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ONTOLOGY REPORT - ANNOTATIONS


Term:cell differentiation in spinal cord
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Accession:GO:0021515 term browser browse the term
Definition:The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells of the spinal cord. Differentiation includes the processes involved in commitment of a cell to a specific fate.



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cell differentiation in spinal cord term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbx1 developing brain homeobox 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:99,348,638...99,354,173
Ensembl chr 1:99,349,608...99,354,038
JBrowse link
G Notch1 notch receptor 1 IEP RGD PMID:20195794 RGD:2325285 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
JBrowse link
commissural neuron differentiation in spinal cord term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Draxin dorsal inhibitory axon guidance protein involved_in IBA
ISO
GO_REF:0000033
(PMID:19150847)
GO_Central
RGD
PMID:19150847 GO_REF:0000033 NCBI chr 5:158,530,149...158,563,457
Ensembl chr 5:158,530,342...158,564,483
JBrowse link
medial motor column neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within ISO MGI:101776 (PMID:9865699) RGD PMID:9865699 NCBI chr 3:9,026,432...9,035,122
Ensembl chr 3:9,027,425...9,034,480
JBrowse link
G Lhx4 LIM homeobox 4 acts_upstream_of_or_within ISO MGI:102673 (PMID:9865699) RGD PMID:9865699 NCBI chr13:67,877,109...67,917,219
Ensembl chr13:67,877,109...67,927,003
JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95729 (PMID:15215207) RGD PMID:15215207 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:95728 (PMID:15215207) RGD PMID:15215207 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO MGI:4840420 (PMID:19684112) RGD PMID:19684112 NCBI chr 1:245,257,725...245,355,576
Ensembl chr 1:245,257,768...245,355,577
JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95729 (PMID:15215207) RGD PMID:15215207 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:95728 (PMID:15215207) RGD PMID:15215207 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO MGI:4840420 (PMID:19684112) RGD PMID:19684112 NCBI chr 1:245,257,725...245,355,576
Ensembl chr 1:245,257,768...245,355,577
JBrowse link
somatic motor neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln8 CLN8, transmembrane ER and ERGIC protein acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr16:74,749,662...74,759,553
Ensembl chr16:74,749,662...74,759,774
JBrowse link
G Phox2a paired-like homeobox 2a involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3521825 (PMID:16319924)
Ensembl
RGD
PMID:16319924 GO_REF:0000107 NCBI chr 1:156,178,754...156,183,118
Ensembl chr 1:156,178,754...156,183,118
JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within ISO MGI:3716885 (PMID:16357211) RGD PMID:16357211 NCBI chr12:34,309,795...34,347,190
Ensembl chr12:34,309,897...34,342,267
JBrowse link
spinal cord association neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857470 (PMID:16715081) RGD PMID:16715081 NCBI chr 7:21,903,136...21,906,003
Ensembl chr 7:21,903,126...21,905,993
JBrowse link
G Gdf7 growth differentiation factor 7 acts_upstream_of_or_within ISO MGI:2386906 (PMID:10693795) RGD PMID:10693795 NCBI chr 6:31,171,495...31,182,484
Ensembl chr 6:31,178,119...31,182,447
JBrowse link
G Gsx1 GS homeobox 1 acts_upstream_of_or_within ISO MGI:95843 (PMID:16715081) RGD PMID:16715081 NCBI chr12:7,880,663...7,882,947
Ensembl chr12:7,881,460...7,882,753
JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO MGI:95842 (PMID:16715081) RGD PMID:16715081 NCBI chr14:33,123,799...33,126,151
Ensembl chr14:33,124,381...33,126,105
JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISS
ISO
GO_REF:0000024
UniProtKB:P61375 (PMID:17166926)
UniProt
RGD
PMID:17166926 GO_REF:0000024 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
JBrowse link
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within ISO (PMID:19323994) RGD PMID:19323994 NCBI chr 3:9,026,432...9,035,122
Ensembl chr 3:9,027,425...9,034,480
JBrowse link
G Lhx5 LIM homeobox 5 involved_in ISO UniProtKB:P63006 (PMID:17166926) RGD PMID:17166926 NCBI chr12:36,126,186...36,134,625
Ensembl chr12:36,126,186...36,134,625
JBrowse link
G Lmo4 LIM domain only 4 acts_upstream_of_or_within ISO MGI:98480 (PMID:19323994) RGD PMID:19323994 NCBI chr 2:233,264,180...233,280,881
Ensembl chr 2:233,264,182...233,280,880
JBrowse link
G Mdga1 MAM domain containing glycosylphosphatidylinositol anchor 1 involved_in IEP PMID:15019943 HGNC-UCL PMID:15019943 RGD:8554528 NCBI chr20:7,900,327...7,964,309
Ensembl chr20:7,904,358...7,963,471
JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:97491 (PMID:9858722) RGD PMID:9858722 NCBI chr 9:79,567,455...79,664,042
Ensembl chr 9:79,568,634...79,664,042
JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO MGI:97487 (PMID:9858722) RGD PMID:9858722 NCBI chr 5:151,996,368...152,098,023
Ensembl chr 5:151,999,092...152,097,979
JBrowse link
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor acts_upstream_of_or_within ISO MGI:109360 (PMID:19323994) RGD PMID:19323994 NCBI chr 5:128,586,776...128,600,976
Ensembl chr 5:128,587,701...128,600,976
JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO MGI:98956 (PMID:11877374) RGD PMID:11877374 NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651
JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO MGI:98953 (PMID:11877374) RGD PMID:11877374 NCBI chr10:44,034,174...44,078,366
Ensembl chr10:44,034,194...44,078,324
JBrowse link
spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxc10 homeo box C10 acts_upstream_of_or_within ISO MGI:96202 (PMID:18065432) RGD PMID:18065432 NCBI chr 7:134,103,741...134,108,966
Ensembl chr 7:134,103,643...134,108,966
JBrowse link
G Hoxd10 homeo box D10 acts_upstream_of_or_within ISO MGI:96192 (PMID:18065432) RGD PMID:18065432 NCBI chr 3:59,594,516...59,597,725
Ensembl chr 3:59,594,516...59,597,725
JBrowse link
G Isl1 ISL LIM homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:102673 (PMID:19666821)
Ensembl
RGD
PMID:19666821 GO_REF:0000107 NCBI chr 2:48,079,412...48,090,704
Ensembl chr 2:48,080,522...48,095,584
JBrowse link
G Isl2 ISL LIM homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:102673 (PMID:19666821)
Ensembl
RGD
PMID:19666821 GO_REF:0000107 NCBI chr 8:55,923,805...55,928,790
Ensembl chr 8:55,923,805...55,928,790
JBrowse link
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within ISO MGI:101791|MGI:109156 (PMID:19666821) RGD PMID:19666821 NCBI chr 3:9,026,432...9,035,122
Ensembl chr 3:9,027,425...9,034,480
JBrowse link
G Lmo4 LIM domain only 4 involved_in ISO (PMID:18539116) RGD PMID:18539116 NCBI chr 2:233,264,180...233,280,881
Ensembl chr 2:233,264,182...233,280,880
JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:18539116)
MGI:2182358|MGI:2182361|MGI:2182363 (PMID:10482234)
GO_Central
RGD
PMID:10482234 PMID:18539116 GO_REF:0000033 NCBI chr 4:5,866,506...5,871,465
Ensembl chr 4:5,866,506...5,871,465
JBrowse link
G Olig3 oligodendrocyte transcription factor 3 acts_upstream_of_or_within ISO MGI:3573868 (PMID:15769945) RGD PMID:15769945 NCBI chr 1:14,081,259...14,083,336
Ensembl chr 1:14,081,328...14,082,149
JBrowse link
spinal cord motor neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Abt1 activator of basal transcription 1 acts_upstream_of_or_within ISO MGI:99954 (PMID:19299493) RGD PMID:19299493 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259
JBrowse link
G Cacna1a calcium voltage-gated channel subunit alpha1 A acts_upstream_of_or_within ISO MGI:1856209|MGI:1856211 (PMID:17156092) RGD PMID:17156092 NCBI chr19:23,520,741...23,819,971
Ensembl chr19:23,520,741...23,823,225
JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein acts_upstream_of_or_within ISO MGI:1856959 (PMID:2061715) RGD PMID:2061715 NCBI chr16:74,749,662...74,759,553
Ensembl chr16:74,749,662...74,759,774
JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589208 (PMID:21338882) RGD PMID:21338882 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:105373|MGI:95729|MGI:98297 (PMID:21552265)
Ensembl
RGD
PMID:21552265 GO_REF:0000107 NCBI chr 8:4,189,067...4,412,183
Ensembl chr 8:4,189,257...4,412,183
JBrowse link
G Gbx1 gastrulation brain homeobox 1 acts_upstream_of_or_within ISO (PMID:23418536) RGD PMID:23418536 NCBI chr 4:10,645,957...10,672,486
Ensembl chr 4:10,645,957...10,672,486
JBrowse link
G Gdpd5 glycerophosphodiester phosphodiesterase domain containing 5 acts_upstream_of_or_within ISO MGI:5302017 (PMID:21943603) RGD PMID:21943603 NCBI chr 1:153,679,718...153,761,452
Ensembl chr 1:153,679,718...153,761,446
JBrowse link
G Gigyf2 GRB10 interacting GYF protein 2 acts_upstream_of_or_within ISO MGI:4126459 (PMID:19744960) RGD PMID:19744960 NCBI chr 9:88,001,212...88,127,040
Ensembl chr 9:88,001,301...88,125,715
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509 (PMID:21552265) RGD PMID:21552265 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:107736 (PMID:21552265) RGD PMID:21552265 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Ift172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2682066 (PMID:21552265)
Ensembl
RGD
PMID:21552265 GO_REF:0000107 NCBI chr 6:25,081,933...25,121,271
Ensembl chr 6:25,081,980...25,120,860
JBrowse link
G Ighmbp2 immunoglobulin mu DNA binding protein 2 acts_upstream_of_or_within ISO MGI:1857648 (PMID:19299493) RGD PMID:19299493 NCBI chr 1:200,506,641...200,529,293
Ensembl chr 1:200,506,338...200,529,514
JBrowse link
G Isl1 ISL LIM homeobox 1 acts_upstream_of_or_within ISO MGI:2182246 (PMID:8565076) RGD PMID:8565076 NCBI chr 2:48,079,412...48,090,704
Ensembl chr 2:48,080,522...48,095,584
JBrowse link
G Lbx1 ladybird homeobox 1 acts_upstream_of_or_within ISO MGI:2149955 (PMID:15769945) RGD PMID:15769945 NCBI chr 1:244,083,873...244,085,690
Ensembl chr 1:244,083,873...244,085,690
JBrowse link
G Lmo4 LIM domain only 4 acts_upstream_of_or_within ISO (PMID:19666821) RGD PMID:19666821 NCBI chr 2:233,264,180...233,280,881
Ensembl chr 2:233,264,182...233,280,880
JBrowse link
G Mdga2 MAM domain containing glycosylphosphatidylinositol anchor 2 involved_in IEP PMID:15019943 HGNC-UCL PMID:15019943 RGD:8554528 NCBI chr 6:84,746,422...85,608,640
Ensembl chr 6:84,761,941...85,608,126
JBrowse link
G Mir17 microRNA 17 acts_upstream_of_or_within ISO MGI:2676844|MGI:2676868|MGI:2676872|MGI:3618743|MGI:3619438|MGI:3629917|MGI:3629918|MGI:3790968 (PMID:21338882) RGD PMID:21338882 NCBI chr15:92,180,629...92,180,712
Ensembl chr15:92,180,629...92,180,712
JBrowse link
G Mir18a microRNA 18a acts_upstream_of_or_within ISO MGI:2676868|MGI:2676872|MGI:3618743|MGI:3619065|MGI:3619438|MGI:3629917|MGI:3629918 (PMID:21338882) RGD PMID:21338882 NCBI chr15:98,587,984...98,588,079
Ensembl chr15:92,180,765...92,180,860
JBrowse link
G Mir19a microRNA 19a acts_upstream_of_or_within ISO MGI:2676844|MGI:2676872|MGI:3619065|MGI:3629917|MGI:3629918 (PMID:21338882) RGD PMID:21338882 NCBI chr15:92,180,912...92,180,993
Ensembl chr15:92,180,912...92,180,993
JBrowse link
G Mir19b1 microRNA 19b-1 acts_upstream_of_or_within ISO MGI:2676844|MGI:2676872|MGI:3618743|MGI:3619065|MGI:3629918 (PMID:21741442) RGD PMID:21741442 NCBI chr15:92,181,214...92,181,300
Ensembl chr15:92,181,214...92,181,300
JBrowse link
G Mir20a microRNA 20a acts_upstream_of_or_within ISO MGI:2676844|MGI:3618743|MGI:3619065|MGI:3629917|MGI:3629918 (PMID:21338882) RGD PMID:21338882 NCBI chr15:92,181,084...92,181,168
Ensembl chr15:92,181,084...92,181,168
JBrowse link
G Mir92a1 microRNA 92a-1 acts_upstream_of_or_within ISO MGI:2676844|MGI:2676872|MGI:3618743|MGI:3619065|MGI:3629917 (PMID:21338882) RGD PMID:21338882 NCBI chr15:92,181,336...92,181,413
Ensembl chr15:92,181,336...92,181,413
JBrowse link
G Nfe2l1 NFE2 like bZIP transcription factor 1 acts_upstream_of_or_within ISO MGI:3828165 (PMID:21554501) RGD PMID:21554501 NCBI chr10:81,796,055...81,812,926
Ensembl chr10:81,800,366...81,832,318
JBrowse link
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within ISO MGI:1932100 (PMID:10217145) RGD PMID:10217145 NCBI chr 3:134,619,701...134,630,282
Ensembl chr 3:134,620,039...134,622,411
JBrowse link
G Olig2 oligodendrocyte transcription factor 2 acts_upstream_of_or_within ISO MGI:3774124 (PMID:21338882) RGD PMID:21338882 NCBI chr11:30,475,510...30,478,886
Ensembl chr11:30,475,398...30,480,152
JBrowse link
G Olig3 oligodendrocyte transcription factor 3 acts_upstream_of_or_within ISO MGI:104867|MGI:3573868 (PMID:15674731), (PMID:15769945) RGD PMID:15674731 PMID:15769945 NCBI chr 1:14,081,259...14,083,336
Ensembl chr 1:14,081,328...14,082,149
JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO MGI:107736 (PMID:21552265) RGD PMID:21552265 NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333
JBrowse link
G Scyl1 SCY1 like pseudokinase 1 acts_upstream_of_or_within ISO MGI:1921385|MGI:5469960 (PMID:29437892) RGD PMID:29437892 NCBI chr 1:203,045,776...203,059,550
Ensembl chr 1:203,045,741...203,059,533
JBrowse link
G Scyl3 SCY1 like pseudokinase 3 acts_upstream_of_or_within ISO MGI:1931787 (PMID:29437892) RGD PMID:29437892 NCBI chr13:76,278,428...76,303,038
Ensembl chr13:76,278,428...76,301,716
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:107736 (PMID:21552265)
Ensembl
RGD
PMID:21552265 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
spinal cord oligodendrocyte cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1355331|MGI:97347 (PMID:18287202) RGD PMID:18287202 NCBI chr 7:21,903,136...21,906,003
Ensembl chr 7:21,903,126...21,905,993
JBrowse link
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within ISO MGI:1932100|MGI:96919 (PMID:11526078), (PMID:18287202) RGD PMID:11526078 PMID:18287202 NCBI chr 3:134,619,701...134,630,282
Ensembl chr 3:134,620,039...134,622,411
JBrowse link
G Olig2 oligodendrocyte transcription factor 2 acts_upstream_of_or_within ISO MGI:96919 (PMID:18287202) RGD PMID:18287202 NCBI chr11:30,475,510...30,478,886
Ensembl chr11:30,475,398...30,480,152
JBrowse link
G Sox13 SRY-box transcription factor 13 involved_in ISO UniProtKB:P40645 (PMID:26525805) RGD PMID:26525805 NCBI chr13:44,831,097...44,875,522
Ensembl chr13:44,831,085...44,875,762
JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISO (PMID:26525805) RGD PMID:26525805 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386
JBrowse link
spinal cord oligodendrocyte cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857470 (PMID:18287202) RGD PMID:18287202 NCBI chr 7:21,903,136...21,906,003
Ensembl chr 7:21,903,126...21,905,993
JBrowse link
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within ISO (PMID:18287202) RGD PMID:18287202 NCBI chr 3:134,619,701...134,630,282
Ensembl chr 3:134,620,039...134,622,411
JBrowse link
G Olig2 oligodendrocyte transcription factor 2 acts_upstream_of_or_within ISO (PMID:18287202) RGD PMID:18287202 NCBI chr11:30,475,510...30,478,886
Ensembl chr11:30,475,398...30,480,152
JBrowse link
ventral spinal cord interneuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxn4 forkhead box N4 involved_in ISO (PMID:20844123) RGD PMID:20844123 NCBI chr12:42,336,706...42,359,932
Ensembl chr12:42,340,323...42,359,921
JBrowse link
G Gata2 GATA binding protein 2 acts_upstream_of_or_within ISO MGI:1857743 (PMID:10934027) RGD PMID:10934027 NCBI chr 4:120,654,205...120,667,763
Ensembl chr 4:120,658,986...120,667,761
JBrowse link
G Lmo4 LIM domain only 4 acts_upstream_of_or_within ISO (PMID:19666821) RGD PMID:19666821 NCBI chr 2:233,264,180...233,280,881
Ensembl chr 2:233,264,182...233,280,880
JBrowse link
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:16020526)
UniProt
RGD
PMID:16020526 GO_REF:0000024 NCBI chr 7:21,903,136...21,906,003
Ensembl chr 7:21,903,126...21,905,993
JBrowse link
G Dll4 delta like canonical Notch ligand 4 involved_in ISO
IEA
UniProtKB:Q8K3Q3 (PMID:17728344)
GO_REF:0000107
RGD
Ensembl
PMID:17728344 GO_REF:0000107 NCBI chr 3:106,317,114...106,327,004
Ensembl chr 3:106,316,986...106,326,931
JBrowse link
G Foxn4 forkhead box N4 involved_in ISO (PMID:16020526), (PMID:17728344) RGD PMID:16020526 PMID:17728344 NCBI chr12:42,336,706...42,359,932
Ensembl chr12:42,340,323...42,359,921
JBrowse link
ventral spinal cord interneuron fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within ISO MGI:1932100 (PMID:10217145) RGD PMID:10217145 NCBI chr 3:134,619,701...134,630,282
Ensembl chr 3:134,620,039...134,622,411
JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbx1 developing brain homeobox 1 acts_upstream_of_or_within ISO MGI:2182329 (PMID:11239429) RGD PMID:11239429 NCBI chr 1:99,348,638...99,354,173
Ensembl chr 1:99,349,608...99,354,038
JBrowse link
G Dmrt3 doublesex and mab-3 related transcription factor 3 acts_upstream_of_or_within ISO MGI:4420993 (PMID:22932389) RGD PMID:22932389 NCBI chr 1:223,244,340...223,264,254
Ensembl chr 1:223,248,747...223,262,530
JBrowse link
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within ISO (PMID:19666821) RGD PMID:19666821 NCBI chr 3:9,026,432...9,035,122
Ensembl chr 3:9,027,425...9,034,480
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within IDA PMID:9230312 MGI PMID:9230312 RGD:8553789 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Sox1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO MGI:3653406 (PMID:20844123) RGD PMID:20844123 NCBI chr16:77,135,577...77,139,592
Ensembl chr16:77,137,584...77,138,762
JBrowse link
visceral motor neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isl1 ISL LIM homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:109156 (PMID:14766174)
Ensembl
RGD
PMID:14766174 GO_REF:0000107 NCBI chr 2:48,079,412...48,090,704
Ensembl chr 2:48,080,522...48,095,584
JBrowse link
G Isl2 ISL LIM homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:101791|MGI:3046260 (PMID:14766174)
Ensembl
RGD
PMID:14766174 GO_REF:0000107 NCBI chr 8:55,923,805...55,928,790
Ensembl chr 8:55,923,805...55,928,790
JBrowse link
G Tbx20 T-box transcription factor 20 involved_in ISO (PMID:15843409) RGD PMID:15843409 NCBI chr 8:23,200,104...23,258,218
Ensembl chr 8:23,204,507...23,258,175
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    developmental process 7109
      anatomical structure development 6611
        spinal cord development 143
          cell differentiation in spinal cord 63
            commissural neuron differentiation in spinal cord + 1
            medial motor column neuron differentiation 2
            spinal cord association neuron differentiation + 14
            spinal cord motor neuron differentiation + 41
            spinal cord oligodendrocyte cell differentiation + 5
            spinal cord radial glial cell differentiation 0
            ventral spinal cord interneuron differentiation + 14
Path 2
Term Annotations click to browse term
  biological_process 20536
    developmental process 7109
      anatomical structure development 6611
        multicellular organism development 5330
          system development 4612
            nervous system development 2862
              central nervous system development 1216
                spinal cord development 143
                  cell differentiation in spinal cord 63
                    commissural neuron differentiation in spinal cord + 1
                    medial motor column neuron differentiation 2
                    spinal cord association neuron differentiation + 14
                    spinal cord motor neuron differentiation + 41
                    spinal cord oligodendrocyte cell differentiation + 5
                    spinal cord radial glial cell differentiation 0
                    ventral spinal cord interneuron differentiation + 14
paths to the root