)
UniProt
MGI
PMID:2917690 PMID:27642048 NCBI chrNW_004955402:1,037,414...1,069,165
Ensembl chrNW_004955402:1,037,402...1,069,165
JBrowse link
G Als2 alsin Rho guanine nucleotide exchange factor ALS2 ISO RGD PMID:16802292 RGD:1599082 NCBI chrNW_004955403:22,449...104,577
Ensembl chrNW_004955403:22,449...104,948
JBrowse link
G Amigo1 adhesion molecule with Ig like domain 1 ISO RGD PMID:12629050 RGD:634626 NCBI chrNW_004955435:12,918,270...12,930,362
Ensembl chrNW_004955435:12,924,240...12,930,362
JBrowse link
G Ank3 ankyrin 3 involved_in ISO (PMID:11724816) BHF-UCL PMID:11724816 NCBI chrNW_004955425:13,522,233...13,851,286 JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (PMID:18716223)
(PMID:15207235), (PMID:18716223)
MGI PMID:15207235 PMID:18716223 NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G App amyloid beta precursor protein acts_upstream_of_or_within ISO (PMID:9390996) MGI PMID:9390996 NCBI chrNW_004955407:25,725,259...25,973,582
Ensembl chrNW_004955407:25,722,849...25,974,268
JBrowse link
G Ark2c arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C acts_upstream_of_or_within ISO (PMID:23610558) MGI PMID:23610558 NCBI chrNW_004955402:31,867,651...31,975,930
Ensembl chrNW_004955402:31,867,645...31,969,804
JBrowse link
G Atl1 atlastin GTPase 1 involved_in ISO PMID:16537571 UniProt PMID:16537571 RGD:8553504 NCBI chrNW_004955409:12,222,591...12,301,990
Ensembl chrNW_004955409:12,222,591...12,301,990
JBrowse link
G Bcl11b BCL11 transcription factor B acts_upstream_of_or_within ISO (PMID:15664173) MGI PMID:15664173 NCBI chrNW_004955438:20,562,345...20,637,662
Ensembl chrNW_004955438:20,564,449...20,637,103
JBrowse link
G Bcl2 BCL2 apoptosis regulator acts_upstream_of_or_within ISO (PMID:9009190) MGI PMID:9009190 NCBI chrNW_004955402:46,911,125...47,084,214
Ensembl chrNW_004955402:46,916,266...47,084,485
JBrowse link
G Brsk1 BR serine/threonine kinase 1 involved_in ISO (PMID:17482548) UniProt PMID:17482548 NCBI chrNW_004955567:924,728...943,092
Ensembl chrNW_004955567:924,734...943,701
JBrowse link
G Brsk2 BR serine/threonine kinase 2 involved_in ISO (PMID:17482548) UniProt PMID:17482548 NCBI chrNW_004955476:10,911,515...10,951,544
Ensembl chrNW_004955476:10,911,515...10,929,183
JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F acts_upstream_of_or_within ISO (PMID:16155113) MGI PMID:16155113 NCBI chrNW_004955543:692,035...717,364
Ensembl chrNW_004955543:692,035...717,364
JBrowse link
G Cck cholecystokinin acts_upstream_of_or_within ISO (PMID:15152034) MGI PMID:15152034 NCBI chrNW_004955420:28,438,806...28,443,458
Ensembl chrNW_004955420:28,438,806...28,443,458
JBrowse link
G Cckar cholecystokinin A receptor acts_upstream_of_or_within ISO (PMID:15152034) MGI PMID:15152034 NCBI chrNW_004955443:18,738,029...18,748,684
Ensembl chrNW_004955443:18,737,974...18,748,727
JBrowse link
G Cdk5 cyclin dependent kinase 5 acts_upstream_of_or_within ISO (PMID:11163260) MGI PMID:11163260 NCBI chrNW_004955491:5,491,744...5,497,280
Ensembl chrNW_004955491:5,491,744...5,497,280
JBrowse link
G Cnp 2',3'-cyclic nucleotide 3' phosphodiesterase acts_upstream_of_or_within ISO (PMID:12590258) MGI PMID:12590258 NCBI chrNW_004955451:16,115,137...16,119,261
Ensembl chrNW_004955451:16,114,454...16,118,622
JBrowse link
G Cntn2 contactin 2 ISO RGD PMID:2317872 RGD:727707 NCBI chrNW_004955406:40,831,897...40,862,445
Ensembl chrNW_004955406:40,831,850...40,858,569
JBrowse link
G Cntnap1 contactin associated protein 1 involved_in ISO (PMID:28370195) MGI PMID:28370195 NCBI chrNW_004955451:16,535,924...16,547,800
Ensembl chrNW_004955451:16,536,416...16,547,213
JBrowse link
G Cntnap2 contactin associated protein 2 involved_in ISO (PMID:28370195) MGI PMID:28370195 NCBI chrNW_004955491:1,983,002...3,982,510
Ensembl chrNW_004955491:1,984,050...3,981,830
JBrowse link
G Creb1 cAMP responsive element binding protein 1 acts_upstream_of_or_within ISO (PMID:11988169) MGI PMID:11988169 NCBI chrNW_004955457:7,424,403...7,490,630
Ensembl chrNW_004955457:7,431,736...7,491,149
JBrowse link
G Ctnna2 catenin alpha 2 involved_in ISO (PMID:16691566) UniProt PMID:16691566 NCBI chrNW_004955424:5,985,170...7,055,830
Ensembl chrNW_004955424:5,986,073...6,911,826
JBrowse link
G Dab1 DAB adaptor protein 1 acts_upstream_of ISO (PMID:21111240) MGI PMID:21111240 NCBI chrNW_004955464:2,325,529...2,721,497
Ensembl chrNW_004955464:2,455,346...2,724,358
JBrowse link
G Dclk1 doublecortin like kinase 1 acts_upstream_of_or_within ISO (PMID:16387639) MGI PMID:16387639 NCBI chrNW_004955431:9,975,629...10,302,605
Ensembl chrNW_004955431:9,975,262...10,297,010
JBrowse link
G Dlx5 distal-less homeobox 5 acts_upstream_of_or_within ISO (PMID:12533617) MGI PMID:12533617 NCBI chrNW_004955432:13,429,832...13,434,160
Ensembl chrNW_004955432:13,429,415...13,434,258
JBrowse link
G Dock7 dedicator of cytokinesis 7 involved_in ISO (PMID:16982419) BHF-UCL PMID:16982419 NCBI chrNW_004955423:27,043,621...27,233,710
Ensembl chrNW_004955423:27,044,341...27,233,710
JBrowse link
G Drd2 dopamine receptor D2 acts_upstream_of_or_within ISO (PMID:11438590) MGI PMID:11438590 NCBI chrNW_004955412:15,054,255...15,114,558
Ensembl chrNW_004955412:15,054,038...15,114,573
JBrowse link
G Drgx dorsal root ganglia homeobox acts_upstream_of_or_within ISO (PMID:11498051) MGI PMID:11498051 NCBI chrNW_004955556:842,714...870,248
Ensembl chrNW_004955556:842,714...870,248
JBrowse link
G Dst dystonin acts_upstream_of_or_within ISO (PMID:1634998) MGI PMID:1634998 NCBI chrNW_004955502:3,175,918...3,610,823
Ensembl chrNW_004955502:3,267,527...3,610,823
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO (PMID:14734535) MGI PMID:14734535 NCBI chrNW_004955486:9,464,390...9,469,984
Ensembl chrNW_004955486:9,464,313...9,469,984
JBrowse link
G Ephb2 EPH receptor B2 acts_upstream_of ISO (PMID:12971893) MGI PMID:12971893 NCBI chrNW_004955452:2,844,713...2,986,790
Ensembl chrNW_004955452:2,844,713...2,980,445
JBrowse link
G Erbb3 erb-b2 receptor tyrosine kinase 3 ISO RGD PMID:9030624 RGD:68774 NCBI chrNW_004955458:3,683,126...3,701,752
Ensembl chrNW_004955458:3,683,126...3,702,978
JBrowse link
G Fam168b family with sequence similarity 168 member B acts_upstream_of_or_within ISO (PMID:20716133) MGI PMID:20716133 NCBI chrNW_004955459:534,682...567,651
Ensembl chrNW_004955459:534,682...567,652
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:17951031) MGI PMID:17951031 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
G Flot1 flotillin 1 acts_upstream_of_or_within ISO (PMID:19458231) MGI PMID:19458231 NCBI chrNW_004955583:717,246...729,924
Ensembl chrNW_004955583:713,560...729,924
JBrowse link
G Golga2 golgin A2 acts_upstream_of ISO (PMID:21111240) MGI PMID:21111240 NCBI chrNW_004955570:782,218...799,044 JBrowse link
G Gsk3b glycogen synthase kinase 3 beta acts_upstream_of_or_within ISO (PMID:18716223) MGI PMID:18716223 NCBI chrNW_004955427:19,489,972...19,671,137
Ensembl chrNW_004955427:19,495,422...19,671,137
JBrowse link
G Igf1r insulin like growth factor 1 receptor ISO RGD PMID:16845384 RGD:1624300 NCBI chrNW_004955416:26,101,090...26,382,660
Ensembl chrNW_004955416:26,102,628...26,382,666
JBrowse link
G Kalrn kalirin RhoGEF kinase ISO RGD PMID:12177196 RGD:628431 NCBI chrNW_004955427:23,184,751...23,823,128
Ensembl chrNW_004955427:23,184,739...23,816,811
JBrowse link
G Klf7 KLF transcription factor 7 acts_upstream_of_or_within ISO (PMID:15964824) MGI PMID:15964824 NCBI chrNW_004955457:7,833,711...7,918,754
Ensembl chrNW_004955457:7,833,218...7,918,754
JBrowse link
G Llgl1 LLGL scribble cell polarity complex component 1 involved_in ISO PMID:21856246 UniProt PMID:21856246 RGD:8553614 NCBI chrNW_004955478:11,075,399...11,089,818
Ensembl chrNW_004955478:11,075,399...11,089,839
JBrowse link
G Map1b microtubule associated protein 1B acts_upstream_of_or_within ISO (PMID:11891784) MGI PMID:11891784 NCBI chrNW_004955575:914,607...1,020,971
Ensembl chrNW_004955575:913,723...1,021,028
JBrowse link
G Map2 microtubule associated protein 2 acts_upstream_of_or_within ISO (PMID:11891784)
(PMID:11891784), (PMID:20600662)
MGI PMID:11891784 PMID:20600662 NCBI chrNW_004955457:5,678,826...5,816,114
Ensembl chrNW_004955457:5,678,436...5,875,024
JBrowse link
G Mapt microtubule associated protein tau acts_upstream_of_or_within ISO (PMID:11891784) MGI PMID:11891784 NCBI chrNW_004955478:10,222,439...10,271,439
Ensembl chrNW_004955478:10,225,823...10,271,442
JBrowse link
G Metrn meteorin, glial cell differentiation regulator acts_upstream_of ISO (PMID:15085178) MGI PMID:15085178 NCBI chrNW_004955442:16,485,482...16,488,949
Ensembl chrNW_004955442:16,485,482...16,488,949
JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within ISO (PMID:11283949) MGI PMID:11283949 NCBI chrNW_004955467:8,298,514...8,427,459
Ensembl chrNW_004955467:8,298,527...8,427,459
JBrowse link
G Ndn necdin, MAGE family member acts_upstream_of_or_within ISO (PMID:15649943), (PMID:15972963) MGI PMID:15649943 PMID:15972963 NCBI chrNW_004955416:31,125,354...31,127,010
Ensembl chrNW_004955416:31,125,924...31,126,889
JBrowse link
G Nefl neurofilament light chain acts_upstream_of ISO (PMID:7946341) MGI PMID:7946341 NCBI chrNW_004955403:47,946,413...47,951,734
Ensembl chrNW_004955403:47,946,353...47,952,026
JBrowse link
G Nkx2-8 NK2 homeobox 8 acts_upstream_of_or_within ISO (PMID:16267219) MGI PMID:16267219 NCBI chrNW_004955409:24,529,414...24,531,293
Ensembl chrNW_004955409:24,529,594...24,530,998
JBrowse link
G Nolc1 nucleolar and coiled-body phosphoprotein 1 acts_upstream_of_or_within ISO (PMID:24794856) MGI PMID:24794856 NCBI chrNW_004955485:8,187,078...8,197,952
Ensembl chrNW_004955485:8,188,680...8,197,891
JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:15598981)
(PMID:16120638)
MGI PMID:15598981 PMID:16120638 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259
JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in ISO (PMID:30249793)
(PMID:17954614)
MGI PMID:17954614 PMID:30249793 NCBI chrNW_004955472:506,351...523,647
Ensembl chrNW_004955472:506,351...523,316
JBrowse link
G Ntn1 netrin 1 acts_upstream_of_or_within ISO (PMID:10908620) MGI PMID:10908620 NCBI chrNW_004955467:7,795,175...7,991,597
Ensembl chrNW_004955467:7,794,735...7,991,695
JBrowse link
G Ntng1 netrin G1 acts_upstream_of_or_within ISO (PMID:11804778) MGI PMID:11804778 NCBI chrNW_004955435:10,923,557...11,247,091
Ensembl chrNW_004955435:10,923,490...11,248,995
JBrowse link
G Ntng2 netrin G2 acts_upstream_of_or_within ISO (PMID:11804778) MGI PMID:11804778 NCBI chrNW_004955513:1,654,398...1,701,062 JBrowse link
G Numb NUMB endocytic adaptor protein acts_upstream_of_or_within ISO (PMID:15598981) MGI PMID:15598981 NCBI chrNW_004955523:2,025,652...2,076,037 JBrowse link
G Numbl NUMB like endocytic adaptor protein acts_upstream_of_or_within ISO (PMID:15598981) MGI PMID:15598981 NCBI chrNW_004955578:636,298...661,566
Ensembl chrNW_004955578:636,282...661,566
JBrowse link
G Pak3 p21 (RAC1) activated kinase 3 involved_in ISO (PMID:21115725) UniProt PMID:21115725 NCBI chrNW_004955490:4,538,933...4,833,851
Ensembl chrNW_004955490:4,545,457...4,662,862
JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO (PMID:15514979) MGI PMID:15514979 NCBI chrNW_004955476:10,058,979...10,074,668
Ensembl chrNW_004955476:10,058,961...10,074,162
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein involved_in ISO (PMID:18842885) BHF-UCL PMID:18842885 RGD:8554167 NCBI chrNW_004955414:6,871,220...6,970,569
Ensembl chrNW_004955414:6,871,520...6,969,208
JBrowse link
G Pip5k1c phosphatidylinositol-4-phosphate 5-kinase type 1 gamma acts_upstream_of_or_within ISO (PMID:14741049) MGI PMID:14741049 NCBI chrNW_004955495:5,573,549...5,616,957
Ensembl chrNW_004955495:5,573,549...5,617,847
JBrowse link
G Pitpna phosphatidylinositol transfer protein alpha involved_in ISO (PMID:16244667) BHF-UCL PMID:16244667 NCBI chrNW_004955481:1,611,579...1,649,481
Ensembl chrNW_004955481:1,611,830...1,645,753
JBrowse link
G Plppr4 phospholipid phosphatase related 4 ISO RGD PMID:12730698 RGD:1299556 NCBI chrNW_004955435:4,085,918...4,112,207
Ensembl chrNW_004955435:4,091,165...4,114,376
JBrowse link
G Pou4f2 POU class 4 homeobox 2 acts_upstream_of_or_within ISO (PMID:10357904) MGI PMID:10357904 NCBI chrNW_004955428:2,325,775...2,329,122
Ensembl chrNW_004955428:2,324,834...2,329,205
JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO (PMID:25190059) MGI PMID:25190059 NCBI chrNW_004955500:1,897,899...1,990,791
Ensembl chrNW_004955500:1,897,912...1,990,875
JBrowse link
G Ptk2 protein tyrosine kinase 2 acts_upstream_of ISO (PMID:15378065) MGI PMID:15378065 NCBI chrNW_004955461:14,337,914...14,622,779
Ensembl chrNW_004955461:14,337,914...14,556,931
JBrowse link
G Ptpn11 protein tyrosine phosphatase non-receptor type 11 acts_upstream_of_or_within ISO (PMID:12482708) MGI PMID:12482708 NCBI chrNW_004955482:8,934,734...9,031,230
Ensembl chrNW_004955482:8,934,306...9,035,203
JBrowse link
G Ptprz1 protein tyrosine phosphatase receptor type Z1 acts_upstream_of_or_within ISO (PMID:10234020) MGI PMID:10234020 NCBI chrNW_004955479:3,611,658...3,734,225
Ensembl chrNW_004955479:3,624,993...3,733,183
JBrowse link
G Rab10 RAB10, member RAS oncogene family involved_in ISO PMID:21856246 UniProt PMID:21856246 RGD:8553614 NCBI chrNW_004955469:8,057,235...8,138,983
Ensembl chrNW_004955469:8,057,235...8,138,983
JBrowse link
G Rab3a RAB3A, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:11359932) MGI PMID:11359932 NCBI chrNW_004955524:3,220,108...3,224,376
Ensembl chrNW_004955524:3,221,366...3,224,376
JBrowse link
G Rab8a RAB8A, member RAS oncogene family involved_in ISO PMID:21856246 UniProt PMID:21856246 RGD:8553614 NCBI chrNW_004955524:1,403,811...1,416,005
Ensembl chrNW_004955524:1,403,811...1,416,005
JBrowse link
G Rtn4r reticulon 4 receptor acts_upstream_of_or_within ISO (PMID:11201742) MGI PMID:11201742 NCBI chrNW_004955442:17,866,508...17,891,803
Ensembl chrNW_004955442:17,866,398...17,891,820
JBrowse link
G Ryk receptor like tyrosine kinase acts_upstream_of_or_within
involved_in
ISO (PMID:15454084)
PMID:23517308
MGI
ParkinsonsUK-UCL
PMID:15454084 PMID:23517308 RGD:11054651 NCBI chrNW_004955501:4,360,051...4,419,083
Ensembl chrNW_004955501:4,328,682...4,419,307
JBrowse link
G Scn11a sodium voltage-gated channel alpha subunit 11 involved_in ISO (PMID:22641814) MGI PMID:22641814 NCBI chrNW_004955427:24,917,709...25,109,499
Ensembl chrNW_004955427:24,989,615...25,109,550
JBrowse link
G Sema4a semaphorin 4A involved_in ISO (PMID:20043131) UniProt PMID:20043131 NCBI chrNW_004955545:2,316,402...2,341,873
Ensembl chrNW_004955545:2,316,390...2,342,233
JBrowse link
G Sema4d semaphorin 4D acts_upstream_of ISO (PMID:15330859) MGI PMID:15330859 NCBI chrNW_004955515:2,573,816...2,676,387
Ensembl chrNW_004955515:2,608,331...2,689,326
JBrowse link
G Shtn1 shootin 1 acts_upstream_of_or_within
involved_in
ISO PMID:17030985
PMID:17439943
MGI
HGNC-UCL
PMID:17030985 PMID:17439943 RGD:8554246 RGD:8554472 NCBI chrNW_004955431:21,653,415...21,734,160
Ensembl chrNW_004955431:21,653,415...21,734,426
JBrowse link
G Slit1 slit guidance ligand 1 acts_upstream_of_or_within ISO (PMID:12097499) MGI PMID:12097499 NCBI chrNW_004955507:3,204,135...3,365,319
Ensembl chrNW_004955507:3,201,556...3,365,471
JBrowse link
G Slit2 slit guidance ligand 2 acts_upstream_of_or_within ISO (PMID:12097499) MGI PMID:12097499 NCBI chrNW_004955480:3,982,977...4,314,160
Ensembl chrNW_004955480:3,984,586...4,313,908
JBrowse link
G Slitrk1 SLIT and NTRK like family member 1 acts_upstream_of_or_within ISO (PMID:14550773) MGI PMID:14550773 NCBI chrNW_004955404:24,436,394...24,439,749
Ensembl chrNW_004955404:24,437,299...24,439,389
JBrowse link
G Slitrk2 SLIT and NTRK like family member 2 involved_in
acts_upstream_of_or_within
ISO (PMID:35840571)
(PMID:14550773)
UniProt
MGI
PMID:14550773 PMID:35840571 NCBI chrNW_004955585:479,798...488,046
Ensembl chrNW_004955585:479,798...486,363
JBrowse link
G Slitrk3 SLIT and NTRK like family member 3 acts_upstream_of_or_within ISO (PMID:14550773) MGI PMID:14550773 NCBI chrNW_004955448:14,846,976...14,852,612
Ensembl chrNW_004955448:14,846,976...14,852,612
JBrowse link
G Slitrk4 SLIT and NTRK like family member 4 acts_upstream_of_or_within ISO (PMID:14550773) MGI PMID:14550773 NCBI chrNW_004955539:1,929,681...1,942,525
Ensembl chrNW_004955539:1,929,681...1,942,525
JBrowse link
G Slitrk5 SLIT and NTRK like family member 5 acts_upstream_of_or_within ISO (PMID:14550773) MGI PMID:14550773 NCBI chrNW_004955404:21,342,379...21,350,803
Ensembl chrNW_004955404:21,342,379...21,350,464
JBrowse link
G Slitrk6 SLIT and NTRK like family member 6 acts_upstream_of_or_within ISO (PMID:14550773) MGI PMID:14550773 NCBI chrNW_004955404:22,738,080...22,744,601
Ensembl chrNW_004955404:22,737,974...22,745,046
JBrowse link
G Snap25 synaptosome associated protein 25 ISO RGD PMID:15478103 RGD:1581079 NCBI chrNW_004955415:20,133,361...20,218,840
Ensembl chrNW_004955415:20,133,201...20,219,023
JBrowse link
G Snap91 synaptosome associated protein 91 involved_in ISO PMID:18842885 BHF-UCL PMID:18842885 RGD:8554167 NCBI chrNW_004955411:11,175,587...11,301,145
Ensembl chrNW_004955411:11,175,525...11,300,950
JBrowse link
G Sptbn4 spectrin beta, non-erythrocytic 4 acts_upstream_of_or_within ISO (PMID:1634998) MGI PMID:1634998 NCBI chrNW_004955578:730,916...813,740
Ensembl chrNW_004955578:731,814...810,065
JBrowse link
G Ssna1 SS nuclear autoantigen 1 involved_in ISO (PMID:30250060) UniProt PMID:30250060 NCBI chrNW_004955513:5,194,308...5,195,721
Ensembl chrNW_004955513:5,194,308...5,195,721
JBrowse link
G Stk11 serine/threonine kinase 11 acts_upstream_of
involved_in
ISO (PMID:21111240)
(PMID:17482548)
MGI
UniProt
RGD
PMID:12114407 PMID:17482548 PMID:21111240 RGD:2291948 NCBI chrNW_004955495:6,678,195...6,699,408
Ensembl chrNW_004955495:6,678,195...6,699,058
JBrowse link
G Stk25 serine/threonine kinase 25 acts_upstream_of ISO (PMID:21111240) MGI PMID:21111240 NCBI chrNW_004955542:268,406...279,323
Ensembl chrNW_004955542:272,715...280,110
JBrowse link
G Stmn1 stathmin 1 acts_upstream_of_or_within ISO (PMID:11839567) MGI PMID:11839567 NCBI chrNW_004955452:5,387,696...5,393,337
Ensembl chrNW_004955452:5,388,150...5,391,518
JBrowse link
G Syngap1 synaptic Ras GTPase activating protein 1 acts_upstream_of ISO (PMID:15014045) MGI PMID:15014045 NCBI chrNW_004955437:1,950,559...1,981,004
Ensembl chrNW_004955437:1,950,602...1,979,251
JBrowse link
G Taok2 TAO kinase 2 involved_in ISO (PMID:22683681) ARUK-UCL PMID:22683681 NCBI chrNW_004955493:6,968,537...6,986,608
Ensembl chrNW_004955493:6,969,096...6,985,878
JBrowse link
G Tbce tubulin folding cofactor E acts_upstream_of_or_within ISO (PMID:12446740) MGI PMID:12446740 NCBI chrNW_004955492:4,502,705...4,573,126
Ensembl chrNW_004955492:4,502,897...4,558,697
JBrowse link
G Tnn tenascin N acts_upstream_of_or_within ISO (PMID:12812753) MGI PMID:12812753 NCBI chrNW_004955406:14,882,414...14,950,572
Ensembl chrNW_004955406:14,882,245...14,950,587
JBrowse link
G Top2b DNA topoisomerase II beta acts_upstream_of_or_within ISO (PMID:10615047) MGI PMID:10615047 NCBI chrNW_004955430:17,457,603...17,523,115
Ensembl chrNW_004955430:17,457,603...17,507,012
JBrowse link
G Trim46 tripartite motif containing 46 acts_upstream_of_or_within ISO (PMID:26671463) MGI PMID:26671463 NCBI chrNW_004955545:1,646,244...1,656,825
Ensembl chrNW_004955545:1,646,244...1,656,825
JBrowse link
G Uchl1 ubiquitin C-terminal hydrolase L1 acts_upstream_of_or_within ISO (PMID:1630580) MGI PMID:1630580 NCBI chrNW_004955443:6,367,519...6,379,638
Ensembl chrNW_004955443:6,367,460...6,380,462
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 acts_upstream_of_or_within ISO (PMID:15014045) MGI PMID:15014045 NCBI chrNW_004955482:760,200...777,133
Ensembl chrNW_004955482:761,811...777,133
JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO (PMID:11830579) MGI PMID:11830579 NCBI chrNW_004955424:14,283,336...14,309,809
Ensembl chrNW_004955424:14,283,327...14,309,809
JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:15454084) MGI PMID:15454084 NCBI chrNW_004955581:351,375...382,541
Ensembl chrNW_004955581:350,889...382,541
JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO (PMID:23517308) ParkinsonsUK-UCL PMID:23517308 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
G Zdhhc17 zinc finger DHHC-type palmitoyltransferase 17 involved_in ISO (PMID:26232532) UniProt PMID:26232532 NCBI chrNW_004955405:15,915,756...15,997,777
Ensembl chrNW_004955405:15,915,756...15,997,777
JBrowse link
axonogenesis involved in innervation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col25a1 collagen type XXV alpha 1 chain acts_upstream_of_or_within ISO (PMID:24453327) MGI PMID:24453327 NCBI chrNW_004955496:839,474...1,255,107
Ensembl chrNW_004955496:839,561...1,250,614
JBrowse link
G Ece1 endothelin converting enzyme 1 involved_in ISO (PMID:30735130) MGI PMID:30735130 NCBI chrNW_004955452:1,653,783...1,704,619
Ensembl chrNW_004955452:1,651,316...1,751,489
JBrowse link
G Edn1 endothelin 1 involved_in ISO (PMID:24875861)
(PMID:30735130)
MGI PMID:24875861 PMID:30735130 NCBI chrNW_004955465:2,287,906...2,314,945
Ensembl chrNW_004955465:2,287,798...2,314,753
JBrowse link
G Ednra endothelin receptor type A involved_in ISO (PMID:30735130)
(PMID:24875861)
MGI PMID:24875861 PMID:30735130 NCBI chrNW_004955428:3,062,303...3,114,761
Ensembl chrNW_004955428:3,062,303...3,114,761
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:17557302) MGI PMID:17557302 NCBI chrNW_004955514:1,030,244...1,038,590
Ensembl chrNW_004955514:1,025,600...1,038,590
JBrowse link
G Itga4 integrin subunit alpha 4 ISO RGD PMID:16181811 RGD:13593536 NCBI chrNW_004955403:15,726,296...15,807,055
Ensembl chrNW_004955403:15,723,785...15,807,111
JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in ISO (PMID:25473838) MGI PMID:25473838 NCBI chrNW_004955472:506,351...523,647
Ensembl chrNW_004955472:506,351...523,316
JBrowse link
G Nptx1 neuronal pentraxin 1 acts_upstream_of_or_within ISO (PMID:16763034) MGI PMID:16763034 NCBI chrNW_004955506:2,447,429...2,456,612
Ensembl chrNW_004955506:2,447,109...2,456,965
JBrowse link
G Nrp1 neuropilin 1 involved_in ISO (PMID:22790009) BHF-UCL PMID:22790009 NCBI chrNW_004955462:4,101,997...4,241,012
Ensembl chrNW_004955462:4,101,999...4,241,012
JBrowse link
G Ntrk1 neurotrophic receptor tyrosine kinase 1 involved_in ISO (PMID:8815902) UniProt PMID:8815902 NCBI chrNW_004955545:2,929,704...2,947,579
Ensembl chrNW_004955545:2,929,704...2,947,579
JBrowse link
G Sema3a semaphorin 3A involved_in ISO (PMID:22790009) BHF-UCL PMID:22790009 NCBI chrNW_004955410:2,146,088...2,344,342
Ensembl chrNW_004955410:2,144,388...2,338,973
JBrowse link
basal dendrite arborization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (PMID:22683681) ARUK-UCL PMID:22683681 NCBI chrNW_004955462:4,101,997...4,241,012
Ensembl chrNW_004955462:4,101,999...4,241,012
JBrowse link
G Sema3a semaphorin 3A involved_in ISO (PMID:22683681) ARUK-UCL PMID:22683681 NCBI chrNW_004955410:2,146,088...2,344,342
Ensembl chrNW_004955410:2,144,388...2,338,973
JBrowse link
G Taok2 TAO kinase 2 involved_in ISO PMID:22683681
(PMID:22683681)
ARUK-UCL PMID:22683681 RGD:13461760 NCBI chrNW_004955493:6,968,537...6,986,608
Ensembl chrNW_004955493:6,969,096...6,985,878
JBrowse link
basal dendrite development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (PMID:22683681) ARUK-UCL PMID:22683681 NCBI chrNW_004955462:4,101,997...4,241,012
Ensembl chrNW_004955462:4,101,999...4,241,012
JBrowse link
basal dendrite morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Taok2 TAO kinase 2 involved_in ISO PMID:22683681
(PMID:22683681)
ARUK-UCL PMID:22683681 RGD:13461760 NCBI chrNW_004955493:6,968,537...6,986,608
Ensembl chrNW_004955493:6,969,096...6,985,878
JBrowse link
Bergmann glial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (PMID:20980600) MGI PMID:20980600 NCBI chrNW_004955513:652,048...799,182
Ensembl chrNW_004955513:653,252...799,239
JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (PMID:20980600) MGI PMID:20980600 NCBI chrNW_004955406:18,435,984...18,527,967
Ensembl chrNW_004955406:18,437,672...18,527,698
JBrowse link
G Gfap glial fibrillary acidic protein acts_upstream_of_or_within ISO (PMID:10816608) MGI PMID:10816608 NCBI chrNW_004955451:17,695,835...17,703,894
Ensembl chrNW_004955451:17,695,835...17,703,268
JBrowse link
G Gpr37l1 G protein-coupled receptor 37 like 1 acts_upstream_of ISO (PMID:24062445) MGI PMID:24062445 NCBI chrNW_004955406:38,214,490...38,223,281
Ensembl chrNW_004955406:38,214,423...38,223,281
JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 acts_upstream_of_or_within ISO (PMID:24431450) MGI PMID:24431450 NCBI chrNW_004955450:9,181,851...9,205,277
Ensembl chrNW_004955450:9,181,851...9,239,648
JBrowse link
G Mapk1 mitogen-activated protein kinase 1 acts_upstream_of_or_within ISO (PMID:24431450) MGI PMID:24431450 NCBI chrNW_004955442:17,284,232...17,380,026
Ensembl chrNW_004955442:17,284,232...17,380,020
JBrowse link
G Mapk3 mitogen-activated protein kinase 3 acts_upstream_of_or_within ISO (PMID:24431450) MGI PMID:24431450 NCBI chrNW_004955493:6,870,699...6,876,836
Ensembl chrNW_004955493:6,869,668...6,879,152
JBrowse link
G Plpp3 phospholipid phosphatase 3 acts_upstream_of_or_within ISO (PMID:21319224) MGI PMID:21319224 NCBI chrNW_004955464:3,122,420...3,197,359
Ensembl chrNW_004955464:3,081,334...3,197,413
JBrowse link
G Ptpn11 protein tyrosine phosphatase non-receptor type 11 acts_upstream_of_or_within ISO (PMID:24431450) MGI PMID:24431450 NCBI chrNW_004955482:8,934,734...9,031,230
Ensembl chrNW_004955482:8,934,306...9,035,203
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:10375501) MGI PMID:10375501 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within ISO (PMID:29615573) MGI PMID:29615573 NCBI chrNW_004955449:8,242,327...8,306,012
Ensembl chrNW_004955449:8,241,990...8,308,562
JBrowse link
G Vim vimentin acts_upstream_of_or_within ISO (PMID:10816608) MGI PMID:10816608 NCBI chrNW_004955429:10,708,852...10,716,743
Ensembl chrNW_004955429:10,707,719...10,717,554
JBrowse link
branchiomotor neuron axon guidance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mycbp2 MYC binding protein 2 acts_upstream_of_or_within ISO (PMID:18031680) MGI PMID:18031680 NCBI chrNW_004955404:29,932,125...30,186,236
Ensembl chrNW_004955404:29,932,125...30,186,236
JBrowse link
G Nrp1 neuropilin 1 involved_in ISO (PMID:18804103) ParkinsonsUK-UCL PMID:18804103 NCBI chrNW_004955462:4,101,997...4,241,012
Ensembl chrNW_004955462:4,101,999...4,241,012
JBrowse link
G Plxna3 plexin A3 involved_in ISO (PMID:18804103) ParkinsonsUK-UCL PMID:18804103 NCBI chrNW_004955580:958,033...972,123
Ensembl chrNW_004955580:957,860...972,772
JBrowse link
G Plxna4 plexin A4 involved_in ISO (PMID:18804103) ParkinsonsUK-UCL PMID:18804103 NCBI chrNW_004955410:35,281,042...35,714,094
Ensembl chrNW_004955410:35,281,648...35,713,453
JBrowse link
G Sema3a semaphorin 3A involved_in ISO (PMID:18804103) ParkinsonsUK-UCL PMID:18804103 NCBI chrNW_004955410:2,146,088...2,344,342
Ensembl chrNW_004955410:2,144,388...2,338,973
JBrowse link
G Sema3f semaphorin 3F involved_in ISO (PMID:18804103) ParkinsonsUK-UCL PMID:18804103 NCBI chrNW_004955532:1,992,417...2,015,879
Ensembl chrNW_004955532:1,988,486...2,017,170
JBrowse link
Cajal-Retzius cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of ISO (PMID:18579678) MGI PMID:18579678 NCBI chrNW_004955420:14,565,921...14,568,447
Ensembl chrNW_004955420:14,564,283...14,568,447
JBrowse link
G Neurog2 neurogenin 2 acts_upstream_of ISO (PMID:18579678) MGI PMID:18579678 NCBI chrNW_004955457:14,268,078...14,287,050 JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:15548218) MGI PMID:15548218 NCBI chrNW_004955523:2,128,529...2,210,737
Ensembl chrNW_004955523:2,128,529...2,210,737
JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prom1 prominin 1 involved_in ISO (PMID:18654668)
(PMID:19228982)
BHF-UCL
UniProt
PMID:18654668 PMID:19228982 NCBI chrNW_004955480:7,955,501...8,059,537
Ensembl chrNW_004955480:7,961,389...8,059,589
JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (PMID:20300562) MGI PMID:20300562 NCBI chrNW_004955599:578,165...580,055
Ensembl chrNW_004955599:573,426...579,812
JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO (PMID:26287463) UniProt PMID:26287463 NCBI chrNW_004955553:353,190...614,806
Ensembl chrNW_004955553:357,112...614,811
JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (PMID:12808454) MGI PMID:12808454 NCBI chrNW_004955430:18,991,615...19,059,590
Ensembl chrNW_004955430:18,991,301...19,067,754
JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO (PMID:21646512) MGI PMID:21646512 NCBI chrNW_004955438:11,410,196...11,466,044
Ensembl chrNW_004955438:11,409,982...11,466,523
JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:18582859) MGI PMID:18582859 NCBI chrNW_004955453:14,376,665...14,382,536
Ensembl chrNW_004955453:14,376,718...14,381,747
JBrowse link
cardiac neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vcam1 vascular cell adhesion molecule 1 ISO RGD PMID:12486170 RGD:628409 NCBI chrNW_004955435:5,390,745...5,410,025
Ensembl chrNW_004955435:5,390,751...5,411,691
JBrowse link
carotid body glomus cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:15878769) MGI PMID:15878769 NCBI chrNW_004955405:37,941,243...37,943,641
Ensembl chrNW_004955405:37,941,243...37,943,641
JBrowse link
cell morphogenesis involved in neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fat3 FAT atypical cadherin 3 acts_upstream_of_or_within ISO (PMID:21903076) MGI PMID:21903076 NCBI chrNW_004955414:1,467,087...2,083,914
Ensembl chrNW_004955414:1,472,067...1,962,265
JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within ISO (PMID:16691564) MGI PMID:16691564 NCBI chrNW_004955409:31,672,960...31,674,970 JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:11500373) MGI PMID:11500373 NCBI chrNW_004955420:14,565,921...14,568,447
Ensembl chrNW_004955420:14,564,283...14,568,447
JBrowse link
G Hexa hexosaminidase subunit alpha acts_upstream_of_or_within ISO (PMID:14972652) MGI PMID:14972652 NCBI chrNW_004955450:4,790,342...4,806,862
Ensembl chrNW_004955450:4,790,268...4,806,734
JBrowse link
G Id2 inhibitor of DNA binding 2 acts_upstream_of_or_within ISO (PMID:23264561) MGI PMID:23264561 NCBI chrNW_004955487:878,326...880,783
Ensembl chrNW_004955487:878,326...880,783
JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISO (PMID:18599437) Alzheimers_University_of_Toronto PMID:18599437 NCBI chrNW_004955418:22,537,388...22,701,434
Ensembl chrNW_004955418:22,537,285...22,701,434
JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (PMID:10482234) MGI PMID:10482234 NCBI chrNW_004955579:51,862...74,985 JBrowse link
G Mycbp2 MYC binding protein 2 acts_upstream_of_or_within ISO (PMID:18031680) MGI PMID:18031680 NCBI chrNW_004955404:29,932,125...30,186,236
Ensembl chrNW_004955404:29,932,125...30,186,236
JBrowse link
G Ophn1 oligophrenin 1 involved_in ISO (PMID:27160703) ARUK-UCL PMID:27160703 NCBI chrNW_004955475:7,576,629...8,019,132
Ensembl chrNW_004955475:7,581,675...8,018,139
JBrowse link
G Rb1 RB transcriptional corepressor 1 acts_upstream_of_or_within ISO (PMID:7958874) MGI PMID:7958874 NCBI chrNW_004955431:1,960,765...2,124,576
Ensembl chrNW_004955431:1,960,661...2,124,576
JBrowse link
G Slc1a3 solute carrier family 1 member 3 acts_upstream_of_or_within ISO (PMID:9753165) MGI PMID:9753165 NCBI chrNW_004955426:21,371,985...21,450,749
Ensembl chrNW_004955426:21,371,985...21,451,069
JBrowse link
G Spr sepiapterin reductase acts_upstream_of_or_within ISO (PMID:16532389) MGI PMID:16532389 NCBI chrNW_004955424:12,711,064...12,716,000
Ensembl chrNW_004955424:12,711,064...12,716,000
JBrowse link
G Tbcd tubulin folding cofactor D involved_in ISO (PMID:27666374) UniProt PMID:27666374 NCBI chrNW_004955506:273,769...434,205
Ensembl chrNW_004955506:273,954...434,973
JBrowse link
G Unk unk zinc finger involved_in ISO (PMID:25737280) UniProt PMID:25737280 NCBI chrNW_004955506:6,424,638...6,470,406
Ensembl chrNW_004955506:6,424,638...6,470,874
JBrowse link
cell motility involved in cerebral cortex radial glia guided migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmerb1 bMERB domain containing 1 acts_upstream_of ISO (PMID:25099998) MGI PMID:25099998 NCBI chrNW_004955442:317,334...442,514
Ensembl chrNW_004955442:314,486...442,088
JBrowse link
G Dab2ip DAB2 interacting protein involved_in ISO (PMID:23056358) UniProt PMID:23056358 NCBI chrNW_004955419:6,229,437...6,416,619
Ensembl chrNW_004955419:6,228,591...6,416,402
JBrowse link
cell-cell adhesion involved in neuronal-glial interactions involved in cerebral cortex radial glia guided migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab1 DAB adaptor protein 1 acts_upstream_of_or_within ISO (PMID:15091337) MGI PMID:15091337 NCBI chrNW_004955464:2,325,529...2,721,497
Ensembl chrNW_004955464:2,455,346...2,724,358
JBrowse link
central nervous system interneuron axonogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tctn1 tectonic family member 1 acts_upstream_of_or_within ISO (PMID:16357211) MGI PMID:16357211 NCBI chrNW_004955482:7,504,554...7,533,605
Ensembl chrNW_004955482:7,504,532...7,528,542
JBrowse link
central nervous system myelin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca2 ATP binding cassette subfamily A member 2 involved_in
acts_upstream_of_or_within
ISO PMID:12210128
(PMID:17060448)
UniProt
ARUK-UCL
PMID:12210128 PMID:17060448 RGD:631995 NCBI chrNW_004955513:5,035,879...5,051,140
Ensembl chrNW_004955513:5,033,771...5,051,200
JBrowse link
G Ckap5 cytoskeleton associated protein 5 acts_upstream_of_or_within ISO (PMID:28063167) MGI PMID:28063167 NCBI chrNW_004955422:1,266,686...1,354,323
Ensembl chrNW_004955422:1,279,158...1,353,894
JBrowse link
G Cntn1 contactin 1 involved_in ISO (PMID:31641127) MGI PMID:31641127 NCBI chrNW_004955500:154,704...540,546
Ensembl chrNW_004955500:245,896...540,600
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:17952069) MGI PMID:17952069 NCBI chrNW_004955555:2,355,005...2,369,599
Ensembl chrNW_004955555:2,355,005...2,369,599
JBrowse link
G Mag myelin associated glycoprotein involved_in ISO (PMID:31641127) MGI PMID:31641127 NCBI chrNW_004955468:4,584,068...4,598,772
Ensembl chrNW_004955468:4,584,162...4,598,914
JBrowse link
G Mios meiosis regulator for oocyte development involved_in ISO (PMID:35022234) UniProt PMID:35022234 NCBI chrNW_004955432:14,658,624...14,693,116
Ensembl chrNW_004955432:14,657,973...14,693,116
JBrowse link
G Mobp myelin associated oligodendrocyte basic protein ISO RGD PMID:9306245 RGD:27226697 NCBI chrNW_004955420:29,902,036...29,957,364 JBrowse link
G Tenm4 teneurin transmembrane protein 4 involved_in ISO (PMID:26188006)
(PMID:22915103)
UniProt PMID:22915103 PMID:26188006 NCBI chrNW_004955414:12,649,128...13,364,523
Ensembl chrNW_004955414:12,867,974...13,364,580
JBrowse link
G Tlr2 toll like receptor 2 ISO RGD PMID:21971760 RGD:7241097 NCBI chrNW_004955471:8,011,710...8,019,063
Ensembl chrNW_004955471:8,014,910...8,017,258
JBrowse link
central nervous system myelin maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clu clusterin involved_in ISO (PMID:21543606) Alzheimers_University_of_Toronto PMID:21543606 NCBI chrNW_004955403:50,160,598...50,175,876
Ensembl chrNW_004955403:50,160,598...50,175,876
JBrowse link
G Fa2h fatty acid 2-hydroxylase acts_upstream_of_or_within ISO (PMID:21491498)
(PMID:18815260)
MGI PMID:18815260 PMID:21491498 NCBI chrNW_004955484:2,726,496...2,775,763
Ensembl chrNW_004955484:2,726,362...2,775,903
JBrowse link
G Myrf myelin regulatory factor involved_in ISO (PMID:22956843) UniProt PMID:22956843 NCBI chrNW_004955511:5,927,103...5,949,289
Ensembl chrNW_004955511:5,927,698...5,942,242
JBrowse link
G Pten phosphatase and tensin homolog involved_in ISO (PMID:18082964) CACAO PMID:18082964 NCBI chrNW_004955425:5,007,811...5,091,829
Ensembl chrNW_004955425:5,014,147...5,091,829
JBrowse link
central nervous system myelination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aspa aspartoacylase ISO RGD PMID:12524181 RGD:632029 NCBI chrNW_004955467:13,277,014...13,332,658
Ensembl chrNW_004955467:13,280,254...13,316,114
JBrowse link
G B4galt5 beta-1,4-galactosyltransferase 5 involved_in ISO (PMID:30114188) UniProt PMID:30114188 NCBI chrNW_004955445:8,471,684...8,559,672
Ensembl chrNW_004955445:8,534,220...8,559,672
JBrowse link
G B4galt6 beta-1,4-galactosyltransferase 6 involved_in ISO (PMID:30114188) UniProt