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ONTOLOGY REPORT - ANNOTATIONS

Term:neural tube development
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Accession:GO:0021915 term browser browse the term
Definition:The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium.


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neural tube development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 involved_in ISO
IEA 		(PMID:16237707)
GO_REF:0000107 		RGD
Ensembl		 PMID:16237707 GO_REF:0000107 NCBI chr 8:80,758,641...80,837,891
Ensembl chr 8:80,758,142...80,837,883 		JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3715977 (PMID:17589504) 		Ensembl
RGD		 PMID:17589504 GO_REF:0000107 NCBI chr 3:98,156,626...98,345,876
Ensembl chr 3:98,156,652...98,345,872 		JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) RGD PMID:19004860 NCBI chr 1:164,127,304...164,225,088
Ensembl chr 1:164,127,281...164,225,086 		JBrowse link
G Cecr2 CECR2, histone acetyl-lysine reader acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3574034 (PMID:22045912) 		Ensembl
RGD		 PMID:22045912 GO_REF:0000107 NCBI chr 4:155,562,576...155,670,253
Ensembl chr 4:155,562,727...155,666,741 		JBrowse link
G Dact1 dishevelled-binding antagonist of beta-catenin 1 involved_in ISO (PMID:22610794) RGD PMID:22610794 NCBI chr 6:95,526,645...95,538,625
Ensembl chr 6:95,526,690...95,551,053 		JBrowse link
G Dchs1 dachsous cadherin-related 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4867020 (PMID:21303848) 		Ensembl
RGD		 PMID:21303848 GO_REF:0000107 NCBI chr 1:169,516,758...169,550,789
Ensembl chr 1:169,516,762...169,536,639 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 involved_in ISO
IEA 		(PMID:8817329)
GO_REF:0000107 		RGD
Ensembl		 PMID:8817329 GO_REF:0000107 NCBI chr 5:171,738,911...171,750,967
Ensembl chr 5:171,739,133...171,750,966 		JBrowse link
G Epha2 Eph receptor A2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2448472 (PMID:11287184) 		Ensembl
RGD		 PMID:11287184 GO_REF:0000107 NCBI chr 5:158,888,629...158,917,100
Ensembl chr 5:158,888,629...158,917,234 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3042750 (PMID:18590716) 		Ensembl
RGD		 PMID:18590716 GO_REF:0000107 NCBI chr16:18,929,581...18,936,621
Ensembl chr16:18,929,582...18,936,543 		JBrowse link
G Gdf7 growth differentiation factor 7 acts_upstream_of_or_within ISO MGI:2386906 (PMID:10693795) RGD PMID:10693795 NCBI chr 6:36,890,799...36,901,783
Ensembl chr 6:36,890,799...36,901,783 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:3834146 (PMID:19056373) RGD PMID:19056373 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:32,499,678...32,716,418 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856276 (PMID:8387379) 		Ensembl
RGD		 PMID:8387379 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:54,134,064...54,405,198 		JBrowse link
G Grhl2 grainyhead-like transcription factor 2 involved_in
acts_upstream_of_or_within 		IBA
ISO
IEA 		GO_REF:0000033
MGI:4942413 (PMID:21377456)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:21377456 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:70,280,360...70,415,277
Ensembl chr 7:70,285,310...70,415,274 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:104876|MGI:104877 (PMID:10804175), (PMID:11500373) 		Ensembl
RGD		 PMID:10804175 PMID:11500373 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:84,210,633...84,213,061 		JBrowse link
G Hes3 hes family bHLH transcription factor 3 acts_upstream_of_or_within ISO MGI:104853 (PMID:11500373) RGD PMID:11500373 NCBI chr 5:168,076,337...168,082,270
Ensembl chr 5:168,077,093...168,078,987 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
MGI:104853 (PMID:10804175) 		UniProt
RGD		 PMID:10804175 GO_REF:0000024 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:170,803,940...170,806,021 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2176180|MGI:4420980 (PMID:19521792) 		Ensembl
RGD		 PMID:19521792 GO_REF:0000107 NCBI chr 6:30,801,841...30,841,239
Ensembl chr 6:30,801,918...30,840,830 		JBrowse link
G Inka1 inka box actin regulator 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4438483 (PMID:20175189) 		Ensembl
RGD		 PMID:20175189 GO_REF:0000107 NCBI chr 8:117,552,875...117,554,565
Ensembl chr 8:117,552,875...117,554,565 		JBrowse link
G Intu inturned planar cell polarity protein acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:25774014) 		Ensembl
RGD		 PMID:25774014 GO_REF:0000107 NCBI chr 2:125,528,965...125,613,295
Ensembl chr 2:125,529,208...125,613,295 		JBrowse link
G Itpk1 inositol-tetrakisphosphate 1-kinase acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3587933 (PMID:19482943) 		Ensembl
RGD		 PMID:19482943 GO_REF:0000107 NCBI chr 6:127,475,589...127,609,320
Ensembl chr 6:127,476,808...127,609,062 		JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in IEA
ISO 		GO_REF:0000107
(PMID:30655546) 		Ensembl
RGD		 PMID:30655546 GO_REF:0000107 NCBI chr 1:212,325,089...212,332,640
Ensembl chr 1:212,325,090...212,332,587 		JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4126347|MGI:5516011 (PMID:23028370) 		Ensembl
RGD		 PMID:23028370 GO_REF:0000107 NCBI chr  X:6,920,374...7,060,027
Ensembl chr  X:6,920,343...7,059,960 		JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:2181727 (PMID:10330409) RGD PMID:10330409 NCBI chr10:38,226,388...38,263,062
Ensembl chr10:38,226,741...38,260,516 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98958 (PMID:19795512) RGD PMID:19795512 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:169,000,968...169,131,716 		JBrowse link
G Marcks myristoylated alanine rich protein kinase C substrate involved_in IEA
ISO 		GO_REF:0000107
(PMID:30655546) 		Ensembl
RGD		 PMID:30655546 GO_REF:0000107 NCBI chr20:42,240,185...42,245,882
Ensembl chr20:42,240,185...42,245,882 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4839485 (PMID:20589884) 		Ensembl
RGD		 PMID:20589884 GO_REF:0000107 NCBI chr  X:70,444,615...70,467,780
Ensembl chr  X:70,444,705...70,467,708 		JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:97487 (PMID:10419687) 		Ensembl
RGD		 PMID:10419687 GO_REF:0000107 NCBI chr10:64,803,986...65,037,086
Ensembl chr10:64,804,266...65,034,946 		JBrowse link
G Nog noggin acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1862000 (PMID:9585504) 		Ensembl
RGD		 PMID:9585504 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,625,875...74,628,103 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857230 (PMID:7789282) 		Ensembl
RGD		 PMID:7789282 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:29,676,171...29,721,613 		JBrowse link
G Nup133 nucleoporin 133 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3578539 (PMID:18539113) 		Ensembl
RGD		 PMID:18539113 GO_REF:0000107 NCBI chr19:68,789,065...68,838,692
Ensembl chr19:68,789,065...68,838,692 		JBrowse link
G Pax3 paired box 3 involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000117
MGI:97306 (PMID:10419687) 		UniProt
RGD		 PMID:10419687 GO_REF:0000117 NCBI chr 9:87,015,960...87,112,531
Ensembl chr 9:87,016,999...87,124,141 		JBrowse link
G Pax7 paired box 7 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 5:157,279,623...157,381,188
Ensembl chr 5:157,279,623...157,381,121 		JBrowse link
G Phgdh phosphoglycerate dehydrogenase acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3769591 (PMID:19114063) 		Ensembl
RGD		 PMID:19114063 GO_REF:0000107 NCBI chr 2:188,595,700...188,624,789
Ensembl chr 2:188,595,700...188,624,789 		JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in ISO
IEA 		(PMID:11891195)
GO_REF:0000107 		RGD
Ensembl		 PMID:11891195 GO_REF:0000107 NCBI chr10:14,077,733...14,125,682
Ensembl chr10:14,078,679...14,125,681 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:11891195) RGD PMID:11891195 NCBI chr14:5,541,821...5,585,140
Ensembl chr14:5,495,401...5,587,594 		JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3620600|MGI:3620601 (PMID:16467571) 		Ensembl
RGD		 PMID:16467571 GO_REF:0000107 NCBI chr12:25,313,070...25,323,631
Ensembl chr12:25,313,072...25,323,631 		JBrowse link
G Plxna2 plexin A2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:19666519) 		Ensembl
RGD		 PMID:19666519 GO_REF:0000107 NCBI chr13:108,683,155...108,888,336
Ensembl chr13:108,691,530...108,887,453 		JBrowse link
G Sall1 spalt-like transcription factor 1 acts_upstream_of_or_within ISO MGI:2139360 (PMID:18818376) RGD PMID:18818376 NCBI chr19:34,179,316...34,196,278
Ensembl chr19:34,181,078...34,196,278 		JBrowse link
G Sall2 spalt-like transcription factor 2 acts_upstream_of_or_within ISO MGI:3828110 (PMID:18818376) RGD PMID:18818376 NCBI chr15:27,494,831...27,512,402
Ensembl chr15:27,494,589...27,512,402 		JBrowse link
G Sall4 spalt-like transcription factor 4 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1354373|MGI:1889585 (PMID:18818376) 		Ensembl
RGD		 PMID:18818376 GO_REF:0000107 NCBI chr 3:177,891,705...177,909,743
Ensembl chr 3:177,891,705...177,909,743 		JBrowse link
G Sema3c semaphorin 3C involved_in IEA
ISO 		GO_REF:0000107
(PMID:19666519) 		Ensembl
RGD		 PMID:19666519 GO_REF:0000107 NCBI chr 4:18,538,452...18,702,453
Ensembl chr 4:18,538,454...18,701,740 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:108078 (PMID:19850029) 		Ensembl
RGD		 PMID:19850029 GO_REF:0000107 NCBI chr16:75,278,325...75,316,736
Ensembl chr16:75,278,325...75,316,736 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:892014 (PMID:19850029) 		Ensembl
RGD		 PMID:19850029 GO_REF:0000107 NCBI chr 2:171,387,536...171,395,081
Ensembl chr 2:171,387,385...171,395,079 		JBrowse link
G Stil STIL, centriolar assembly protein acts_upstream_of_or_within ISO MGI:2152962 (PMID:10385121) RGD PMID:10385121 NCBI chr 5:133,757,598...133,810,493
Ensembl chr 5:133,760,417...133,810,494 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4440463 (PMID:20159594) 		Ensembl
RGD		 PMID:20159594 GO_REF:0000107 NCBI chr20:35,902,281...36,133,161
Ensembl chr20:35,902,700...36,133,057 		JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO MGI:1202879 (PMID:15057272) RGD PMID:15057272 NCBI chr10:36,924,363...36,954,279
Ensembl chr10:36,924,363...36,954,279 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO MGI:98507 (PMID:15057272) RGD PMID:15057272 NCBI chr 1:264,791,335...264,984,225
Ensembl chr 1:264,791,335...264,984,225 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:7600998) 		Ensembl
RGD		 PMID:7600998 GO_REF:0000107 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:90,324,046...90,340,899 		JBrowse link
G Trim71 tripartite motif containing 71 involved_in ISS
ISO 		GO_REF:0000024
(PMID:22508726) 		UniProt
RGD		 PMID:22508726 GO_REF:0000024 NCBI chr 8:123,076,499...123,129,016 JBrowse link
G Ttbk2 tau tubulin kinase 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:5496675 (PMID:23141541) 		Ensembl
RGD		 PMID:23141541 GO_REF:0000107 NCBI chr 3:128,144,851...128,256,630
Ensembl chr 3:128,144,851...128,258,738 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2388066 (PMID:19286674) 		Ensembl
RGD		 PMID:19286674 GO_REF:0000107 NCBI chr 4:163,276,583...163,318,297
Ensembl chr 4:163,276,583...163,318,390 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1298218 (PMID:19795512) 		Ensembl
RGD		 PMID:19795512 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,703,665...3,724,860 		JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 acts_upstream_of_or_within ISO MGI:3050540 (PMID:15226444) RGD PMID:15226444 NCBI chr 6:104,663,396...104,669,815
Ensembl chr 6:104,663,399...104,687,979 		JBrowse link
anterior neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp3 caspase 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:5056374 (PMID:21515572) 		Ensembl
RGD		 PMID:21515572 GO_REF:0000107 NCBI chr16:52,395,539...52,413,794
Ensembl chr16:52,395,540...52,413,732 		JBrowse link
G Folr1 folate receptor alpha involved_in IEA
ISO 		GO_REF:0000107
(PMID:17286298) 		Ensembl
RGD		 PMID:17286298 GO_REF:0000107 NCBI chr 1:165,631,462...165,650,430
Ensembl chr 1:165,631,462...165,642,669 		JBrowse link
G Grhl2 grainyhead-like transcription factor 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:5056365 (PMID:21515572) 		Ensembl
RGD		 PMID:21515572 GO_REF:0000107 NCBI chr 7:70,280,360...70,415,277
Ensembl chr 7:70,285,310...70,415,274 		JBrowse link
G Specc1l sperm antigen with calponin homology and coiled-coil domains 1-like acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4124253|MGI:4128888 (PMID:26787558) 		Ensembl
RGD		 PMID:26787558 GO_REF:0000107 NCBI chr20:13,337,399...13,443,080
Ensembl chr20:13,339,108...13,443,079 		JBrowse link
anterior neuropore closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (PMID:17565372) RGD PMID:17565372 NCBI chr16:19,463,500...19,553,497
Ensembl chr16:19,463,500...19,553,497 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:1888387 (PMID:8622765) RGD PMID:8622765 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,229,910...24,253,219 		JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:15218525) 		Ensembl
RGD		 PMID:15218525 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:22,098,470...22,105,172 		JBrowse link
G Cdk20 cyclin-dependent kinase 20 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:706,863...717,828
Ensembl chr17:706,865...713,567 		JBrowse link
G Cplane2 ciliogenesis and planar polarity effector complex subunit 2 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 5:158,798,503...158,799,451
Ensembl chr 5:158,798,287...158,804,132 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:107689|MGI:3042750|MGI:3775614|MGI:95728 (PMID:18003640), (PMID:18590716) 		Ensembl
RGD		 PMID:18003640 PMID:18590716 GO_REF:0000107 NCBI chr16:18,929,581...18,936,621
Ensembl chr16:18,929,582...18,936,543 		JBrowse link
G Foxa1 forkhead box A1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1347476 (PMID:23383217) 		Ensembl
RGD		 PMID:23383217 GO_REF:0000107 NCBI chr 6:80,838,380...80,871,195
Ensembl chr 6:80,800,960...80,871,191 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:1347472|MGI:95841 (PMID:18590716), (PMID:23383217), (PMID:9226455) RGD PMID:9226455 PMID:18590716 PMID:23383217 NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:155,923,307...155,928,757 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:3711070|MGI:98297 (PMID:17504940), (PMID:17504941) RGD PMID:17504940 PMID:17504941 NCBI chr17:4,487,716...4,490,701
Ensembl chr17:4,484,283...4,497,657 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509 (PMID:18590716), (PMID:19286674)
(PMID:9247260) 		RGD PMID:9247260 PMID:18590716 PMID:19286674 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:32,499,678...32,716,418 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:54,134,064...54,405,198 		JBrowse link
G Gorab golgin, RAB6-interacting acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr13:78,278,868...78,295,490
Ensembl chr13:78,278,871...78,295,488 		JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1347476 (PMID:9226455) 		Ensembl
RGD		 PMID:9226455 GO_REF:0000107 NCBI chr 6:129,152,836...129,154,875
Ensembl chr 6:129,152,836...129,154,875 		JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within
involved_in 		ISO MGI:1341070|MGI:1861960|MGI:95728 (PMID:18590716), (PMID:19286674)
(PMID:21209331) 		RGD PMID:18590716 PMID:19286674 PMID:21209331 NCBI chr10:38,226,388...38,263,062
Ensembl chr10:38,226,741...38,260,516 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr10:73,152,599...73,167,451
Ensembl chr10:73,153,186...73,163,886 		JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (PMID:18590716) RGD PMID:18590716 NCBI chr 4:6,541,645...6,546,604
Ensembl chr 4:6,541,645...6,546,604 		JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:18590716) 		Ensembl
RGD		 PMID:18590716 GO_REF:0000107 NCBI chr 5:157,279,623...157,381,188
Ensembl chr 5:157,279,623...157,381,121 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr19:41,059,843...41,083,189
Ensembl chr19:41,059,843...41,086,494 		JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:238,297,140...238,389,317
Ensembl chr 2:238,300,127...238,386,315 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:109284 (PMID:10557208) 		Ensembl
RGD		 PMID:10557208 GO_REF:0000107 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:109,060,352...109,106,189 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO MGI:1202717 (PMID:10557208) RGD PMID:10557208 NCBI chr13:94,499,451...94,528,419
Ensembl chr13:94,499,928...94,525,116 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857447 (PMID:9262482) 		Ensembl
RGD		 PMID:9262482 GO_REF:0000107 NCBI chr17:1,548,449...1,613,461
Ensembl chr17:1,548,449...1,613,461 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO (PMID:7720556) RGD PMID:7720556 NCBI chr 9:43,440,047...43,463,327
Ensembl chr 9:43,440,273...43,463,325 		JBrowse link
G Rnf220 ring finger protein 220 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:6393918 (PMID:30177510) 		Ensembl
RGD		 PMID:30177510 GO_REF:0000107 NCBI chr 5:135,975,739...136,198,017
Ensembl chr 5:135,975,739...136,197,858 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
MGI:95655 (PMID:17442700), (PMID:17504941), (PMID:18590716)
(PMID:21209331) 		Ensembl
RGD		 PMID:17442700 PMID:17504941 PMID:18590716 PMID:21209331 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:7,687,846...7,697,901 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2176255 (PMID:18590716) 		Ensembl
RGD		 PMID:18590716 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:59,311,041...59,341,281 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:255,199,108...255,296,983
Ensembl chr 1:255,199,164...255,296,981 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:35,902,281...36,133,161
Ensembl chr20:35,902,700...36,133,057 		JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3716885 (PMID:16357211) 		Ensembl
RGD		 PMID:16357211 GO_REF:0000107 NCBI chr12:39,970,554...40,003,727
Ensembl chr12:39,970,621...40,003,725 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr12:37,713,522...37,722,606
Ensembl chr12:37,713,529...37,722,606 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 9:99,521,176...99,557,966
Ensembl chr 9:99,521,179...99,557,963 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2388066 (PMID:19286674) 		Ensembl
RGD		 PMID:19286674 GO_REF:0000107 NCBI chr 4:163,276,583...163,318,297
Ensembl chr 4:163,276,583...163,318,390 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr14:43,396,130...43,460,012
Ensembl chr14:43,397,835...43,459,939 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857489 (PMID:8299937) 		Ensembl
RGD		 PMID:8299937 GO_REF:0000107 NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,533,734...44,577,919 		JBrowse link
establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1915838 (PMID:18606138) 		Ensembl
RGD		 PMID:18606138 GO_REF:0000107 NCBI chr 7:72,007,372...72,017,654
Ensembl chr 7:72,007,372...72,017,654 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857642 (PMID:18606138) 		Ensembl
RGD		 PMID:18606138 GO_REF:0000107 NCBI chr13:86,995,124...87,021,770
Ensembl chr13:86,997,920...87,021,770 		JBrowse link
floor plate development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cby1 chibby 1, beta catenin antagonist acts_upstream_of_or_within ISO MGI:1919757 (PMID:29487109) RGD PMID:29487109 NCBI chr 7:113,097,220...113,103,831 JBrowse link
G Cobl cordon-bleu WH2 repeat protein involved_in IEA
ISO 		GO_REF:0000107
(PMID:7586755) 		Ensembl
RGD		 PMID:7586755 GO_REF:0000107 NCBI chr14:91,041,721...91,274,272
Ensembl chr14:91,041,721...91,274,257 		JBrowse link
G Dzip1l DAZ interacting zinc finger protein 1-like acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1920989 (PMID:29487109) 		Ensembl
RGD		 PMID:29487109 GO_REF:0000107 NCBI chr 8:109,067,466...109,108,390
Ensembl chr 8:109,067,775...109,108,393 		JBrowse link
G Ferd3l Fer3-like bHLH transcription factor acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4460989 (PMID:20460368) 		Ensembl
RGD		 PMID:20460368 GO_REF:0000107 NCBI chr 6:56,372,778...56,373,667
Ensembl chr 6:56,372,479...56,373,501 		JBrowse link
G Foxb1 forkhead box B1 involved_in ISO (PMID:18064677) RGD PMID:18064677 NCBI chr 8:79,288,161...79,290,781
Ensembl chr 8:79,287,616...79,291,490 		JBrowse link
G Stil STIL, centriolar assembly protein acts_upstream_of_or_within ISO MGI:2152962 (PMID:10385121) RGD PMID:10385121 NCBI chr 5:133,757,598...133,810,493
Ensembl chr 5:133,760,417...133,810,494 		JBrowse link
floor plate formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk20 cyclin-dependent kinase 20 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:6113512 (PMID:28817564) 		Ensembl
RGD		 PMID:28817564 GO_REF:0000107 NCBI chr17:706,863...717,828
Ensembl chr17:706,865...713,567 		JBrowse link
G Cluap1 clusterin associated protein 1 acts_upstream_of_or_within ISO MGI:4363468 (PMID:23351563) RGD PMID:23351563 NCBI chr10:12,094,346...12,159,440
Ensembl chr10:12,094,346...12,131,693 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509 (PMID:9636069)
MGI:1857509 (PMID:9655799) 		RGD PMID:9636069 PMID:9655799 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:32,499,678...32,716,418 		JBrowse link
floor plate morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2158732 (PMID:11311163) 		Ensembl
RGD		 PMID:11311163 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,911,258...29,919,659 		JBrowse link
forebrain-midbrain boundary formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax6 paired box 6 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856155|MGI:1856158 (PMID:9169845) 		Ensembl
RGD		 PMID:9169845 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:112,590,391...112,611,763 		JBrowse link
initiation of neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm2b lysine demethylase 2B involved_in ISO (PMID:21220025) RGD PMID:21220025 NCBI chr12:39,224,422...39,362,126
Ensembl chr12:39,235,301...39,362,127 		JBrowse link
midbrain-hindbrain boundary development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G En1 engrailed homeobox 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857163 (PMID:15607945) 		Ensembl
RGD		 PMID:15607945 GO_REF:0000107 NCBI chr13:34,303,684...34,309,269
Ensembl chr13:34,303,702...34,309,269 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2150347 (PMID:17601531) 		Ensembl
RGD		 PMID:17601531 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:254,533,504...254,539,605 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857634 (PMID:16651541) 		Ensembl
RGD		 PMID:16651541 GO_REF:0000107 NCBI chr 9:97,957,304...97,959,883
Ensembl chr 9:97,957,304...97,959,883 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191 (PMID:11029008), (PMID:19795512) RGD PMID:11029008 PMID:19795512 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:169,000,968...169,131,716 		JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857490 (PMID:2205396) 		Ensembl
RGD		 PMID:2205396 GO_REF:0000107 NCBI chr 7:131,817,558...131,821,605
Ensembl chr 7:131,817,558...131,821,605 		JBrowse link
midbrain-hindbrain boundary initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssbp3 single stranded DNA binding protein 3 involved_in IEA
ISO 		GO_REF:0000107
(PMID:15857913) 		Ensembl
RGD		 PMID:15857913 GO_REF:0000107 NCBI chr 5:126,920,145...127,057,968
Ensembl chr 5:126,919,120...127,056,799 		JBrowse link
midbrain-hindbrain boundary maturation during brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt1 Wnt family member 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856382 (PMID:8555108) 		Ensembl
RGD		 PMID:8555108 GO_REF:0000107 NCBI chr 7:131,817,558...131,821,605
Ensembl chr 7:131,817,558...131,821,605 		JBrowse link
midbrain-hindbrain boundary morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857634 (PMID:16651541) 		Ensembl
RGD		 PMID:16651541 GO_REF:0000107 NCBI chr 9:97,957,304...97,959,883
Ensembl chr 9:97,957,304...97,959,883 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:104877 (PMID:11500373) 		Ensembl
RGD		 PMID:11500373 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:84,210,633...84,213,061 		JBrowse link
G Hes3 hes family bHLH transcription factor 3 acts_upstream_of_or_within ISO MGI:104853 (PMID:11522634) RGD PMID:11522634 NCBI chr 5:168,076,337...168,082,270
Ensembl chr 5:168,077,093...168,078,987 		JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (PMID:21220025) RGD PMID:21220025 NCBI chr12:39,224,422...39,362,126
Ensembl chr12:39,235,301...39,362,127 		JBrowse link
negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr161 G protein-coupled receptor 161 involved_in ISO (PMID:23332756) RGD PMID:23332756 NCBI chr13:80,111,271...80,156,517
Ensembl chr13:80,117,114...80,152,861 		JBrowse link
neural fold bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Luzp1 leucine zipper protein 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3818454 (PMID:18801334) 		Ensembl
RGD		 PMID:18801334 GO_REF:0000107 NCBI chr 5:153,989,570...154,065,071
Ensembl chr 5:153,987,683...154,070,438 		JBrowse link
neural fold elevation formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp5 bone morphogenetic protein 5 involved_in IEA
ISO 		GO_REF:0000107
UniProtKB:P23359 (PMID:10079236) 		Ensembl
RGD		 PMID:10079236 GO_REF:0000107 NCBI chr 8:85,397,629...85,520,374
Ensembl chr 8:85,396,925...85,520,189 		JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in IEA
ISO 		GO_REF:0000107
UniProtKB:P49003 (PMID:10079236) 		Ensembl
RGD		 PMID:10079236 GO_REF:0000107 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:182,052,337...182,135,137 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857719 (PMID:10328919) 		Ensembl
RGD		 PMID:10328919 GO_REF:0000107 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:98,359,910...98,405,323 		JBrowse link
neural fold formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cecr2 CECR2, histone acetyl-lysine reader acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3574034 (PMID:21246654) 		Ensembl
RGD		 PMID:21246654 GO_REF:0000107 NCBI chr 4:155,562,576...155,670,253
Ensembl chr 4:155,562,727...155,666,741 		JBrowse link
G Cfl1 cofilin 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3574399 (PMID:15649475) 		Ensembl
RGD		 PMID:15649475 GO_REF:0000107 NCBI chr 1:212,227,124...212,230,656
Ensembl chr 1:212,226,121...212,231,353 		JBrowse link
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (PMID:17565372) RGD PMID:17565372 NCBI chr16:19,463,500...19,553,497
Ensembl chr16:19,463,500...19,553,497 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2158732 (PMID:11311163) 		Ensembl
RGD		 PMID:11311163 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,911,258...29,919,659 		JBrowse link
G Ovol2 ovo-like zinc finger 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3522498 (PMID:16423343) 		Ensembl
RGD		 PMID:16423343 GO_REF:0000107 NCBI chr 3:152,130,767...152,160,487
Ensembl chr 3:152,130,767...152,160,487 		JBrowse link
neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
MGI:87860 (PMID:9883720)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:9883720 GO_REF:0000107 GO_REF:0000117 NCBI chr 3:35,377,587...35,480,843
Ensembl chr 3:35,377,391...35,480,846 		JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000117
MGI:87859 (PMID:9883720) 		UniProt
RGD		 PMID:9883720 GO_REF:0000117 NCBI chr13:71,223,902...71,319,770
Ensembl chr13:71,224,019...71,389,775 		JBrowse link
G Adm adrenomedullin acts_upstream_of_or_within ISO MGI:2176598 (PMID:16981008) RGD PMID:16981008 NCBI chr 1:174,164,178...174,182,372
Ensembl chr 1:174,178,773...174,182,371 		JBrowse link
G Alx1 ALX homeobox 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857553 (PMID:8673125) 		Ensembl
RGD		 PMID:8673125 GO_REF:0000107 NCBI chr 7:40,044,185...40,063,778
Ensembl chr 7:40,033,676...40,063,778 		JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1888997 (PMID:11504943), (PMID:9216040) 		Ensembl
RGD		 PMID:9216040 PMID:11504943 GO_REF:0000107 NCBI chr 7:27,381,392...27,466,772
Ensembl chr 7:27,381,855...27,466,772 		JBrowse link
G Arhgap35 Rho GTPase activating protein 35 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2448591 (PMID:11044403) 		Ensembl
RGD		 PMID:11044403 GO_REF:0000107 NCBI chr 1:86,330,566...86,447,414
Ensembl chr 1:86,330,566...86,447,414 		JBrowse link
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO MGI:5469314 (PMID:23129809) RGD PMID:23129809 NCBI chr 5:151,192,014...151,269,291
Ensembl chr 5:151,192,014...151,265,386 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3055492 (PMID:16170314) 		Ensembl
RGD		 PMID:16170314 GO_REF:0000107 NCBI chr 8:68,627,739...68,661,232
Ensembl chr 8:68,627,656...68,661,358 		JBrowse link
G Bcl10 BCL10, immune signaling adaptor involved_in ISS
ISO
IEA 		PMID:11163238
(PMID:11163238)
GO_REF:0000107 		RGD
Ensembl		 PMID:11163238 PMID:11163238 GO_REF:0000107, RGD:734638 NCBI chr 2:237,501,181...237,510,821
Ensembl chr 2:237,501,134...237,511,829 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:19850029) 		Ensembl
RGD		 PMID:19850029 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:22,098,470...22,105,172 		JBrowse link
G Brd2 bromodomain containing 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3840071 (PMID:19362612) 		Ensembl
RGD		 PMID:19362612 GO_REF:0000107 NCBI chr20:4,728,282...4,737,286
Ensembl chr20:4,728,951...4,737,290 		JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:5708063 (PMID:24947469) 		Ensembl
RGD		 PMID:24947469 GO_REF:0000107 NCBI chr14:71,563,835...71,648,352
Ensembl chr14:71,563,835...71,648,331 		JBrowse link
G Cdk20 cyclin-dependent kinase 20 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:6113512 (PMID:28817564) 		Ensembl
RGD		 PMID:28817564 GO_REF:0000107 NCBI chr17:706,863...717,828
Ensembl chr17:706,865...713,567 		JBrowse link
G Cecr2 CECR2, histone acetyl-lysine reader acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2135272|MGI:3574034|MGI:4829945 (PMID:15640247), (PMID:20589882), (PMID:21246654) 		Ensembl
RGD		 PMID:15640247 PMID:20589882 PMID:21246654 GO_REF:0000107 NCBI chr 4:155,562,576...155,670,253
Ensembl chr 4:155,562,727...155,666,741 		JBrowse link
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within
involved_in 		ISO MGI:107926|MGI:2135272 (PMID:17229766)
(PMID:12842012) 		RGD PMID:12842012 PMID:17229766 NCBI chr 7:118,867,450...119,004,859
Ensembl chr 7:118,867,450...119,004,856 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2385355 (PMID:12149478) RGD PMID:12149478 NCBI chr 1:14,132,303...14,134,746
Ensembl chr 1:14,103,457...14,134,782 		JBrowse link
G Cluap1 clusterin associated protein 1 acts_upstream_of_or_within ISO MGI:5523142 (PMID:23742838) RGD PMID:23742838 NCBI chr10:12,094,346...12,159,440
Ensembl chr10:12,094,346...12,131,693 		JBrowse link
G Cobl cordon-bleu WH2 repeat protein acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2135272 (PMID:14512015) 		Ensembl
RGD		 PMID:14512015 GO_REF:0000107 NCBI chr14:91,041,721...91,274,272
Ensembl chr14:91,041,721...91,274,257 		JBrowse link
G Deaf1 DEAF1 transcription factor involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:14966286)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:14966286 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:205,831,428...205,865,106
Ensembl chr 1:205,831,336...205,865,106 		JBrowse link
G Dlc1 DLC1 Rho GTPase activating protein acts_upstream_of_or_within ISO MGI:3529997 (PMID:15710412) RGD PMID:15710412 NCBI chr16:61,954,177...62,374,819
Ensembl chr16:61,995,001...62,374,819 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2429760 (PMID:12421720) 		Ensembl
RGD		 PMID:12421720 GO_REF:0000107 NCBI chr10:55,222,245...55,231,506
Ensembl chr10:55,222,056...55,231,506 		JBrowse link
G Enah ENAH, actin regulator involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000117
MGI:109268|MGI:97549 (PMID:10069337), (PMID:15371503) 		UniProt
RGD		 PMID:10069337 PMID:15371503 GO_REF:0000117 NCBI chr13:96,149,437...96,269,841
Ensembl chr13:96,149,437...96,269,796 		JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in
acts_upstream_of_or_within 		ISO
IEA
ISS 		(PMID:21840926)
MGI:4346364 (PMID:19877275)
(PMID:19767740), (PMID:21840926)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:19767740 PMID:19877275 PMID:21840926 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:104,515,782...104,524,591
Ensembl chr 1:104,516,049...104,521,038 		JBrowse link
G Fzd3 frizzled class receptor 3 acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
MGI:108474 (PMID:16495441)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:16495441 GO_REF:0000107 GO_REF:0000117 NCBI chr15:43,596,962...43,664,047
Ensembl chr15:43,596,965...43,663,960 		JBrowse link
G Fzd6 frizzled class receptor 6 acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
MGI:108476 (PMID:16495441)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:16495441 GO_REF:0000107 GO_REF:0000117 NCBI chr 7:71,939,916...71,971,685
Ensembl chr 7:71,939,973...71,971,680 		JBrowse link
G Glmn glomulin, FKBP associated protein acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3817643 (PMID:22405651) 		Ensembl
RGD		 PMID:22405651 GO_REF:0000107 NCBI chr14:2,332,052...2,375,366
Ensembl chr14:2,332,497...2,375,695 		JBrowse link
G Grhl2 grainyhead-like transcription factor 2 acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
MGI:4331210 (PMID:21262862)
(PMID:20654612), (PMID:20978075) 		Ensembl
RGD		 PMID:20654612 PMID:20978075 PMID:21262862 GO_REF:0000107 NCBI chr 7:70,280,360...70,415,277
Ensembl chr 7:70,285,310...70,415,274 		JBrowse link
G Grhl3 grainyhead-like transcription factor 3 involved_in IEA
ISO 		GO_REF:0000107
(PMID:16949565), (PMID:20654612) 		Ensembl
RGD		 PMID:16949565 PMID:20654612 GO_REF:0000107 NCBI chr 5:153,057,760...153,089,890
Ensembl chr 5:153,057,760...153,089,890 		JBrowse link
G Hectd1 HECT domain E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within 		ISO (PMID:17442300)
MGI:2137552 (PMID:15755804), (PMID:9636176) 		RGD PMID:9636176 PMID:15755804 PMID:17442300 NCBI chr 6:74,916,803...75,003,408
Ensembl chr 6:74,916,803...75,003,408 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:19000668) RGD PMID:19000668 NCBI chr 4:150,577,525...150,648,052
Ensembl chr 4:150,539,786...150,648,052 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3829198 (PMID:18930042) 		Ensembl
RGD		 PMID:18930042 GO_REF:0000107 NCBI chr 6:30,801,841...30,841,239
Ensembl chr 6:30,801,918...30,840,830 		JBrowse link
G Ift57 intraflagellar transport 57 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3707373 (PMID:17027958) 		Ensembl
RGD		 PMID:17027958 GO_REF:0000107 NCBI chr11:64,528,349...64,593,545
Ensembl chr11:64,528,349...64,593,545 		JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3711317 (PMID:17325035) 		Ensembl
RGD		 PMID:17325035 GO_REF:0000107 NCBI chr10:86,132,535...86,140,877
Ensembl chr10:86,132,535...86,140,485 		JBrowse link
G Kdm2a lysine demethylase 2A involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000117
(PMID:25463925) 		UniProt
RGD		 PMID:25463925 GO_REF:0000117 NCBI chr 1:211,041,859...211,125,749
Ensembl chr 1:211,041,885...211,084,479 		JBrowse link
G Kdm2b lysine demethylase 2B involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr12:39,224,422...39,362,126
Ensembl chr12:39,235,301...39,362,127 		JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:5448825 (PMID:22949634) 		Ensembl
RGD		 PMID:22949634 GO_REF:0000107 NCBI chr  X:6,920,374...7,060,027
Ensembl chr  X:6,920,343...7,059,960 		JBrowse link
G Kif20b kinesin family member 20B acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3578531 (PMID:15755804) 		Ensembl
RGD		 PMID:15755804 GO_REF:0000107 NCBI chr 1:241,840,898...241,896,451
Ensembl chr 1:241,840,987...241,896,451 		JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1890208 (PMID:11719201) 		Ensembl
RGD		 PMID:11719201 GO_REF:0000107 NCBI chr 3:42,523,345...42,553,646
Ensembl chr 3:42,535,744...42,553,645 		JBrowse link
G Lias lipoic acid synthetase acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3578174 (PMID:15755804) 		Ensembl
RGD		 PMID:15755804 GO_REF:0000107 NCBI chr14:43,230,369...43,247,469
Ensembl chr14:43,230,375...43,247,423 		JBrowse link
G Lmo4 LIM domain only 4 acts_upstream_of_or_within
involved_in 		ISO MGI:3035827|MGI:3574586 (PMID:14966285), (PMID:15691703)
(PMID:16949565) 		RGD PMID:14966285 PMID:15691703 PMID:16949565 NCBI chr 2:235,924,574...235,941,609
Ensembl chr 2:235,924,403...235,941,275 		JBrowse link
G Lrp2 LDL receptor related protein 2 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:24639464)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:24639464 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:74,597,148...74,754,535
Ensembl chr 3:74,597,148...74,754,535 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1861309|MGI:2673982|MGI:4415718|MGI:98958 (PMID:10545599), (PMID:15469977), (PMID:19653321), (PMID:19795512) RGD PMID:10545599 PMID:15469977 PMID:19653321 PMID:19795512 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:169,000,968...169,131,716 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4839484 (PMID:20630950) 		Ensembl
RGD		 PMID:20630950 GO_REF:0000107 NCBI chr  X:70,444,615...70,467,780
Ensembl chr  X:70,444,705...70,467,708 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4410614|MGI:4433029 (PMID:19776033), (PMID:23454480) 		Ensembl
RGD		 PMID:19776033 PMID:23454480 GO_REF:0000107 NCBI chr10:73,152,599...73,167,451
Ensembl chr10:73,153,186...73,163,886 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in IEA
ISO 		GO_REF:0000117
(PMID:23704330) 		UniProt
RGD		 PMID:23704330 GO_REF:0000117 NCBI chr 6:100,713,510...100,781,013
Ensembl chr 6:100,713,681...100,781,957 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like involved_in IEA
ISO 		GO_REF:0000107
(PMID:23267094)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:23267094 GO_REF:0000107 GO_REF:0000117 NCBI chr 1:42,849,424...43,038,313
Ensembl chr 1:42,849,374...43,038,309 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase acts_upstream_of ISO
IEA 		(PMID:25855017), (PMID:29222906)
GO_REF:0000107 		RGD
Ensembl		 PMID:25855017 PMID:29222906 GO_REF:0000107 NCBI chr 5:163,748,346...163,768,141
Ensembl chr 5:163,748,321...163,768,105 		JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3578145 (PMID:16831833) 		Ensembl
RGD		 PMID:16831833 GO_REF:0000107 NCBI chr 3:85,824,333...85,898,748
Ensembl chr 3:85,824,336...85,898,797 		JBrowse link
G Nog noggin acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856173|MGI:1862000 (PMID:16712836) 		Ensembl
RGD		 PMID:16712836 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,625,875...74,628,103 		JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3578528 (PMID:15755804) 		Ensembl
RGD		 PMID:15755804 GO_REF:0000107 NCBI chr11:84,612,943...84,690,025
Ensembl chr11:84,615,340...84,689,955 		JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO 		GO_REF:0000024
(PMID:8951055) 		UniProt
RGD		 PMID:8951055 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:253,555,418...253,645,438 		JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:3043030 (PMID:15384171) RGD PMID:15384171 NCBI chr 9:87,015,960...87,112,531
Ensembl chr 9:87,016,999...87,124,141 		JBrowse link
G Pfn1 profilin 1 acts_upstream_of_or_within ISO MGI:108360 (PMID:10069337) RGD PMID:10069337 NCBI chr10:55,863,882...55,866,587
Ensembl chr10:55,863,881...55,868,611 		JBrowse link
G Phactr4 phosphatase and actin regulator 4 involved_in IEA
ISO 		GO_REF:0000104
(PMID:17609112)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:17609112 GO_REF:0000104 GO_REF:0000107 NCBI chr 5:149,828,716...149,904,955
Ensembl chr 5:149,833,367...149,905,187 		JBrowse link
G Plxnb2 plexin B2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:17554007) 		Ensembl
RGD		 PMID:17554007 GO_REF:0000107 NCBI chr 7:122,111,917...122,138,201
Ensembl chr 7:122,111,917...122,127,746 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO
IEA 		(PMID:21901791)
MGI:5645931 (PMID:25190059)
GO_REF:0000107 		RGD
Ensembl		 PMID:21901791 PMID:25190059 GO_REF:0000107 NCBI chr 7:126,518,587...126,614,581
Ensembl chr 7:126,518,587...126,614,581 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:97760 (PMID:22007132) 		Ensembl
RGD		 PMID:22007132 GO_REF:0000107 NCBI chr19:41,059,843...41,083,189
Ensembl chr19:41,059,843...41,086,494 		JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:97592 (PMID:22007132) 		Ensembl
RGD		 PMID:22007132 GO_REF:0000107 NCBI chr 2:238,297,140...238,389,317
Ensembl chr 2:238,300,127...238,386,315 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857447 (PMID:9262482) 		Ensembl
RGD		 PMID:9262482 GO_REF:0000107 NCBI chr17:1,548,449...1,613,461
Ensembl chr17:1,548,449...1,613,461 		JBrowse link
G Ptk7 protein tyrosine kinase 7 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2135272|MGI:3046905|MGI:3640803 (PMID:15229603), (PMID:20704721) 		Ensembl
RGD		 PMID:15229603 PMID:20704721 GO_REF:0000107 NCBI chr 9:21,849,756...21,916,077
Ensembl chr 9:21,849,801...21,916,078 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in
acts_upstream_of_or_within 		ISO (PMID:7720556)
MGI:2137533 (PMID:9636176) 		RGD PMID:7720556 PMID:9636176 NCBI chr 9:43,440,047...43,463,327
Ensembl chr 9:43,440,273...43,463,325 		JBrowse link
G Rala RAS like proto-oncogene A involved_in IEA
ISO 		GO_REF:0000107
(PMID:23063435) 		Ensembl
RGD		 PMID:23063435 GO_REF:0000107 NCBI chr17:51,787,682...51,840,738
Ensembl chr17:51,787,699...51,840,733 		JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:97858 (PMID:7607067) 		Ensembl
RGD		 PMID:7607067 GO_REF:0000107 NCBI chr10:84,379,780...84,424,371
Ensembl chr10:84,389,622...84,425,160 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:97856 (PMID:7607067) 		Ensembl
RGD		 PMID:7607067 GO_REF:0000107 NCBI chr 7:135,246,427...135,268,889
Ensembl chr 7:135,246,427...135,268,889 		JBrowse link
G Rgma repulsive guidance molecule BMP co-receptor a acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3029714 (PMID:14749425) 		Ensembl
RGD		 PMID:14749425 GO_REF:0000107 NCBI chr 1:136,538,782...136,582,763
Ensembl chr 1:136,538,759...136,582,763 		JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 acts_upstream_of_or_within ISO MGI:1100883|MGI:2135272 (PMID:17229766) RGD PMID:17229766 NCBI chr 6:45,407,823...45,502,773
Ensembl chr 6:45,407,965...45,502,771 		JBrowse link
G Rps7 ribosomal protein S7 acts_upstream_of_or_within ISO MGI:3043039 (PMID:15384171) RGD PMID:15384171 NCBI chr 6:50,994,581...50,999,447 JBrowse link
G Sall1 spalt-like transcription factor 1 acts_upstream_of_or_within ISO MGI:2139360 (PMID:16790473) RGD PMID:16790473 NCBI chr19:34,179,316...34,196,278
Ensembl chr19:34,181,078...34,196,278 		JBrowse link
G Sall4 spalt-like transcription factor 4 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1889585|MGI:3699175 (PMID:16790473) 		Ensembl
RGD		 PMID:16790473 GO_REF:0000107 NCBI chr 3:177,891,705...177,909,743
Ensembl chr 3:177,891,705...177,909,743 		JBrowse link
G Scrib scribble planar cell polarity protein involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:22095531)
MGI:1889322|MGI:2135272|MGI:5056373 (PMID:20643356), (PMID:21515572)
GO_REF:0000117 		RGD
UniProt		 PMID:20643356 PMID:21515572 PMID:22095531 GO_REF:0000117 NCBI chr 7:109,640,034...109,663,354
Ensembl chr 7:109,640,034...109,663,022 		JBrowse link
G Sdc4 syndecan 4 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2135272 (PMID:23760952) 		Ensembl
RGD		 PMID:23760952 GO_REF:0000107 NCBI chr 3:173,574,239...173,592,923
Ensembl chr 3:173,574,239...173,593,670 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:2135272|MGI:4440621 (PMID:19966784), (PMID:20215345) RGD PMID:19966784 PMID:20215345 NCBI chr 2:221,236,897...221,306,986
Ensembl chr 2:221,236,898...221,306,919 		JBrowse link
G Sema4c semaphorin 4C involved_in IEA
ISO 		GO_REF:0000107
(PMID:21122816) 		Ensembl
RGD		 PMID:21122816 GO_REF:0000107 NCBI chr 9:46,287,540...46,298,041
Ensembl chr 9:46,287,542...46,297,998 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO MGI:4437211 (PMID:20133625) RGD PMID:20133625 NCBI chr 8:119,390,207...119,475,863
Ensembl chr 8:119,390,207...119,475,863 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:108078 (PMID:19850029) 		Ensembl
RGD		 PMID:19850029 GO_REF:0000107 NCBI chr16:75,278,325...75,316,736
Ensembl chr16:75,278,325...75,316,736 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:892014 (PMID:19850029) 		Ensembl
RGD		 PMID:19850029 GO_REF:0000107 NCBI chr 2:171,387,536...171,395,081
Ensembl chr 2:171,387,385...171,395,079 		JBrowse link
G Shroom3 shroom family member 3 acts_upstream_of_or_within ISO MGI:1889778 (PMID:16249236) RGD PMID:16249236 NCBI chr14:15,383,769...15,681,158
Ensembl chr14:15,383,769...15,680,462 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:9284043) RGD PMID:9284043 NCBI chr 5:170,995,851...171,064,957
Ensembl chr 5:170,995,851...171,064,957 		JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1338031|MGI:1338881 (PMID:19592578) 		Ensembl
RGD		 PMID:19592578 GO_REF:0000107 NCBI chr 3:126,685,017...126,697,957
Ensembl chr 3:126,685,422...126,697,956 		JBrowse link
G Spint2 serine peptidase inhibitor, Kunitz type, 2 acts_upstream_of_or_within ISO MGI:1338033|MGI:1338881|MGI:2156187 (PMID:19592578) RGD PMID:19592578 NCBI chr 1:93,685,637...93,708,091
Ensembl chr 1:93,685,641...93,708,091 		JBrowse link
G St14 ST14 transmembrane serine protease matriptase acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1338031|MGI:1338033 (PMID:19592578) 		Ensembl
RGD		 PMID:19592578 GO_REF:0000107 NCBI chr 8:37,798,994...37,839,881
Ensembl chr 8:37,798,995...37,855,652 		JBrowse link
G Stil STIL, centriolar assembly protein acts_upstream_of_or_within ISO MGI:2152962 (PMID:10385121) RGD PMID:10385121 NCBI chr 5:133,757,598...133,810,493
Ensembl chr 5:133,760,417...133,810,494 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3512046 (PMID:16155214) 		Ensembl
RGD		 PMID:16155214 GO_REF:0000107 NCBI chr 1:255,199,108...255,296,983
Ensembl chr 1:255,199,164...255,296,981 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:54,845,674...54,859,340
Ensembl chr 1:54,845,674...54,853,583 		JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within ISO MGI:3763367 (PMID:17868131) RGD PMID:17868131 NCBI chr 1:104,838,795...104,855,635
Ensembl chr 1:104,838,623...104,855,630 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2176682 (PMID:8622766), (PMID:9811866) RGD PMID:8622766 PMID:9811866 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,229,910...24,253,219 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:7600998) 		Ensembl
RGD		 PMID:7600998 GO_REF:0000107 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:90,324,046...90,340,899 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:9217007) 		Ensembl
RGD		 PMID:9217007 GO_REF:0000107 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:100,692,953...100,792,856 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3698004 (PMID:17082251) 		Ensembl
RGD		 PMID:17082251 GO_REF:0000107 NCBI chr 9:118,194,735...118,204,354
Ensembl chr 9:118,194,444...118,204,442 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4456438 (PMID:20178780) 		Ensembl
RGD		 PMID:20178780 GO_REF:0000107 NCBI chr12:37,713,522...37,722,606
Ensembl chr12:37,713,529...37,722,606 		JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in ISO (PMID:11007897) RGD PMID:11007897 NCBI chr 3:108,418,537...108,443,330
Ensembl chr 3:108,418,513...108,443,328 		JBrowse link
G Trim71 tripartite motif containing 71 acts_upstream_of_or_within ISO MGI:4123844 (PMID:19098426) RGD PMID:19098426 NCBI chr 8:123,076,499...123,129,016 JBrowse link
G Tsc1 TSC complex subunit 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2183146 (PMID:11438694) 		Ensembl
RGD		 PMID:11438694 GO_REF:0000107 NCBI chr 3:32,367,434...32,416,565
Ensembl chr 3:32,367,670...32,416,568 		JBrowse link
G Tsc2 TSC complex subunit 2 acts_upstream_of_or_within ISO MGI:1926345 (PMID:10096549) RGD PMID:10096549 NCBI chr10:14,125,679...14,160,317
Ensembl chr10:14,125,680...14,160,600 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3664273 (PMID:19223390) 		Ensembl
RGD		 PMID:19223390 GO_REF:0000107 NCBI chr 4:163,276,583...163,318,297
Ensembl chr 4:163,276,583...163,318,390 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857265 (PMID:7729687) RGD PMID:7729687 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:56,398,061...56,404,965 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:105056|MGI:107926|MGI:1100883|MGI:1349164|MGI:1857642|MGI:1918711|MGI:1923799|MGI:2139764|MGI:98958 (PMID:11709546), (PMID:12499390), (PMID:14512015), (PMID:15229603), (PMID:17229766), (PMID:17433286), (PMID:19966784), (PMID:21246654), (PMID:23760952) 		Ensembl
RGD		 PMID:11709546 PMID:12499390 PMID:14512015 PMID:15229603 PMID:17229766 More... GO_REF:0000107 NCBI chr13:86,995,124...87,021,770
Ensembl chr13:86,997,920...87,021,770 		JBrowse link
G Vasp vasodilator-stimulated phosphoprotein involved_in
acts_upstream_of_or_within 		IBA
ISO
IEA 		GO_REF:0000033
MGI:108360 (PMID:15371503)
GO_REF:0000117
GO_REF:0000107 		GO_Central
RGD
UniProt
Ensembl		 PMID:15371503 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 1:88,038,026...88,053,783
Ensembl chr 1:88,038,037...88,058,650 		JBrowse link
G Wdr83 WD repeat domain 83 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4367006 (PMID:37509073) 		Ensembl
RGD		 PMID:37509073 GO_REF:0000107 NCBI chr19:39,981,890...39,987,443
Ensembl chr19:39,981,262...39,987,442 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1298218|MGI:2135272 (PMID:17433286), (PMID:19795512) 		Ensembl
RGD		 PMID:17433286 PMID:19795512 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,703,665...3,724,860 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2387501 (PMID:16598713) 		Ensembl
RGD		 PMID:16598713 GO_REF:0000107 NCBI chr 3:49,624,028...49,754,323
Ensembl chr 3:49,624,028...49,754,323 		JBrowse link
G Zic2 Zic family member 2 acts_upstream_of_or_within ISO MGI:1862004 (PMID:15384171) RGD PMID:15384171 NCBI chr15:105,982,711...105,988,167
Ensembl chr15:105,983,342...105,988,167 		JBrowse link
G Zic5 Zic family member 5 acts_upstream_of_or_within ISO MGI:3052154 (PMID:15136147) RGD PMID:15136147 NCBI chr15:105,964,932...105,973,669
Ensembl chr15:105,964,932...105,973,669 		JBrowse link
neural tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Brpf1 bromodomain and PHD finger containing, 1 acts_upstream_of_or_within ISO MGI:5705132 (PMID:27528195) RGD PMID:27528195 NCBI chr 4:148,011,977...148,028,431
Ensembl chr 4:148,011,931...148,028,424 		JBrowse link
G Casp8 caspase 8 acts_upstream_of_or_within ISO MGI:3609638 (PMID:12404118) RGD PMID:12404118 NCBI chr 9:67,747,109...67,806,699
Ensembl chr 9:67,758,033...67,806,699 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2179740 (PMID:11694877) RGD PMID:11694877 NCBI chr 1:14,132,303...14,134,746
Ensembl chr 1:14,103,457...14,134,782 		JBrowse link
G Coq7 coenzyme Q7, hydroxylase acts_upstream_of_or_within ISO MGI:2158322 (PMID:11716496) RGD PMID:11716496 NCBI chr 1:182,270,570...182,285,959
Ensembl chr 1:182,269,399...182,285,508 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2682066 (PMID:14603322) 		Ensembl
RGD		 PMID:14603322 GO_REF:0000107 NCBI chr 6:30,801,841...30,841,239
Ensembl chr 6:30,801,918...30,840,830 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:15930098) 		Ensembl
RGD		 PMID:15930098 GO_REF:0000107 NCBI chr 3:172,091,591...172,116,497
Ensembl chr 3:172,092,017...172,116,493 		JBrowse link
G Ipmk inositol polyphosphate multikinase acts_upstream_of_or_within ISO MGI:3583918 (PMID:15939867) RGD PMID:15939867 NCBI chr20:17,216,151...17,250,826
Ensembl chr20:17,216,151...17,250,757 		JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 acts_upstream_of_or_within ISO (PMID:16260493) RGD PMID:16260493 NCBI chr 5:51,149,524...51,212,012
Ensembl chr 5:51,154,352...51,212,012 		JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3603514 (PMID:16000382) 		Ensembl
RGD		 PMID:16000382 GO_REF:0000107 NCBI chr18:2,075,309...2,199,774
Ensembl chr18:2,075,309...2,193,475 		JBrowse link
G Nup50 nucleoporin 50 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:103561|MGI:107532|MGI:2152414|MGI:2385621|MGI:2386173 (PMID:10891500) 		Ensembl
RGD		 PMID:10891500 GO_REF:0000107 NCBI chr 7:117,927,882...117,945,155
Ensembl chr 7:117,925,716...117,946,959 		JBrowse link
G Ptch1 patched 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:10500113) 		Ensembl
RGD		 PMID:10500113 GO_REF:0000107 NCBI chr17:1,548,449...1,613,461
Ensembl chr17:1,548,449...1,613,461 		JBrowse link
G Shh sonic hedgehog signaling molecule IMP RGD PMID:8124714 RGD:69996 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:7,687,846...7,697,901 		JBrowse link
G Stk3 serine/threonine kinase 3 involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000117
MGI:1929004 (PMID:19786569) 		UniProt
RGD		 PMID:19786569 GO_REF:0000117 NCBI chr 7:67,938,341...68,208,472
Ensembl chr 7:67,938,378...68,208,508 		JBrowse link
G Stk4 serine/threonine kinase 4 acts_upstream_of_or_within
involved_in 		IEA
ISO 		GO_REF:0000107
MGI:1928487 (PMID:19786569)
GO_REF:0000117 		Ensembl
RGD
UniProt		 PMID:19786569 GO_REF:0000107 GO_REF:0000117 NCBI chr 3:173,165,238...173,247,135
Ensembl chr 3:173,165,083...173,247,134 		JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3716885 (PMID:16357211) 		Ensembl
RGD		 PMID:16357211 GO_REF:0000107 NCBI chr12:39,970,554...40,003,727
Ensembl chr12:39,970,621...40,003,725 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2388066 (PMID:11406614) 		Ensembl
RGD		 PMID:11406614 GO_REF:0000107 NCBI chr 4:163,276,583...163,318,297
Ensembl chr 4:163,276,583...163,318,390 		JBrowse link
neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl13b ARF like GTPase 13B involved_in IEA
ISO 		GO_REF:0000107
(PMID:23014696) 		Ensembl
RGD		 PMID:23014696 GO_REF:0000107 NCBI chr11:13,597,538...13,663,681
Ensembl chr11:13,597,538...13,663,546 		JBrowse link
G Dzip1l DAZ interacting zinc finger protein 1-like acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2442827 (PMID:29487109) 		Ensembl
RGD		 PMID:29487109 GO_REF:0000107 NCBI chr 8:109,067,466...109,108,390
Ensembl chr 8:109,067,775...109,108,393 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4458412 (PMID:24009529) 		Ensembl
RGD		 PMID:24009529 GO_REF:0000107 NCBI chr10:14,537,134...14,624,926
Ensembl chr10:14,537,466...14,624,926 		JBrowse link
G Ptch1 patched 1 involved_in ISO
IEA 		(PMID:8681379)
GO_REF:0000107 		RGD
Ensembl		 PMID:8681379 GO_REF:0000107 NCBI chr17:1,548,449...1,613,461
Ensembl chr17:1,548,449...1,613,461 		JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (PMID:17553904) RGD PMID:17553904 NCBI chr19:31,865,050...31,957,930
Ensembl chr19:31,865,231...31,957,930 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1919757 (PMID:29487109) 		Ensembl
RGD		 PMID:29487109 GO_REF:0000107 NCBI chr20:35,902,281...36,133,161
Ensembl chr20:35,902,700...36,133,057 		JBrowse link
G Tmem107 transmembrane protein 107 involved_in ISO (PMID:22698544) RGD PMID:22698544 NCBI chr10:54,268,218...54,273,520
Ensembl chr10:54,271,196...54,278,586 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4129326 (PMID:21945076) 		Ensembl
RGD		 PMID:21945076 GO_REF:0000107 NCBI chr 9:99,521,176...99,557,966
Ensembl chr 9:99,521,179...99,557,963 		JBrowse link
regulation of establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:4440619|MGI:4440621 (PMID:19966784) RGD PMID:19966784 NCBI chr 2:221,236,897...221,306,986
Ensembl chr 2:221,236,898...221,306,919 		JBrowse link
roof plate formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf7 growth differentiation factor 7 acts_upstream_of_or_within ISO MGI:2386906 (PMID:10693795) RGD PMID:10693795 NCBI chr 6:36,890,799...36,901,783
Ensembl chr 6:36,890,799...36,901,783 		JBrowse link
rostrocaudal neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in ISO (PMID:20093472) RGD PMID:20093472 NCBI chr  X:12,856,708...12,883,670
Ensembl chr  X:12,855,859...12,905,875 		JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857632 (PMID:8887324) 		Ensembl
RGD		 PMID:8887324 GO_REF:0000107 NCBI chr17:86,240,683...86,250,044
Ensembl chr17:86,243,491...86,250,024 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2179440 (PMID:19913509) 		Ensembl
RGD		 PMID:19913509 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:19,814,360...19,819,854 		JBrowse link
smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:54,134,064...54,405,198 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:35,902,281...36,133,161
Ensembl chr20:35,902,700...36,133,057 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 4:163,276,583...163,318,297
Ensembl chr 4:163,276,583...163,318,390 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr14:43,396,130...43,460,012
Ensembl chr14:43,397,835...43,459,939 		JBrowse link
zona limitans intrathalamica formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule IDA RGD PMID:25281935 RGD:12832757 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:7,687,846...7,697,901 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19315
    developmental process 7255
      anatomical structure development 6748
        tube development 1370
          neural tube development 196
            floor plate development + 10
            neural tube formation + 129
            neural tube patterning + 51
Path 2
Term Annotations click to browse term
  biological_process 19315
    developmental process 7255
      anatomical structure development 6748
        multicellular organism development 5415
          embryo development 1376
            embryo development ending in birth or egg hatching 904
              chordate embryonic development 888
                neural tube development 196
                  floor plate development + 10
                  neural tube formation + 129
                  neural tube patterning + 51
paths to the root