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ONTOLOGY REPORT - ANNOTATIONS


Term:ventricular system development
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Accession:GO:0021591 term browser browse the term
Definition:The process whose specific outcome is the progression of the brain ventricular system over time, from its formation to the mature structure. The brain ventricular system consists of four communicating cavities within the brain that are continuous with the central canal of the spinal cord. These cavities include two lateral ventricles, the third ventricle and the fourth ventricle. Cerebrospinal fluid fills the ventricles and is produced by the choroid plexus.



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ventricular system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak8 adenylate kinase 8 acts_upstream_of_or_within ISO MGI:5429197 (PMID:21746835) RGD PMID:21746835 NCBI chr 3:32,426,892...32,542,432 JBrowse link
G Anp32b acidic nuclear phosphoprotein 32 family member B involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5003050 (PMID:21636789)
Ensembl
RGD
PMID:21636789 GO_REF:0000107 NCBI chr 5:65,538,872...65,561,305 JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO MGI:3767672|MGI:4837746|MGI:5474481 (PMID:23160237) RGD PMID:23160237 NCBI chr 1:202,184,812...202,204,118 JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO MGI:3045473 (PMID:24695551) RGD PMID:24695551 NCBI chr 8:59,731,912...59,765,408 JBrowse link
G Ccdc134 coiled-coil domain containing 134 acts_upstream_of_or_within ISO MGI:6117856 (PMID:29115376) RGD PMID:29115376 NCBI chr 7:113,644,557...113,659,050 JBrowse link
G Celsr2 cadherin, EGF LAG seven-pass G-type receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5429210 (PMID:21746835)
Ensembl
RGD
PMID:21746835 GO_REF:0000107 NCBI chr 2:196,029,206...196,053,848 JBrowse link
G Cenpf centromere protein F involved_in ISO (PMID:25564561) RGD PMID:25564561 NCBI chr13:103,715,344...103,760,931 JBrowse link
G Coro1c coronin 1C acts_upstream_of_or_within ISO MGI:4419168 (PMID:29078390) RGD PMID:29078390 NCBI chr12:42,713,024...42,785,179 JBrowse link
G Dpcd deleted in primary ciliary dyskinesia acts_upstream_of_or_within ISO MGI:4262238 (PMID:21746835) RGD PMID:21746835 NCBI chr 1:244,408,766...244,426,891 JBrowse link
G Hydin Hydin, axonemal central pair apparatus protein acts_upstream_of_or_within ISO MGI:1856913 (PMID:18250199), (PMID:4732188) RGD PMID:4732188 PMID:18250199 MGI:61244 MGI:61312 MGI:71926 NCBI chr19:38,236,996...38,583,271 JBrowse link
G Kif27 kinesin family member 27 acts_upstream_of_or_within ISO MGI:4318693 (PMID:21746835) RGD PMID:21746835 NCBI chr17:6,299,544...6,375,106 JBrowse link
G Mboat7 membrane bound O-acyltransferase domain containing 7 acts_upstream_of_or_within ISO MGI:5429211 (PMID:21746835) RGD PMID:21746835 NCBI chr 1:74,440,618...74,454,896 JBrowse link
G Mecp2 methyl CpG binding protein 2 acts_upstream_of_or_within ISO MGI:2158354 (PMID:18571096) RGD PMID:18571096 NCBI chr  X:156,932,481...156,995,981 JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase acts_upstream_of_or_within ISO MGI:3707001 (PMID:17276355) RGD PMID:17276355 NCBI chr 6:91,814,703...91,971,945 JBrowse link
G Nme5 NME/NM23 family member 5 acts_upstream_of_or_within ISO MGI:5429195 (PMID:21746835) RGD PMID:21746835 NCBI chr18:26,437,705...26,454,828 JBrowse link
G Odad2 outer dynein arm docking complex subunit 2 acts_upstream_of_or_within ISO MGI:5311373 (PMID:23849778) RGD PMID:23849778 NCBI chr17:55,216,877...55,409,872 JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:17826737)
UniProt
RGD
PMID:17826737 GO_REF:0000024 NCBI chr 2:164,207,513...164,322,157 JBrowse link
G Sema6d semaphorin 6D acts_upstream_of_or_within ISO (PMID:14977921) RGD PMID:14977921 NCBI chr 3:131,801,680...132,394,578 JBrowse link
G Slc7a11 solute carrier family 7 member 11 acts_upstream_of_or_within ISO MGI:1857061 (PMID:17035536) RGD PMID:17035536 NCBI chr 2:136,532,912...136,668,560 JBrowse link
G Spag6l sperm associated antigen 6-like acts_upstream_of ISO MGI:2662475 (PMID:12167721) RGD PMID:12167721 NCBI chr11:84,173,628...84,269,374 JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within ISO MGI:2152544 (PMID:19732765) RGD PMID:19732765 NCBI chr 3:71,269,425...71,343,936 JBrowse link
G Ttn titin acts_upstream_of_or_within ISO MGI:3763610 (PMID:17360664) RGD PMID:17360664 NCBI chr 3:82,059,648...82,332,130 JBrowse link
G Ulk4 unc-51 like kinase 4 acts_upstream_of_or_within ISO MGI:5429194 (PMID:21746835) RGD PMID:21746835 NCBI chr 8:129,548,431...129,843,555 JBrowse link
G Wdr89 WD repeat domain 89 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4944354 (PMID:29078390)
Ensembl
RGD
PMID:29078390 GO_REF:0000107 NCBI chr 6:94,350,468...94,382,085 JBrowse link
fourth ventricle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm2b lysine demethylase 2B involved_in ISO (PMID:21220025) RGD PMID:21220025 NCBI chr12:39,224,422...39,362,126 JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within ISO MGI:2386445|MGI:3664764 (PMID:11283949), (PMID:16481398) RGD PMID:11283949 PMID:16481398 NCBI chr10:53,393,901...53,525,174 JBrowse link
lateral ventricle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 involved_in ISO
IEP
(PMID:16133142) RGD PMID:16133142 PMID:16133142 RGD:8553876 NCBI chr 4:85,812,784...85,824,964 JBrowse link
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:7525597)
Ensembl
RGD
PMID:7525597 GO_REF:0000107 NCBI chr10:54,318,698...54,324,933 JBrowse link
G Dbi diazepam binding inhibitor acts_upstream_of_or_within ISO (PMID:17150371) RGD PMID:17150371 NCBI chr13:33,794,231...33,802,632 JBrowse link
G Dnah5 dynein, axonemal, heavy chain 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2180081 (PMID:11912187)
Ensembl
RGD
PMID:11912187 GO_REF:0000107 NCBI chr 2:78,937,788...79,255,551 JBrowse link
G Dpcd deleted in primary ciliary dyskinesia involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:20080492)
Ensembl
RGD
PMID:20080492 GO_REF:0000107 NCBI chr 1:244,408,766...244,426,891 JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (PMID:21220025) RGD PMID:21220025 NCBI chr12:39,224,422...39,362,126 JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within ISO MGI:2386439|MGI:2386445 (PMID:10712438), (PMID:11283949), (PMID:9356462) RGD PMID:9356462 PMID:10712438 PMID:11283949 NCBI chr10:53,393,901...53,525,174 JBrowse link
G Nfix nuclear factor I X involved_in
acts_upstream_of_or_within
ISO MGI:3714028 (PMID:25960350)
MGI:3802571 (PMID:29452604)
RGD PMID:25960350 PMID:29452604 NCBI chr19:23,355,388...23,450,360 JBrowse link
G Numb NUMB, endocytic adaptor protein involved_in IEA
ISO
GO_REF:0000107
(PMID:17174898)
Ensembl
RGD
PMID:17174898 GO_REF:0000107 NCBI chr 6:109,162,499...109,284,527 JBrowse link
G Numbl NUMB-like, endocytic adaptor protein involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:17174898)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:17174898 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:82,549,814...82,573,788 JBrowse link
G Pax5 paired box 5 acts_upstream_of_or_within ISO MGI:2386577 (PMID:23349049) RGD PMID:23349049 NCBI chr 5:58,763,334...58,945,719 JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (PMID:17558409) RGD PMID:17558409 NCBI chr19:31,865,050...31,957,930 JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4867728 (PMID:21055390)
Ensembl
RGD
PMID:21055390 GO_REF:0000107 NCBI chr 1:152,660,259...152,671,682 JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in ISO (PMID:21048919) RGD PMID:21048919 NCBI chr13:58,070,947...58,106,825 JBrowse link
third ventricle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:7525597)
Ensembl
RGD
PMID:7525597 GO_REF:0000107 NCBI chr10:54,318,698...54,324,933 JBrowse link
G Dpcd deleted in primary ciliary dyskinesia involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:20080492)
Ensembl
RGD
PMID:20080492 GO_REF:0000107 NCBI chr 1:244,408,766...244,426,891 JBrowse link
G Grcc10 gene rich cluster, C10 gene involved_in ISO (PMID:23453666) RGD PMID:23453666 NCBI chr 4:157,551,276...157,552,924 JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (PMID:21220025) RGD PMID:21220025 NCBI chr12:39,224,422...39,362,126 JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within ISO MGI:2386445 (PMID:11283949) RGD PMID:11283949 NCBI chr10:53,393,901...53,525,174 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20534
    developmental process 7107
      anatomical structure development 6609
        system development 4611
          ventricular system development 38
            fourth ventricle development 2
            lateral ventricle development 14
            third ventricle development 5
Path 2
Term Annotations click to browse term
  biological_process 20534
    developmental process 7107
      anatomical structure development 6609
        multicellular organism development 5329
          system development 4611
            nervous system development 2862
              central nervous system development 1216
                brain development 903
                  ventricular system development 38
                    fourth ventricle development 2
                    lateral ventricle development 14
                    third ventricle development 5
paths to the root