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ONTOLOGY REPORT - ANNOTATIONS


Term:antigen processing and presentation
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Accession:GO:0019882 term browser browse the term
Definition:The process in which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex.
Synonyms:exact_synonym: antigen presentation;   antigen processing
 alt_id: GO:0030333
 xref: Wikipedia:Antigen_presentation


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antigen processing and presentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO (PMID:14557411) MGI PMID:14557411 NCBI chrNW_004955425:22,792,616...23,051,509
Ensembl chrNW_004955425:22,792,616...23,051,737
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 acts_upstream_of_or_within ISO (PMID:14557411) MGI PMID:14557411 NCBI chrNW_004955495:5,972,177...6,012,525
Ensembl chrNW_004955495:5,972,433...6,012,433
JBrowse link
G Cd74 CD74 molecule acts_upstream_of_or_within ISO (PMID:11754812), (PMID:3864916), (PMID:7985028)
(PMID:9432982)
MGI PMID:3864916 PMID:7985028 PMID:9432982 PMID:11754812 NCBI chrNW_004955415:4,129,151...4,138,336
Ensembl chrNW_004955415:4,129,254...4,137,826
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:23733868) MGI PMID:23733868 NCBI chrNW_004955417:23,798,044...24,067,759
Ensembl chrNW_004955417:23,798,393...24,067,100
JBrowse link
G Flt3 fms related receptor tyrosine kinase 3 acts_upstream_of_or_within ISO (PMID:20457904) MGI PMID:20457904 NCBI chrNW_004955497:7,357,533...7,441,215
Ensembl chrNW_004955497:7,357,212...7,461,439
JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:22665763) MGI PMID:22665763 NCBI chrNW_004955545:1,682,097...1,689,373
Ensembl chrNW_004955545:1,682,097...1,689,376
JBrowse link
G Ifng interferon gamma acts_upstream_of_or_within ISO (PMID:15356141) MGI PMID:15356141 NCBI chrNW_004955458:14,643,333...14,648,020
Ensembl chrNW_004955458:14,643,313...14,648,045
JBrowse link
G LOC102023843 HLA class II histocompatibility antigen, DM alpha chain acts_upstream_of_or_within ISO (PMID:9432982)
(PMID:11148202), (PMID:7584146), (PMID:7985028)
MGI PMID:7584146 PMID:7985028 PMID:9432982 PMID:11148202 NCBI chrNW_004955437:1,558,806...1,562,294
Ensembl chrNW_004955437:1,558,911...1,562,162
JBrowse link
G LOC102025166 HLA class II histocompatibility antigen, DO alpha chain acts_upstream_of_or_within ISO (PMID:11069069) MGI PMID:11069069 NCBI chrNW_004955437:1,603,395...1,606,800
Ensembl chrNW_004955437:1,603,168...1,607,134
JBrowse link
G Psap prosaposin acts_upstream_of_or_within ISO (PMID:14684827) MGI PMID:14684827 NCBI chrNW_004955437:19,667,252...19,683,669 JBrowse link
G Psmb8 proteasome 20S subunit beta 8 acts_upstream_of_or_within ISO (PMID:15356141) MGI PMID:15356141 NCBI chrNW_004955437:1,500,477...1,504,072
Ensembl chrNW_004955437:1,500,477...1,504,072
JBrowse link
G Psmb9 proteasome 20S subunit beta 9 acts_upstream_of_or_within ISO (PMID:15356141) MGI PMID:15356141 NCBI chrNW_004955437:1,513,425...1,516,164
Ensembl chrNW_004955437:1,513,418...1,516,164
JBrowse link
G Rab10 RAB10, member RAS oncogene family involved_in ISO (PMID:19717423) UniProt PMID:19717423 NCBI chrNW_004955469:8,057,235...8,138,983
Ensembl chrNW_004955469:8,057,235...8,138,983
JBrowse link
G Rab27a RAB27A, member RAS oncogene family involved_in ISO (PMID:19717423) UniProt PMID:19717423 NCBI chrNW_004955409:588,725...621,874
Ensembl chrNW_004955409:588,254...621,874
JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in ISO (PMID:19717423) UniProt PMID:19717423 NCBI chrNW_004955436:14,171,123...14,177,255
Ensembl chrNW_004955436:14,171,123...14,177,577
JBrowse link
G Rab33a RAB33A, member RAS oncogene family involved_in ISO (PMID:19717423) UniProt PMID:19717423 NCBI chrNW_004955473:4,875,230...4,891,898
Ensembl chrNW_004955473:4,875,202...4,887,177
JBrowse link
G Rab34 RAB34, member RAS oncogene family involved_in ISO (PMID:19717423) UniProt PMID:19717423 NCBI chrNW_004955481:4,441,290...4,445,969
Ensembl chrNW_004955481:4,441,407...4,445,969
JBrowse link
G Rab35 RAB35, member RAS oncogene family involved_in ISO (PMID:19717423) UniProt PMID:19717423 NCBI chrNW_004955455:11,484,557...11,502,630
Ensembl chrNW_004955455:11,484,557...11,502,630
JBrowse link
G Rab3b RAB3B, member RAS oncogene family involved_in ISO (PMID:19717423) UniProt PMID:19717423 NCBI chrNW_004955464:7,117,908...7,177,138
Ensembl chrNW_004955464:7,117,883...7,177,534
JBrowse link
G Rab3c RAB3C, member RAS oncogene family involved_in ISO (PMID:19717423) UniProt PMID:19717423 NCBI chrNW_004955446:9,335,298...9,577,919
Ensembl chrNW_004955446:9,343,388...9,578,209
JBrowse link
G Rab4a RAB4A, member RAS oncogene family involved_in ISO (PMID:19717423) UniProt PMID:19717423 NCBI chrNW_004955492:8,715,252...8,743,432
Ensembl chrNW_004955492:8,713,968...8,743,434
JBrowse link
G Rab5b RAB5B, member RAS oncogene family involved_in ISO (PMID:19717423) UniProt PMID:19717423 NCBI chrNW_004955458:3,563,363...3,582,620
Ensembl chrNW_004955458:3,576,247...3,580,192
JBrowse link
G Rab6a RAB6A, member RAS oncogene family involved_in ISO (PMID:19717423) UniProt PMID:19717423 NCBI chrNW_004955414:17,758,071...17,806,727
Ensembl chrNW_004955414:17,758,071...17,806,727
JBrowse link
G Rab8b RAB8B, member RAS oncogene family involved_in ISO (PMID:19717423) UniProt PMID:19717423 NCBI chrNW_004955450:12,026,784...12,095,332
Ensembl chrNW_004955450:12,026,784...12,095,422
JBrowse link
G Relb RELB proto-oncogene, NF-kB subunit acts_upstream_of_or_within ISO (PMID:7845467) MGI PMID:7845467 NCBI chrNW_004955555:2,060,533...2,086,229
Ensembl chrNW_004955555:2,060,533...2,086,229
JBrowse link
G Unc93b1 unc-93 homolog B1, TLR signaling regulator acts_upstream_of_or_within ISO (PMID:20457904) MGI PMID:20457904 NCBI chrNW_004955422:17,814,174...17,823,945
Ensembl chrNW_004955422:17,814,079...17,824,190
JBrowse link
G Wdfy4 WDFY family member 4 acts_upstream_of_or_within ISO (PMID:30409884) MGI PMID:30409884 NCBI chrNW_004955556:1,178,970...1,421,139
Ensembl chrNW_004955556:1,177,117...1,421,228
JBrowse link
antigen processing and presentation following phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ARF like GTPase 8B involved_in ISO (PMID:21802320) UniProt PMID:21802320 NCBI chrNW_004955421:8,231,337...8,276,907
Ensembl chrNW_004955421:8,231,582...8,276,907
JBrowse link
antigen processing and presentation of endogenous antigen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg5 autophagy related 5 acts_upstream_of_or_within ISO (PMID:23382543) MGI PMID:23382543 NCBI chrNW_004955411:31,501,191...31,646,407
Ensembl chrNW_004955411:31,522,420...31,646,827
JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B2m beta-2-microglobulin involved_in ISO (PMID:24643698) BHF-UCL PMID:24643698 NCBI chrNW_004955416:11,205,503...11,211,325
Ensembl chrNW_004955416:11,204,849...11,215,568
JBrowse link
G Ide insulin degrading enzyme involved_in ISO (PMID:20364150) UniProt PMID:20364150 NCBI chrNW_004955425:819,461...926,440
Ensembl chrNW_004955425:847,615...926,318
JBrowse link
G Tap1 transporter 1, ATP binding cassette subfamily B member involved_in ISO (PMID:11133832) UniProt PMID:11133832 NCBI chrNW_004955437:1,504,549...1,511,110
Ensembl chrNW_004955437:1,504,947...1,511,097
JBrowse link
G Tap2 transporter 2, ATP binding cassette subfamily B member involved_in
acts_upstream_of_or_within
ISO (PMID:8496691)
PMID:1758495
(PMID:1538751)
UniProt
MGI
PMID:1538751 PMID:1758495 PMID:8496691 RGD:1299069 NCBI chrNW_004955437:1,480,217...1,499,032
Ensembl chrNW_004955437:1,477,341...1,498,575
JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tap2 transporter 2, ATP binding cassette subfamily B member acts_upstream_of_or_within ISO (PMID:1538753) MGI PMID:1538753 NCBI chrNW_004955437:1,480,217...1,499,032
Ensembl chrNW_004955437:1,477,341...1,498,575
JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tap2 transporter 2, ATP binding cassette subfamily B member involved_in
acts_upstream_of_or_within
ISO (PMID:1538751)
(PMID:1538753)
UniProt
MGI
PMID:1538751 PMID:1538753 NCBI chrNW_004955437:1,480,217...1,499,032
Ensembl chrNW_004955437:1,477,341...1,498,575
JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC102019320 mamu class II histocompatibility antigen, DR alpha chain involved_in ISO (PMID:15322540) UniProt PMID:15322540 NCBI chrNW_004955437:1,109,735...1,114,742
Ensembl chrNW_004955437:1,109,713...1,114,802
JBrowse link
antigen processing and presentation of exogenous antigen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC102013688 major histocompatibility complex class I-related gene protein involved_in ISO (PMID:27043408) UniProt PMID:27043408 NCBI chrNW_004955406:20,098,544...20,117,065
Ensembl chrNW_004955406:20,098,538...20,125,057
JBrowse link
G Psme1 proteasome activator subunit 1 acts_upstream_of_or_within ISO (PMID:15944286) MGI PMID:15944286 NCBI chrNW_004955409:36,262,114...36,264,996
Ensembl chrNW_004955409:36,262,114...36,264,994
JBrowse link
G Psme2 proteasome activator subunit 2 acts_upstream_of_or_within ISO (PMID:15944286) MGI PMID:15944286 NCBI chrNW_004955409:36,252,847...36,257,021 JBrowse link
antigen processing and presentation of exogenous peptide antigen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mpeg1 macrophage expressed 1 involved_in ISO (PMID:35471730) UniProt PMID:35471730 NCBI chrNW_004955511:3,783,200...3,787,300
Ensembl chrNW_004955511:3,785,019...3,787,154
JBrowse link
antigen processing and presentation of exogenous peptide antigen via MHC class I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fcer1g Fc fragment of IgE receptor Ig acts_upstream_of_or_within ISO (PMID:11911824) MGI PMID:11911824 NCBI chrNW_004955468:12,971,931...12,975,206
Ensembl chrNW_004955468:12,971,931...12,975,206
JBrowse link
G Ifi30 IFI30 lysosomal thiol reductase involved_in ISO (PMID:20538950) UniProt PMID:20538950 NCBI chrNW_004955524:3,229,024...3,230,955
Ensembl chrNW_004955524:3,229,257...3,231,825
JBrowse link
G Mfsd6 major facilitator superfamily domain containing 6 acts_upstream_of_or_within ISO (PMID:17010536) MGI PMID:17010536 NCBI chrNW_004955403:8,624,211...8,683,815
Ensembl chrNW_004955403:8,625,959...8,683,815
JBrowse link
G Mpeg1 macrophage expressed 1 involved_in ISO (PMID:37347855) UniProt PMID:37347855 NCBI chrNW_004955511:3,783,200...3,787,300
Ensembl chrNW_004955511:3,785,019...3,787,154
JBrowse link
antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tapbp TAP binding protein involved_in
acts_upstream_of_or_within
ISO (PMID:9716645) UniProt
MGI
PMID:9716645 NCBI chrNW_004955437:1,860,057...1,865,645
Ensembl chrNW_004955437:1,858,328...1,866,233
JBrowse link
antigen processing and presentation of exogenous peptide antigen via MHC class II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd74 CD74 molecule acts_upstream_of_or_within ISO (PMID:7679955), (PMID:8598040) MGI PMID:7679955 PMID:8598040 NCBI chrNW_004955415:4,129,151...4,138,336
Ensembl chrNW_004955415:4,129,254...4,137,826
JBrowse link
G Ctse cathepsin E involved_in ISO (PMID:8765029)
(PMID:11719510)
PMID:8491674
UniProt PMID:8491674 PMID:8765029 PMID:11719510 RGD:8553254 NCBI chrNW_004955406:41,641,412...41,653,261
Ensembl chrNW_004955406:41,641,311...41,653,296
JBrowse link
G Ctss cathepsin S involved_in ISO (PMID:30612035) UniProt PMID:30612035 NCBI chrNW_004955413:99,279...124,793
Ensembl chrNW_004955413:99,159...124,042
JBrowse link
G Fcer1g Fc fragment of IgE receptor Ig acts_upstream_of_or_within ISO (PMID:14643301) MGI PMID:14643301 NCBI chrNW_004955468:12,971,931...12,975,206
Ensembl chrNW_004955468:12,971,931...12,975,206
JBrowse link
G Fcgr2b Fc fragment of IgG receptor IIb acts_upstream_of_or_within ISO (PMID:14643301) MGI PMID:14643301 NCBI chrNW_004955462:14,639,396...14,653,801 JBrowse link
G Ifi30 IFI30 lysosomal thiol reductase acts_upstream_of_or_within ISO (PMID:11701933) MGI PMID:11701933 NCBI chrNW_004955524:3,229,024...3,230,955
Ensembl chrNW_004955524:3,229,257...3,231,825
JBrowse link
G Lgmn legumain involved_in ISO (PMID:9872320) UniProt PMID:9872320 NCBI chrNW_004955438:14,905,856...14,938,722
Ensembl chrNW_004955438:14,905,856...14,939,256
JBrowse link
G LOC102019320 mamu class II histocompatibility antigen, DR alpha chain involved_in
acts_upstream_of_or_within
ISO (PMID:15265931)
(PMID:11027433), (PMID:11714799)
UniProt
MGI
PMID:11027433 PMID:11714799 PMID:15265931 NCBI chrNW_004955437:1,109,735...1,114,742
Ensembl chrNW_004955437:1,109,713...1,114,802
JBrowse link
G LOC102023521 HLA class II histocompatibility antigen, DM beta chain involved_in ISO (PMID:8139689) UniProt PMID:8139689 NCBI chrNW_004955437:1,544,906...1,551,412
Ensembl chrNW_004955437:1,541,491...1,551,159
JBrowse link
G LOC102023843 HLA class II histocompatibility antigen, DM alpha chain acts_upstream_of_or_within ISO (PMID:8598041)
(PMID:8598040)
(PMID:11714799)
(PMID:11027433)
MGI PMID:8598040 PMID:8598041 PMID:11027433 PMID:11714799 NCBI chrNW_004955437:1,558,806...1,562,294
Ensembl chrNW_004955437:1,558,911...1,562,162
JBrowse link
G LOC102025166 HLA class II histocompatibility antigen, DO alpha chain acts_upstream_of_or_within ISO (PMID:9492004) MGI PMID:9492004 NCBI chrNW_004955437:1,603,395...1,606,800
Ensembl chrNW_004955437:1,603,168...1,607,134
JBrowse link
G LOC102025724 HLA class II histocompatibility antigen, DP alpha 1 chain involved_in ISO (PMID:20356827) UniProt PMID:20356827 NCBI chrNW_004955437:1,644,037...1,657,094
Ensembl chrNW_004955437:1,643,238...1,651,071
JBrowse link
G LOC102026469 HLA class II histocompatibility antigen, DP beta 1 chain involved_in ISO (PMID:32341563)
(PMID:20356827)
UniProt PMID:20356827 PMID:32341563 NCBI chrNW_004955437:1,655,092...1,666,552
Ensembl chrNW_004955437:1,635,538...1,669,042
JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO (PMID:30612035) UniProt PMID:30612035 NCBI chrNW_004955457:6,749,226...6,841,855
Ensembl chrNW_004955457:6,748,534...6,842,489
JBrowse link
G Traf6 TNF receptor associated factor 6 acts_upstream_of_or_within ISO (PMID:14499111) MGI PMID:14499111 NCBI chrNW_004955422:9,925,765...9,950,354
Ensembl chrNW_004955422:9,932,680...9,949,100
JBrowse link
G Unc93b1 unc-93 homolog B1, TLR signaling regulator acts_upstream_of_or_within ISO (PMID:16415873) MGI PMID:16415873 NCBI chrNW_004955422:17,814,174...17,823,945
Ensembl chrNW_004955422:17,814,079...17,824,190
JBrowse link
antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B2m beta-2-microglobulin acts_upstream_of_or_within ISO (PMID:16299293) MGI PMID:16299293 NCBI chrNW_004955416:11,205,503...11,211,325
Ensembl chrNW_004955416:11,204,849...11,215,568
JBrowse link
G Tap2 transporter 2, ATP binding cassette subfamily B member acts_upstream_of_or_within ISO (PMID:16299293) MGI PMID:16299293 NCBI chrNW_004955437:1,480,217...1,499,032
Ensembl chrNW_004955437:1,477,341...1,498,575
JBrowse link
antigen processing and presentation of peptide antigen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctss cathepsin S involved_in ISO (PMID:8612130) CACAO PMID:8612130 NCBI chrNW_004955413:99,279...124,793
Ensembl chrNW_004955413:99,159...124,042
JBrowse link
G Slc11a1 solute carrier family 11 member 1 acts_upstream_of_or_within ISO (PMID:17620357) MGI PMID:17620357 NCBI chrNW_004955453:14,980,562...14,995,118
Ensembl chrNW_004955453:14,980,562...14,995,608
JBrowse link
antigen processing and presentation of peptide antigen via MHC class I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb9 ATP binding cassette subfamily B member 9 NOT|involved_in ISO (PMID:17977821) UniProt PMID:17977821 NCBI chrNW_004955482:5,817,334...5,838,642
Ensembl chrNW_004955482:5,817,334...5,837,220
JBrowse link
antigen processing and presentation of peptide antigen via MHC class II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Marchf1 membrane associated ring-CH-type finger 1 involved_in ISO (PMID:18389477)
(PMID:17255932), (PMID:19917682)
UniProt PMID:17255932 PMID:18389477 PMID:19917682 NCBI chrNW_004955403:41,187,039...41,484,734
Ensembl chrNW_004955403:41,060,246...41,484,734
JBrowse link
G Marchf8 membrane associated ring-CH-type finger 8 involved_in ISO (PMID:16785530) UniProt PMID:16785530 NCBI chrNW_004955546:2,558,027...2,641,108 JBrowse link
antigen processing and presentation of peptide or polysaccharide antigen via MHC class II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC102019320 mamu class II histocompatibility antigen, DR alpha chain involved_in ISO (PMID:21502329) UniProt PMID:21502329 NCBI chrNW_004955437:1,109,735...1,114,742
Ensembl chrNW_004955437:1,109,713...1,114,802
JBrowse link
antigen processing and presentation of polysaccharide antigen via MHC class II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ARF like GTPase 8B involved_in ISO (PMID:25637027) UniProt PMID:25637027 NCBI chrNW_004955421:8,231,337...8,276,907
Ensembl chrNW_004955421:8,231,582...8,276,907
JBrowse link
antigen processing and presentation, exogenous lipid antigen via MHC class Ib term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO (PMID:14557411) MGI PMID:14557411 NCBI chrNW_004955425:22,792,616...23,051,509
Ensembl chrNW_004955425:22,792,616...23,051,737
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 acts_upstream_of_or_within ISO (PMID:14557411) MGI PMID:14557411 NCBI chrNW_004955495:5,972,177...6,012,525
Ensembl chrNW_004955495:5,972,433...6,012,433
JBrowse link
B cell antigen processing and presentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fcer2 Fc fragment of IgE receptor II involved_in ISO (PMID:2167225) UniProt PMID:2167225 NCBI chrNW_004955563:1,587,471...1,596,707
Ensembl chrNW_004955563:1,587,396...1,596,063
JBrowse link
dendritic cell antigen processing and presentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mpeg1 macrophage expressed 1 involved_in ISO (PMID:37347855) UniProt PMID:37347855 NCBI chrNW_004955511:3,783,200...3,787,300
Ensembl chrNW_004955511:3,785,019...3,787,154
JBrowse link
myeloid dendritic cell antigen processing and presentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC102019320 mamu class II histocompatibility antigen, DR alpha chain involved_in ISO (PMID:29884618) UniProt PMID:29884618 NCBI chrNW_004955437:1,109,735...1,114,742
Ensembl chrNW_004955437:1,109,713...1,114,802
JBrowse link
negative regulation of antigen processing and presentation of endogenous peptide antigen via MHC class I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hfe homeostatic iron regulator involved_in ISO (PMID:24643698) BHF-UCL PMID:24643698 NCBI chrNW_004955483:933,269...941,070
Ensembl chrNW_004955483:932,352...941,143
JBrowse link
negative regulation of antigen processing and presentation of peptide antigen via MHC class I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tapbpl TAP binding protein like involved_in ISO (PMID:23401559) UniProt PMID:23401559 NCBI chrNW_004955413:4,108,044...4,116,413
Ensembl chrNW_004955413:4,108,052...4,115,760
JBrowse link
negative regulation of antigen processing and presentation of peptide antigen via MHC class II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC102025166 HLA class II histocompatibility antigen, DO alpha chain involved_in ISO (PMID:22733780) UniProt PMID:22733780 NCBI chrNW_004955437:1,603,395...1,606,800
Ensembl chrNW_004955437:1,603,168...1,607,134
JBrowse link
negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thbs1 thrombospondin 1 involved_in ISO (PMID:16882710) BHF-UCL PMID:16882710 NCBI chrNW_004955416:6,490,034...6,506,419
Ensembl chrNW_004955416:6,489,451...6,506,419
JBrowse link
negative regulation of dendritic cell antigen processing and presentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd68 CD68 molecule involved_in ISO (PMID:21572087) ARUK-UCL PMID:21572087 NCBI chrNW_004955467:9,340,490...9,343,912
Ensembl chrNW_004955467:9,341,364...9,343,836
JBrowse link
G Fgl2 fibrinogen like 2 acts_upstream_of_or_within ISO (PMID:29341118) MGI PMID:29341118 NCBI chrNW_004955410:7,899,263...7,903,499
Ensembl chrNW_004955410:7,899,309...7,902,722
JBrowse link
G Thbs1 thrombospondin 1 involved_in ISO (PMID:16882710) BHF-UCL PMID:16882710 NCBI chrNW_004955416:6,490,034...6,506,419
Ensembl chrNW_004955416:6,489,451...6,506,419
JBrowse link
negative regulation of macrophage antigen processing and presentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgl2 fibrinogen like 2 acts_upstream_of_or_within ISO (PMID:29341118) MGI PMID:29341118 NCBI chrNW_004955410:7,899,263...7,903,499
Ensembl chrNW_004955410:7,899,309...7,902,722
JBrowse link
peptide antigen assembly with MHC class I protein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B2m beta-2-microglobulin involved_in ISO (PMID:36104323) UniProt PMID:36104323 NCBI chrNW_004955416:11,205,503...11,211,325
Ensembl chrNW_004955416:11,204,849...11,215,568
JBrowse link
G Calr calreticulin involved_in ISO (PMID:35948544)
(PMID:11825569)
UniProt
BHF-UCL
PMID:11825569 PMID:35948544 NCBI chrNW_004955415:31,985,147...31,989,372
Ensembl chrNW_004955415:31,985,147...31,989,372
JBrowse link
G Pdia3 protein disulfide isomerase family A member 3 involved_in ISO (PMID:17603487) ComplexPortal PMID:17603487 NCBI chrNW_004955416:10,197,957...10,221,104
Ensembl chrNW_004955416:10,198,099...10,220,792
JBrowse link
G Tapbp TAP binding protein involved_in ISO (PMID:10636848), (PMID:17603487) ComplexPortal PMID:10636848 PMID:17603487 NCBI chrNW_004955437:1,860,057...1,865,645
Ensembl chrNW_004955437:1,858,328...1,866,233
JBrowse link
G Tapbpl TAP binding protein like involved_in ISO (PMID:26869717) UniProt PMID:26869717 NCBI chrNW_004955413:4,108,044...4,116,413
Ensembl chrNW_004955413:4,108,052...4,115,760
JBrowse link
peptide antigen assembly with MHC class II protein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC102019320 mamu class II histocompatibility antigen, DR alpha chain involved_in ISO (PMID:1448172), (PMID:22733780), (PMID:7606781) UniProt PMID:1448172 PMID:7606781 PMID:22733780 NCBI chrNW_004955437:1,109,735...1,114,742
Ensembl chrNW_004955437:1,109,713...1,114,802
JBrowse link
G LOC102023521 HLA class II histocompatibility antigen, DM beta chain involved_in ISO (PMID:22733780), (PMID:23260142), (PMID:7606781), (PMID:9075930) UniProt PMID:7606781 PMID:9075930 PMID:22733780 PMID:23260142 NCBI chrNW_004955437:1,544,906...1,551,412
Ensembl chrNW_004955437:1,541,491...1,551,159
JBrowse link
G LOC102023843 HLA class II histocompatibility antigen, DM alpha chain involved_in ISO (PMID:22733780), (PMID:23260142), (PMID:7606781), (PMID:9075930) UniProt PMID:7606781 PMID:9075930 PMID:22733780 PMID:23260142 NCBI chrNW_004955437:1,558,806...1,562,294
Ensembl chrNW_004955437:1,558,911...1,562,162
JBrowse link
peptide antigen stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tapbp TAP binding protein involved_in ISO (PMID:12594855) UniProt PMID:12594855 NCBI chrNW_004955437:1,860,057...1,865,645
Ensembl chrNW_004955437:1,858,328...1,866,233
JBrowse link
peptide antigen transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tap2 transporter 2, ATP binding cassette subfamily B member involved_in ISO (PMID:8496691)
(PMID:1538751)
UniProt PMID:1538751 PMID:8496691 NCBI chrNW_004955437:1,480,217...1,499,032
Ensembl chrNW_004955437:1,477,341...1,498,575
JBrowse link
positive regulation of antigen processing and presentation of peptide antigen via MHC class I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tap2 transporter 2, ATP binding cassette subfamily B member ISO RGD PMID:1758495 RGD:1299069 NCBI chrNW_004955437:1,480,217...1,499,032
Ensembl chrNW_004955437:1,477,341...1,498,575
JBrowse link
positive regulation of antigen processing and presentation of peptide antigen via MHC class II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (PMID:11602640) BHF-UCL PMID:11602640 NCBI chrNW_004955437:7,780,886...7,785,597
Ensembl chrNW_004955437:7,780,679...7,785,697
JBrowse link
positive regulation of dendritic cell antigen processing and presentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl19 C-C motif chemokine ligand 19 involved_in ISO (PMID:15845453) BHF-UCL PMID:15845453 NCBI chrNW_004955472:1,444,598...1,446,488
Ensembl chrNW_004955472:1,444,316...1,446,490
JBrowse link
G Ccl21 C-C motif chemokine ligand 21 involved_in ISO (PMID:15845453) BHF-UCL PMID:15845453 NCBI chrNW_004955472:1,427,660...1,428,771
Ensembl chrNW_004955472:1,427,710...1,429,102
JBrowse link
G Ccr7 C-C motif chemokine receptor 7 involved_in ISO (PMID:15845453) BHF-UCL PMID:15845453 NCBI chrNW_004955451:15,086,119...15,101,862
Ensembl chrNW_004955451:15,086,119...15,095,561
JBrowse link
G Cd74 CD74 molecule involved_in ISO (PMID:18003616) BHF-UCL PMID:18003616 NCBI chrNW_004955415:4,129,151...4,138,336
Ensembl chrNW_004955415:4,129,254...4,137,826
JBrowse link
G Nod1 nucleotide binding oligomerization domain containing 1 involved_in ISO (PMID:20008287) BHF-UCL PMID:20008287 NCBI chrNW_004955410:31,681,191...31,725,173
Ensembl chrNW_004955410:31,681,077...31,725,173
JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 involved_in ISO (PMID:20008287) BHF-UCL PMID:20008287 NCBI chrNW_004955433:8,746,213...8,780,119
Ensembl chrNW_004955433:8,746,004...8,782,710
JBrowse link
G Slc11a1 solute carrier family 11 member 1 acts_upstream_of_or_within ISO (PMID:18984740) MGI PMID:18984740 NCBI chrNW_004955453:14,980,562...14,995,118
Ensembl chrNW_004955453:14,980,562...14,995,608
JBrowse link
positive regulation of macrophage antigen processing and presentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam3d FAM3 metabolism regulating signaling molecule D acts_upstream_of_or_within ISO (PMID:29853563) MGI PMID:29853563 NCBI chrNW_004955430:1,541,896...1,569,391
Ensembl chrNW_004955430:1,541,751...1,571,654
JBrowse link
regulation of antigen processing and presentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cst7 cystatin F acts_upstream_of ISO (PMID:22365146) ARUK-UCL PMID:22365146 NCBI chrNW_004955415:31,082,978...31,086,379
Ensembl chrNW_004955415:31,082,978...31,086,379
JBrowse link
G Ctss cathepsin S involved_in ISO (PMID:22365146) ARUK-UCL PMID:22365146 NCBI chrNW_004955413:99,279...124,793
Ensembl chrNW_004955413:99,159...124,042
JBrowse link
G Ptpn22 protein tyrosine phosphatase non-receptor type 22 NOT|involved_in ISO (PMID:23871208) UniProt PMID:23871208 NCBI chrNW_004955435:17,082,762...17,139,067 JBrowse link
G Ythdf1 YTH N6-methyladenosine RNA binding protein F1 involved_in ISO (PMID:30728504) UniProt PMID:30728504 NCBI chrNW_004955528:935,182...951,722
Ensembl chrNW_004955528:935,182...951,722
JBrowse link
regulation of T cell antigen processing and presentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Was WASP actin nucleation promoting factor involved_in ISO (PMID:22804504) CACAO PMID:22804504 NCBI chrNW_004955543:243,618...253,489
Ensembl chrNW_004955543:247,631...253,274
JBrowse link
T cell antigen processing and presentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Icam1 intercellular adhesion molecule 1 acts_upstream_of_or_within ISO (PMID:2479693) MGI PMID:2479693 NCBI chrNW_004955495:1,561,464...1,573,282
Ensembl chrNW_004955495:1,561,714...1,574,755
JBrowse link
G Rftn1 raftlin, lipid raft linker 1 involved_in ISO (PMID:19414744) UniProt PMID:19414744 NCBI chrNW_004955430:8,605,057...8,801,187
Ensembl chrNW_004955430:8,603,401...8,779,896
JBrowse link
G Treml4 triggering receptor expressed on myeloid cells like 4 acts_upstream_of_or_within ISO (PMID:22210914) MGI PMID:22210914 NCBI chrNW_004955437:7,827,329...7,846,406 JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO (PMID:24218451) MGI PMID:24218451 NCBI chrNW_004955532:533,877...535,767
Ensembl chrNW_004955532:533,877...535,767
JBrowse link
G Unc93b1 unc-93 homolog B1, TLR signaling regulator acts_upstream_of_or_within ISO (PMID:16415873) MGI PMID:16415873 NCBI chrNW_004955422:17,814,174...17,823,945
Ensembl chrNW_004955422:17,814,079...17,824,190
JBrowse link

Term paths to the root