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ONTOLOGY REPORT - ANNOTATIONS


Term:antigen processing and presentation of endogenous antigen
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Accession:GO:0019883 term browser browse the term
Definition:The process in which an antigen-presenting cell expresses antigen (peptide or lipid) of endogenous origin on its cell surface in association with an MHC protein complex.
Synonyms:exact_synonym: antigen presentation, endogenous antigen



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antigen processing and presentation of endogenous antigen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg5 autophagy related 5 acts_upstream_of_or_within IGI
IMP
(PMID:23382543) MGI PMID:23382543 NCBI chr10:44,144,325...44,240,295
Ensembl chr10:44,144,354...44,240,287
JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B2m beta-2 microglobulin involved_in IEA
ISO
Ensembl
GO_Central
GO_REF:0000107 GO_REF:0000119 NCBI chr 2:121,978,168...121,983,563
Ensembl chr 2:121,978,167...121,983,564
JBrowse link
G H2-Q1 histocompatibility 2, Q region locus 1 involved_in ISO (PMID:1402688), (PMID:20364150), (PMID:24643698) UniProt PMID:1402688 PMID:20364150 PMID:24643698 NCBI chr17:35,539,503...35,547,118
Ensembl chr17:35,539,381...35,544,075
JBrowse link
G Ide insulin degrading enzyme involved_in ISS
ISO
UniProt
GO_Central
GO_REF:0000024 GO_REF:0000119 NCBI chr19:37,246,140...37,341,664
Ensembl chr19:37,246,142...37,340,010
JBrowse link
G Tap1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) involved_in ISO
IBA
IEA
GO_Central
Ensembl
GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr17:34,406,530...34,416,199
Ensembl chr17:34,406,527...34,416,199
JBrowse link
G Tap2 transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) acts_upstream_of_or_within
involved_in
ISO MGI
GO_Central
GO_REF:0000008 GO_REF:0000119 NCBI chr17:34,423,453...34,435,295
Ensembl chr17:34,422,501...34,435,295
JBrowse link
G Tapbp TAP binding protein involved_in IEA InterPro GO_REF:0000002 NCBI chr17:34,138,452...34,148,264
Ensembl chr17:34,134,873...34,148,266
JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2-D1 histocompatibility 2, D region locus 1 acts_upstream_of_or_within IDA (PMID:1538753) MGI PMID:1538753 NCBI chr17:35,482,070...35,486,473
Ensembl chr17:35,481,706...35,486,475
JBrowse link
G H2-K1 histocompatibility 2, K1, K region acts_upstream_of_or_within IDA (PMID:1538753) MGI PMID:1538753 NCBI chr17:34,214,986...34,219,316
Ensembl chr17:34,214,991...34,219,321
JBrowse link
G H2-Q1 histocompatibility 2, Q region locus 1 involved_in ISO (PMID:8630735) UniProt PMID:8630735 NCBI chr17:35,539,503...35,547,118
Ensembl chr17:35,539,381...35,544,075
JBrowse link
G Tap2 transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) acts_upstream_of_or_within IDA (PMID:1538753) MGI PMID:1538753 NCBI chr17:34,423,453...34,435,295
Ensembl chr17:34,422,501...34,435,295
JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 2410137M14Rik RIKEN cDNA 2410137M14 gene involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:37,288,593...37,292,129
Ensembl chr17:37,288,593...37,292,129
JBrowse link
G Azgp1 alpha-2-glycoprotein 1, zinc involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:137,979,783...137,988,495
Ensembl chr 5:137,979,782...137,988,495
JBrowse link
G Gm7030 predicted gene 7030 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,438,501...36,440,317
Ensembl chr17:36,420,611...36,440,317
JBrowse link
G H2-Bl histocompatibility 2, blastocyst involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,391,002...36,395,141
Ensembl chr17:36,391,007...36,395,115
JBrowse link
G H2-D1 histocompatibility 2, D region locus 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:35,482,070...35,486,473
Ensembl chr17:35,481,706...35,486,475
JBrowse link
G H2-K1 histocompatibility 2, K1, K region involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:34,214,986...34,219,316
Ensembl chr17:34,214,991...34,219,321
JBrowse link
G H2-L histocompatibility 2, D region locus L involved_in IBA GO_Central GO_REF:0000033
G H2-M1 histocompatibility 2, M region locus 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,979,922...36,983,089
Ensembl chr17:36,980,900...36,983,111
JBrowse link
G H2-M10.1 histocompatibility 2, M region locus 10.1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,633,752...36,637,042
Ensembl chr17:36,633,750...36,637,047
JBrowse link
G H2-M10.2 histocompatibility 2, M region locus 10.2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,595,173...36,597,313
Ensembl chr17:36,595,119...36,597,382
JBrowse link
G H2-M10.3 histocompatibility 2, M region locus 10.3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,675,896...36,679,309
Ensembl chr17:36,675,895...36,679,309
JBrowse link
G H2-M10.4 histocompatibility 2, M region locus 10.4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,769,809...36,773,221
Ensembl chr17:36,769,809...36,773,226
JBrowse link
G H2-M10.5 histocompatibility 2, M region locus 10.5 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:37,083,802...37,087,127
Ensembl chr17:37,083,802...37,087,126
JBrowse link
G H2-M10.6 histocompatibility 2, M region locus 10.6 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:37,123,067...37,126,458
Ensembl chr17:37,123,063...37,126,456
JBrowse link
G H2-M11 histocompatibility 2, M region locus 11 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,857,967...36,861,165
Ensembl chr17:36,857,967...36,860,142
JBrowse link
G H2-M2 histocompatibility 2, M region locus 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:37,791,742...37,794,445
Ensembl chr17:37,791,742...37,794,443
JBrowse link
G H2-M3 histocompatibility 2, M region locus 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:37,581,094...37,585,380
Ensembl chr17:37,581,111...37,585,375
JBrowse link
G H2-M5 histocompatibility 2, M region locus 5 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:37,294,677...37,308,847
Ensembl chr17:37,294,953...37,300,429
JBrowse link
G H2-M9 histocompatibility 2, M region locus 9 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,950,169...36,953,598
Ensembl chr17:36,950,177...36,953,558
JBrowse link
G H2-Q1 histocompatibility 2, Q region locus 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:35,539,503...35,547,118
Ensembl chr17:35,539,381...35,544,075
JBrowse link
G H2-Q10 histocompatibility 2, Q region locus 10 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:35,780,986...35,785,460
Ensembl chr17:35,780,986...35,785,460
JBrowse link
G H2-Q2 histocompatibility 2, Q region locus 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:35,561,283...35,565,740
Ensembl chr17:35,561,218...35,565,738
JBrowse link
G H2-Q4 histocompatibility 2, Q region locus 4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:35,598,593...35,603,650
Ensembl chr17:35,598,593...35,604,266
JBrowse link
G H2-Q6 histocompatibility 2, Q region locus 6 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:35,643,826...35,649,031
Ensembl chr17:35,643,826...35,649,031
JBrowse link
G H2-Q7 histocompatibility 2, Q region locus 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:35,658,131...35,662,749
Ensembl chr17:35,658,131...35,662,749
JBrowse link
G H2-Q8 histocompatibility 2, Q region locus 8 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:35,737,710...35,742,945 JBrowse link
G H2-Q9 histocompatibility 2, Q region locus 9 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:35,752,074...35,756,659 JBrowse link
G H2-T22 histocompatibility 2, T region locus 22 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,348,023...36,353,635
Ensembl chr17:36,348,020...36,353,639
JBrowse link
G H2-T23 histocompatibility 2, T region locus 23 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,340,869...36,343,593
Ensembl chr17:36,340,665...36,343,747
JBrowse link
G H2-T24 histocompatibility 2, T region locus 24 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,314,363...36,331,689
Ensembl chr17:36,316,587...36,331,452
JBrowse link
G H2-T26 histocompatibility 2, T region locus 26 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,454,704...36,479,490
Ensembl chr17:36,475,335...36,479,429
JBrowse link
G H2-T27 histocompatibility 2, T region locus 27 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,366,708...36,369,346
Ensembl chr17:36,366,708...36,369,263
JBrowse link
G H2-T3 histocompatibility 2, T region locus 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,496,463...36,501,043
Ensembl chr17:36,496,464...36,501,179
JBrowse link
G H60b histocompatibility 60b involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:22,149,373...22,164,748
Ensembl chr10:22,034,485...22,164,748
JBrowse link
G H60c histocompatibility 60c involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:3,206,202...3,218,091
Ensembl chr10:3,206,208...3,217,771
JBrowse link
G Raet1a retinoic acid early transcript 1, alpha involved_in IBA GO_Central GO_REF:0000033
G Raet1b retinoic acid early transcript beta involved_in IBA GO_Central GO_REF:0000033
G Raet1c retinoic acid early transcript gamma involved_in IBA GO_Central GO_REF:0000033
G Raet1d retinoic acid early transcript delta involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:22,181,145...22,250,042
Ensembl chr10:22,236,451...22,250,038
JBrowse link
G Raet1e retinoic acid early transcript 1E involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:22,034,441...22,059,820
Ensembl chr10:22,034,468...22,250,038
JBrowse link
G Ulbp1 UL16 binding protein 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:7,394,873...7,423,643
Ensembl chr10:7,390,362...7,423,638
JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class Ib term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 2410137M14Rik RIKEN cDNA 2410137M14 gene involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:37,288,593...37,292,129
Ensembl chr17:37,288,593...37,292,129
JBrowse link
G Azgp1 alpha-2-glycoprotein 1, zinc involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:137,979,783...137,988,495
Ensembl chr 5:137,979,782...137,988,495
JBrowse link
G Gm7030 predicted gene 7030 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,438,501...36,440,317
Ensembl chr17:36,420,611...36,440,317
JBrowse link
G H2-Bl histocompatibility 2, blastocyst involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,391,002...36,395,141
Ensembl chr17:36,391,007...36,395,115
JBrowse link
G H2-D1 histocompatibility 2, D region locus 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:35,482,070...35,486,473
Ensembl chr17:35,481,706...35,486,475
JBrowse link
G H2-K1 histocompatibility 2, K1, K region involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:34,214,986...34,219,316
Ensembl chr17:34,214,991...34,219,321
JBrowse link
G H2-L histocompatibility 2, D region locus L involved_in IBA GO_Central GO_REF:0000033
G H2-M1 histocompatibility 2, M region locus 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,979,922...36,983,089
Ensembl chr17:36,980,900...36,983,111
JBrowse link
G H2-M10.1 histocompatibility 2, M region locus 10.1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,633,752...36,637,042
Ensembl chr17:36,633,750...36,637,047
JBrowse link
G H2-M10.2 histocompatibility 2, M region locus 10.2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,595,173...36,597,313
Ensembl chr17:36,595,119...36,597,382
JBrowse link
G H2-M10.3 histocompatibility 2, M region locus 10.3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,675,896...36,679,309
Ensembl chr17:36,675,895...36,679,309
JBrowse link
G H2-M10.4 histocompatibility 2, M region locus 10.4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,769,809...36,773,221
Ensembl chr17:36,769,809...36,773,226
JBrowse link
G H2-M10.5 histocompatibility 2, M region locus 10.5 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:37,083,802...37,087,127
Ensembl chr17:37,083,802...37,087,126
JBrowse link
G H2-M10.6 histocompatibility 2, M region locus 10.6 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:37,123,067...37,126,458
Ensembl chr17:37,123,063...37,126,456
JBrowse link
G H2-M11 histocompatibility 2, M region locus 11 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,857,967...36,861,165
Ensembl chr17:36,857,967...36,860,142
JBrowse link
G H2-M2 histocompatibility 2, M region locus 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:37,791,742...37,794,445
Ensembl chr17:37,791,742...37,794,443
JBrowse link
G H2-M3 histocompatibility 2, M region locus 3 acts_upstream_of_or_within
involved_in
IDA
IBA
ISO
(PMID:8464890) MGI
GO_Central
PMID:8464890 GO_REF:0000033 GO_REF:0000119 NCBI chr17:37,581,094...37,585,380
Ensembl chr17:37,581,111...37,585,375
JBrowse link
G H2-M5 histocompatibility 2, M region locus 5 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:37,294,677...37,308,847
Ensembl chr17:37,294,953...37,300,429
JBrowse link
G H2-M9 histocompatibility 2, M region locus 9 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,950,169...36,953,598
Ensembl chr17:36,950,177...36,953,558
JBrowse link
G H2-Q1 histocompatibility 2, Q region locus 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:35,539,503...35,547,118
Ensembl chr17:35,539,381...35,544,075
JBrowse link
G H2-Q10 histocompatibility 2, Q region locus 10 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:35,780,986...35,785,460
Ensembl chr17:35,780,986...35,785,460
JBrowse link
G H2-Q2 histocompatibility 2, Q region locus 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:35,561,283...35,565,740
Ensembl chr17:35,561,218...35,565,738
JBrowse link
G H2-Q4 histocompatibility 2, Q region locus 4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:35,598,593...35,603,650
Ensembl chr17:35,598,593...35,604,266
JBrowse link
G H2-Q6 histocompatibility 2, Q region locus 6 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:35,643,826...35,649,031
Ensembl chr17:35,643,826...35,649,031
JBrowse link
G H2-Q7 histocompatibility 2, Q region locus 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:35,658,131...35,662,749
Ensembl chr17:35,658,131...35,662,749
JBrowse link
G H2-Q8 histocompatibility 2, Q region locus 8 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:35,737,710...35,742,945 JBrowse link
G H2-Q9 histocompatibility 2, Q region locus 9 acts_upstream_of_or_within
involved_in
IDA
IBA
(PMID:18541714) MGI
GO_Central
PMID:18541714 GO_REF:0000033 NCBI chr17:35,752,074...35,756,659 JBrowse link
G H2-T22 histocompatibility 2, T region locus 22 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,348,023...36,353,635
Ensembl chr17:36,348,020...36,353,639
JBrowse link
G H2-T23 histocompatibility 2, T region locus 23 involved_in ISO
IBA
GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr17:36,340,869...36,343,593
Ensembl chr17:36,340,665...36,343,747
JBrowse link
G H2-T24 histocompatibility 2, T region locus 24 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,314,363...36,331,689
Ensembl chr17:36,316,587...36,331,452
JBrowse link
G H2-T26 histocompatibility 2, T region locus 26 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,454,704...36,479,490
Ensembl chr17:36,475,335...36,479,429
JBrowse link
G H2-T27 histocompatibility 2, T region locus 27 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,366,708...36,369,346
Ensembl chr17:36,366,708...36,369,263
JBrowse link
G H2-T3 histocompatibility 2, T region locus 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:36,496,463...36,501,043
Ensembl chr17:36,496,464...36,501,179
JBrowse link
G H60b histocompatibility 60b involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:22,149,373...22,164,748
Ensembl chr10:22,034,485...22,164,748
JBrowse link
G H60c histocompatibility 60c involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:3,206,202...3,218,091
Ensembl chr10:3,206,208...3,217,771
JBrowse link
G Raet1a retinoic acid early transcript 1, alpha involved_in IBA GO_Central GO_REF:0000033
G Raet1b retinoic acid early transcript beta involved_in IBA GO_Central GO_REF:0000033
G Raet1c retinoic acid early transcript gamma involved_in IBA GO_Central GO_REF:0000033
G Raet1d retinoic acid early transcript delta involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:22,181,145...22,250,042
Ensembl chr10:22,236,451...22,250,038
JBrowse link
G Raet1e retinoic acid early transcript 1E involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:22,034,441...22,059,820
Ensembl chr10:22,034,468...22,250,038
JBrowse link
G Ulbp1 UL16 binding protein 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:7,394,873...7,423,643
Ensembl chr10:7,390,362...7,423,638
JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2-T23 histocompatibility 2, T region locus 23 acts_upstream_of_or_within IDA (PMID:1538753) MGI PMID:1538753 NCBI chr17:36,340,869...36,343,593
Ensembl chr17:36,340,665...36,343,747
JBrowse link
G Tap2 transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) acts_upstream_of_or_within
involved_in
IDA
ISO
(PMID:1538753) MGI
GO_Central
PMID:1538753 GO_REF:0000119 NCBI chr17:34,423,453...34,435,295
Ensembl chr17:34,422,501...34,435,295
JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2-Ea histocompatibility 2, class II antigen E alpha involved_in ISO GO_Central GO_REF:0000119 NCBI chr17:34,560,926...34,563,619
Ensembl chr17:34,560,926...34,563,618
JBrowse link
G H2-Eb1 histocompatibility 2, class II antigen E beta involved_in ISO (PMID:15322540) UniProt PMID:15322540 NCBI chr17:34,524,841...34,535,648
Ensembl chr17:34,524,841...34,535,648
JBrowse link
antigen processing and presentation, endogenous lipid antigen via MHC class Ib term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd1d1 CD1d1 antigen involved_in IBA
ISO
GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr 3:86,903,141...86,919,665
Ensembl chr 3:86,903,141...86,906,748
JBrowse link
G Cd1d2 CD1d2 antigen involved_in IBA
ISO
GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr 3:86,893,875...86,896,843
Ensembl chr 3:86,893,858...86,897,087
JBrowse link
negative regulation of antigen processing and presentation of endogenous peptide antigen via MHC class I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hfe homeostatic iron regulator involved_in ISO
IEA
GO_Central
Ensembl
GO_REF:0000107 GO_REF:0000119 NCBI chr13:23,886,017...23,894,837
Ensembl chr13:23,886,017...23,894,837
JBrowse link

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  biological_process 28630
    immune system process 3183
      antigen processing and presentation 142
        antigen processing and presentation of endogenous antigen 52
          antigen processing and presentation of endogenous peptide antigen + 49
          antigen processing and presentation, endogenous lipid antigen via MHC class Ib 2
paths to the root