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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine nucleobase biosynthetic process
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Accession:GO:0019856 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases.
Synonyms:exact_synonym: pyrimidine base anabolism;   pyrimidine base biosynthesis;   pyrimidine base biosynthetic process;   pyrimidine base formation;   pyrimidine base synthesis


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pyrimidine nucleobase biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctps1 CTP synthase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:139,372,349...139,440,441
Ensembl chr 5:134,125,025...134,154,180 		JBrowse link
G Ctps2 CTP synthase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:31,645,873...31,786,733
Ensembl chr  X:31,645,873...31,786,733 		JBrowse link
'de novo' pyrimidine nucleobase biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IDA
IBA
ISO		 GO_REF:0000033
(PMID:24332717)		 GO_Central
RGD		 PMID:24332717 PMID:1476792 GO_REF:0000033, RGD:5132591 NCBI chr 6:31,012,091...31,035,098
Ensembl chr 6:25,292,133...25,319,861 		JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:133,717,073...133,744,623
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:76,063,863...76,186,739
Ensembl chr 9:68,614,153...68,737,033 		JBrowse link
G Dhodh dihydroorotate dehydrogenase involved_in IDA
IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central
RGD		 PMID:1476792 GO_REF:0000002 GO_REF:0000033, RGD:5132591 NCBI chr19:54,460,636...54,483,049
Ensembl chr19:37,558,177...37,591,654 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in IEA
ISO		 GO_REF:0000107
(PMID:23429704)		 Ensembl
RGD		 PMID:23429704 GO_REF:0000107 NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:158,884,804...158,994,311 		JBrowse link
G Umps uridine monophosphate synthetase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:80,311,269...80,321,678
Ensembl chr11:66,806,045...66,821,903 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20546
    cellular process 19536
      metabolic process 12171
        biosynthetic process 8663
          nucleobase biosynthetic process 17
            pyrimidine nucleobase biosynthetic process 8
              'de novo' pyrimidine nucleobase biosynthetic process 6
              cytosine biosynthetic process 0
              pyrimidine nucleobase salvage + 0
              thymine biosynthetic process 0
              uracil biosynthetic process + 0
Path 2
Term Annotations click to browse term
  biological_process 20546
    cellular process 19536
      metabolic process 12171
        primary metabolic process 10746
          nucleobase-containing compound metabolic process 5951
            nucleobase-containing small molecule metabolic process 731
              nucleobase metabolic process 45
                pyrimidine nucleobase metabolic process 22
                  pyrimidine nucleobase biosynthetic process 8
                    'de novo' pyrimidine nucleobase biosynthetic process 6
                    cytosine biosynthetic process 0
                    pyrimidine nucleobase salvage + 0
                    thymine biosynthetic process 0
                    uracil biosynthetic process + 0
paths to the root