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ONTOLOGY REPORT - ANNOTATIONS

Term:central nervous system neuron differentiation
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Accession:GO:0021953 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the central nervous system.


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central nervous system neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apbb1 amyloid beta precursor protein binding family B member 1 acts_upstream_of ISO MGI:3514266 (PMID:18278038) RGD PMID:18278038 NCBI chr 1:169,308,719...169,332,372
Ensembl chr 1:159,896,880...159,920,627 		JBrowse link
G App amyloid beta precursor protein acts_upstream_of ISO MGI:104518 (PMID:18278038) RGD PMID:18278038 NCBI chr11:37,506,207...37,724,351
Ensembl chr11:24,019,778...24,236,561 		JBrowse link
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:2155983 (PMID:14999071) RGD PMID:14999071 NCBI chr 4:95,241,933...95,244,028
Ensembl chr 4:93,912,068...93,914,154 		JBrowse link
G Bcl11b BCL11 transcription factor B acts_upstream_of_or_within ISO MGI:1352456 (PMID:18215621) RGD PMID:18215621 NCBI chr 6:132,598,968...132,692,123
Ensembl chr 6:126,834,531...126,928,224 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO MGI:107191 (PMID:15469980) RGD PMID:15469980 NCBI chr16:9,740,751...9,786,861
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO MGI:1338938 (PMID:15469980) RGD PMID:15469980 NCBI chr 2:233,211,525...233,544,344
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Brinp1 BMP/retinoic acid inducible neural specific 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:87,363,621...87,565,580
Ensembl chr 5:82,348,930...82,493,150 		JBrowse link
G Brinp2 BMP/retinoic acid inducible neural specific 2 involved_in IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
(PMID:20025061)		 Ensembl
GO_Central
RGD		 PMID:20025061 GO_REF:0000033 GO_REF:0000107 NCBI chr13:72,964,498...73,065,312
Ensembl chr13:70,431,010...70,531,810 		JBrowse link
G Brinp3 BMP/retinoic acid inducible neural specific 3 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:20025061)		 UniProt
GO_Central
RGD		 PMID:20025061 GO_REF:0000024 GO_REF:0000033 NCBI chr13:60,964,127...61,397,044
Ensembl chr13:58,413,883...58,846,770 		JBrowse link
G Brsk1 BR serine/threonine kinase 1 acts_upstream_of_or_within ISO MGI:1923020 (PMID:15705853) RGD PMID:15705853 NCBI chr 1:78,162,944...78,193,598
Ensembl chr 1:69,134,565...69,160,365 		JBrowse link
G Brsk2 BR serine/threonine kinase 2 acts_upstream_of_or_within ISO MGI:2685946 (PMID:15705853) RGD PMID:15705853 NCBI chr 1:206,465,040...206,518,156
Ensembl chr 1:197,035,633...197,088,092 		JBrowse link
G Cacna1a calcium voltage-gated channel subunit alpha1 A acts_upstream_of_or_within ISO MGI:1856209 (PMID:6945603) RGD PMID:6945603 NCBI chr19:40,425,560...40,724,810
Ensembl chr19:23,520,741...23,823,225 		JBrowse link
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of ISO MGI:2653120 (PMID:19244314) RGD PMID:19244314 NCBI chr 8:42,032,921...42,119,451
Ensembl chr 8:33,806,183...33,859,033 		JBrowse link
G Cntn2 contactin 2 acts_upstream_of ISO MGI:88059 (PMID:18278038) RGD PMID:18278038 NCBI chr13:46,497,269...46,528,112
Ensembl chr13:43,947,265...43,975,887 		JBrowse link
G Dab1 DAB adaptor protein 1 acts_upstream_of ISO MGI:1857750 (PMID:18848628) RGD PMID:18848628 NCBI chr 5:123,621,510...124,742,585
Ensembl chr 5:119,140,533...119,510,552 		JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within ISO MGI:3578144 (PMID:21552265) RGD PMID:21552265 NCBI chr 8:12,473,955...12,697,075
Ensembl chr 8:4,189,257...4,412,183 		JBrowse link
G Efna1 ephrin A1 acts_upstream_of_or_within ISO (PMID:15145949) RGD PMID:15145949 NCBI chr 2:176,979,434...176,988,675
Ensembl chr 2:174,681,682...174,690,866 		JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO MGI:95390 (PMID:15340832) RGD PMID:15340832 NCBI chr13:34,303,684...34,309,269
Ensembl chr13:31,751,545...31,755,943 		JBrowse link
G En2 engrailed homeobox 2 acts_upstream_of_or_within ISO MGI:95389 (PMID:15340832) RGD PMID:15340832 NCBI chr 4:7,954,953...7,960,793
Ensembl chr 4:7,221,096...7,226,943 		JBrowse link
G Epha2 Eph receptor A2 acts_upstream_of_or_within ISO (PMID:15145949) RGD PMID:15145949 NCBI chr 5:158,888,629...158,917,100
Ensembl chr 5:153,605,644...153,634,117 		JBrowse link
G Fezf1 Fez family zinc finger 1 acts_upstream_of ISO MGI:1859823 (PMID:20431123) RGD PMID:20431123 NCBI chr 4:52,728,385...52,733,315
Ensembl chr 4:51,762,751...51,766,078 		JBrowse link
G Fezf2 Fez family zinc finger 2 acts_upstream_of ISO MGI:104876|MGI:1920441 (PMID:20431123) RGD PMID:20431123 NCBI chr15:15,199,045...15,207,982
Ensembl chr15:12,773,762...12,777,554 		JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of ISO MGI:1857771|MGI:1932522 (PMID:14704420), (PMID:7605629) RGD PMID:7605629 PMID:14704420 NCBI chr 6:72,401,582...72,404,392
Ensembl chr 6:66,666,587...66,678,607 		JBrowse link
G Gata2 GATA binding protein 2 acts_upstream_of_or_within ISO MGI:1857743 (PMID:10357893) RGD PMID:10357893 NCBI chr 4:122,211,501...122,225,058
Ensembl chr 4:120,658,986...120,667,761 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of ISO MGI:1856276 (PMID:19048639) RGD PMID:19048639 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of ISO MGI:104876|MGI:2149672 (PMID:15496443), (PMID:16038893) RGD PMID:15496443 PMID:16038893 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 acts_upstream_of ISO MGI:104853|MGI:1859823|MGI:1920441 (PMID:15496443), (PMID:20431123) RGD PMID:15496443 PMID:20431123 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:165,522,234...165,523,001 		JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:1857504 (PMID:9806922) RGD PMID:9806922 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
G Id4 inhibitor of DNA binding 4 acts_upstream_of ISO MGI:3579084 (PMID:15882580) RGD PMID:15882580 NCBI chr17:16,595,724...16,598,293
Ensembl chr17:16,389,387...16,392,470 		JBrowse link
G Itgb1 integrin subunit beta 1 acts_upstream_of ISO MGI:2156945 (PMID:15056720) RGD PMID:15056720 NCBI chr19:73,602,277...73,650,271
Ensembl chr19:56,705,171...56,753,195 		JBrowse link
G Lmx1a LIM homeobox transcription factor 1 alpha acts_upstream_of
acts_upstream_of_or_within		 ISO MGI:1888413 (PMID:15148302)
MGI:1888413 (PMID:15183721), (PMID:17670789)		 RGD PMID:15148302 PMID:15183721 PMID:17670789 NCBI chr13:82,367,493...82,511,157
Ensembl chr13:79,835,019...79,978,253 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO MGI:2158463 (PMID:15229182) RGD PMID:15229182 NCBI chr 3:37,257,025...37,338,675
Ensembl chr 3:16,862,195...16,940,899 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 acts_upstream_of_or_within ISO (PMID:15145949) RGD PMID:15145949 NCBI chr 8:73,578,747...73,650,184
Ensembl chr 8:64,683,449...64,755,147 		JBrowse link
G Met MET proto-oncogene, receptor tyrosine kinase IEP RGD PMID:18262389 RGD:2317458 NCBI chr 4:46,756,823...46,864,041
Ensembl chr 4:45,790,791...45,897,876 		JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of ISO MGI:3603514 (PMID:16000382) RGD PMID:16000382 NCBI chr18:2,075,309...2,199,774
Ensembl chr18:1,802,519...1,920,689 		JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO MGI:2182358|MGI:2182361|MGI:2182363 (PMID:10482234) RGD PMID:10482234 NCBI chr 4:6,541,645...6,546,604
Ensembl chr 4:5,866,506...5,871,465 		JBrowse link
G Nkx2-2 NK2 homeobox 2 acts_upstream_of ISO MGI:1932100 (PMID:10217145), (PMID:10830170) RGD PMID:10217145 PMID:10830170 NCBI chr 3:155,072,621...155,083,699
Ensembl chr 3:134,620,039...134,622,411 		JBrowse link
G Nkx6-1 NK6 homeobox 1 acts_upstream_of_or_within ISO MGI:2386119 (PMID:19592574)
(PMID:10830170)		 RGD PMID:10830170 PMID:19592574 NCBI chr14:8,274,238...8,281,171
Ensembl chr14:7,969,756...7,976,681 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of ISO MGI:1932522|MGI:1933835 (PMID:16120638) RGD PMID:16120638 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of ISO MGI:2151350|MGI:2176560 (PMID:12527005), (PMID:14702088), (PMID:17901127) RGD PMID:12527005 PMID:14702088 PMID:17901127 NCBI chr20:47,632,347...47,653,464
Ensembl chr20:46,050,414...46,073,949 		JBrowse link
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:2429971|MGI:3043985 (PMID:11113533), (PMID:14622207), (PMID:9520484)		 GO_Central
RGD		 PMID:9520484 PMID:11113533 PMID:14622207 GO_REF:0000033 NCBI chr 3:62,098,739...62,115,926
Ensembl chr 3:41,689,851...41,697,877 		JBrowse link
G Olig2 oligodendrocyte transcription factor 2 acts_upstream_of ISO (PMID:11566099) RGD PMID:11566099 NCBI chr11:43,961,585...43,964,961
Ensembl chr11:30,475,398...30,480,152 		JBrowse link
G Pou3f2 POU class 3 homeobox 2 acts_upstream_of_or_within ISO (PMID:17141158) RGD PMID:17141158 NCBI chr 5:40,874,631...40,880,539
Ensembl chr 5:36,077,930...36,083,838 		JBrowse link
G Pou4f1 POU class 4 homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2387665|MGI:3512302 (PMID:8876243), (PMID:8955272)		 Ensembl
RGD		 PMID:8876243 PMID:8955272 GO_REF:0000107 NCBI chr15:87,668,328...87,674,643
Ensembl chr15:81,257,781...81,259,728 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a acts_upstream_of_or_within ISO MGI:3701996 (PMID:17301087) RGD PMID:17301087 NCBI chr17:86,959,621...86,961,475
Ensembl chr17:82,051,281...82,053,135 		JBrowse link
G Runx1 RUNX family transcription factor 1 acts_upstream_of_or_within ISO MGI:2668479 (PMID:15240886) RGD PMID:15240886 NCBI chr11:45,325,778...45,560,300
Ensembl chr11:31,843,764...32,074,542 		JBrowse link
G Sall1 spalt-like transcription factor 1 acts_upstream_of ISO MGI:2388379 (PMID:18024993) RGD PMID:18024993 NCBI chr19:34,179,316...34,196,278
Ensembl chr19:18,007,503...18,022,705 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2176256|MGI:2446434 (PMID:16571630)		 Ensembl
RGD		 PMID:16571630 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Sox5 SRY-box transcription factor 5 acts_upstream_of_or_within ISO MGI:1929913 (PMID:18215621) RGD PMID:18215621 NCBI chr 4:178,512,272...179,467,686
Ensembl chr 4:176,785,892...177,736,852 		JBrowse link
G Spock1 sparc/osteonectin, cwcv and kazal like domains proteoglycan 1 involved_in ISO (PMID:10640720) RGD PMID:10640720 NCBI chr17:6,746,892...7,227,034
Ensembl chr17:6,742,273...7,224,935 		JBrowse link
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor acts_upstream_of_or_within ISO MGI:2176173|MGI:2661471 (PMID:16292311) RGD PMID:16292311 NCBI chr 5:133,823,093...133,837,737
Ensembl chr 5:128,587,701...128,600,976 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO MGI:2388066 (PMID:19286674) RGD PMID:19286674 NCBI chr 4:163,276,583...163,318,297
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within ISO MGI:1856112 (PMID:8630490) RGD PMID:8630490 NCBI chr 6:109,932,943...109,972,005
Ensembl chr 6:104,217,230...104,240,018 		JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 acts_upstream_of ISO (PMID:19515908) RGD PMID:19515908 NCBI chr 7:91,115,894...91,263,823
Ensembl chr 7:89,226,463...89,374,378 		JBrowse link
amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Barhl2 BarH-like homeobox 2 acts_upstream_of_or_within ISO (PMID:14998930) RGD PMID:14998930 NCBI chr14:3,485,309...3,490,206
Ensembl chr14:3,340,465...3,345,353 		JBrowse link
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (PMID:17092954) RGD PMID:17092954 NCBI chr 2:102,402,622...102,405,732
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Foxn4 forkhead box N4 acts_upstream_of_or_within
involved_in		 ISO MGI:3054789 (PMID:15363391) RGD PMID:15363391 NCBI chr12:47,997,308...48,020,526
Ensembl chr12:42,340,323...42,359,921 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of ISO (PMID:15976303) RGD PMID:15976303 NCBI chr 7:1,896,229...1,909,147
Ensembl chr 7:1,311,732...1,320,725 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of		 IEA
ISO		 GO_REF:0000107
MGI:2149672 (PMID:16038893)		 Ensembl
RGD		 PMID:16038893 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) RGD PMID:25654255 NCBI chr14:90,468,696...90,556,522
Ensembl chr14:86,255,065...86,342,416 		JBrowse link
G Miat myocardial infarction associated transcript acts_upstream_of_or_within ISO (PMID:20459797) RGD PMID:20459797 NCBI chr12:50,075,026...50,090,259 JBrowse link
G Neurod1 neuronal differentiation 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:11861467)		 UniProt
RGD		 PMID:11861467 GO_REF:0000024 NCBI chr 3:84,766,483...84,770,454
Ensembl chr 3:64,359,395...64,363,649 		JBrowse link
G Neurod4 neuronal differentiation 4 involved_in ISO (PMID:11861467) RGD PMID:11861467 NCBI chr 7:7,740,852...7,828,052
Ensembl chr 7:7,090,045...7,102,030 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(PMID:17075007)
MGI:3701996 (PMID:17301087)		 UniProt
RGD		 PMID:17075007 PMID:17301087 GO_REF:0000024 NCBI chr17:86,959,621...86,961,475
Ensembl chr17:82,051,281...82,053,135 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO		 GO_REF:0000024
(PMID:23652001)		 UniProt
RGD		 PMID:23652001 GO_REF:0000024 NCBI chr 1:225,790,216...225,970,973
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of ISO (PMID:18973577) RGD PMID:18973577 NCBI chr 9:118,194,735...118,204,354
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of ISO (PMID:18926818) RGD PMID:18926818 NCBI chr 3:165,791,101...165,808,669
Ensembl chr 3:145,333,418...145,348,596
Ensembl chr17:145,333,418...145,348,596 		JBrowse link
anterior commissure morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:4440742 (PMID:22284184) RGD PMID:22284184 NCBI chr 2:102,402,622...102,405,732
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Draxin dorsal inhibitory axon guidance protein involved_in ISO (PMID:23206892) RGD PMID:23206892 NCBI chr 5:163,813,308...163,846,609
Ensembl chr 5:158,530,342...158,564,483 		JBrowse link
G Fbxo45 F-box protein 45 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3849742 (PMID:19398581)		 Ensembl
RGD		 PMID:19398581 GO_REF:0000107 NCBI chr11:82,056,457...82,072,080
Ensembl chr11:68,551,122...68,566,800 		JBrowse link
G Nfib nuclear factor I/B involved_in ISS
ISO		 GO_REF:0000024
(PMID:19961580)		 UniProt
RGD		 PMID:19961580 GO_REF:0000024 NCBI chr 5:101,805,168...102,020,618
Ensembl chr 5:96,764,653...96,975,479 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO MGI:2176490 (PMID:11997145) RGD PMID:11997145 NCBI chr20:47,632,347...47,653,464
Ensembl chr20:46,050,414...46,073,949 		JBrowse link
G Plxna4 plexin A4 acts_upstream_of_or_within ISO MGI:3578655 (PMID:15814794) RGD PMID:15814794 NCBI chr 4:61,687,483...62,129,467
Ensembl chr 4:60,720,255...61,162,206 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 GO_REF:0000107
(PMID:23206892)
MGI:4867728 (PMID:21055390)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:21055390 PMID:23206892 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:162,071,459...162,082,972
Ensembl chr 1:152,656,693...152,672,588 		JBrowse link
G Wdr47 WD repeat domain 47 acts_upstream_of_or_within ISO MGI:4433065|MGI:6102912 (PMID:29078390) RGD PMID:29078390 NCBI chr 2:198,914,977...198,975,844
Ensembl chr 2:196,205,238...196,287,739 		JBrowse link
Cajal-Retzius cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of		 IEA
ISO		 GO_REF:0000107
MGI:104876 (PMID:18579678)		 Ensembl
RGD		 PMID:18579678 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Neurog2 neurogenin 2 acts_upstream_of ISO (PMID:18579678) RGD PMID:18579678 NCBI chr 2:218,767,205...218,769,772
Ensembl chr 2:216,093,363...216,094,154 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO MGI:2149116 (PMID:15548218) RGD PMID:15548218 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
central nervous system interneuron axonogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tctn1 tectonic family member 1 acts_upstream_of_or_within ISO MGI:3716885 (PMID:16357211) RGD PMID:16357211 NCBI chr12:39,970,554...40,003,727
Ensembl chr12:34,309,897...34,342,267 		JBrowse link
central nervous system neuron axonogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgap35 Rho GTPase activating protein 35 involved_in ISS
ISO		 GO_REF:0000024
(PMID:11283609)		 UniProt
RGD		 PMID:11283609 GO_REF:0000024 NCBI chr 1:86,330,566...86,447,414
Ensembl chr 1:77,202,436...77,319,298 		JBrowse link
G Arhgef28 Rho guanine nucleotide exchange factor 28 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:15378065)		 Ensembl
RGD		 PMID:15378065 GO_REF:0000107 NCBI chr 2:30,998,292...31,294,757
Ensembl chr 2:29,263,886...29,560,672 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO MGI:3587769 (PMID:20577052) RGD PMID:20577052 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:147,718,752...147,925,593 		JBrowse link
G B4galt5 beta-1,4-galactosyltransferase 5 involved_in ISO (PMID:30114188) RGD PMID:30114188 NCBI chr 3:176,437,073...176,453,001
Ensembl chr 3:156,018,053...156,070,074 		JBrowse link
G B4galt6 beta-1,4-galactosyltransferase 6 involved_in ISS
ISO		 GO_REF:0000024
(PMID:30114188)		 UniProt
RGD		 PMID:30114188 GO_REF:0000024 NCBI chr18:12,233,350...12,290,204
Ensembl chr18:11,958,390...12,015,247 		JBrowse link
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit acts_upstream_of_or_within ISO MGI:2158714 (PMID:12097474) RGD PMID:12097474 NCBI chr 2:177,479,091...177,487,306
Ensembl chr 2:175,181,402...175,189,619 		JBrowse link
G Ndel1 nudE neurodevelopment protein 1-like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:15208636)		 Ensembl
RGD		 PMID:15208636 GO_REF:0000107 NCBI chr10:54,001,435...54,080,909
Ensembl chr10:53,516,491...53,570,907 		JBrowse link
G Prkca protein kinase C, alpha IMP RGD PMID:18062921 RGD:2293300 NCBI chr10:93,388,991...93,787,617
Ensembl chr10:92,894,012...93,288,012 		JBrowse link
G Pten phosphatase and tensin homolog involved_in ISO (PMID:16675393) RGD PMID:16675393 NCBI chr 1:240,043,707...240,110,330
Ensembl chr 1:230,630,338...230,696,838 		JBrowse link
G Ptk2 protein tyrosine kinase 2 acts_upstream_of_or_within ISO MGI:1857596 (PMID:15378065) RGD PMID:15378065 NCBI chr 7:107,015,730...107,220,865
Ensembl chr 7:105,126,728...105,331,783 		JBrowse link
central nervous system neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agbl4 AGBL carboxypeptidase 4 acts_upstream_of_or_within ISO MGI:1918244 (PMID:30420556) RGD PMID:30420556 NCBI chr 5:130,483,551...131,762,906
Ensembl chr 5:125,254,956...126,534,367 		JBrowse link
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 acts_upstream_of_or_within ISO MGI:1918244 (PMID:30420556) RGD PMID:30420556 NCBI chr17:5,092,108...5,244,414
Ensembl chr17:5,120,609...5,238,869 		JBrowse link
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:109619|MGI:1857470 (PMID:15169849), (PMID:16469766) RGD PMID:15169849 PMID:16469766 NCBI chr 7:23,790,642...23,793,509
Ensembl chr 7:21,903,126...21,905,993 		JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856098 (PMID:8174230) RGD PMID:8174230 NCBI chr  X:75,159,635...75,267,094
Ensembl chr  X:71,094,202...71,198,354 		JBrowse link
G Brinp1 BMP/retinoic acid inducible neural specific 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:20025061)		 Ensembl
RGD		 PMID:20025061 GO_REF:0000107 NCBI chr 5:87,363,621...87,565,580
Ensembl chr 5:82,348,930...82,493,150 		JBrowse link
G Btg2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO MGI:3525505 (PMID:20020054) RGD PMID:20020054 NCBI chr13:48,083,931...48,087,690
Ensembl chr13:45,531,925...45,535,628 		JBrowse link
G Cdk5 cyclin-dependent kinase 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1861809 (PMID:8855328)		 Ensembl
RGD		 PMID:8855328 GO_REF:0000107 NCBI chr 4:11,647,098...11,651,606
Ensembl chr 4:10,754,687...10,760,112 		JBrowse link
G Fgf8 fibroblast growth factor 8 IMP development of dopaminergic neurons in the midbrain and serotonergic neurons in the rostral hindbrain RGD PMID:9630220 RGD:2289424 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 IMP RGD PMID:17314281 RGD:2325182 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within ISO (PMID:16680166) RGD PMID:16680166 NCBI chr 6:72,401,582...72,404,392
Ensembl chr 6:66,666,587...66,678,607 		JBrowse link
G Gabrb1 gamma-aminobutyric acid type A receptor subunit beta1 IEP RGD PMID:15158077 RGD:6480239 NCBI chr14:36,434,339...36,917,920
Ensembl chr14:36,080,393...36,548,948 		JBrowse link
G Gata2 GATA binding protein 2 acts_upstream_of_or_within ISO MGI:1857743 (PMID:10357893) RGD PMID:10357893 NCBI chr 4:122,211,501...122,225,058
Ensembl chr 4:120,658,986...120,667,761 		JBrowse link
G Gba2 glucosylceramidase beta 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:23332916)		 UniProt
Ensembl
RGD		 PMID:23332916 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:62,618,176...62,630,160
Ensembl chr 5:57,822,389...57,834,072 		JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857299 (PMID:9886073)		 Ensembl
RGD		 PMID:9886073 GO_REF:0000107 NCBI chr  X:137,655,744...137,687,718
Ensembl chr  X:132,736,096...132,768,154 		JBrowse link
G Kiaa0319 KIAA0319 homolog acts_upstream_of_or_within ISO (PMID:35419947) RGD PMID:35419947 NCBI chr17:40,587,001...40,654,525
Ensembl chr17:40,165,084...40,225,653 		JBrowse link
G Lep leptin acts_upstream_of_or_within ISO MGI:1856424 (PMID:10592285) RGD PMID:10592285 NCBI chr 4:58,626,529...58,640,663
Ensembl chr 4:57,661,131...57,675,262 		JBrowse link
G Lingo1 leucine rich repeat and Ig domain containing 1 acts_upstream_of_or_within ISO MGI:3623893 (PMID:17726113) RGD PMID:17726113 NCBI chr 8:65,907,275...66,089,485
Ensembl chr 8:57,010,007...57,196,544 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO MGI:3696968|MGI:3696982 (PMID:17151281) RGD PMID:17151281 NCBI chr 3:37,257,025...37,338,675
Ensembl chr 3:16,862,195...16,940,899 		JBrowse link
G Map2 microtubule-associated protein 2 involved_in ISO
IEA		 (PMID:20846339)
GO_REF:0000107		 RGD
Ensembl		 PMID:20846339 GO_REF:0000107 NCBI chr 9:75,173,038...75,431,606
Ensembl chr 9:67,723,371...67,979,809 		JBrowse link
G Neurog2 neurogenin 2 acts_upstream_of_or_within ISO MGI:2159010|MGI:2159011|MGI:2673381|MGI:96919 (PMID:16410412) RGD PMID:16410412 NCBI chr 2:218,767,205...218,769,772
Ensembl chr 2:216,093,363...216,094,154 		JBrowse link
G Nova2 NOVA alternative splicing regulator 2 involved_in ISO (PMID:27223325) RGD PMID:27223325 NCBI chr 1:87,700,328...87,741,755
Ensembl chr 1:78,572,279...78,608,021 		JBrowse link
G Npy neuropeptide Y involved_in ISO
IEA		 (PMID:20846339)
GO_REF:0000107		 RGD
Ensembl		 PMID:20846339 GO_REF:0000107 NCBI chr 4:80,212,111...80,219,310
Ensembl chr 4:78,881,264...78,888,495 		JBrowse link
G Ntf3 neurotrophin 3 acts_upstream_of_or_within ISO MGI:2388319 (PMID:8809809) RGD PMID:8809809 NCBI chr 4:160,601,161...160,670,623
Ensembl chr 4:158,914,957...158,984,596 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:8402890)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:8402890 GO_REF:0000024 GO_REF:0000107 NCBI chr17:5,560,558...5,875,899
Ensembl chr17:5,559,043...5,869,136 		JBrowse link
G Pals1 protein associated with LIN7 1, MAGUK p55 family member involved_in ISS
ISO		 GO_REF:0000024
(PMID:20399730)		 UniProt
RGD		 PMID:20399730 GO_REF:0000024 NCBI chr 6:103,327,965...103,384,543
Ensembl chr 6:97,548,630...97,653,305 		JBrowse link
G Taok1 TAO kinase 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:33565190)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:33565190 GO_REF:0000024 GO_REF:0000107 NCBI chr10:62,871,198...62,989,049
Ensembl chr10:62,381,404...62,465,766 		JBrowse link
G Ttc36 tetratricopeptide repeat domain 36 acts_upstream_of_or_within ISO MGI:5588394 (PMID:31537781) RGD PMID:31537781 NCBI chr 8:54,009,522...54,013,129 JBrowse link
central nervous system projection neuron axonogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:2684610|MGI:4440742|MGI:4440744 (PMID:22284184) RGD PMID:22284184 NCBI chr 2:102,402,622...102,405,732
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit acts_upstream_of_or_within ISO MGI:1926253|MGI:2158714 (PMID:11344259), (PMID:14687550), (PMID:15608630) RGD PMID:11344259 PMID:14687550 PMID:15608630 NCBI chr 2:177,479,091...177,487,306
Ensembl chr 2:175,181,402...175,189,619 		JBrowse link
G Dclk1 doublecortin-like kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1277171 (PMID:16387638)		 Ensembl
RGD		 PMID:16387638 GO_REF:0000107 NCBI chr 2:141,567,215...141,861,088
Ensembl chr 2:139,417,163...139,710,956 		JBrowse link
G Dcx doublecortin involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1330861 (PMID:16387638)		 Ensembl
RGD		 PMID:16387638 GO_REF:0000107 NCBI chr  X:112,227,455...112,370,291
Ensembl chr  X:107,430,767...107,507,476 		JBrowse link
G Ephb1 Eph receptor B1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:2677305|MGI:2677312 (PMID:12971893)		 UniProt
RGD		 PMID:12971893 GO_REF:0000024 NCBI chr 8:111,386,432...111,823,759
Ensembl chr 8:102,507,549...102,944,839 		JBrowse link
G Ephb2 Eph receptor B2 acts_upstream_of_or_within ISO (PMID:12971893) RGD PMID:12971893 NCBI chr 5:154,179,065...154,360,459
Ensembl chr 5:148,897,246...149,077,059 		JBrowse link
G Ephb3 Eph receptor B3 acts_upstream_of_or_within ISO (PMID:12971893) RGD PMID:12971893 NCBI chr11:93,345,098...93,363,775
Ensembl chr11:79,840,668...79,859,370 		JBrowse link
G Kifbp kinesin family binding protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:31,055,625...31,075,232
Ensembl chr20:30,512,901...30,532,476 		JBrowse link
G Mycbp2 MYC binding protein 2 acts_upstream_of_or_within
involved_in		 ISO MGI:3777464|MGI:3777465 (PMID:18031680)
(PMID:17901218)		 RGD PMID:17901218 PMID:18031680 NCBI chr15:86,352,061...86,590,126
Ensembl chr15:79,937,354...80,175,498 		JBrowse link
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2157566 (PMID:10585298)		 Ensembl
RGD		 PMID:10585298 GO_REF:0000107 NCBI chr 3:62,098,739...62,115,926
Ensembl chr 3:41,689,851...41,697,877 		JBrowse link
G Prdm8 PR/SET domain 8 acts_upstream_of_or_within ISO MGI:5315763 (PMID:22284184) RGD PMID:22284184 NCBI chr14:11,708,477...11,728,111
Ensembl chr14:11,404,407...11,410,993 		JBrowse link
G Sptbn4 spectrin, beta, non-erythrocytic 4 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:3710201 (PMID:17197442)		 GO_Central
RGD		 PMID:17197442 GO_REF:0000033 NCBI chr 1:91,778,379...91,865,970
Ensembl chr 1:82,650,751...82,737,228 		JBrowse link
cerebellar granule cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1857876 (PMID:9668038) RGD PMID:9668038 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:146,896,332...147,140,665 		JBrowse link
G Cbln1 cerebellin 1 precursor involved_in ISS
ISO		 GO_REF:0000024
UniProtKB:Q61625 (PMID:20537373)		 BHF-UCL
RGD		 PMID:20537373 GO_REF:0000024 NCBI chr19:35,782,151...35,785,960
Ensembl chr19:19,608,716...19,612,572 		JBrowse link
G Grid2 glutamate ionotropic receptor delta type subunit 2 involved_in ISS
ISO		 GO_REF:0000024
UniProtKB:Q9R171 (PMID:20537373)		 BHF-UCL
RGD		 PMID:20537373 GO_REF:0000024 NCBI chr 4:93,745,165...95,222,354
Ensembl chr 4:92,415,230...93,889,355 		JBrowse link
G Kndc1 kinase non-catalytic C-lobe domain containing 1 acts_upstream_of_or_within ISO (PMID:17984326) RGD PMID:17984326 NCBI chr 1:204,119,597...204,167,967
Ensembl chr 1:194,690,135...194,738,362 		JBrowse link
G Mtpn myotrophin IEP RGD PMID:8144589 RGD:632797 NCBI chr 4:65,126,390...65,153,803
Ensembl chr 4:64,157,641...64,186,724 		JBrowse link
G Nfix nuclear factor I X involved_in
acts_upstream_of_or_within		 ISO MGI:3802571 (PMID:23042739)
MGI:3802571 (PMID:21800304)		 RGD PMID:21800304 PMID:23042739 NCBI chr19:40,259,873...40,356,966
Ensembl chr19:23,355,498...23,448,265 		JBrowse link
G Nrxn1 neurexin 1 involved_in ISS
ISO		 GO_REF:0000024
UniProtKB:Q61625|UniProtKB:Q9R171 (PMID:20537373)		 BHF-UCL
RGD		 PMID:20537373 GO_REF:0000024 NCBI chr 6:8,931,360...10,077,381
Ensembl chr 6:3,177,897...4,322,710 		JBrowse link
G Ophn1 oligophrenin 1 involved_in ISO (PMID:27160703) RGD PMID:27160703 NCBI chr  X:67,639,956...68,018,217
Ensembl chr  X:63,603,042...63,976,633 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:20808958) RGD PMID:20808958 NCBI chr13:104,196,615...104,251,007
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Top2a DNA topoisomerase II alpha IEP RGD PMID:11170002 RGD:8693630 NCBI chr10:84,441,954...84,473,093
Ensembl chr10:83,945,735...83,976,874 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 acts_upstream_of_or_within ISO (PMID:10624947) RGD PMID:10624947 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:45,851,710...45,877,966 		JBrowse link
G Wnt7a Wnt family member 7A acts_upstream_of_or_within ISO (PMID:9405095) RGD PMID:9405095 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
cerebellar neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crk CRK proto-oncogene, adaptor protein acts_upstream_of_or_within ISO MGI:104686 (PMID:19074029) RGD PMID:19074029 NCBI chr10:61,028,736...61,054,971
Ensembl chr10:60,530,464...60,553,406 		JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO MGI:88508 (PMID:19074029) RGD PMID:19074029 NCBI chr11:97,033,033...97,067,457
Ensembl chr11:83,526,530...83,563,238 		JBrowse link
G L1cam L1 cell adhesion molecule IMP RGD PMID:27027721 RGD:401959323 NCBI chr  X:156,748,597...156,775,116
Ensembl chr  X:151,597,277...151,623,857 		JBrowse link
G Nanos1 nanos C2HC-type zinc finger 1 acts_upstream_of_or_within ISO (PMID:26609159) RGD PMID:26609159 NCBI chr 1:269,883,713...269,887,611
Ensembl chr 1:259,897,939...259,898,730 		JBrowse link
G Samd4b sterile alpha motif domain containing 4B acts_upstream_of_or_within ISO (PMID:26609159) RGD PMID:26609159 NCBI chr 1:92,816,955...92,855,243
Ensembl chr 1:83,689,413...83,713,853 		JBrowse link
cerebellar Purkinje cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 acts_upstream_of_or_within
involved_in		 ISO MGI:1856535|MGI:1857523|MGI:2443047|MGI:6270378 (PMID:10630211), (PMID:30420556)
(PMID:11884758), (PMID:16465590), (PMID:21074048)		 RGD PMID:10630211 PMID:11884758 PMID:16465590 PMID:21074048 PMID:30420556 NCBI chr17:5,092,108...5,244,414
Ensembl chr17:5,120,609...5,238,869 		JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1857876 (PMID:9668038) RGD PMID:9668038 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:146,896,332...147,140,665 		JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856466 (PMID:2473662) RGD PMID:2473662 NCBI chr  X:75,159,635...75,267,094
Ensembl chr  X:71,094,202...71,198,354 		JBrowse link
G Atxn2 ataxin 2 acts_upstream_of_or_within ISO MGI:3505741 (PMID:10973246) RGD PMID:10973246 NCBI chr12:40,413,657...40,509,895
Ensembl chr12:34,754,137...34,851,479 		JBrowse link
G Cacna1a calcium voltage-gated channel subunit alpha1 A acts_upstream_of_or_within ISO MGI:1856209|MGI:1856210 (PMID:10630211), (PMID:1306163), (PMID:7834360) RGD PMID:1306163 PMID:7834360 PMID:10630211 NCBI chr19:40,425,560...40,724,810
Ensembl chr19:23,520,741...23,823,225 		JBrowse link
G Cend1 cell cycle exit and neuronal differentiation 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:4831137 (PMID:20153830)		 GO_Central
RGD		 PMID:20153830 GO_REF:0000033 NCBI chr 1:205,954,713...205,957,710
Ensembl chr 1:196,523,920...196,528,302 		JBrowse link
G Faim2 Fas apoptotic inhibitory molecule 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21957071)		 UniProt
Ensembl
RGD		 PMID:21957071 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:132,512,095...132,539,192
Ensembl chr 7:130,633,348...130,659,168 		JBrowse link
G Foxp2 forkhead box P2 involved_in ISO MGI:3778383 (PMID:22133810) RGD PMID:22133810 NCBI chr 4:44,099,848...44,677,700
Ensembl chr 4:43,133,912...43,711,683 		JBrowse link
G Herc1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 acts_upstream_of_or_within ISO MGI:3613033 (PMID:20041218) RGD PMID:20041218 NCBI chr 8:75,796,347...75,965,347
Ensembl chr 8:66,856,935...67,070,312 		JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within ISO MGI:3719683 (PMID:17664423) RGD PMID:17664423 NCBI chr 1:254,813,161...254,838,931
Ensembl chr 1:244,877,173...244,890,013 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:107792 (PMID:17664423)		 UniProt
RGD		 PMID:17664423 GO_REF:0000024 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lhx5 LIM homeobox 5 acts_upstream_of_or_within ISO MGI:99783 (PMID:17664423) RGD PMID:17664423 NCBI chr12:41,786,746...41,795,183
Ensembl chr12:36,126,186...36,134,625 		JBrowse link
G Psap prosaposin acts_upstream_of_or_within ISO MGI:3521746 (PMID:15345707) RGD PMID:15345707 NCBI chr20:28,756,951...28,783,422
Ensembl chr20:28,214,271...28,240,498 		JBrowse link
G Rora RAR-related orphan receptor A acts_upstream_of_or_within ISO MGI:1857035 (PMID:8996814) RGD PMID:8996814 NCBI chr 8:78,182,710...78,915,730
Ensembl chr 8:69,301,733...70,025,931 		JBrowse link
G Skor2 SKI family transcriptional corepressor 2 acts_upstream_of_or_within ISO MGI:5300464 (PMID:21937600), (PMID:24491816) RGD PMID:21937600 PMID:24491816 NCBI chr18:72,679,449...72,721,117
Ensembl chr18:70,404,489...70,440,342 		JBrowse link
G Slc25a46 solute carrier family 25, member 46 acts_upstream_of_or_within ISO MGI:6358090 (PMID:28934388) RGD PMID:28934388 NCBI chr18:23,490,422...23,519,599
Ensembl chr18:23,215,962...23,244,314 		JBrowse link
G Top2a DNA topoisomerase II alpha IEP RGD PMID:11170002 RGD:8693630 NCBI chr10:84,441,954...84,473,093
Ensembl chr10:83,945,735...83,976,874 		JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within ISO MGI:2137515|MGI:2152544|MGI:2179048|MGI:5587034 (PMID:29615573) RGD PMID:29615573 NCBI chr 3:71,269,425...71,343,936
Ensembl chr 3:50,861,367...50,935,903 		JBrowse link
G Ttll1 TTL family tubulin polyglutamylase complex subunit L1 acts_upstream_of_or_within ISO MGI:1918244 (PMID:30420556) RGD PMID:30420556 NCBI chr 7:116,499,536...116,528,833
Ensembl chr 7:114,619,508...114,648,761 		JBrowse link
cerebral cortex GABAergic interneuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrna2 cholinergic receptor nicotinic alpha 2 subunit part_of IEP RGD PMID:17046198 RGD:152995358 NCBI chr15:44,517,862...44,534,144
Ensembl chr15:40,342,317...40,358,601 		JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO MGI:2180784 (PMID:23258346) RGD PMID:23258346 NCBI chr12:16,150,411...16,170,864
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
G Rac3 Rac family small GTPase 3 acts_upstream_of_or_within ISO MGI:97845 (PMID:23258346) RGD PMID:23258346 NCBI chr10:106,501,133...106,503,569
Ensembl chr10:105,993,087...106,005,260 		JBrowse link
cerebral cortex GABAergic interneuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 involved_in ISO (PMID:12050665) RGD PMID:12050665 NCBI chr 7:23,790,642...23,793,509
Ensembl chr 7:21,903,126...21,905,993 		JBrowse link
G Dlx1 distal-less homeobox 1 acts_upstream_of_or_within ISO MGI:94902 (PMID:15028753) RGD PMID:15028753 NCBI chr 3:76,763,864...76,768,454
Ensembl chr 3:56,356,190...56,360,780 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO MGI:94901 (PMID:15028753) RGD PMID:15028753 NCBI chr 3:76,777,912...76,781,255
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
G Nkx2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857494|MGI:3653645 (PMID:15028753), (PMID:18786356)		 Ensembl
RGD		 PMID:15028753 PMID:18786356 GO_REF:0000107 NCBI chr 6:79,731,677...79,735,952
Ensembl chr 6:73,996,601...73,999,791 		JBrowse link
cerebral cortex GABAergic interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:94902 (PMID:17678855)		 Ensembl
RGD		 PMID:17678855 GO_REF:0000107 NCBI chr 3:76,763,864...76,768,454
Ensembl chr 3:56,356,190...56,360,780 		JBrowse link
G Dlx2 distal-less homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:94901 (PMID:17678855)		 Ensembl
RGD		 PMID:17678855 GO_REF:0000107 NCBI chr 3:76,777,912...76,781,255
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
cerebral cortex GABAergic interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2679972 (PMID:17460091)		 Ensembl
RGD		 PMID:17460091 GO_REF:0000107 NCBI chr  X:62,010,097...62,022,009
Ensembl chr  X:58,016,233...58,028,142 		JBrowse link
G Cntn2 contactin 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11714688)
GO_REF:0000107		 RGD
Ensembl		 PMID:11714688 GO_REF:0000107 NCBI chr13:46,497,269...46,528,112
Ensembl chr13:43,947,265...43,975,887 		JBrowse link
G Drd1 dopamine receptor D1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857875 (PMID:17409246)		 Ensembl
RGD		 PMID:17409246 GO_REF:0000107 NCBI chr17:10,545,488...10,550,029
Ensembl chr17:10,540,558...10,545,002 		JBrowse link
G Drd2 dopamine receptor D2 acts_upstream_of_or_within ISO MGI:1857875 (PMID:17409246) RGD PMID:17409246 NCBI chr 8:58,605,403...58,669,339
Ensembl chr 8:49,708,927...49,772,875 		JBrowse link
G Fezf2 Fez family zinc finger 2 acts_upstream_of_or_within ISO MGI:3046867 (PMID:21338885) RGD PMID:21338885 NCBI chr15:15,199,045...15,207,982
Ensembl chr15:12,773,762...12,777,554 		JBrowse link
G Lhx6 LIM homeobox 6 acts_upstream_of_or_within ISO MGI:3702518 (PMID:17376969) RGD PMID:17376969 NCBI chr 3:39,829,846...39,853,681
Ensembl chr 3:19,433,494...19,456,061 		JBrowse link
cerebral cortex neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C11h21orf91 similar to human chromosome 21 open reading frame 91 involved_in ISO (PMID:27404227) RGD PMID:27404227 NCBI chr11:30,716,034...30,749,292
Ensembl chr11:17,229,138...17,262,483 		JBrowse link
G Chd5 chromodomain helicase DNA binding protein 5 involved_in ISS
ISO		 GO_REF:0000024
(PMID:23948251)		 UniProt
RGD		 PMID:23948251 GO_REF:0000024 NCBI chr 5:168,130,851...168,181,705
Ensembl chr 5:162,848,394...162,896,291 		JBrowse link
G Elavl4 ELAV like RNA binding protein 4 acts_upstream_of_or_within ISO (PMID:32245946) RGD PMID:32245946 NCBI chr 5:130,285,418...130,429,106
Ensembl chr 5:125,056,848...125,200,446 		JBrowse link
G Emx1 empty spiracles homeobox 1 acts_upstream_of_or_within ISO MGI:2682313 (PMID:23178126) RGD PMID:23178126 NCBI chr 4:119,282,692...119,300,822
Ensembl chr 4:117,725,155...117,741,613 		JBrowse link
G Eomes eomesodermin involved_in ISO (PMID:18940588) RGD PMID:18940588 NCBI chr 8:127,059,215...127,067,070
Ensembl chr 8:118,181,777...118,188,316 		JBrowse link
G Fezf2 Fez family zinc finger 2 acts_upstream_of_or_within ISO MGI:3046867 (PMID:21338885) RGD PMID:21338885 NCBI chr15:15,199,045...15,207,982
Ensembl chr15:12,773,762...12,777,554 		JBrowse link
G Gdpd5 glycerophosphodiester phosphodiesterase domain containing 5 acts_upstream_of_or_within ISO MGI:5302017 (PMID:22951639) RGD PMID:22951639 NCBI chr 1:163,091,844...163,173,559
Ensembl chr 1:153,679,718...153,761,446 		JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857299 (PMID:11297820)		 Ensembl
RGD		 PMID:11297820 GO_REF:0000107 NCBI chr  X:137,655,744...137,687,718
Ensembl chr  X:132,736,096...132,768,154 		JBrowse link
G Id4 inhibitor of DNA binding 4 acts_upstream_of_or_within ISO MGI:3505549 (PMID:15469968) RGD PMID:15469968 NCBI chr17:16,595,724...16,598,293
Ensembl chr17:16,389,387...16,392,470 		JBrowse link
G Lhx6 LIM homeobox 6 acts_upstream_of_or_within ISO MGI:108067 (PMID:18339674) RGD PMID:18339674 NCBI chr 3:39,829,846...39,853,681
Ensembl chr 3:19,433,494...19,456,061 		JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO MGI:1306803|MGI:1857494 (PMID:18339674) RGD PMID:18339674 NCBI chr 6:79,731,677...79,735,952
Ensembl chr 6:73,996,601...73,999,791 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO MGI:2151350 (PMID:12902391), (PMID:15950290) RGD PMID:12902391 PMID:15950290 NCBI chr20:47,632,347...47,653,464
Ensembl chr20:46,050,414...46,073,949 		JBrowse link
G Ophn1 oligophrenin 1 involved_in ISO (PMID:27160703) RGD PMID:27160703 NCBI chr  X:67,639,956...68,018,217
Ensembl chr  X:63,603,042...63,976,633 		JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 IMP RGD PMID:16144905 RGD:1601501 NCBI chr10:60,031,441...60,090,259
Ensembl chr10:59,534,117...59,591,808 		JBrowse link
G Pex5 peroxisomal biogenesis factor 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2154454 (PMID:9288097)
GO_REF:0000107		 RGD
Ensembl		 PMID:9288097 GO_REF:0000107 NCBI chr 4:158,956,973...158,983,581
Ensembl chr 4:157,270,672...157,296,431 		JBrowse link
G Sin3a SIN3 transcription regulator family member A involved_in ISO (PMID:27399968) RGD PMID:27399968 NCBI chr 8:66,377,471...66,432,150
Ensembl chr 8:57,481,573...57,536,192 		JBrowse link
G Tox thymocyte selection-associated high mobility group box involved_in ISO (PMID:25527292) RGD PMID:25527292 NCBI chr 5:24,672,487...24,968,754
Ensembl chr 5:19,874,467...20,171,272 		JBrowse link
G Zfp335 zinc finger protein 335 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:5470136|MGI:95387 (PMID:23178126)		 Ensembl
RGD		 PMID:23178126 GO_REF:0000107 NCBI chr 3:174,046,789...174,073,076
Ensembl chr 3:153,627,467...153,647,054 		JBrowse link
chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slit1 slit guidance ligand 1 NOT|involved_in ISO (PMID:11748139) RGD PMID:11748139 NCBI chr 1:250,358,917...250,507,476
Ensembl chr 1:240,409,561...240,558,127 		JBrowse link
G Slit2 slit guidance ligand 2 NOT|involved_in ISO (PMID:11748139) RGD PMID:11748139 NCBI chr14:66,829,661...67,168,517
Ensembl chr14:62,617,067...62,955,948 		JBrowse link
G Slit3 slit guidance ligand 3 NOT|involved_in ISO (PMID:11748139) RGD PMID:11748139 NCBI chr10:20,075,929...20,660,704
Ensembl chr10:19,571,684...20,156,634 		JBrowse link
chemorepulsion involved in postnatal olfactory bulb interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Robo1 roundabout guidance receptor 1 involved_in ISO (PMID:15207848) RGD PMID:15207848 NCBI chr11:24,067,869...25,108,694
Ensembl chr11:10,580,908...11,620,203 		JBrowse link
G Slit2 slit guidance ligand 2 involved_in ISO
IEA		 (PMID:15207848)
GO_REF:0000107		 RGD
Ensembl		 PMID:15207848 GO_REF:0000107 NCBI chr14:66,829,661...67,168,517
Ensembl chr14:62,617,067...62,955,948 		JBrowse link
commissural neuron differentiation in spinal cord term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Draxin dorsal inhibitory axon guidance protein involved_in IBA
ISO		 GO_REF:0000033
(PMID:19150847)		 GO_Central
RGD		 PMID:19150847 GO_REF:0000033 NCBI chr 5:163,813,308...163,846,609
Ensembl chr 5:158,530,342...158,564,483 		JBrowse link
commitment of neuronal cell to specific neuron type in forebrain term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857470 (PMID:22991444) RGD PMID:22991444 NCBI chr 7:23,790,642...23,793,509
Ensembl chr 7:21,903,126...21,905,993 		JBrowse link
G Bcl11b BCL11 transcription factor B acts_upstream_of_or_within ISO MGI:2679336 (PMID:23144223) RGD PMID:23144223 NCBI chr 6:132,598,968...132,692,123
Ensembl chr 6:126,834,531...126,928,224 		JBrowse link
G Fezf2 Fez family zinc finger 2 acts_upstream_of_or_within ISO MGI:3046867 (PMID:21338885) RGD PMID:21338885 NCBI chr15:15,199,045...15,207,982
Ensembl chr15:12,773,762...12,777,554 		JBrowse link
G Gata2 GATA binding protein 2 acts_upstream_of_or_within ISO MGI:4818492 (PMID:22991444) RGD PMID:22991444 NCBI chr 4:122,211,501...122,225,058
Ensembl chr 4:120,658,986...120,667,761 		JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856158 (PMID:11124115)		 Ensembl
RGD		 PMID:11124115 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Tbr1 T-box brain transcription factor 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:2679336 (PMID:23144223)		 GO_Central
RGD		 PMID:23144223 GO_REF:0000033 NCBI chr 3:66,758,805...66,769,626
Ensembl chr 3:46,351,213...46,361,041 		JBrowse link
corpus callosum morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:2684610|MGI:4440742|MGI:4440744 (PMID:22284184) RGD PMID:22284184 NCBI chr 2:102,402,622...102,405,732
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Grcc10 gene rich cluster, C10 gene involved_in ISO (PMID:23453665), (PMID:23453666), (PMID:23633300), (PMID:24798461) RGD PMID:23453665 PMID:23453666 PMID:23633300 PMID:24798461 NCBI chr 4:159,237,562...159,239,223 JBrowse link
G Nin ninein acts_upstream_of_or_within ISO MGI:1344407 (PMID:25741725) RGD PMID:25741725 NCBI chr 6:94,261,382...94,363,679
Ensembl chr 6:88,525,742...88,627,639 		JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 involved_in ISO (PMID:9063735) RGD PMID:9063735 NCBI chr10:60,031,441...60,090,259
Ensembl chr10:59,534,117...59,591,808 		JBrowse link
G Prdm8 PR/SET domain 8 acts_upstream_of_or_within ISO MGI:5315763 (PMID:22284184) RGD PMID:22284184 NCBI chr14:11,708,477...11,728,111
Ensembl chr14:11,404,407...11,410,993 		JBrowse link
G Szt2 SZT2 subunit of KICSTOR complex involved_in ISO (PMID:23932106) RGD PMID:23932106 NCBI chr 5:137,182,648...137,229,349
Ensembl chr 5:131,897,275...131,943,904 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4867728 (PMID:21055390)		 Ensembl
RGD		 PMID:21055390 GO_REF:0000107 NCBI chr 1:162,071,459...162,082,972
Ensembl chr 1:152,656,693...152,672,588 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO MGI:2387499|MGI:2668659 (PMID:25741725) RGD PMID:25741725 NCBI chr 3:49,624,028...49,754,323
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
corticospinal neuron axon guidance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scn1b sodium voltage-gated channel beta subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3043422 (PMID:18354028)		 Ensembl
RGD		 PMID:18354028 GO_REF:0000107 NCBI chr 1:95,481,298...95,491,211
Ensembl chr 1:86,353,917...86,363,739 		JBrowse link
corticospinal neuron axon guidance through spinal cord term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slit2 slit guidance ligand 2 involved_in ISO
IEA		 (PMID:10975526)
GO_REF:0000107		 RGD
Ensembl		 PMID:10975526 GO_REF:0000107 NCBI chr14:66,829,661...67,168,517
Ensembl chr14:62,617,067...62,955,948 		JBrowse link
corticospinal tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:2684610|MGI:4440742|MGI:4440744|MGI:99217 (PMID:22284184) RGD PMID:22284184 NCBI chr 2:102,402,622...102,405,732
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Cdh11 cadherin 11 acts_upstream_of_or_within ISO MGI:1930001 (PMID:22284184) RGD PMID:22284184 NCBI chr19:2,152,961...2,312,140
Ensembl chr19:2,148,458...2,304,272 		JBrowse link
G Epha4 Eph receptor A4 involved_in ISS
ISO		 GO_REF:0000024
(PMID:9789074)		 UniProt
RGD		 PMID:9789074 GO_REF:0000024 NCBI chr 9:86,263,982...86,406,744
Ensembl chr 9:78,815,460...78,958,139 		JBrowse link
G Fbxo45 F-box protein 45 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3849742 (PMID:19398581)		 Ensembl
RGD		 PMID:19398581 GO_REF:0000107 NCBI chr11:82,056,457...82,072,080
Ensembl chr11:68,551,122...68,566,800 		JBrowse link
G Nin ninein acts_upstream_of_or_within ISO MGI:1344407 (PMID:25741725) RGD PMID:25741725 NCBI chr 6:94,261,382...94,363,679
Ensembl chr 6:88,525,742...88,627,639 		JBrowse link
G Prdm8 PR/SET domain 8 acts_upstream_of_or_within ISO MGI:5315763 (PMID:22284184) RGD PMID:22284184 NCBI chr14:11,708,477...11,728,111
Ensembl chr14:11,404,407...11,410,993 		JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO MGI:6451766 (PMID:28237315) RGD PMID:28237315 NCBI chr 3:129,453,118...129,526,469
Ensembl chr 3:109,008,135...109,072,911 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO MGI:2387499|MGI:2668659 (PMID:25741725) RGD PMID:25741725 NCBI chr 3:49,624,028...49,754,323
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
efferent axon development in a lateral line nerve term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phox2b paired-like homeobox 2b acts_upstream_of_or_within ISO MGI:1926861 (PMID:12885554) RGD PMID:12885554 NCBI chr14:41,420,011...41,424,527
Ensembl chr14:41,066,264...41,068,978 		JBrowse link
embryonic olfactory bulb interneuron precursor migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2429693 (PMID:15677725)		 Ensembl
RGD		 PMID:15677725 GO_REF:0000107 NCBI chr  X:62,010,097...62,022,009
Ensembl chr  X:58,016,233...58,028,142 		JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO MGI:1932522|MGI:2663662 (PMID:17409253) RGD PMID:17409253 NCBI chr12:16,150,411...16,170,864
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
fibroblast growth factor receptor signaling pathway involved in forebrain neuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zdhhc16 zinc finger DHHC-type palmitoyltransferase 16 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:250,694,922...250,706,319
Ensembl chr 1:240,745,641...240,757,009 		JBrowse link
forebrain neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 IMP induction of dopaminergic neurons in the rostral forebrain RGD PMID:9630220 RGD:2289424 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO MGI:1857634 (PMID:21048141) RGD PMID:21048141 NCBI chr 9:97,957,304...97,959,883
Ensembl chr 9:90,509,633...90,512,212 		JBrowse link
G Gnaq G protein subunit alpha q involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2151661 (PMID:15340067)		 Ensembl
RGD		 PMID:15340067 GO_REF:0000107 NCBI chr 1:222,852,453...223,098,754
Ensembl chr 1:213,424,465...213,667,672 		JBrowse link
G Lhx6 LIM homeobox 6 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1096343 (PMID:15217369)		 GO_Central
RGD		 PMID:15217369 GO_REF:0000033 NCBI chr 3:39,829,846...39,853,681
Ensembl chr 3:19,433,494...19,456,061 		JBrowse link
G Lhx8 LIM homeobox 8 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1306803 (PMID:15217369)		 GO_Central
RGD		 PMID:15217369 GO_REF:0000033 NCBI chr 2:245,904,712...245,929,376
Ensembl chr 2:243,244,961...243,269,416 		JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:19453629)		 UniProt
RGD		 PMID:19453629 GO_REF:0000024 NCBI chr 2:166,505,868...166,728,139
Ensembl chr 2:164,207,513...164,244,247 		JBrowse link
G Secisbp2 SECIS binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2181426|MGI:5583885 (PMID:24844465)		 Ensembl
RGD		 PMID:24844465 GO_REF:0000107 NCBI chr17:13,690,263...13,721,303
Ensembl chr17:13,538,513...13,569,523 		JBrowse link
G Sox1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO MGI:2137412 (PMID:15882093) RGD PMID:15882093 NCBI chr16:83,837,689...83,841,703
Ensembl chr16:77,137,584...77,138,762 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:1888387 (PMID:10803593) RGD PMID:10803593 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
forebrain neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 IDA RGD PMID:17936272 RGD:2314144 NCBI chr 7:23,790,642...23,793,509
Ensembl chr 7:21,903,126...21,905,993 		JBrowse link
G Csf1r colony stimulating factor 1 receptor involved_in IEA
ISO		 GO_REF:0000107
(PMID:22542597)		 Ensembl
RGD		 PMID:22542597 GO_REF:0000107 NCBI chr18:56,834,152...56,860,804
Ensembl chr18:54,546,659...54,590,415 		JBrowse link
G Dlx1 distal-less homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:94902 (PMID:11163262)		 Ensembl
RGD		 PMID:11163262 GO_REF:0000107 NCBI chr 3:76,763,864...76,768,454
Ensembl chr 3:56,356,190...56,360,780 		JBrowse link
G Dlx2 distal-less homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:94901 (PMID:11163262)		 Ensembl
RGD		 PMID:11163262 GO_REF:0000107 NCBI chr 3:76,777,912...76,781,255
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
G Lhx5 LIM homeobox 5 acts_upstream_of_or_within ISO MGI:2152620 (PMID:10325223) RGD PMID:10325223 NCBI chr12:41,786,746...41,795,183
Ensembl chr12:36,126,186...36,134,625 		JBrowse link
G Lhx8 LIM homeobox 8 acts_upstream_of_or_within ISO MGI:3603531 (PMID:15978004) RGD PMID:15978004 NCBI chr 2:245,904,712...245,929,376
Ensembl chr 2:243,244,961...243,269,416 		JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO MGI:1857494 (PMID:11163262) RGD PMID:11163262 NCBI chr 6:79,731,677...79,735,952
Ensembl chr 6:73,996,601...73,999,791 		JBrowse link
G Otp orthopedia homeobox acts_upstream_of_or_within ISO MGI:2180541 (PMID:17481897) RGD PMID:17481897 NCBI chr 2:27,842,892...27,851,093
Ensembl chr 2:26,108,163...26,116,359 		JBrowse link
G Phlda1 pleckstrin homology-like domain, family A, member 1 IEP RGD PMID:10428057 RGD:70034 NCBI chr 7:48,853,690...48,855,894
Ensembl chr 7:46,967,409...46,969,861 		JBrowse link
G Pou3f4 POU class 3 homeobox 4 acts_upstream_of_or_within ISO (PMID:9889200) RGD PMID:9889200 NCBI chr  X:79,974,808...79,976,085
Ensembl chr  X:75,858,646...75,859,923 		JBrowse link
G Sox1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO MGI:2137412 (PMID:15882093) RGD PMID:15882093 NCBI chr16:83,837,689...83,841,703
Ensembl chr16:77,137,584...77,138,762 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:2181440|MGI:3052123 (PMID:15240551) RGD PMID:15240551 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
forebrain neuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx6 LIM homeobox 6 acts_upstream_of_or_within ISO MGI:108067 (PMID:18339674) RGD PMID:18339674 NCBI chr 3:39,829,846...39,853,681
Ensembl chr 3:19,433,494...19,456,061 		JBrowse link
G Nkx2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1306803|MGI:1857494 (PMID:18339674)		 Ensembl
RGD		 PMID:18339674 GO_REF:0000107 NCBI chr 6:79,731,677...79,735,952
Ensembl chr 6:73,996,601...73,999,791 		JBrowse link
G Tfap2c transcription factor AP-2 gamma acts_upstream_of_or_within ISO MGI:2176695 (PMID:19749747) RGD PMID:19749747 NCBI chr 3:181,733,524...181,742,412
Ensembl chr 3:161,315,031...161,322,995 		JBrowse link
gonadotrophin-releasing hormone neuronal migration to the hypothalamus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ndnf neuron-derived neurotrophic factor involved_in ISO (PMID:31883645) RGD PMID:31883645 NCBI chr 4:96,274,147...96,311,624
Ensembl chr 4:94,944,360...94,981,873 		JBrowse link
G Nrp1 neuropilin 1 involved_in ISO (PMID:21059704) RGD PMID:21059704 NCBI chr19:73,256,557...73,411,705
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Nrp2 neuropilin 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:21059704)		 Ensembl
RGD		 PMID:21059704 GO_REF:0000107 NCBI chr 9:71,616,602...71,731,869
Ensembl chr 9:64,123,132...64,237,958 		JBrowse link
G Plxna1 plexin A1 involved_in ISO UniProtKB:P70208 (PMID:31690636) RGD PMID:31690636 NCBI chr 4:123,295,165...123,340,132
Ensembl chr 4:121,737,945...122,024,196 		JBrowse link
G Plxna3 plexin A3 involved_in ISO UniProtKB:P70206 (PMID:31690636) RGD PMID:31690636 NCBI chr  X:157,266,986...157,282,896
Ensembl chr  X:152,115,819...152,131,603 		JBrowse link
G Sema3a semaphorin 3A involved_in ISO (PMID:21059704) RGD PMID:21059704 NCBI chr 4:22,239,418...22,709,907
Ensembl chr 4:21,287,982...21,494,432 		JBrowse link
G Sema3e semaphorin 3E involved_in ISO (PMID:25985275) RGD PMID:25985275 NCBI chr 4:21,252,686...21,510,449
Ensembl chr 4:20,299,718...20,555,229 		JBrowse link
hippocampal pyramidal neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kcnq2 potassium voltage-gated channel subfamily Q member 2 acts_upstream_of_or_within ISO (PMID:15608631) RGD PMID:15608631 NCBI chr 3:188,572,345...188,631,391
Ensembl chr 3:168,195,357...168,275,071 		JBrowse link
hypothalamus gonadotrophin-releasing hormone neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nhlh2 nescient helix loop helix 2 acts_upstream_of_or_within_positive_effect ISO (PMID:23785158) RGD PMID:23785158 NCBI chr 2:192,132,848...192,138,186
Ensembl chr 2:189,442,711...189,449,625 		JBrowse link
G Ubb ubiquitin B acts_upstream_of_or_within ISO MGI:3774112 (PMID:18299572) RGD PMID:18299572 NCBI chr10:47,746,923...47,748,628
Ensembl chr10:47,245,637...47,249,333 		JBrowse link
medial motor column neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within ISO MGI:101776 (PMID:9865699) RGD PMID:9865699 NCBI chr 3:29,424,620...29,432,637
Ensembl chr 3:9,027,425...9,034,480 		JBrowse link
G Lhx4 LIM homeobox 4 acts_upstream_of_or_within ISO MGI:102673 (PMID:9865699) RGD PMID:9865699 NCBI chr13:70,423,768...70,477,337
Ensembl chr13:67,877,109...67,927,003 		JBrowse link
midbrain dopaminergic neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csnk1d casein kinase 1, delta involved_in ISO UniProtKB:P22725 (PMID:17244647) RGD PMID:17244647 NCBI chr10:106,713,497...106,754,953
Ensembl chr10:106,221,992...106,256,614 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:19122665)		 Ensembl
RGD		 PMID:19122665 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Lmx1a LIM homeobox transcription factor 1 alpha involved_in ISO (PMID:19951692) RGD PMID:19951692 NCBI chr13:82,367,493...82,511,157
Ensembl chr13:79,835,019...79,978,253 		JBrowse link
G Rac1 Rac family small GTPase 1 involved_in ISO (PMID:18953410), (PMID:23109420) RGD PMID:18953410 PMID:23109420 NCBI chr12:16,150,411...16,170,864
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
G Ryk receptor-like tyrosine kinase involved_in ISO (PMID:23517308) RGD PMID:23517308 NCBI chr 8:112,298,158...112,370,912
Ensembl chr 8:103,419,275...103,491,698 		JBrowse link
G Wnt1 Wnt family member 1 involved_in ISO (PMID:19951692), (PMID:23324743) RGD PMID:19951692 PMID:23324743 NCBI chr 7:131,817,558...131,821,605
Ensembl chr 7:129,938,604...129,942,651 		JBrowse link
G Wnt2 Wnt family member 2 involved_in ISO (PMID:20018874) RGD PMID:20018874 NCBI chr 4:47,294,300...47,340,284
Ensembl chr 4:46,333,998...46,374,402 		JBrowse link
G Wnt3 Wnt family member 3 involved_in ISO (PMID:25640183) RGD PMID:25640183 NCBI chr10:89,180,224...89,224,195
Ensembl chr10:88,680,248...88,724,099 		JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO		 GO_REF:0000107
UniProtKB:P04426 (PMID:14557550), (PMID:15748172), (PMID:18953410), (PMID:23324743), (PMID:23517308)		 Ensembl
RGD		 PMID:14557550 PMID:15748172 PMID:18953410 PMID:23324743 PMID:23517308 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Wnt9b Wnt family member 9B involved_in ISO (PMID:25640183) RGD PMID:25640183 NCBI chr10:89,135,362...89,157,065
Ensembl chr10:88,635,331...88,657,035 		JBrowse link
negative regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO MGI:3052661|MGI:4841554 (PMID:25654255) RGD PMID:25654255 NCBI chr 5:164,527,083...164,677,037
Ensembl chr 5:159,243,995...159,393,400 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO (PMID:15976303) RGD PMID:15976303 NCBI chr 7:1,896,229...1,909,147
Ensembl chr 7:1,311,732...1,320,725 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2149672 (PMID:16038893)		 Ensembl
RGD		 PMID:16038893 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Pou4f2 POU class 4 homeobox 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:21875655)		 UniProt
RGD		 PMID:21875655 GO_REF:0000024 NCBI chr19:46,390,958...46,394,599
Ensembl chr19:29,486,686...29,490,327 		JBrowse link
negative regulation of forebrain neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B2m beta-2 microglobulin involved_in ISO
IEA		 (PMID:26147761)
GO_REF:0000107		 RGD
Ensembl		 PMID:26147761 GO_REF:0000107 NCBI chr 3:129,549,236...129,555,354
Ensembl chr 3:109,095,729...109,101,766 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IDA
ISO		 PMID:11399758
MGI:104876 (PMID:18579678)		 RGD PMID:18579678 PMID:11399758 RGD:8554692 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in IDA PMID:11399758 UniProt PMID:11399758 RGD:8554692 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:165,522,234...165,523,001 		JBrowse link
G Ptger3 prostaglandin E receptor 3 IMP RGD PMID:19555672 RGD:10043320 NCBI chr 2:249,264,985...249,409,966
Ensembl chr 2:246,606,183...246,684,434 		JBrowse link
olfactory bulb interneuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf5 activating transcription factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:5467393 (PMID:23090999)		 Ensembl
RGD		 PMID:23090999 GO_REF:0000107 NCBI chr 1:104,432,094...104,437,611
Ensembl chr 1:95,295,610...95,299,707 		JBrowse link
G Robo1 roundabout guidance receptor 1 involved_in ISO UniProtKB:Q7TPD3 (PMID:17360927) RGD PMID:17360927 NCBI chr11:24,067,869...25,108,694
Ensembl chr11:10,580,908...11,620,203 		JBrowse link
G Robo2 roundabout guidance receptor 2 involved_in ISO (PMID:17360927) RGD PMID:17360927 NCBI chr11:26,015,919...27,583,750
Ensembl chr11:12,528,951...13,041,536 		JBrowse link
G Sall3 spalt-like transcription factor 3 acts_upstream_of_or_within ISO MGI:3052730 (PMID:18260139) RGD PMID:18260139 NCBI chr18:76,680,997...76,700,905
Ensembl chr18:74,407,560...74,426,789 		JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO		 GO_REF:0000107
(PMID:21539518)		 Ensembl
RGD		 PMID:21539518 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
olfactory bulb interneuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf5 activating transcription factor 5 acts_upstream_of_or_within ISO MGI:5467393 (PMID:23090999) RGD PMID:23090999 NCBI chr 1:104,432,094...104,437,611
Ensembl chr 1:95,295,610...95,299,707 		JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO (PMID:18184563) RGD PMID:18184563 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Dlx5 distal-less homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2180475 (PMID:25937343)		 Ensembl
RGD		 PMID:25937343 GO_REF:0000107 NCBI chr 4:35,965,579...35,969,973
Ensembl chr 4:34,999,139...35,003,407 		JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:15543145)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:15543145 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:76,973,386...78,045,633
Ensembl chr 9:69,531,481...70,596,595 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO MGI:2150162 (PMID:11060228) RGD PMID:11060228 NCBI chr14:33,477,968...33,480,320
Ensembl chr14:33,124,381...33,126,105 		JBrowse link
G Mir200a microRNA 200a acts_upstream_of_or_within ISO (PMID:25937343) RGD PMID:25937343 NCBI chr 5:171,930,717...171,930,805 JBrowse link
G Mir200b microRNA 200b acts_upstream_of_or_within ISO (PMID:25937343) RGD PMID:25937343 NCBI chr 5:171,931,495...171,931,589
Ensembl chr 5:166,649,272...166,649,366 		JBrowse link
G Mir200c microRNA 200c acts_upstream_of_or_within ISO (PMID:25937343) RGD PMID:25937343 NCBI chr 4:159,209,965...159,210,033 JBrowse link
G Mir9-3 microRNA 9-3 acts_upstream_of_or_within ISO (PMID:25937343) RGD PMID:25937343 NCBI chr 1:142,849,400...142,849,489 JBrowse link
G Sall1 spalt-like transcription factor 1 involved_in ISO (PMID:18024993) RGD PMID:18024993 NCBI chr19:34,179,316...34,196,278
Ensembl chr19:18,007,503...18,022,705 		JBrowse link
G Uncx UNC homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1928812 (PMID:20692344)		 Ensembl
RGD		 PMID:20692344 GO_REF:0000107 NCBI chr12:20,206,604...20,211,125
Ensembl chr12:15,092,784...15,097,300 		JBrowse link
positive regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:21875655)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:21875655 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:76,763,864...76,768,454
Ensembl chr 3:56,356,190...56,360,780 		JBrowse link
G Dlx2 distal-less homeobox 2 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:21875655)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:21875655 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:76,777,912...76,781,255
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within ISO (PMID:18973577) RGD PMID:18973577 NCBI chr 9:118,194,735...118,204,354
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of_or_within ISO (PMID:18926818) RGD PMID:18926818 NCBI chr 3:165,791,101...165,808,669
Ensembl chr 3:145,333,418...145,348,596
Ensembl chr17:145,333,418...145,348,596 		JBrowse link
positive regulation of forebrain neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurog2 neurogenin 2 acts_upstream_of_or_within ISO (PMID:18579678) RGD PMID:18579678 NCBI chr 2:218,767,205...218,769,772
Ensembl chr 2:216,093,363...216,094,154 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:20808958) RGD PMID:20808958 NCBI chr13:104,196,615...104,251,007
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
positive regulation of midbrain dopaminergic neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO (PMID:21347250) RGD PMID:21347250 NCBI chr 1:237,794,969...237,798,650
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
postnatal olfactory bulb interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 Fibroblast growth factor receptor 1 IMP RGD PMID:20083104 RGD:2325172 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
pyramidal neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO MGI:2386545|MGI:3587769 (PMID:16625205) RGD PMID:16625205 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:147,718,752...147,925,593 		JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856466 (PMID:2473662) RGD PMID:2473662 NCBI chr  X:75,159,635...75,267,094
Ensembl chr  X:71,094,202...71,198,354 		JBrowse link
G Dclk2 doublecortin-like kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1277171 (PMID:19342486)		 Ensembl
RGD		 PMID:19342486 GO_REF:0000107 NCBI chr 2:174,506,660...174,636,353
Ensembl chr 2:172,208,706...172,338,250 		JBrowse link
G Dcx doublecortin involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1918012 (PMID:19342486)		 Ensembl
RGD		 PMID:19342486 GO_REF:0000107 NCBI chr  X:112,227,455...112,370,291
Ensembl chr  X:107,430,767...107,507,476 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO (PMID:20410112) RGD PMID:20410112 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Ogdh oxoglutarate dehydrogenase involved_in IEA
ISO		 GO_REF:0000107
(PMID:16901643)		 Ensembl
RGD		 PMID:16901643 GO_REF:0000107 NCBI chr14:85,363,949...85,431,405
Ensembl chr14:81,150,091...81,217,479 		JBrowse link
G Plxna3 plexin A3 acts_upstream_of_or_within ISO MGI:2386961 (PMID:11683995) RGD PMID:11683995 NCBI chr  X:157,266,986...157,282,896
Ensembl chr  X:152,115,819...152,131,603 		JBrowse link
G Scyl2 SCY1 like pseudokinase 2 involved_in ISO (PMID:26203146) RGD PMID:26203146 NCBI chr 7:25,951,734...26,004,663
Ensembl chr 7:24,064,404...24,117,305 		JBrowse link
G Slc4a10 solute carrier family 4 member 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3774019 (PMID:18165320)		 Ensembl
RGD		 PMID:18165320 GO_REF:0000107 NCBI chr 3:67,050,925...67,367,637
Ensembl chr 3:46,665,265...46,957,268 		JBrowse link
G Uqcrq ubiquinol-cytochrome c reductase, complex III subunit VII involved_in ISO (PMID:16901643) RGD PMID:16901643 NCBI chr10:38,086,691...38,093,871
Ensembl chr10:37,586,888...37,589,169 		JBrowse link
pyramidal neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl6 BCL6, transcription repressor acts_upstream_of ISO (PMID:23160044) RGD PMID:23160044 NCBI chr11:90,358,753...90,382,049
Ensembl chr11:76,854,090...76,877,389 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:17954912) RGD PMID:17954912 NCBI chr 2:176,902,141...176,916,015
Ensembl chr 2:174,609,403...174,618,263 		JBrowse link
G Tuba1a tubulin, alpha 1A involved_in ISO MGI:5308811 (PMID:22101068) RGD PMID:22101068 NCBI chr 7:131,992,151...131,996,850
Ensembl chr 7:130,081,032...130,196,186 		JBrowse link
G Ulk4 unc-51 like kinase 4 acts_upstream_of_or_within ISO (PMID:35522199) RGD PMID:35522199 NCBI chr 8:129,548,431...129,843,555
Ensembl chr 8:120,670,866...120,966,924 		JBrowse link
G Unc5d unc-5 netrin receptor D acts_upstream_of_or_within ISO (PMID:22726835) RGD PMID:22726835 NCBI chr16:69,563,099...70,109,862
Ensembl chr16:62,860,174...63,401,143 		JBrowse link
pyramidal neuron migration to cerebral cortex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Disc1 DISC1 scaffold protein IMP RGD PMID:16299498 RGD:5509783 NCBI chr19:69,911,548...70,120,970
Ensembl chr19:53,014,616...53,219,778 		JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within ISO (PMID:22726835) RGD PMID:22726835 NCBI chr 6:72,401,582...72,404,392
Ensembl chr 6:66,666,587...66,678,607 		JBrowse link
G Zmiz1 zinc finger, MIZ-type containing 1 involved_in ISO (PMID:30639322) RGD PMID:30639322 NCBI chr16:1,033,983...1,239,425
Ensembl chr16:1,027,325...1,232,597 		JBrowse link
regulation of forebrain neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata2 GATA binding protein 2 acts_upstream_of_or_within ISO MGI:4818492 (PMID:22991444) RGD PMID:22991444 NCBI chr 4:122,211,501...122,225,058
Ensembl chr 4:120,658,986...120,667,761 		JBrowse link
regulation of midbrain dopaminergic neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 involved_in IEA
ISO		 GO_REF:0000107
UniProtKB:P97299 (PMID:22290867)		 Ensembl
RGD		 PMID:22290867 GO_REF:0000107 NCBI chr16:75,278,325...75,316,736
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 involved_in ISO UniProtKB:Q8C4U3 (PMID:22290867) RGD PMID:22290867 NCBI chr 2:171,387,536...171,395,081
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
retrotrapezoid nucleus neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phox2b paired-like homeobox 2b involved_in ISO (PMID:19940179) RGD PMID:19940179 NCBI chr14:41,420,011...41,424,527
Ensembl chr14:41,066,264...41,068,978 		JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95729 (PMID:15215207) RGD PMID:15215207 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:95728 (PMID:15215207) RGD PMID:15215207 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO MGI:4840420 (PMID:19684112) RGD PMID:19684112 NCBI chr 1:255,199,108...255,296,983
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95729 (PMID:15215207) RGD PMID:15215207 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:95728 (PMID:15215207) RGD PMID:15215207 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO MGI:4840420 (PMID:19684112) RGD PMID:19684112 NCBI chr 1:255,199,108...255,296,983
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
somatic motor neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln8 CLN8, transmembrane ER and ERGIC protein acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr16:81,451,941...81,462,046
Ensembl chr16:74,749,662...74,759,774 		JBrowse link
G Phox2a paired-like homeobox 2a involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3521825 (PMID:16319924)		 Ensembl
RGD		 PMID:16319924 GO_REF:0000107 NCBI chr 1:165,590,757...165,595,122
Ensembl chr 1:156,178,754...156,183,118 		JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within ISO MGI:3716885 (PMID:16357211) RGD PMID:16357211 NCBI chr12:39,970,554...40,003,727
Ensembl chr12:34,309,897...34,342,267 		JBrowse link
spinal cord association neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857470 (PMID:16715081) RGD PMID:16715081 NCBI chr 7:23,790,642...23,793,509
Ensembl chr 7:21,903,126...21,905,993 		JBrowse link
G Gdf7 growth differentiation factor 7 acts_upstream_of_or_within ISO MGI:2386906 (PMID:10693795) RGD PMID:10693795 NCBI chr 6:36,890,799...36,901,783
Ensembl chr 6:31,178,119...31,182,447 		JBrowse link
G Gsx1 GS homeobox 1 acts_upstream_of_or_within ISO MGI:95843 (PMID:16715081) RGD PMID:16715081 NCBI chr12:12,994,588...12,996,874
Ensembl chr12:7,881,460...7,882,753 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO MGI:95842 (PMID:16715081) RGD PMID:16715081 NCBI chr14:33,477,968...33,480,320
Ensembl chr14:33,124,381...33,126,105 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISS
ISO		 GO_REF:0000024
UniProtKB:P61375 (PMID:17166926)		 UniProt
RGD		 PMID:17166926 GO_REF:0000024 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within ISO (PMID:19323994) RGD PMID:19323994 NCBI chr 3:29,424,620...29,432,637
Ensembl chr 3:9,027,425...9,034,480 		JBrowse link
G Lhx5 LIM homeobox 5 involved_in ISO UniProtKB:P63006 (PMID:17166926) RGD PMID:17166926 NCBI chr12:41,786,746...41,795,183
Ensembl chr12:36,126,186...36,134,625 		JBrowse link
G Lmo4 LIM domain only 4 acts_upstream_of_or_within ISO MGI:98480 (PMID:19323994) RGD PMID:19323994 NCBI chr 2:235,924,574...235,941,609
Ensembl chr 2:233,264,182...233,280,880 		JBrowse link
G Mdga1 MAM domain containing glycosylphosphatidylinositol anchor 1 involved_in IEP PMID:15019943 HGNC-UCL PMID:15019943 RGD:8554528 NCBI chr20:7,901,856...7,965,834
Ensembl chr20:7,904,358...7,963,471 		JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:97491 (PMID:9858722) RGD PMID:9858722 NCBI chr 9:87,015,960...87,112,531
Ensembl chr 9:79,568,634...79,664,042 		JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO MGI:97487 (PMID:9858722) RGD PMID:9858722 NCBI chr 5:157,279,623...157,381,188
Ensembl chr 5:151,999,092...152,097,979 		JBrowse link
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor acts_upstream_of_or_within ISO MGI:109360 (PMID:19323994) RGD PMID:19323994 NCBI chr 5:133,823,093...133,837,737
Ensembl chr 5:128,587,701...128,600,976 		JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO MGI:98956 (PMID:11877374) RGD PMID:11877374 NCBI chr 7:131,817,558...131,821,605
Ensembl chr 7:129,938,604...129,942,651 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO MGI:98953 (PMID:11877374) RGD PMID:11877374 NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxc10 homeo box C10 acts_upstream_of_or_within ISO MGI:96202 (PMID:18065432) RGD PMID:18065432 NCBI chr 7:135,982,222...135,987,442
Ensembl chr 7:134,103,643...134,108,966 		JBrowse link
G Hoxd10 homeo box D10 acts_upstream_of_or_within ISO MGI:96192 (PMID:18065432) RGD PMID:18065432 NCBI chr 3:80,001,947...80,005,156
Ensembl chr 3:59,594,516...59,597,725 		JBrowse link
G Isl1 ISL LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:102673 (PMID:19666821)		 Ensembl
RGD		 PMID:19666821 GO_REF:0000107 NCBI chr 2:49,813,618...49,823,442
Ensembl chr 2:48,080,522...48,095,584 		JBrowse link
G Isl2 ISL LIM homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:102673 (PMID:19666821)		 Ensembl
RGD		 PMID:19666821 GO_REF:0000107 NCBI chr 8:64,819,879...64,824,864
Ensembl chr 8:55,923,805...55,928,790 		JBrowse link
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within ISO MGI:101791|MGI:109156 (PMID:19666821) RGD PMID:19666821 NCBI chr 3:29,424,620...29,432,637
Ensembl chr 3:9,027,425...9,034,480 		JBrowse link
G Lmo4 LIM domain only 4 involved_in ISO (PMID:18539116) RGD PMID:18539116 NCBI chr 2:235,924,574...235,941,609
Ensembl chr 2:233,264,182...233,280,880 		JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:18539116)
MGI:2182358|MGI:2182361|MGI:2182363 (PMID:10482234)		 GO_Central
RGD		 PMID:10482234 PMID:18539116 GO_REF:0000033 NCBI chr 4:6,541,645...6,546,604
Ensembl chr 4:5,866,506...5,871,465 		JBrowse link
G Olig3 oligodendrocyte transcription factor 3 acts_upstream_of_or_within ISO MGI:3573868 (PMID:15769945) RGD PMID:15769945 NCBI chr 1:15,900,881...15,902,953
Ensembl chr 1:14,081,328...14,082,149 		JBrowse link
spinal cord motor neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Abt1 activator of basal transcription 1 acts_upstream_of_or_within ISO MGI:99954 (PMID:19299493) RGD PMID:19299493 NCBI chr17:42,127,173...42,129,281
Ensembl chr17:41,699,147...41,701,259 		JBrowse link
G Cacna1a calcium voltage-gated channel subunit alpha1 A acts_upstream_of_or_within ISO MGI:1856209|MGI:1856211 (PMID:17156092) RGD PMID:17156092 NCBI chr19:40,425,560...40,724,810
Ensembl chr19:23,520,741...23,823,225 		JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein acts_upstream_of_or_within ISO MGI:1856959 (PMID:2061715) RGD PMID:2061715 NCBI chr16:81,451,941...81,462,046
Ensembl chr16:74,749,662...74,759,774 		JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589208 (PMID:21338882) RGD PMID:21338882 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:105373|MGI:95729|MGI:98297 (PMID:21552265)		 Ensembl
RGD		 PMID:21552265 GO_REF:0000107 NCBI chr 8:12,473,955...12,697,075
Ensembl chr 8:4,189,257...4,412,183 		JBrowse link
G Gbx1 gastrulation brain homeobox 1 acts_upstream_of_or_within ISO (PMID:23418536) RGD PMID:23418536 NCBI chr 4:11,538,402...11,564,931
Ensembl chr 4:10,645,957...10,672,486 		JBrowse link
G Gdpd5 glycerophosphodiester phosphodiesterase domain containing 5 acts_upstream_of_or_within ISO MGI:5302017 (PMID:21943603) RGD PMID:21943603 NCBI chr 1:163,091,844...163,173,559
Ensembl chr 1:153,679,718...153,761,446 		JBrowse link
G Gigyf2 GRB10 interacting GYF protein 2 acts_upstream_of_or_within ISO MGI:4126459 (PMID:19744960) RGD PMID:19744960 NCBI chr 9:95,449,143...95,574,927
Ensembl chr 9:88,001,301...88,125,715 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509 (PMID:21552265) RGD PMID:21552265 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:107736 (PMID:21552265) RGD PMID:21552265 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Ift172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2682066 (PMID:21552265)		 Ensembl
RGD		 PMID:21552265 GO_REF:0000107 NCBI chr 6:30,801,841...30,841,239
Ensembl chr 6:25,081,980...25,120,860 		JBrowse link
G Ighmbp2 immunoglobulin mu DNA binding protein 2 acts_upstream_of_or_within ISO MGI:1857648 (PMID:19299493) RGD PMID:19299493 NCBI chr 1:209,935,922...209,958,570
Ensembl chr 1:200,506,338...200,529,514 		JBrowse link
G Isl1 ISL LIM homeobox 1 acts_upstream_of_or_within ISO MGI:2182246 (PMID:8565076) RGD PMID:8565076 NCBI chr 2:49,813,618...49,823,442
Ensembl chr 2:48,080,522...48,095,584 		JBrowse link
G Lbx1 ladybird homeobox 1 acts_upstream_of_or_within ISO MGI:2149955 (PMID:15769945) RGD PMID:15769945 NCBI chr 1:254,033,009...254,034,826
Ensembl chr 1:244,083,873...244,085,690 		JBrowse link
G Lmo4 LIM domain only 4 acts_upstream_of_or_within ISO (PMID:19666821) RGD PMID:19666821 NCBI chr 2:235,924,574...235,941,609
Ensembl chr 2:233,264,182...233,280,880 		JBrowse link
G Lonrf2 LON peptidase N-terminal domain and ring finger 2 acts_upstream_of_or_within ISO (PMID:37474791) RGD PMID:37474791 NCBI chr 9:48,524,962...48,566,353
Ensembl chr 9:41,034,628...41,070,649 		JBrowse link
G Mdga2 MAM domain containing glycosylphosphatidylinositol anchor 2 involved_in IEP PMID:15019943 HGNC-UCL PMID:15019943 RGD:8554528 NCBI chr 6:90,482,687...91,346,784
Ensembl chr 6:84,761,941...85,608,126 		JBrowse link
G Mir17 microRNA 17 acts_upstream_of_or_within ISO MGI:2676844|MGI:2676868|MGI:2676872|MGI:3618743|MGI:3619438|MGI:3629917|MGI:3629918|MGI:3790968 (PMID:21338882) RGD PMID:21338882 NCBI chr15:98,587,848...98,587,931
Ensembl chr15:92,180,629...92,180,712 		JBrowse link
G Mir18a microRNA 18a acts_upstream_of_or_within ISO MGI:2676868|MGI:2676872|MGI:3618743|MGI:3619065|MGI:3619438|MGI:3629917|MGI:3629918 (PMID:21338882) RGD PMID:21338882 NCBI chr15:98,587,984...98,588,079
Ensembl chr15:92,180,765...92,180,860 		JBrowse link
G Mir19a microRNA 19a acts_upstream_of_or_within ISO MGI:2676844|MGI:2676872|MGI:3619065|MGI:3629917|MGI:3629918 (PMID:21338882) RGD PMID:21338882 NCBI chr15:98,588,131...98,588,212
Ensembl chr15:92,180,912...92,180,993 		JBrowse link
G Mir19b1 microRNA 19b-1 acts_upstream_of_or_within ISO MGI:2676844|MGI:2676872|MGI:3618743|MGI:3619065|MGI:3629918 (PMID:21741442) RGD PMID:21741442 NCBI chr15:98,588,433...98,588,519
Ensembl chr15:92,181,214...92,181,300 		JBrowse link
G Mir20a microRNA 20a acts_upstream_of_or_within ISO MGI:2676844|MGI:3618743|MGI:3619065|MGI:3629917|MGI:3629918 (PMID:21338882) RGD PMID:21338882 NCBI chr15:98,588,303...98,588,387
Ensembl chr15:92,181,084...92,181,168 		JBrowse link
G Mir92a1 microRNA 92a-1 acts_upstream_of_or_within ISO MGI:2676844|MGI:2676872|MGI:3618743|MGI:3619065|MGI:3629917 (PMID:21338882) RGD PMID:21338882 NCBI chr15:98,588,555...98,588,632
Ensembl chr15:92,181,336...92,181,413 		JBrowse link
G Nfe2l1 NFE2 like bZIP transcription factor 1 acts_upstream_of_or_within ISO MGI:3828165 (PMID:21554501) RGD PMID:21554501 NCBI chr10:82,296,824...82,309,472
Ensembl chr10:81,800,366...81,832,318 		JBrowse link
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within ISO MGI:1932100 (PMID:10217145) RGD PMID:10217145 NCBI chr 3:155,072,621...155,083,699
Ensembl chr 3:134,620,039...134,622,411 		JBrowse link
G Olig2 oligodendrocyte transcription factor 2 acts_upstream_of_or_within ISO MGI:3774124 (PMID:21338882) RGD PMID:21338882 NCBI chr11:43,961,585...43,964,961
Ensembl chr11:30,475,398...30,480,152 		JBrowse link
G Olig3 oligodendrocyte transcription factor 3 acts_upstream_of_or_within ISO MGI:104867|MGI:3573868 (PMID:15674731), (PMID:15769945) RGD PMID:15674731 PMID:15769945 NCBI chr 1:15,900,881...15,902,953
Ensembl chr 1:14,081,328...14,082,149 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO MGI:107736 (PMID:21552265) RGD PMID:21552265 NCBI chr17:1,548,449...1,613,461
Ensembl chr17:1,542,877...1,607,333 		JBrowse link
G Scyl1 SCY1 like pseudokinase 1 acts_upstream_of_or_within ISO MGI:1921385|MGI:5469960 (PMID:29437892) RGD PMID:29437892 NCBI chr 1:212,475,198...212,489,285
Ensembl chr 1:203,045,741...203,059,533 		JBrowse link
G Scyl3 SCY1 like pseudokinase 3 acts_upstream_of_or_within ISO MGI:1931787 (PMID:29437892) RGD PMID:29437892 NCBI chr13:78,811,595...78,836,202
Ensembl chr13:76,278,428...76,301,716 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:107736 (PMID:21552265)		 Ensembl
RGD		 PMID:21552265 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
spinal cord ventral commissure morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adarb1 adenosine deaminase, RNA-specific, B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4840554 (PMID:20826656)		 Ensembl
RGD		 PMID:20826656 GO_REF:0000107 NCBI chr20:11,222,171...11,350,416
Ensembl chr20:11,222,583...11,350,852 		JBrowse link
G Dcc DCC netrin 1 receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1934924 (PMID:9126737)		 Ensembl
RGD		 PMID:9126737 GO_REF:0000107 NCBI chr18:67,144,272...68,248,159
Ensembl chr18:64,873,898...65,972,740 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509 (PMID:10409510) RGD PMID:10409510 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
striatal medium spiny neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b BCL11 transcription factor B acts_upstream_of_or_within ISO MGI:2663971 (PMID:18199763) RGD PMID:18199763 NCBI chr 6:132,598,968...132,692,123
Ensembl chr 6:126,834,531...126,928,224 		JBrowse link
G Inhba inhibin subunit beta A involved_in ISO (PMID:25804741) RGD PMID:25804741 NCBI chr17:53,787,159...53,810,942
Ensembl chr17:49,095,920...49,108,982 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:21423165)
GO_REF:0000024		 Ensembl
RGD
BHF-UCL		 PMID:21423165 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:122,448,323...122,518,623
Ensembl chr 7:120,570,402...120,630,374 		JBrowse link
G Zswim6 zinc finger, SWIM-type containing 6 involved_in ISO (PMID:28433741) RGD PMID:28433741 NCBI chr 2:40,944,617...41,112,340
Ensembl chr 2:39,212,949...39,378,924 		JBrowse link
ventral spinal cord interneuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxn4 forkhead box N4 involved_in ISO (PMID:20844123) RGD PMID:20844123 NCBI chr12:47,997,308...48,020,526
Ensembl chr12:42,340,323...42,359,921 		JBrowse link
G Gata2 GATA binding protein 2 acts_upstream_of_or_within ISO MGI:1857743 (PMID:10934027) RGD PMID:10934027 NCBI chr 4:122,211,501...122,225,058
Ensembl chr 4:120,658,986...120,667,761 		JBrowse link
G Lmo4 LIM domain only 4 acts_upstream_of_or_within ISO (PMID:19666821) RGD PMID:19666821 NCBI chr 2:235,924,574...235,941,609
Ensembl chr 2:233,264,182...233,280,880 		JBrowse link
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:16020526)		 UniProt
RGD		 PMID:16020526 GO_REF:0000024 NCBI chr 7:23,790,642...23,793,509
Ensembl chr 7:21,903,126...21,905,993 		JBrowse link
G Dll4 delta like canonical Notch ligand 4 involved_in ISO
IEA		 UniProtKB:Q8K3Q3 (PMID:17728344)
GO_REF:0000107		 RGD
Ensembl		 PMID:17728344 GO_REF:0000107 NCBI chr 3:126,770,945...126,780,769
Ensembl chr 3:106,316,986...106,326,931 		JBrowse link
G Foxn4 forkhead box N4 involved_in ISO (PMID:16020526), (PMID:17728344) RGD PMID:16020526 PMID:17728344 NCBI chr12:47,997,308...48,020,526
Ensembl chr12:42,340,323...42,359,921 		JBrowse link
ventral spinal cord interneuron fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within ISO MGI:1932100 (PMID:10217145) RGD PMID:10217145 NCBI chr 3:155,072,621...155,083,699
Ensembl chr 3:134,620,039...134,622,411 		JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbx1 developing brain homeobox 1 acts_upstream_of_or_within ISO MGI:2182329 (PMID:11239429) RGD PMID:11239429 NCBI chr 1:108,484,846...108,490,381
Ensembl chr 1:99,349,608...99,354,038 		JBrowse link
G Dmrt3 doublesex and mab-3 related transcription factor 3 acts_upstream_of_or_within ISO MGI:4420993 (PMID:22932389) RGD PMID:22932389 NCBI chr 1:232,670,642...232,690,557
Ensembl chr 1:223,248,747...223,262,530 		JBrowse link
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within ISO (PMID:19666821) RGD PMID:19666821 NCBI chr 3:29,424,620...29,432,637
Ensembl chr 3:9,027,425...9,034,480 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within IDA PMID:9230312 MGI PMID:9230312 RGD:8553789 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Sox1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO MGI:3653406 (PMID:20844123) RGD PMID:20844123 NCBI chr16:83,837,689...83,841,703
Ensembl chr16:77,137,584...77,138,762 		JBrowse link
visceral motor neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isl1 ISL LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:109156 (PMID:14766174)		 Ensembl
RGD		 PMID:14766174 GO_REF:0000107 NCBI chr 2:49,813,618...49,823,442
Ensembl chr 2:48,080,522...48,095,584 		JBrowse link
G Isl2 ISL LIM homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:101791|MGI:3046260 (PMID:14766174)		 Ensembl
RGD		 PMID:14766174 GO_REF:0000107 NCBI chr 8:64,819,879...64,824,864
Ensembl chr 8:55,923,805...55,928,790 		JBrowse link
G Tbx20 T-box transcription factor 20 involved_in ISO (PMID:15843409) RGD PMID:15843409 NCBI chr 8:31,475,963...31,534,051
Ensembl chr 8:23,204,507...23,258,175 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20546
    cellular process 19536
      cellular developmental process 4830
        cell differentiation 4829
          neuron differentiation 1735
            central nervous system neuron differentiation 293
              Lugaro cell differentiation 0
              Rohon-Beard neuron differentiation 0
              amacrine cell differentiation + 17
              candelabrum cell differentiation 0
              central nervous system neuron development + 115
              cerebellar Golgi cell differentiation 0
              cerebellar Purkinje cell differentiation 19
              cerebellar basket cell differentiation 0
              cerebellar granule cell differentiation 12
              cerebellar stellate cell differentiation 0
              cerebellar unipolar brush cell differentiation 0
              commissural neuron differentiation in spinal cord + 1
              eurydendroid cell differentiation 0
              forebrain neuron differentiation + 99
              midbrain dopaminergic neuron differentiation + 13
              pyramidal neuron differentiation + 19
              retrotrapezoid nucleus neuron differentiation 1
              spinal cord association neuron differentiation + 14
              spinal cord motor neuron differentiation + 42
              ventral spinal cord interneuron differentiation + 14
Path 2
Term Annotations click to browse term
  biological_process 20546
    developmental process 7139
      anatomical structure development 6638
        multicellular organism development 5350
          system development 4630
            nervous system development 2868
              neurogenesis 2121
                generation of neurons 1815
                  neuron differentiation 1735
                    central nervous system neuron differentiation 293
                      Lugaro cell differentiation 0
                      Rohon-Beard neuron differentiation 0
                      amacrine cell differentiation + 17
                      candelabrum cell differentiation 0
                      central nervous system neuron development + 115
                      cerebellar Golgi cell differentiation 0
                      cerebellar Purkinje cell differentiation 19
                      cerebellar basket cell differentiation 0
                      cerebellar granule cell differentiation 12
                      cerebellar stellate cell differentiation 0
                      cerebellar unipolar brush cell differentiation 0
                      commissural neuron differentiation in spinal cord + 1
                      eurydendroid cell differentiation 0
                      forebrain neuron differentiation + 99
                      midbrain dopaminergic neuron differentiation + 13
                      pyramidal neuron differentiation + 19
                      retrotrapezoid nucleus neuron differentiation 1
                      spinal cord association neuron differentiation + 14
                      spinal cord motor neuron differentiation + 42
                      ventral spinal cord interneuron differentiation + 14
paths to the root