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ONTOLOGY REPORT - ANNOTATIONS

Term:limbic system development
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Accession:GO:0021761 term browser browse the term
Definition:The progression of the limbic system over time from its initial formation until its mature state. The limbic system is a collection of structures in the brain involved in emotion, motivation and emotional aspects of memory.


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limbic system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cntnap2 contactin associated protein 2 involved_in ISO (PMID:18179895) RGD PMID:18179895 NCBI chr 4:74,109,455...76,366,434 JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO MGI:3710254 (PMID:17473172) RGD PMID:17473172 NCBI chr12:42,540,378...42,555,490 JBrowse link
ammon gyrus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp8 LDL receptor related protein 8 involved_in ISO (PMID:18778775) RGD PMID:18778775 NCBI chr 5:127,792,236...127,864,207 JBrowse link
amygdala development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1a2 ATPase Na+/K+ transporting subunit alpha 2 acts_upstream_of_or_within ISO (PMID:12805306) RGD PMID:12805306 NCBI chr13:84,729,597...84,754,544 JBrowse link
G Esr2 estrogen receptor 2 IEP RGD PMID:22791648 RGD:8694158 NCBI chr 6:100,589,553...100,645,240 JBrowse link
G Nf1 neurofibromin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1339975 (PMID:25242307)		 Ensembl
RGD		 PMID:25242307 GO_REF:0000107 NCBI chr10:64,803,986...65,037,086 JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO MGI:2151350 (PMID:12527005) RGD PMID:12527005 NCBI chr20:46,050,134...46,071,257 JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 acts_upstream_of_or_within ISO MGI:97306 (PMID:25242307) RGD PMID:25242307 NCBI chr 1:161,522,399...161,637,623 JBrowse link
G Tbr1 T-box brain transcription factor 1 acts_upstream_of_or_within ISO MGI:2179766 (PMID:24441682) RGD PMID:24441682 NCBI chr 3:46,350,237...46,368,397 JBrowse link
G Uba6 ubiquitin-like modifier activating enzyme 6 acts_upstream_of_or_within ISO MGI:2176173|MGI:5509054 (PMID:23499007) RGD PMID:23499007 NCBI chr14:21,884,039...21,947,857 JBrowse link
dentate gyrus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atat1 alpha tubulin acetyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4453011 (PMID:23720746)		 Ensembl
RGD		 PMID:23720746 GO_REF:0000107 NCBI chr20:2,849,399...2,862,614 JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO MGI:1856982 (PMID:30498428) RGD PMID:30498428 NCBI chr 3:109,816,397...109,826,528 JBrowse link
G Btg2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO MGI:3525505 (PMID:20020054) RGD PMID:20020054 NCBI chr13:48,083,931...48,087,690 JBrowse link
G Csf1r colony stimulating factor 1 receptor IMP RGD PMID:33450391 RGD:126781687 NCBI chr18:56,834,152...56,860,804 JBrowse link
G Drd1 dopamine receptor D1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2181426|MGI:3707260 (PMID:17360497)		 Ensembl
RGD		 PMID:17360497 GO_REF:0000107 NCBI chr17:10,545,488...10,550,029 JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO MGI:2148858 (PMID:10729342) RGD PMID:10729342 NCBI chr 1:258,626,584...258,633,594 JBrowse link
G Fbxo41 F-box protein 41 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:35372812)
GO_REF:0000107		 RGD
Ensembl		 PMID:35372812 GO_REF:0000107 NCBI chr 4:118,007,517...118,039,547 JBrowse link
G Fezf2 Fez family zinc finger 2 acts_upstream_of_or_within ISO MGI:3046867 (PMID:16971467) RGD PMID:16971467 NCBI chr15:12,768,614...12,777,554 JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:28204491)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:28204491 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:116,884,167...116,937,590 JBrowse link
G Fxr2 FMR1 autosomal homolog 2 involved_in ISO (PMID:21658585) RGD PMID:21658585 NCBI chr10:54,350,577...54,370,964 JBrowse link
G Kcnq2 potassium voltage-gated channel subfamily Q member 2 acts_upstream_of_or_within ISO MGI:98248 (PMID:16464983) RGD PMID:16464983 NCBI chr 3:168,194,776...168,253,831 JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:2179048|MGI:2386464 (PMID:18297065) RGD PMID:18297065 NCBI chr10:38,226,388...38,263,062 JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO MGI:1856965 (PMID:21970971) RGD PMID:21970971 NCBI chr19:11,603,129...12,048,930 JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1933764 (PMID:10631168)		 Ensembl
RGD		 PMID:10631168 GO_REF:0000107 NCBI chr 2:222,340,541...222,453,931 JBrowse link
G Lmx1a LIM homeobox transcription factor 1 alpha acts_upstream_of_or_within ISO MGI:1888413 (PMID:1638738) RGD PMID:1638738 NCBI chr13:79,834,614...79,978,253 JBrowse link
G Mdk midkine involved_in IEA
ISO		 GO_REF:0000107
(PMID:10096022)		 Ensembl
RGD		 PMID:10096022 GO_REF:0000107 NCBI chr 3:77,901,134...77,903,997 JBrowse link
G Mef2c myocyte enhancer factor 2C IEP RGD PMID:18949272 RGD:5131610 NCBI chr 2:15,708,732...15,871,639 JBrowse link
G Neurod1 neuronal differentiation 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(PMID:10398678), (PMID:10639171)
MGI:106593 (PMID:10804213)		 UniProt
RGD		 PMID:10398678 PMID:10639171 PMID:10804213 GO_REF:0000024 NCBI chr 3:64,359,554...64,363,526 JBrowse link
G Neurod6 neuronal differentiation 6 acts_upstream_of_or_within ISO MGI:1339708 (PMID:10804213) RGD PMID:10804213 NCBI chr 4:84,846,659...84,849,905 JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO MGI:2151350|MGI:2181426 (PMID:12527005), (PMID:17953618) RGD PMID:12527005 PMID:17953618 NCBI chr20:46,050,134...46,071,257 JBrowse link
G Pianp PILR alpha associated neural protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:31511635)
GO_REF:0000107		 RGD
Ensembl		 PMID:31511635 GO_REF:0000107 NCBI chr 4:157,796,425...157,804,842 JBrowse link
G Pomgnt1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3623521 (PMID:21970971)		 Ensembl
RGD		 PMID:21970971 GO_REF:0000107 NCBI chr 5:129,634,274...129,644,150 JBrowse link
G Pomt2 protein-O-mannosyltransferase 2 acts_upstream_of_or_within ISO MGI:5302103 (PMID:21970971) RGD PMID:21970971 NCBI chr 6:106,755,462...106,794,849 JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:20808958) RGD PMID:20808958 NCBI chr13:104,196,615...104,251,007 JBrowse link
G Pten phosphatase and tensin homolog involved_in ISO (PMID:17706614) RGD PMID:17706614 NCBI chr 1:240,043,707...240,110,330 JBrowse link
G Reln reelin IMP RGD PMID:15459104 RGD:2317799 NCBI chr 4:12,736,177...13,162,956 JBrowse link
G Scn2a sodium voltage-gated channel alpha subunit 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1309503 (PMID:16464983)		 Ensembl
RGD		 PMID:16464983 GO_REF:0000107 NCBI chr 3:70,710,862...70,845,569 JBrowse link
G Sct secretin acts_upstream_of_or_within ISO MGI:3815315 (PMID:21159798) RGD PMID:21159798 NCBI chr 1:196,382,857...196,383,668 JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2176256|MGI:2179048 (PMID:18297065)		 Ensembl
RGD		 PMID:18297065 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280 JBrowse link
G Tmem108 transmembrane protein 108 involved_in ISO (PMID:28096412) RGD PMID:28096412 NCBI chr 8:104,066,081...104,360,172 JBrowse link
G Tuba1a tubulin, alpha 1A involved_in ISO MGI:3617352 (PMID:21041996) RGD PMID:21041996 NCBI chr 7:131,992,151...131,996,850 JBrowse link
G Vps13b vacuolar protein sorting 13 homolog B acts_upstream_of_or_within ISO (PMID:37573958) RGD PMID:37573958 NCBI chr 7:66,557,862...67,128,429 JBrowse link
fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 Fibroblast growth factor receptor 1 involved_in ISO (PMID:20410112) RGD PMID:20410112 NCBI chr16:73,194,631...73,249,855 JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO (PMID:20410112) RGD PMID:20410112 NCBI chr 1:194,175,703...194,280,914 JBrowse link
gonadotrophin-releasing hormone neuronal migration to the hypothalamus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ndnf neuron-derived neurotrophic factor involved_in ISO (PMID:31883645) RGD PMID:31883645 NCBI chr 4:94,944,392...94,981,871 JBrowse link
G Nrp1 neuropilin 1 involved_in ISO (PMID:21059704) RGD PMID:21059704 NCBI chr19:73,256,557...73,411,705 JBrowse link
G Nrp2 neuropilin 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:21059704)		 Ensembl
RGD		 PMID:21059704 GO_REF:0000107 NCBI chr 9:71,616,602...71,731,869 JBrowse link
G Plxna1 plexin A1 involved_in ISO UniProtKB:P70208 (PMID:31690636) RGD PMID:31690636 NCBI chr 4:121,737,934...121,782,901 JBrowse link
G Plxna3 plexin A3 involved_in ISO UniProtKB:P70206 (PMID:31690636) RGD PMID:31690636 NCBI chr  X:152,115,699...152,131,608 JBrowse link
G Sema3a semaphorin 3A involved_in ISO (PMID:21059704) RGD PMID:21059704 NCBI chr 4:21,282,398...21,754,834 JBrowse link
G Sema3e semaphorin 3E involved_in ISO (PMID:25985275) RGD PMID:25985275 NCBI chr 4:20,297,534...20,555,287 JBrowse link
hippocampus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1c activin A receptor type 1C IEP RGD PMID:8940033 RGD:631880 NCBI chr 3:63,224,322...63,301,252 JBrowse link
G Akap5 A-kinase anchoring protein 5 IEP RGD PMID:19535604 RGD:2313144 NCBI chr 6:95,051,527...95,061,075 JBrowse link
G Akr1c14 aldo-keto reductase family 1, member C14 IEP RGD PMID:21047951 RGD:4145527 NCBI chr17:66,156,286...66,173,277 JBrowse link
G Alk ALK receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:5700373 (PMID:17487225) RGD PMID:17487225 NCBI chr 6:28,631,431...29,351,321 JBrowse link
G Anxa3 annexin A3 IEP RGD PMID:18493952 RGD:2302825 NCBI chr14:13,031,675...13,085,678 JBrowse link
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within ISO MGI:4432181 (PMID:29078390) RGD PMID:29078390 NCBI chr 9:95,869,839...95,905,354 JBrowse link
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 IEP RGD PMID:16200642 RGD:6906893 NCBI chr13:47,708,157...47,807,389 JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO MGI:3767672 (PMID:18032602) RGD PMID:18032602 NCBI chr 1:202,184,812...202,204,118 JBrowse link
G Bbs2 Bardet-Biedl syndrome 2 acts_upstream_of_or_within ISO MGI:3521669 (PMID:18032602) RGD PMID:18032602 NCBI chr19:10,909,653...10,944,998 JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO MGI:3045473 (PMID:18032602), (PMID:24695551) RGD PMID:18032602 PMID:24695551 NCBI chr 8:59,731,912...59,765,408 JBrowse link
G Bcan brevican involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2388924 (PMID:12370289)		 Ensembl
RGD		 PMID:12370289 GO_REF:0000107 NCBI chr 2:173,454,479...173,467,717 JBrowse link
G Casp3 caspase 3 IEP RGD PMID:18459132 RGD:2293317 NCBI chr16:52,395,539...52,413,794 JBrowse link
G Cdk5 cyclin-dependent kinase 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1861809 (PMID:11517264)		 Ensembl
RGD		 PMID:11517264 GO_REF:0000107 NCBI chr 4:11,647,098...11,651,606 JBrowse link
G Cdk5r1 cyclin-dependent kinase 5 regulatory subunit 1 acts_upstream_of_or_within ISO MGI:1330828 (PMID:11517264) RGD PMID:11517264 NCBI chr10:65,981,692...65,985,831 JBrowse link
G Cdk5r2 cyclin-dependent kinase 5 regulatory subunit 2 acts_upstream_of_or_within ISO MGI:101764 (PMID:11517264) RGD PMID:11517264 NCBI chr 9:76,416,251...76,417,719 JBrowse link
G Cfl1 cofilin 1 IEP RGD PMID:27073215 RGD:11568695 NCBI chr 1:212,227,124...212,230,656 JBrowse link
G Chrna2 cholinergic receptor nicotinic alpha 2 subunit part_of IEP RGD PMID:17046198 RGD:152995358 NCBI chr15:44,517,862...44,534,144 JBrowse link
G Chrna5 cholinergic receptor nicotinic alpha 5 subunit IEP RGD PMID:15558717 RGD:150530459 NCBI chr 8:55,369,794...55,398,526 JBrowse link
G Crk CRK proto-oncogene, adaptor protein acts_upstream_of_or_within ISO MGI:104686 (PMID:19074029) RGD PMID:19074029 NCBI chr10:61,028,736...61,054,971 JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO MGI:88508 (PMID:19074029) RGD PMID:19074029 NCBI chr11:97,033,033...97,067,457 JBrowse link
G Cyp11a1 cytochrome P450, family 11, subfamily a, polypeptide 1 IEP RGD PMID:21047951 RGD:4145527 NCBI chr 8:67,318,665...67,330,196 JBrowse link
G Cyp17a1 cytochrome P450, family 17, subfamily a, polypeptide 1 IEP RGD PMID:21047951 RGD:4145527 NCBI chr 1:245,535,462...245,543,148 JBrowse link
G Cyp19a1 cytochrome P450, family 19, subfamily a, polypeptide 1 IEP RGD PMID:21047951 RGD:4145527 NCBI chr 8:63,449,148...63,476,534 JBrowse link
G Dab1 DAB adaptor protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3777252 (PMID:18477607)		 Ensembl
RGD		 PMID:18477607 GO_REF:0000107 NCBI chr 5:118,392,953...119,513,625 JBrowse link
G Dclk2 doublecortin-like kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1277171 (PMID:19342486)		 Ensembl
RGD		 PMID:19342486 GO_REF:0000107 NCBI chr 2:174,506,660...174,636,353 JBrowse link
G Dcx doublecortin involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1918012|MGI:2387757 (PMID:19342486)		 Ensembl
RGD		 PMID:19342486 GO_REF:0000107 NCBI chr  X:107,430,767...107,573,612 JBrowse link
G Dlx1 distal-less homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:94902 (PMID:11163262)		 Ensembl
RGD		 PMID:11163262 GO_REF:0000107 NCBI chr 3:56,356,190...56,360,780 JBrowse link
G Dlx2 distal-less homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:94901 (PMID:11163262)		 Ensembl
RGD		 PMID:11163262 GO_REF:0000107 NCBI chr 3:56,370,238...56,373,581 JBrowse link
G Drd1 dopamine receptor D1 acts_upstream_of_or_within ISO MGI:2181426|MGI:3707260 (PMID:17360497) RGD PMID:17360497 NCBI chr17:10,545,488...10,550,029 JBrowse link
G Eif2b2 eukaryotic translation initiation factor 2B subunit beta IEP RGD PMID:12850562 RGD:11041879 NCBI chr 6:104,866,926...104,873,351 JBrowse link
G Eif2b3 eukaryotic translation initiation factor 2B subunit gamma IEP RGD PMID:12850562 RGD:11041879 NCBI chr 5:130,492,167...130,558,692 JBrowse link
G Eif2b4 eukaryotic translation initiation factor 2B subunit delta IEP RGD PMID:12850562 RGD:11041879 NCBI chr 6:30,903,148...30,908,803 JBrowse link
G Eif2b5 eukaryotic translation initiation factor 2B subunit epsilon IEP RGD PMID:12850562 RGD:11041879 NCBI chr11:80,394,433...80,404,468 JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 IEP RGD PMID:18565716 RGD:13204724 NCBI chr 1:22,518,051...22,583,044 JBrowse link
G Epha5 EPH receptor A5 involved_in ISS
ISO		 GO_REF:0000024
(PMID:12124402)		 UniProt
RGD		 PMID:12124402 GO_REF:0000024 NCBI chr14:24,007,400...24,374,854 JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit IEP RGD PMID:23932971 RGD:9587811 NCBI chr10:86,126,023...86,162,001 JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit IEP RGD PMID:23932971 RGD:9587811 NCBI chr 4:76,624,399...76,687,362 JBrowse link
G Fbxo41 F-box protein 41 acts_upstream_of_or_within ISO (PMID:35372812) RGD PMID:35372812 NCBI chr 4:118,007,517...118,039,547 JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 IEP RGD PMID:14992819 RGD:13208825 NCBI chr 8:36,544,462...36,589,684 JBrowse link
G Fgf13 fibroblast growth factor 13 involved_in ISS
ISO		 GO_REF:0000024
(PMID:22726441)		 UniProt
RGD		 PMID:22726441 GO_REF:0000024 NCBI chr  X:137,276,498...137,800,056 JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:2684610|MGI:3798847 (PMID:22235033) RGD PMID:22235033 NCBI chr17:54,134,064...54,405,198 JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A IEP RGD PMID:19535712 RGD:2325978 NCBI chr10:6,136,458...6,560,003 JBrowse link
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B IEP RGD PMID:19535712 RGD:2325978 NCBI chr 4:170,297,811...170,775,420 JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in ISO
IEA		 (PMID:19581563)
GO_REF:0000107		 RGD
Ensembl		 PMID:19581563 GO_REF:0000107 NCBI chr11:76,004,502...76,154,665 JBrowse link
G Hdac1 histone deacetylase 1 acts_upstream_of_or_within ISO MGI:1097691 (PMID:19380719) RGD PMID:19380719 NCBI chr 5:147,138,328...147,165,387 JBrowse link
G Hdac2 histone deacetylase 2 acts_upstream_of_or_within ISO MGI:108086 (PMID:19380719) RGD PMID:19380719 NCBI chr20:42,101,815...42,126,486 JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IEP RGD PMID:22102872 RGD:10002783 NCBI chr17:6,269,302...6,280,429 JBrowse link
G Hsd17b3 hydroxysteroid (17-beta) dehydrogenase 3 IEP RGD PMID:21047951 RGD:4145527 NCBI chr17:1,027,229...1,058,554 JBrowse link
G Hsd17b7 hydroxysteroid (17-beta) dehydrogenase 7 IEP RGD PMID:21047951 RGD:4145527 NCBI chr13:82,170,079...82,190,018 JBrowse link
G Hsd3b1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 IEP RGD PMID:21047951 RGD:4145527 NCBI chr 2:186,169,864...186,175,984 JBrowse link
G Hsd3b2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 IEP RGD PMID:21047951 RGD:4145527 NCBI chr 2:186,095,897...186,105,354 JBrowse link
G Htr5a 5-hydroxytryptamine receptor 5A IEP RGD PMID:16572590 RGD:2316993 NCBI chr 4:7,444,968...7,454,651 JBrowse link
G Id4 inhibitor of DNA binding 4 acts_upstream_of_or_within ISO MGI:3505549 (PMID:15469968) RGD PMID:15469968 NCBI chr17:16,389,387...16,391,956 JBrowse link
G Igf1r insulin-like growth factor 1 receptor IEP RGD PMID:22042446 RGD:10403040 NCBI chr 1:130,959,787...131,248,664 JBrowse link
G Insr insulin receptor IEP RGD PMID:22042446 RGD:10403040 NCBI chr12:5,991,135...6,129,275 JBrowse link
G Kcna1 potassium voltage-gated channel subfamily A member 1 involved_in ISO (PMID:17315199) RGD PMID:17315199 NCBI chr 4:161,150,378...161,160,051 JBrowse link
G Kcnq2 potassium voltage-gated channel subfamily Q member 2 acts_upstream_of_or_within ISO (PMID:15608631) RGD PMID:15608631 NCBI chr 3:168,194,776...168,253,831 JBrowse link
G Kdm6b lysine demethylase 6B IDA RGD PMID:23932971 RGD:9587811 NCBI chr10:54,120,716...54,142,212 JBrowse link
G Kif14 kinesin family member 14 involved_in ISO (PMID:23308235) RGD PMID:23308235 NCBI chr13:50,478,646...50,542,256 JBrowse link
G Kif5a kinesin family member 5A IEP RGD PMID:9349526 RGD:12792964 NCBI chr 7:63,051,894...63,089,024 JBrowse link
G Kif5b kinesin family member 5B IEP RGD PMID:9349526 RGD:12792964 NCBI chr17:56,185,386...56,222,990 JBrowse link
G Kirrel3 kirre like nephrin family adhesion molecule 3 involved_in ISO (PMID:26575286) RGD PMID:26575286 NCBI chr 8:32,865,779...33,407,555 JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO MGI:1933764 (PMID:10631168) RGD PMID:10631168 NCBI chr 2:222,340,541...222,453,931 JBrowse link
G Lhx5 LIM homeobox 5 acts_upstream_of_or_within ISO MGI:2152620 (PMID:10325223) RGD PMID:10325223 NCBI chr12:36,126,186...36,134,625 JBrowse link
G Lmx1a LIM homeobox transcription factor 1 alpha acts_upstream_of_or_within ISO MGI:1888413 (PMID:1638738) RGD PMID:1638738 NCBI chr13:79,834,614...79,978,253 JBrowse link
G Lrp8 LDL receptor related protein 8 acts_upstream_of_or_within ISO MGI:109520 (PMID:17330141) RGD PMID:17330141 NCBI chr 5:127,792,236...127,864,207 JBrowse link
G Mas1 MAS1 proto-oncogene, G protein-coupled receptor IEP RGD PMID:1521325 RGD:2316795 NCBI chr 1:50,428,064...50,459,537 JBrowse link
G Mdk midkine involved_in ISO (PMID:10096022) RGD PMID:10096022 NCBI chr 3:77,901,134...77,903,997 JBrowse link
G Mecp2 methyl CpG binding protein 2 IEP RGD PMID:14751287 RGD:12743658 NCBI chr  X:156,932,481...156,995,981 JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid involved_in ISO (PMID:24828044) RGD PMID:24828044 NCBI chr 5:140,510,933...140,525,828 JBrowse link
G Mkks MKKS centrosomal shuttling protein acts_upstream_of_or_within ISO MGI:3526444 (PMID:18032602) RGD PMID:18032602 NCBI chr 3:144,654,563...144,672,831 JBrowse link
G Ncoa1 nuclear receptor coactivator 1 IEP RGD PMID:22085911 RGD:5688137 NCBI chr 6:32,952,090...33,229,829 JBrowse link
G Nefh neurofilament heavy chain IEP RGD PMID:14620872 RGD:9743946 NCBI chr14:84,044,428...84,054,413 JBrowse link
G Nefl neurofilament light chain IEP RGD PMID:14620872 RGD:9743946 NCBI chr15:46,477,330...46,481,203 JBrowse link
G Nefm neurofilament medium chain IEP RGD PMID:14620872 RGD:9743946 NCBI chr15:46,535,857...46,541,161 JBrowse link
G Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:23863479)		 Ensembl
RGD		 PMID:23863479 GO_REF:0000107 NCBI chr14:79,627,399...79,710,709 JBrowse link
G Nfix nuclear factor I X involved_in ISO MGI:3802571 (PMID:18477394), (PMID:23042739), (PMID:23776487), (PMID:23964093) RGD PMID:18477394 PMID:23042739 PMID:23776487 PMID:23964093 NCBI chr19:23,355,388...23,450,360 JBrowse link
G Nkx2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857494 (PMID:11163262)		 Ensembl
RGD		 PMID:11163262 GO_REF:0000107 NCBI chr 6:73,996,601...74,001,483 JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 IEP RGD PMID:18493952 RGD:2302825 NCBI chr10:79,403,939...79,426,620 JBrowse link
G Nog noggin IEP RGD PMID:15171992 RGD:10416525 NCBI chr10:74,625,874...74,627,501 JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 acts_upstream_of_or_within ISO MGI:3037444 (PMID:15456880) RGD PMID:15456880 NCBI chr 5:67,157,141...67,198,287 JBrowse link
G Ogdh oxoglutarate dehydrogenase involved_in IEA
ISO		 GO_REF:0000107
(PMID:16901643)		 Ensembl
RGD		 PMID:16901643 GO_REF:0000107 NCBI chr14:81,150,021...81,217,479 JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 acts_upstream_of_or_within ISO MGI:1340044|MGI:2384054 (PMID:10729324), (PMID:17330141) RGD PMID:10729324 PMID:17330141 NCBI chr10:59,533,042...59,591,808 JBrowse link
G Pebp1 phosphatidylethanolamine binding protein 1 IEP RGD PMID:18493952 RGD:2302825 NCBI chr12:44,946,307...44,967,890 JBrowse link
G Phlpp1 PH domain and leucine rich repeat protein phosphatase 1 IEP RGD PMID:20819118 RGD:8693633 NCBI chr13:22,308,532...22,530,978 JBrowse link
G Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 IEP RGD PMID:20819118 RGD:8693633 NCBI chr19:37,835,125...37,901,804 JBrowse link
G Plxna3 plexin A3 acts_upstream_of_or_within ISO MGI:2386961 (PMID:11683995) RGD PMID:11683995 NCBI chr  X:152,115,699...152,131,608 JBrowse link
G Ppp1r9b protein phosphatase 1, regulatory subunit 9B IEP RGD PMID:21123436 RGD:10043818 NCBI chr10:80,434,888...80,450,919 JBrowse link
G Ptprs protein tyrosine phosphatase, receptor type, S involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2158734 (PMID:15842738)		 Ensembl
RGD		 PMID:15842738 GO_REF:0000107 NCBI chr 9:1,245,408...1,307,015 JBrowse link
G Ptprz1 protein tyrosine phosphatase, receptor type Z1 IEP RGD PMID:10906718 RGD:9589828 NCBI chr 4:51,397,316...51,595,220 JBrowse link
G Ran RAN, member RAS oncogene family IEP RGD PMID:18493952 RGD:2302825 NCBI chr12:27,674,049...27,678,598 JBrowse link
G Rara retinoic acid receptor, alpha IEP RGD PMID:18619947 RGD:8693612 NCBI chr10:83,883,490...83,928,932 JBrowse link
G Reln reelin involved_in IEA
ISO		 GO_REF:0000107
(PMID:17229826)		 Ensembl
RGD		 PMID:17229826 GO_REF:0000107 NCBI chr 4:12,736,177...13,162,956 JBrowse link
G Sct secretin involved_in ISS
ISO		 GO_REF:0000024
(PMID:18534766)		 UniProt
RGD		 PMID:18534766 GO_REF:0000024 NCBI chr 1:196,382,857...196,383,668 JBrowse link
G Sema6b semaphorin 6B involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:20484647)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:20484647 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:950,939...967,905 JBrowse link
G Slc17a6 solute carrier family 17 member 6 IEP RGD PMID:18502731 RGD:9999204 NCBI chr 1:101,212,489...101,252,543 JBrowse link
G Slc32a1 solute carrier family 32 member 1 IEP RGD PMID:18502731 RGD:9999204 NCBI chr 3:167,687,245...167,691,714 JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 IEP RGD PMID:8770891 RGD:4892048 NCBI chr 1:35,514,914...35,548,898 JBrowse link
G Srd5a2 steroid 5 alpha-reductase 2 IEP RGD PMID:21047951 RGD:4145527 NCBI chr 6:21,426,225...21,465,727 JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:2181426|MGI:2385464 (PMID:15837932) RGD PMID:15837932 NCBI chr 9:21,924,050...21,933,338 JBrowse link
G Tent2 terminal nucleotidyltransferase 2 IEP RGD PMID:24074826 RGD:9684936 NCBI chr 2:26,115,150...26,167,465 JBrowse link
G Tp73 tumor protein p73 acts_upstream_of_or_within ISO MGI:1859911 (PMID:10716451) RGD PMID:10716451 NCBI chr 5:169,903,801...169,988,075 JBrowse link
G Tsc1 TSC complex subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2176055|MGI:2656240 (PMID:17522300)		 Ensembl
RGD		 PMID:17522300 GO_REF:0000107 NCBI chr 3:32,367,434...32,416,565 JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:31983064)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:31983064 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:152,660,259...152,671,682 JBrowse link
G Tuba1a tubulin, alpha 1A involved_in ISO MGI:3617352 (PMID:17218254) RGD PMID:17218254 NCBI chr 7:131,992,151...131,996,850 JBrowse link
G Uba6 ubiquitin-like modifier activating enzyme 6 acts_upstream_of_or_within ISO MGI:2176173|MGI:5509054 (PMID:23499007) RGD PMID:23499007 NCBI chr14:21,884,039...21,947,857 JBrowse link
G Uqcrq ubiquinol-cytochrome c reductase, complex III subunit VII involved_in ISO (PMID:16901643) RGD PMID:16901643 NCBI chr10:38,086,691...38,093,871 JBrowse link
G Usp9x ubiquitin specific peptidase 9, X-linked acts_upstream_of_or_within ISO MGI:5438072 (PMID:23861879) RGD PMID:23861879 NCBI chr  X:9,588,825...9,726,993 JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO MGI:1857489 (PMID:10631167) RGD PMID:10631167 NCBI chr10:44,533,734...44,577,919 JBrowse link
G Xrcc1 X-ray repair cross complementing 1 acts_upstream_of_or_within ISO MGI:3836442 (PMID:19633665) RGD PMID:19633665 NCBI chr 1:89,268,721...89,296,619 JBrowse link
G Xrn2 5'-3' exoribonuclease 2 IEP RGD PMID:23933240 RGD:9684963 NCBI chr 3:134,436,916...134,509,308 JBrowse link
G Ywhae tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2667341 (PMID:12796778)		 Ensembl
RGD		 PMID:12796778 GO_REF:0000107 NCBI chr10:61,082,934...61,120,618 JBrowse link
G Zbtb18 zinc finger and BTB domain containing 18 acts_upstream_of_or_within ISO MGI:3851929 (PMID:19409883) RGD PMID:19409883 NCBI chr13:89,439,501...89,447,958 JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO MGI:2387499|MGI:2684610 (PMID:17644613) RGD PMID:17644613 NCBI chr 3:29,214,581...29,344,890 JBrowse link
G Zic1 Zic family member 1 involved_in ISO MGI:106676 (PMID:17507568) RGD PMID:17507568 NCBI chr 8:100,785,282...100,797,716 JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:106683 (PMID:17507568) RGD PMID:17507568 NCBI chr  X:136,123,662...136,129,627 JBrowse link
hypothalamus cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hap1 huntingtin-associated protein 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:24355921)		 Ensembl
RGD		 PMID:24355921 GO_REF:0000107 NCBI chr10:85,778,267...85,786,553 JBrowse link
G Otp orthopedia homeobox acts_upstream_of_or_within ISO MGI:2180541 (PMID:10557207) RGD PMID:10557207 NCBI chr 2:27,842,892...27,851,093 JBrowse link
G Pou3f2 POU class 3 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857996 (PMID:8543156)		 Ensembl
RGD		 PMID:8543156 GO_REF:0000107 NCBI chr 5:36,077,930...36,083,838 JBrowse link
G Prdm13 PR/SET domain 13 involved_in ISO (PMID:34730112) RGD PMID:34730112 NCBI chr 5:35,220,815...35,232,866 JBrowse link
G Prop1 PROP paired-like homeobox 1 acts_upstream_of_or_within ISO MGI:1856842 (PMID:9067988) RGD PMID:9067988 NCBI chr10:35,271,959...35,274,434 JBrowse link
hypothalamus cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxb1 forkhead box B1 involved_in ISO (PMID:19046377) RGD PMID:19046377 NCBI chr 8:70,407,221...70,409,841 JBrowse link
G Pitx2 paired-like homeodomain 2 acts_upstream_of_or_within ISO MGI:1857846 (PMID:18206388) RGD PMID:18206388 NCBI chr 2:220,391,417...220,411,588 JBrowse link
hypothalamus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO MGI:1857429 (PMID:15342910) RGD PMID:15342910 NCBI chr 1:105,076,472...105,081,906 JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO MGI:1856982 (PMID:30498428) RGD PMID:30498428 NCBI chr 3:109,816,397...109,826,528 JBrowse link
G Crh corticotropin releasing hormone IEP RGD PMID:20002962 RGD:5130950 NCBI chr 2:104,059,184...104,061,048 JBrowse link
G Crhr1 corticotropin releasing hormone receptor 1 IEP RGD PMID:20002962 RGD:5130950 NCBI chr10:89,540,192...89,583,466 JBrowse link
G Crhr2 corticotropin releasing hormone receptor 2 IEP RGD PMID:20002962 RGD:5130950 NCBI chr 4:85,553,163...85,596,203 JBrowse link
G Ctnnb1 catenin beta 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:1858008 (PMID:32868762)		 Ensembl
RGD		 PMID:32868762 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661 JBrowse link
G Cyp19a1 cytochrome P450, family 19, subfamily a, polypeptide 1 IEP RGD PMID:15804399 RGD:4891928 NCBI chr 8:63,449,148...63,476,534 JBrowse link
G Esr2 estrogen receptor 2 IEP RGD PMID:12960049 RGD:1582276 NCBI chr 6:100,589,553...100,645,240 JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor IEP RGD PMID:8946059 RGD:2313681 NCBI chr 8:39,303,936...39,426,022 JBrowse link
G Gsx1 GS homeobox 1 acts_upstream_of_or_within ISO MGI:2154448 (PMID:8631293) RGD PMID:8631293 NCBI chr12:7,880,663...7,882,947 JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor IEP RGD PMID:23291449 RGD:7207858 NCBI chr 7:95,483,105...95,488,031 JBrowse link
G Ncoa1 nuclear receptor coactivator 1 IEP RGD PMID:12551846 RGD:5688241 NCBI chr 6:32,952,090...33,229,829 JBrowse link
G Nkx2-1 NK2 homeobox 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:5302534 (PMID:32868762)		 Ensembl
RGD		 PMID:32868762 GO_REF:0000107 NCBI chr 6:73,996,601...74,001,483 JBrowse link
G Nkx2-6 NK2 homeobox 6 involved_in ISO (PMID:9621431) RGD PMID:9621431 NCBI chr15:50,852,965...50,857,060 JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
IEA		 (PMID:20512159)
GO_REF:0000107		 RGD
Ensembl		 PMID:20512159 GO_REF:0000107 NCBI chr13:39,355,698...39,429,154 JBrowse link
G Rax retina and anterior neural fold homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856862 (PMID:925203)		 Ensembl
RGD		 PMID:925203 GO_REF:0000107 NCBI chr18:59,463,347...59,467,469 JBrowse link
G Reln reelin IEP RGD PMID:10436054 RGD:634730 NCBI chr 4:12,736,177...13,162,956 JBrowse link
G Sox3 SRY-box transcription factor 3 involved_in ISO (PMID:14981518) RGD PMID:14981518 NCBI chr  X:139,308,608...139,310,687 JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 IEP RGD PMID:15804399 PMID:8770891 RGD:4891928, RGD:4892048 NCBI chr 1:35,514,914...35,548,898 JBrowse link
G Srd5a2 steroid 5 alpha-reductase 2 IEP RGD PMID:15804399 RGD:4891928 NCBI chr 6:21,426,225...21,465,727 JBrowse link
G Uqcrq ubiquinol-cytochrome c reductase, complex III subunit VII involved_in ISO (PMID:16901643) RGD PMID:16901643 NCBI chr10:38,086,691...38,093,871 JBrowse link
hypothalamus gonadotrophin-releasing hormone neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nhlh2 nescient helix loop helix 2 acts_upstream_of_or_within_positive_effect ISO (PMID:23785158) RGD PMID:23785158 NCBI chr 2:189,444,287...189,449,625 JBrowse link
G Ubb ubiquitin B acts_upstream_of_or_within ISO MGI:3774112 (PMID:18299572) RGD PMID:18299572 NCBI chr10:47,746,923...47,748,628 JBrowse link
mammillary axonal complex development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO MGI:2387499|MGI:2668659 (PMID:25741725) RGD PMID:25741725 NCBI chr 3:29,214,581...29,344,890 JBrowse link
mammillary body development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxb1 forkhead box B1 involved_in ISO (PMID:11170346), (PMID:15654859) RGD PMID:11170346 PMID:15654859 NCBI chr 8:70,407,221...70,409,841 JBrowse link
mammillothalamic axonal tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxb1 forkhead box B1 involved_in ISO (PMID:10662642), (PMID:11170346) RGD PMID:10662642 PMID:11170346 NCBI chr 8:70,407,221...70,409,841 JBrowse link
nucleus accumbens development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3512079 (PMID:17207476)		 Ensembl
RGD		 PMID:17207476 GO_REF:0000107 NCBI chr 1:119,982,272...120,017,416 JBrowse link
orbitofrontal cortex development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arpc5 actin related protein 2/3 complex, subunit 5 IEP RGD PMID:23459330 RGD:11049475 NCBI chr13:67,454,379...67,463,288 JBrowse link
G Drd1 dopamine receptor D1 IEP RGD PMID:22015925 RGD:7248608 NCBI chr17:10,545,488...10,550,029 JBrowse link
G Drd2 dopamine receptor D2 IEP RGD PMID:22015925 RGD:7248608 NCBI chr 8:58,605,403...58,669,339 JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 involved_in ISO (PMID:20410112) RGD PMID:20410112 NCBI chr16:73,194,631...73,249,855 JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO (PMID:20410112) RGD PMID:20410112 NCBI chr 1:194,175,703...194,280,914 JBrowse link
G Reln reelin IEP RGD PMID:20035841 RGD:2317761 NCBI chr 4:12,736,177...13,162,956 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20534
    multicellular organismal process 8969
      multicellular organism development 5329
        system development 4611
          limbic system development 178
            amygdala development 7
            cingulate gyrus development 0
            hippocampus development + 139
            hypothalamus development + 37
            mammillary body development + 2
            nucleus accumbens development 1
            orbitofrontal cortex development + 6
            parahippocampal gyrus development 0
Path 2
Term Annotations click to browse term
  biological_process 20534
    developmental process 7107
      anatomical structure development 6609
        multicellular organism development 5329
          system development 4611
            nervous system development 2862
              central nervous system development 1216
                brain development 903
                  forebrain development 559
                    limbic system development 178
                      amygdala development 7
                      cingulate gyrus development 0
                      hippocampus development + 139
                      hypothalamus development + 37
                      mammillary body development + 2
                      nucleus accumbens development 1
                      orbitofrontal cortex development + 6
                      parahippocampal gyrus development 0
paths to the root