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ONTOLOGY REPORT - ANNOTATIONS

Term:striatum development
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Accession:GO:0021756 term browser browse the term
Definition:The progression of the striatum over time from its initial formation until its mature state. The striatum is a region of the forebrain consisting of the caudate nucleus, putamen and fundus striati.
Synonyms:exact_synonym: neostriatum development;   striate nucleus development


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striatum development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO MGI:3767672 (PMID:18032602) RGD PMID:18032602 NCBI chr 1:211,614,195...211,633,504
Ensembl chr 1:202,186,125...202,204,086 		JBrowse link
G Bbs2 Bardet-Biedl syndrome 2 acts_upstream_of_or_within ISO MGI:3521669 (PMID:18032602) RGD PMID:18032602 NCBI chr19:10,915,566...10,950,911
Ensembl chr19:10,909,619...10,944,993 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO MGI:3045473 (PMID:18032602) RGD PMID:18032602 NCBI chr 8:68,627,739...68,661,232
Ensembl chr 8:59,731,912...59,765,607 		JBrowse link
G Cntnap2 contactin associated protein 2 involved_in ISO (PMID:18179893) RGD PMID:18179893 NCBI chr 4:75,109,358...77,366,258
Ensembl chr 4:74,109,472...76,362,027 		JBrowse link
G Drd1 dopamine receptor D1 acts_upstream_of_or_within
involved_in		 IEP
ISO
IEA		 MGI:2181426|MGI:3707260 (PMID:17360497)
GO_REF:0000107		 RGD
Ensembl		 PMID:17360497 PMID:22015925 GO_REF:0000107, RGD:7248608 NCBI chr17:10,545,488...10,550,029
Ensembl chr17:10,540,558...10,545,002 		JBrowse link
G Drd2 dopamine receptor D2 IEP RGD PMID:22015925 RGD:7248608 NCBI chr 8:58,605,403...58,669,339
Ensembl chr 8:49,708,927...49,772,875 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 IEP RGD PMID:18565716 RGD:13204724 NCBI chr 1:22,518,051...22,583,044
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Foxp1 forkhead box P1 IEP RGD PMID:12815709 RGD:11536004 NCBI chr 4:133,117,346...133,808,647
Ensembl chr 4:131,564,756...132,112,258 		JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857299 (PMID:9886073)		 Ensembl
RGD		 PMID:9886073 GO_REF:0000107 NCBI chr  X:137,655,744...137,687,718
Ensembl chr  X:132,736,096...132,768,154 		JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO MGI:2177751|MGI:2177753|MGI:2177757 (PMID:11030759), (PMID:17715336) RGD PMID:11030759 PMID:17715336 NCBI chr14:80,070,456...80,219,668
Ensembl chr14:75,845,836...75,995,070 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 IEP RGD PMID:18272292 RGD:13462055 NCBI chr 7:124,706,246...124,867,234
Ensembl chr 7:122,826,696...122,987,703 		JBrowse link
G Mecp2 methyl CpG binding protein 2 IEP RGD PMID:12605461 RGD:12790706 NCBI chr  X:156,932,481...156,995,981
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Mkks MKKS centrosomal shuttling protein acts_upstream_of_or_within ISO MGI:3526444 (PMID:18032602) RGD PMID:18032602 NCBI chr 3:144,654,563...144,672,831
Ensembl chr 3:124,201,877...124,220,162 		JBrowse link
G Ogdh oxoglutarate dehydrogenase involved_in IEA
ISO		 GO_REF:0000107
(PMID:16901643)		 Ensembl
RGD		 PMID:16901643 GO_REF:0000107 NCBI chr14:85,363,949...85,431,405
Ensembl chr14:81,150,091...81,217,479 		JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO MGI:1857851 (PMID:18443282) RGD PMID:18443282 NCBI chr15:10,837,252...11,482,037
Ensembl chr15:8,406,492...9,051,288 		JBrowse link
G Secisbp2 SECIS binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2181426|MGI:5583885 (PMID:24844465)		 Ensembl
RGD		 PMID:24844465 GO_REF:0000107 NCBI chr17:13,690,263...13,721,303
Ensembl chr17:13,538,513...13,569,523 		JBrowse link
G Slc7a11 solute carrier family 7 member 11 acts_upstream_of_or_within ISO MGI:1857061 (PMID:17035536) RGD PMID:17035536 NCBI chr 2:136,532,912...136,668,560
Ensembl chr 2:133,963,107...134,517,536 		JBrowse link
G Slitrk5 SLIT and NTRK-like family, member 5 acts_upstream_of_or_within ISO MGI:4459459 (PMID:20418887) RGD PMID:20418887 NCBI chr15:95,261,397...95,270,465
Ensembl chr15:88,847,535...88,856,836 		JBrowse link
caudate nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp2 forkhead box P2 involved_in ISO
IEA		 (PMID:11872605)
GO_REF:0000107		 RGD
Ensembl		 PMID:11872605 GO_REF:0000107 NCBI chr 4:44,099,848...44,677,700
Ensembl chr 4:43,133,912...43,711,683 		JBrowse link
nucleus accumbens development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3512079 (PMID:17207476)		 Ensembl
RGD		 PMID:17207476 GO_REF:0000107 NCBI chr 1:129,392,516...129,436,552
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
putamen development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp2 forkhead box P2 involved_in ISO
IEA		 (PMID:11872605)
GO_REF:0000107		 RGD
Ensembl		 PMID:11872605 GO_REF:0000107 NCBI chr 4:44,099,848...44,677,700
Ensembl chr 4:43,133,912...43,711,683 		JBrowse link
striatal medium spiny neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b BCL11 transcription factor B acts_upstream_of_or_within ISO MGI:2663971 (PMID:18199763) RGD PMID:18199763 NCBI chr 6:132,598,968...132,692,123
Ensembl chr 6:126,834,531...126,928,224 		JBrowse link
G Inhba inhibin subunit beta A involved_in ISO (PMID:25804741) RGD PMID:25804741 NCBI chr17:53,787,159...53,810,942
Ensembl chr17:49,095,920...49,108,982 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:21423165)
GO_REF:0000024		 Ensembl
RGD
BHF-UCL		 PMID:21423165 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:122,448,323...122,518,623
Ensembl chr 7:120,570,402...120,630,374 		JBrowse link
G Zswim6 zinc finger, SWIM-type containing 6 involved_in ISO (PMID:28433741) RGD PMID:28433741 NCBI chr 2:40,944,617...41,112,340
Ensembl chr 2:39,212,949...39,378,924 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20546
    developmental process 7139
      anatomical structure development 6638
        striatum development 24
          caudate nucleus development 1
          nucleus accumbens development 1
          putamen development 1
          striatal medium spiny neuron differentiation 4
Path 2
Term Annotations click to browse term
  biological_process 20546
    developmental process 7139
      anatomical structure development 6638
        multicellular organism development 5350
          system development 4630
            nervous system development 2868
              central nervous system development 1227
                brain development 905
                  forebrain development 559
                    telencephalon development 386
                      subpallium development 30
                        striatum development 24
                          caudate nucleus development 1
                          nucleus accumbens development 1
                          putamen development 1
                          striatal medium spiny neuron differentiation 4
paths to the root