Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:antigen processing and presentation of endogenous antigen
go back to main search page
Accession:GO:0019883 term browser browse the term
Definition:The process in which an antigen-presenting cell expresses antigen (peptide or lipid) of endogenous origin on its cell surface in association with an MHC protein complex.
Synonyms:exact_synonym: antigen presentation, endogenous antigen

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
antigen processing and presentation of endogenous antigen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG5 autophagy related 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:67,482,538...67,619,201
Ensembl chr13:67,482,595...67,617,902 		JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B2M beta-2-microglobulin involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:38,331,818...38,338,785
Ensembl chr26:38,331,442...38,338,809 		JBrowse link
G IDE insulin degrading enzyme involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:85,722,728...85,843,247
Ensembl chr 9:85,721,886...85,843,117 		JBrowse link
G TAP1 transporter 1, ATP binding cassette subfamily B member involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:39,252,000...39,260,195 JBrowse link
G TAP2 transporter 2, ATP binding cassette subfamily B member acts_upstream_of_or_within
involved_in		 ISO PMID:1758495
(PMID:8496691)
(PMID:1538751)		 MGI
UniProt		 PMID:1538751 PMID:1758495 PMID:8496691 RGD:1299069 NCBI chr17:39,266,870...39,277,658 JBrowse link
G TAPBP TAP binding protein involved_in IEA InterPro GO_REF:0000002 NCBI chr17:38,762,934...38,776,247
Ensembl chr17:38,763,206...38,773,768 		JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TAP2 transporter 2, ATP binding cassette subfamily B member acts_upstream_of_or_within ISO (PMID:1538753) MGI PMID:1538753 NCBI chr17:39,266,870...39,277,658 JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZGP1 alpha-2-glycoprotein 1, zinc-binding involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr28:13,104,262...13,120,329
Ensembl chr28:13,104,323...13,120,363 		JBrowse link
G LOC103221771 class I histocompatibility antigen, Gogo-B*0101 alpha chain-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:41,184,309...41,187,696 JBrowse link
G LOC103221775 patr class I histocompatibility antigen, B-2 alpha chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:41,028,313...41,032,381 JBrowse link
G LOC103221779 patr class I histocompatibility antigen, B-2 alpha chain-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:40,969,072...40,972,438 JBrowse link
G LOC103221781 class I histocompatibility antigen, Gogo-B*0101 alpha chain-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:40,916,562...40,919,866 JBrowse link
G LOC103221786 class I histocompatibility antigen, Gogo-B*0101 alpha chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:40,758,558...40,761,905 JBrowse link
G LOC103221837 popy class I histocompatibility antigen, alpha chain E involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:41,940,842...42,692,045
Ensembl chr17:41,941,869...41,946,176 		JBrowse link
G LOC103221863 mamu class I histocompatibility antigen, alpha chain F involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:42,899,211...42,903,274 JBrowse link
G LOC103240135 UL16-binding protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:21,498,223...21,505,004 JBrowse link
G LOC103240138 UL16-binding protein 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:21,522,045...21,524,874 JBrowse link
G LOC103240141 UL16-binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:21,625,381...21,638,933
Ensembl chr13:21,629,092...21,636,623 		JBrowse link
G LOC103240144 UL16-binding protein 2-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:21,651,944...21,659,099 JBrowse link
G LOC103247140 HLA class I histocompatibility antigen, A-11 alpha chain involved_in IEA TreeGrafter GO_REF:0000118
G LOC103247147 HLA class I histocompatibility antigen, B alpha chain-like involved_in IEA TreeGrafter GO_REF:0000118
G LOC119618283 patr class I histocompatibility antigen, alpha chain E involved_in IEA TreeGrafter GO_REF:0000118
G LOC119623226 HLA class I histocompatibility antigen, B alpha chain-like involved_in IEA TreeGrafter GO_REF:0000118
G LOC119623524 class I histocompatibility antigen, Gogo-B*0103 alpha chain-like involved_in IEA TreeGrafter GO_REF:0000118
G RAET1E retinoic acid early transcript 1E involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr13:21,738,263...21,740,910 JBrowse link
G RAET1G retinoic acid early transcript 1G involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr13:21,702,133...21,715,835 JBrowse link
G ULBP3 UL16 binding protein 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:77,468,549...77,491,049 JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class Ib term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZGP1 alpha-2-glycoprotein 1, zinc-binding involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr28:13,104,262...13,120,329
Ensembl chr28:13,104,323...13,120,363 		JBrowse link
G LOC103221771 class I histocompatibility antigen, Gogo-B*0101 alpha chain-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:41,184,309...41,187,696 JBrowse link
G LOC103221775 patr class I histocompatibility antigen, B-2 alpha chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:41,028,313...41,032,381 JBrowse link
G LOC103221779 patr class I histocompatibility antigen, B-2 alpha chain-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:40,969,072...40,972,438 JBrowse link
G LOC103221781 class I histocompatibility antigen, Gogo-B*0101 alpha chain-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:40,916,562...40,919,866 JBrowse link
G LOC103221786 class I histocompatibility antigen, Gogo-B*0101 alpha chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:40,758,558...40,761,905 JBrowse link
G LOC103221837 popy class I histocompatibility antigen, alpha chain E involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:41,940,842...42,692,045
Ensembl chr17:41,941,869...41,946,176 		JBrowse link
G LOC103221863 mamu class I histocompatibility antigen, alpha chain F involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:42,899,211...42,903,274 JBrowse link
G LOC103240135 UL16-binding protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:21,498,223...21,505,004 JBrowse link
G LOC103240138 UL16-binding protein 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:21,522,045...21,524,874 JBrowse link
G LOC103240141 UL16-binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:21,625,381...21,638,933
Ensembl chr13:21,629,092...21,636,623 		JBrowse link
G LOC103240144 UL16-binding protein 2-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:21,651,944...21,659,099 JBrowse link
G LOC103247140 HLA class I histocompatibility antigen, A-11 alpha chain involved_in IEA TreeGrafter GO_REF:0000118
G LOC103247147 HLA class I histocompatibility antigen, B alpha chain-like involved_in IEA TreeGrafter GO_REF:0000118
G LOC119618283 patr class I histocompatibility antigen, alpha chain E involved_in IEA TreeGrafter GO_REF:0000118
G LOC119623226 HLA class I histocompatibility antigen, B alpha chain-like involved_in IEA TreeGrafter GO_REF:0000118
G LOC119623524 class I histocompatibility antigen, Gogo-B*0103 alpha chain-like involved_in IEA TreeGrafter GO_REF:0000118
G RAET1E retinoic acid early transcript 1E involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr13:21,738,263...21,740,910 JBrowse link
G RAET1G retinoic acid early transcript 1G involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr13:21,702,133...21,715,835 JBrowse link
G ULBP3 UL16 binding protein 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:77,468,549...77,491,049 JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TAP2 transporter 2, ATP binding cassette subfamily B member involved_in
acts_upstream_of_or_within		 ISO (PMID:1538751)
(PMID:1538753)		 UniProt
MGI		 PMID:1538751 PMID:1538753 NCBI chr17:39,266,870...39,277,658 JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC103221700 HLA class II histocompatibility antigen, DR beta 3 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:39,471,058...39,484,265 JBrowse link
G LOC103247148 HLA class II histocompatibility antigen, DRB1 beta chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:39,556,020...39,564,488 JBrowse link
G LOC119618083 HLA class II histocompatibility antigen, DRB1 beta chain-like involved_in IEA Ensembl GO_REF:0000107
G MHC-DRA major histocompatibility complex, class II, DR alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:39,623,324...39,628,464
Ensembl chr17:39,622,402...39,629,261 		JBrowse link
antigen processing and presentation, endogenous lipid antigen via MHC class Ib term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD1B CD1b molecule involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:5,588,575...5,593,617
Ensembl chr20:5,590,274...5,593,364 		JBrowse link
G CD1C CD1c molecule involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:5,633,807...5,638,528
Ensembl chr20:5,634,457...5,637,860 		JBrowse link
G CD1D CD1d molecule involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:5,726,307...5,733,355
Ensembl chr20:5,727,049...5,730,061 		JBrowse link
G LOC103223791 T-cell surface glycoprotein CD1e, membrane-associated involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:5,573,905...5,588,338
Ensembl chr20:5,572,822...5,577,064 		JBrowse link
G LOC103225866 T-cell surface glycoprotein CD1a-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:5,665,732...5,669,282 JBrowse link
G LOC119623483 T-cell surface glycoprotein CD1a-like involved_in IEA TreeGrafter GO_REF:0000118
negative regulation of antigen processing and presentation of endogenous peptide antigen via MHC class I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HFE homeostatic iron regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:46,159,770...46,168,831
Ensembl chr17:46,156,685...46,164,649 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19829
    immune system process 2687
      antigen processing and presentation 121
        antigen processing and presentation of endogenous antigen 37
          antigen processing and presentation of endogenous peptide antigen + 30
          antigen processing and presentation, endogenous lipid antigen via MHC class Ib 6
paths to the root