Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:antigen processing and presentation of endogenous antigen
go back to main search page
Accession:GO:0019883 term browser browse the term
Definition:The process in which an antigen-presenting cell expresses antigen (peptide or lipid) of endogenous origin on its cell surface in association with an MHC protein complex.
Synonyms:exact_synonym: antigen presentation, endogenous antigen


show annotations for term's descendants           Sort by:
antigen processing and presentation of endogenous antigen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG5 autophagy related 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23382543) Ensembl
MGI		 PMID:23382543 GO_REF:0000107 NCBI chr 1:72,343,950...72,520,402
Ensembl chr 1:72,270,799...72,520,396 		JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B2M beta-2-microglobulin involved_in ISO (PMID:24643698) BHF-UCL PMID:24643698 NCBI chr 1:126,837,721...126,844,043
Ensembl chr 1:126,835,143...126,981,582 		JBrowse link
G IDE insulin degrading enzyme involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:103,992,035...104,106,571
Ensembl chr14:103,992,039...104,106,576 		JBrowse link
G TAP1 transporter 1, ATP binding cassette subfamily B member involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:25,062,772...25,071,989
Ensembl chr 7:25,062,768...25,074,843 		JBrowse link
G TAP2 transporter 2, ATP binding cassette subfamily B member acts_upstream_of_or_within
involved_in		 ISO
IEA		 PMID:1758495 MGI
InterPro		 PMID:1758495 GO_REF:0000002 RGD:1299069 NCBI chr 7:25,045,085...25,056,915
Ensembl chr 7:25,043,840...25,056,922 		JBrowse link
G TAPBP TAP binding protein involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:29,663,491...29,673,453
Ensembl chr 7:29,663,495...29,673,634 		JBrowse link
G ZBTB22 zinc finger and BTB domain containing 22 involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:29,673,006...29,676,614
Ensembl chr 7:29,673,027...29,675,593 		JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TAP2 transporter 2, ATP binding cassette subfamily B member acts_upstream_of_or_within ISO (PMID:1538753) MGI PMID:1538753 NCBI chr 7:25,045,085...25,056,915
Ensembl chr 7:25,043,840...25,056,922 		JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZGP1 alpha-2-glycoprotein 1, zinc-binding involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:7,867,521...7,874,857 JBrowse link
G LOC100513601 patr class I histocompatibility antigen, A-126 alpha chain-like involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:22,888,616...22,920,154 JBrowse link
G LOC100521998 NKG2D ligand 4-like involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:16,057,036...16,059,787 JBrowse link
G LOC106508817 NKG2D ligand 4-like involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:16,090,757...16,100,784 JBrowse link
G SLA-2 MHC class I antigen 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:22,916,747...22,959,405 JBrowse link
G SLA-3 MHC class I antigen 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:22,938,211...22,942,735 JBrowse link
G SLA-6 MHC class I antigen 6 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:23,645,335...23,649,342 JBrowse link
G SLA-7 MHC class I antigen 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:23,634,731...23,638,722 JBrowse link
G SLA-8 MHC class I antigen 8 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:23,622,352...23,625,818 JBrowse link
G ULBP1 UL16 binding protein 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:16,113,774...16,119,273
Ensembl chr 1:16,113,780...16,119,273 		JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class Ib term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZGP1 alpha-2-glycoprotein 1, zinc-binding involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:7,867,521...7,874,857 JBrowse link
G LOC100513601 patr class I histocompatibility antigen, A-126 alpha chain-like involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:22,888,616...22,920,154 JBrowse link
G LOC100521998 NKG2D ligand 4-like involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:16,057,036...16,059,787 JBrowse link
G LOC106508817 NKG2D ligand 4-like involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:16,090,757...16,100,784 JBrowse link
G SLA-2 MHC class I antigen 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:22,916,747...22,959,405 JBrowse link
G SLA-3 MHC class I antigen 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:22,938,211...22,942,735 JBrowse link
G SLA-6 MHC class I antigen 6 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:23,645,335...23,649,342 JBrowse link
G SLA-7 MHC class I antigen 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:23,634,731...23,638,722 JBrowse link
G SLA-8 MHC class I antigen 8 involved_in
acts_upstream_of_or_within		 IBA
ISO		 (PMID:8464890) GO_Central
MGI		 PMID:8464890 GO_REF:0000033 NCBI chr 7:23,622,352...23,625,818 JBrowse link
G ULBP1 UL16 binding protein 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:16,113,774...16,119,273
Ensembl chr 1:16,113,780...16,119,273 		JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TAP2 transporter 2, ATP binding cassette subfamily B member acts_upstream_of_or_within
involved_in		 ISO (PMID:1538753)
(PMID:1538751)		 MGI
UniProt		 PMID:1538751 PMID:1538753 NCBI chr 7:25,045,085...25,056,915
Ensembl chr 7:25,043,840...25,056,922 		JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLA-DRA MHC class II DR-alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:24,825,037...24,830,650
Ensembl chr 7:24,825,052...24,835,158 		JBrowse link
antigen processing and presentation, endogenous lipid antigen via MHC class Ib term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD1.1 CD1 antigen involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:91,854,055...91,863,875 JBrowse link
G CD1D CD1d molecule involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:92,096,670...92,101,177
Ensembl chr 4:92,094,700...92,101,095 		JBrowse link
G CD1E CD1e molecule involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:92,012,787...92,019,363
Ensembl chr 4:92,012,791...92,020,864 		JBrowse link
G PCD1B CD1B antigen involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:92,035,122...92,040,724
Ensembl chr 4:92,031,712...92,040,742 		JBrowse link
negative regulation of antigen processing and presentation of endogenous peptide antigen via MHC class I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HFE homeostatic iron regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:20,758,604...20,767,004
Ensembl chr 7:20,758,741...20,767,000 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18943
    immune system process 2582
      antigen processing and presentation 111
        antigen processing and presentation of endogenous antigen 23
          antigen processing and presentation of endogenous peptide antigen + 18
          antigen processing and presentation, endogenous lipid antigen via MHC class Ib 4
paths to the root