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ONTOLOGY REPORT - ANNOTATIONS

Term:rRNA binding
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Accession:GO:0019843 term browser browse the term
Definition:Binding to a ribosomal RNA.
Synonyms:narrow_synonym: base pairing with rRNA
 alt_id: GO:0000944


show annotations for term's descendants           Sort by:
rRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07014676.1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr14:23,647,609...23,648,702 JBrowse link
G AABR07026048.1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr16:57,429,904...57,430,428 JBrowse link
G AABR07029559.1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr17:78,276,826...78,283,880 JBrowse link
G AABR07047593.1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 6:90,647,276...90,648,788 JBrowse link
G AC131806.3 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr19:21,675,357...21,675,977 JBrowse link
G Brix1 biogenesis of ribosomes BRX1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:59,450,608...59,461,486
Ensembl chr 2:59,450,614...59,461,495 		JBrowse link
G Cavin1 caveolae associated protein 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:85,884,100...85,896,136
Ensembl chr10:85,889,036...85,896,120 		JBrowse link
G Ddx21 DExD-box helicase 21 enables ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:25470060) 		UniProt
Ensembl
RGD		 PMID:25470060 GO_REF:0000024 GO_REF:0000107 NCBI chr20:30,534,319...30,554,513
Ensembl chr20:30,534,319...30,554,543 		JBrowse link
G Ddx28 DEAD-box helicase 28 enables ISO
IEA 		(PMID:25683715)
GO_REF:0000107 		RGD
Ensembl		 PMID:25683715 GO_REF:0000107 NCBI chr19:33,909,799...33,911,729
Ensembl chr19:33,909,801...33,911,742 		JBrowse link
G Emg1 EMG1 N1-specific pseudouridine methyltransferase enables IBA
IEA 		GO_REF:0000033
GO_REF:0000043 		GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000043 NCBI chr 4:157,509,258...157,517,540
Ensembl chr 4:157,509,277...157,517,540 		JBrowse link
G ENSRNOG00000062954 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr 5:139,288,466...139,289,219 JBrowse link
G ENSRNOG00000067114 enables IEA GO_REF:0000043
GO_REF:0000002 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 Ensembl chr14:56,566,496...56,566,753 JBrowse link
G ENSRNOG00000068299 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr11:43,521,883...43,522,773 JBrowse link
G ENSRNOG00000070004 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr  X:47,263,245...47,264,783 JBrowse link
G ENSRNOG00000070545 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr12:26,692,582...26,692,999 JBrowse link
G ENSRNOG00000071113 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr 7:89,437,557...89,446,328 JBrowse link
G Eral1 Era-like 12S mitochondrial rRNA chaperone 1 enables ISO
IEA
IBA
ISS 		(PMID:20604745)
GO_REF:0000043
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024 		RGD
UniProt
GO_Central
Ensembl		 PMID:20604745 GO_REF:0000024 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 NCBI chr10:63,459,774...63,466,829
Ensembl chr10:62,961,730...62,968,994 		JBrowse link
G Eri1 exoribonuclease 1 enables ISS
ISO 		GO_REF:0000024
(PMID:18438418) 		UniProt
RGD		 PMID:18438418 GO_REF:0000024 NCBI chr16:63,427,412...63,447,521
Ensembl chr16:56,724,115...56,744,226 		JBrowse link
G Fastkd2 FAST kinase domains 2 enables ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000043
(PMID:25683715) 		UniProt
RGD		 PMID:25683715 GO_REF:0000024 GO_REF:0000043 NCBI chr 9:65,166,148...65,188,184
Ensembl chr 9:65,168,228...65,188,174 		JBrowse link
G Fastkd5 FAST kinase domains 5 enables ISO (PMID:25683715) RGD PMID:25683715 NCBI chr 3:138,283,315...138,300,803
Ensembl chr 3:117,830,083...117,847,820 		JBrowse link
G Imp4 IMP U3 small nucleolar ribonucleoprotein 4 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:36,654,127...36,659,265
Ensembl chr 9:36,654,401...36,660,075 		JBrowse link
G LOC103690796 60S ribosomal protein L9-like enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:1,386,183...1,386,826
Ensembl chr  X:1,386,155...1,386,850 		JBrowse link
G LOC120097492 uncharacterized LOC120097492 enables IBA
IEA 		GO_REF:0000033
GO_REF:0000002
GO_REF:0000043 		GO_Central
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr16:58,159,832...58,164,364
Ensembl chr16:58,156,236...58,166,965 		JBrowse link
G LOC120097744 60S ribosomal protein L37-like enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:82,653,507...82,654,862
Ensembl chr 8:14,562,970...14,563,263 		JBrowse link
G LOC120103069 40S ribosomal protein S18-like enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:70,284,347...70,316,393 JBrowse link
G Mrpl16 mitochondrial ribosomal protein L16 enables IEA
IBA 		GO_REF:0000002
GO_REF:0000033 		InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 1:208,633,671...208,638,483
Ensembl chr 1:208,633,586...208,640,667 		JBrowse link
G Mrpl20 mitochondrial ribosomal protein L20 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:166,408,962...166,413,492
Ensembl chr 5:166,408,962...166,413,492 		JBrowse link
G Mrps27 mitochondrial ribosomal protein S27 enables ISO
IEA 		(PMID:22841715)
GO_REF:0000107 		RGD
Ensembl		 PMID:22841715 GO_REF:0000107 NCBI chr 2:30,740,007...30,808,577
Ensembl chr 2:30,740,033...30,808,577 		JBrowse link
G Mrps6 mitochondrial ribosomal protein S6 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:31,295,358...31,348,483
Ensembl chr11:31,295,614...31,348,484 		JBrowse link
G Mrps7 mitochondrial ribosomal protein S7 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:100,843,691...100,846,838
Ensembl chr10:100,843,356...100,847,129 		JBrowse link
G Mterf4 mitochondrial transcription termination factor 4 enables ISO
IEA 		(PMID:21531335)
GO_REF:0000107 		RGD
Ensembl		 PMID:21531335 GO_REF:0000107 NCBI chr 9:101,281,560...101,286,236
Ensembl chr 9:93,834,144...93,838,864 		JBrowse link
G Ngrn neugrin, neurite outgrowth associated enables ISO
ISS 		(PMID:27667664)
GO_REF:0000024 		RGD
UniProt		 PMID:27667664 GO_REF:0000024 NCBI chr 1:134,213,235...134,219,348
Ensembl chr 1:134,213,456...134,219,339 		JBrowse link
G Nol12 nucleolar protein 12 enables IDA
IEA
IBA 		PMID:16430885
GO_REF:0000043
GO_REF:0000033 		UniProt
GO_Central		 PMID:16430885 GO_REF:0000033 GO_REF:0000043, RGD:8553573 NCBI chr 7:112,373,749...112,379,362
Ensembl chr 7:110,493,246...110,498,907 		JBrowse link
G Npm1 nucleophosmin 1 enables ISO RNAcentral:URS00025C25E0_9606|RNAcentral:URS00025D0EC0_9606 (PMID:24106084)
(PMID:15596447), (PMID:18809582) 		RGD PMID:15596447 PMID:18809582 PMID:24106084 NCBI chr10:18,245,739...18,255,913
Ensembl chr10:17,739,941...17,751,645
Ensembl chr  X:17,739,941...17,751,645 		JBrowse link
G Ppan peter pan homolog enables IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 8:19,423,908...19,427,941
Ensembl chr 8:19,423,961...19,427,938 		JBrowse link
G Ptcd3 Pentatricopeptide repeat domain 3 enables ISO
IEA
IBA 		(PMID:19427859)
GO_REF:0000107
GO_REF:0000043
GO_REF:0000002
GO_REF:0000033 		RGD
Ensembl
UniProt
InterPro
GO_Central		 PMID:19427859 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 NCBI chr 4:105,480,699...105,508,007
Ensembl chr 4:103,920,566...103,957,538 		JBrowse link
G Rcc1l RCC1 like enables ISO
IBA 		(PMID:27667664)
GO_REF:0000033 		RGD
GO_Central		 PMID:27667664 GO_REF:0000033 NCBI chr12:22,543,125...22,574,042
Ensembl chr12:22,543,734...22,574,036 		JBrowse link
G Rnasel ribonuclease L IDA RGD PMID:8469023 RGD:2291995 NCBI chr13:68,446,641...68,460,804
Ensembl chr13:65,901,459...65,908,704 		JBrowse link
G Rpf1 ribosome production factor 1 enables IEA GO_REF:0000002
GO_REF:0000043 		InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr 2:235,403,020...235,417,546
Ensembl chr 2:235,403,021...235,417,807 		JBrowse link
G Rpf2 ribosome production factor 2 homolog enables IBA
IEA 		GO_REF:0000033
GO_REF:0000104
GO_REF:0000002 		GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 NCBI chr20:43,630,003...43,651,477
Ensembl chr20:43,629,951...43,651,509 		JBrowse link
G Rpf2l1 ribosome production factor 2 homolog like 1 enables IBA
IEA 		GO_REF:0000033
GO_REF:0000104
GO_REF:0000002 		GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 NCBI chr 6:134,287,529...134,288,901
Ensembl chr 6:134,287,818...134,288,702 		JBrowse link
G Rpl11 ribosomal protein L11 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:148,274,060...148,277,708
Ensembl chr 5:148,274,069...148,277,599 		JBrowse link
G Rpl23a ribosomal protein L23A enables IEA GO_REF:0000043
GO_REF:0000002 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr10:63,076,660...63,079,346
Ensembl chr10:63,076,066...63,079,346
Ensembl chr15:63,076,066...63,079,346 		JBrowse link
G Rpl23al1 ribosomal protein L23A like 1 enables IEA GO_REF:0000043
GO_REF:0000002 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 2:38,452,814...38,453,384
Ensembl chr 2:38,451,401...38,453,417 		JBrowse link
G Rpl23al6 ribosomal protein L23A like 6 enables IEA GO_REF:0000043
GO_REF:0000002 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 4:149,492,385...149,492,849
Ensembl chr 4:149,492,385...149,492,849 		JBrowse link
G Rpl23al9 ribosomal protein L23A like 9 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:63,894,996...63,895,471
Ensembl chr13:63,894,996...63,895,466 		JBrowse link
G Rpl37 ribosomal protein L37 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:54,215,469...54,217,429
Ensembl chr 2:54,215,469...54,217,442 		JBrowse link
G Rpl37-ps1 ribosomal protein L37, pseudogene 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:40,167,499...40,167,862
Ensembl chr17:40,167,530...40,167,823
Ensembl chr17:40,167,530...40,167,823 		JBrowse link
G Rpl37-ps4 ribosomal protein L37, pseudogene 4 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:60,209,056...60,209,726
Ensembl chr10:60,209,037...60,209,345 		JBrowse link
G Rpl37l1 ribosomal protein L37-like 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:61,033,799...61,034,157
Ensembl chr10:61,033,797...61,034,168
Ensembl chr 9:61,033,797...61,034,168 		JBrowse link
G Rpl37l2 ribosomal protein L37 like 2 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:103,269,803...103,270,169
Ensembl chr13:103,269,834...103,270,115 		JBrowse link
G Rpl37l3 ribosomal protein L37-like 3 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:34,705,658...34,705,976
Ensembl chr17:34,705,656...34,705,949 		JBrowse link
G Rpl37l4 ribosomal protein L37 like 4 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:32,091,137...32,091,463
Ensembl chr 8:14,562,970...14,563,263 		JBrowse link
G Rpl5 ribosomal protein L5 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:1,843,856...1,850,301
Ensembl chr14:1,843,770...1,850,290 		JBrowse link
G Rpl8 ribosomal protein L8 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:108,626,194...108,628,485
Ensembl chr 7:108,622,324...108,628,482
Ensembl chr 3:108,622,324...108,628,482 		JBrowse link
G Rpl9 ribosomal protein L9 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:42,893,945...42,897,140
Ensembl chr14:42,893,942...42,897,136
Ensembl chr 3:42,893,942...42,897,136
Ensembl chr 1:42,893,942...42,897,136 		JBrowse link
G Rpl9-ps20 ribosomal protein L9, pseudogene 20 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:13,751,294...13,753,402
Ensembl chr20:13,751,279...13,752,645
Ensembl chr20:13,751,279...13,752,645 		JBrowse link
G Rpl9l2 ribosomal protein L9 like 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:23,792,917...23,793,629
Ensembl chr 7:23,793,011...23,793,619 		JBrowse link
G Rps11 ribosomal protein S11 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:95,605,690...95,607,798
Ensembl chr 1:95,605,692...95,607,874 		JBrowse link
G Rps11-ps1 ribosomal protein S11, pseudogene 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:68,341,045...68,341,815
Ensembl chr14:68,341,045...68,341,521 		JBrowse link
G Rps11l1 ribosomal protein S11 like 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:78,367,597...78,368,077
Ensembl chr 4:78,367,597...78,368,073 		JBrowse link
G Rps18 ribosomal protein S18 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:4,931,427...4,935,538
Ensembl chr20:4,931,768...4,938,315 		JBrowse link
G Rps18l1 ribosomal protein S18-like 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:101,204,519...101,205,067
Ensembl chr10:101,204,500...101,205,146 		JBrowse link
G Rps18l2 ribosomal protein S18 like 2 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:13,107,145...13,107,646
Ensembl chr19:13,107,145...13,107,603 		JBrowse link
G Rps18l5 ribosomal protein S18-like 5 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:112,997,100...112,997,655
Ensembl chr 5:112,997,113...112,997,661 		JBrowse link
G Rps4x ribosomal protein S4, X-linked enables IEA GO_REF:0000104
GO_REF:0000043 		UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr  X:71,338,478...71,342,921
Ensembl chr  X:67,298,525...67,303,019
Ensembl chr 4:67,298,525...67,303,019 		JBrowse link
G Rps4x-ps13 ribosomal protein S4, X-linked, pseudogene 13 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:181,269,507...181,270,440
Ensembl chr 4:181,269,081...181,270,349 		JBrowse link
G Rps4x-ps9 ribosomal protein S4, X-linked, pseudogene 9 enables IEA GO_REF:0000104
GO_REF:0000043 		UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr 4:37,758,373...37,759,289
Ensembl chr 4:37,758,363...37,759,291 		JBrowse link
G Rps5 ribosomal protein S5 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:73,538,776...73,543,073
Ensembl chr 1:73,538,776...73,543,073 		JBrowse link
G Rps9 ribosomal protein S9 enables IEA
IBA 		GO_REF:0000043
GO_REF:0000002
GO_REF:0000033 		UniProt
InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr 1:65,511,723...65,515,076
Ensembl chr 1:65,511,723...65,515,123 		JBrowse link
G Rps9l1 ribosomal protein S9 like 1 enables IBA
IEA 		GO_REF:0000033
GO_REF:0000002
GO_REF:0000043 		GO_Central
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr  X:105,572,159...105,572,766
Ensembl chr  X:105,572,167...105,572,751 		JBrowse link
G Sbds Sbds, ribosome maturation factor enables ISO
IEA 		(PMID:17475909)
GO_REF:0000107 		RGD
Ensembl		 PMID:17475909 GO_REF:0000107 NCBI chr12:32,056,649...32,065,816
Ensembl chr12:26,420,414...26,429,649 		JBrowse link
G Taco1 translational activator of cytochrome c oxidase I enables IEA
ISO 		GO_REF:0000107
(PMID:27319982) 		Ensembl
RGD		 PMID:27319982 GO_REF:0000107 NCBI chr10:91,502,395...91,510,299
Ensembl chr10:91,002,640...91,012,042 		JBrowse link
G Utp25 UTP25 small subunit processome component enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:104,630,390...104,651,681
Ensembl chr13:104,630,391...104,651,662 		JBrowse link
5.8S rRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpl19 ribosomal protein L19 IDA RGD PMID:468846 RGD:11036085 NCBI chr10:83,022,503...83,026,030
Ensembl chr10:83,019,257...83,052,112 		JBrowse link
G Rpl6 ribosomal protein L6 IDA RGD PMID:468846 RGD:11036085 NCBI chr12:35,347,493...35,352,011
Ensembl chr12:35,347,497...35,351,921 		JBrowse link
G Rpl8 ribosomal protein L8 IDA RGD PMID:468846 RGD:11036085 NCBI chr 7:108,626,194...108,628,485
Ensembl chr 7:108,622,324...108,628,482
Ensembl chr 3:108,622,324...108,628,482 		JBrowse link
G Rps13 ribosomal protein S13 IDA RGD PMID:7251593 RGD:11040692 NCBI chr 1:170,572,925...170,575,355
Ensembl chr 1:170,572,921...170,575,355
Ensembl chr 3:170,572,921...170,575,355 		JBrowse link
G Rps9 ribosomal protein S9 IDA RGD PMID:7251593 RGD:11040692 NCBI chr 1:65,511,723...65,515,076
Ensembl chr 1:65,511,723...65,515,123 		JBrowse link
5S rRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eef2 eukaryotic translation elongation factor 2 IDA RGD PMID:3801485 RGD:10401646 NCBI chr 7:9,183,836...9,196,255
Ensembl chr 7:8,533,116...8,559,183 		JBrowse link
G ENSRNOG00000068299 enables IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 Ensembl chr11:43,521,883...43,522,773 JBrowse link
G ENSRNOG00000070004 enables IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 Ensembl chr  X:47,263,245...47,264,783 JBrowse link
G Gtf3a general transcription factor III A enables ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:24120868) 		UniProt
Ensembl
RGD		 PMID:24120868 GO_REF:0000024 GO_REF:0000107 NCBI chr12:8,136,746...8,144,690
Ensembl chr12:8,136,747...8,144,690 		JBrowse link
G Hmgb1 high mobility group box 1 IDA RGD PMID:18845125 RGD:2316767 NCBI chr12:11,009,236...11,015,941
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G Mdm2 MDM2 proto-oncogene enables ISO
IEA 		(PMID:24120868)
GO_REF:0000107 		RGD
Ensembl		 PMID:24120868 GO_REF:0000107 NCBI chr 7:55,176,558...55,201,757
Ensembl chr 7:53,290,664...53,314,915 		JBrowse link
G Mrpl18 mitochondrial ribosomal protein L18 enables ISO
IEA 		(PMID:21685364)
GO_REF:0000107 		RGD
Ensembl		 PMID:21685364 GO_REF:0000107 NCBI chr 1:47,837,169...47,841,987
Ensembl chr 1:47,836,561...47,841,987 		JBrowse link
G Nop53 NOP53 ribosome biogenesis factor enables ISO
IEA
IBA 		(PMID:24120868)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:24120868 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:85,757,271...85,765,089
Ensembl chr 1:76,629,069...76,636,902 		JBrowse link
G Rpf2 ribosome production factor 2 homolog enables ISO
IEA 		(PMID:24120868)
GO_REF:0000107 		RGD
Ensembl		 PMID:24120868 GO_REF:0000107 NCBI chr20:43,630,003...43,651,477
Ensembl chr20:43,629,951...43,651,509 		JBrowse link
G Rpl11 ribosomal protein L11 enables ISO
IEA 		(PMID:18560357)
GO_REF:0000107 		RGD
Ensembl		 PMID:18560357 GO_REF:0000107 NCBI chr 5:148,274,060...148,277,708
Ensembl chr 5:148,274,069...148,277,599 		JBrowse link
G Rpl3 ribosomal protein L3 IDA RGD PMID:3301408 RGD:11036099 NCBI chr 7:111,622,255...111,627,640
Ensembl chr 7:111,621,610...111,636,468 		JBrowse link
G Rpl4 ribosomal protein L4 IDA RGD PMID:3301408 RGD:11036099 NCBI chr 8:64,671,177...64,676,301
Ensembl chr 8:64,671,160...64,676,306 		JBrowse link
G Rpl5 ribosomal protein L5 enables IDA
IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000002
(PMID:18560357) 		GO_Central
InterPro
RGD		 PMID:18560357 PMID:6430881 GO_REF:0000002 GO_REF:0000033, RGD:11039444 NCBI chr14:1,843,856...1,850,301
Ensembl chr14:1,843,770...1,850,290 		JBrowse link
G Rpl5l1 ribosomal protein L5-like 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:113,949,013...113,949,987 JBrowse link
G Rpl7 ribosomal protein L7 IDA RGD PMID:3301408 RGD:11036099 NCBI chr 5:3,217,184...3,220,192 JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog enables ISS
ISO 		GO_REF:0000024
(PMID:24120868) 		UniProt
RGD		 PMID:24120868 GO_REF:0000024 NCBI chr 5:9,733,486...9,735,119
Ensembl chr 5:9,733,091...9,735,140 		JBrowse link
G Tst thiosulfate sulfurtransferase enables ISS
ISO 		GO_REF:0000024
(PMID:20663881), (PMID:21685364) 		UniProt
RGD		 PMID:20663881 PMID:21685364 GO_REF:0000024 NCBI chr 7:111,828,557...111,836,980
Ensembl chr 7:109,948,062...109,957,216 		JBrowse link
large ribosomal subunit rRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07060610.1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 4:84,151,737...84,152,477 JBrowse link
G ENSRNOG00000068086 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr14:15,216,737...15,217,233 JBrowse link
G ENSRNOG00000069932 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr10:64,954,365...64,956,050 JBrowse link
G LOC102555453 60S ribosomal protein L12-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:1,196,588...1,197,283
Ensembl chr  X:1,196,729...1,197,226 		JBrowse link
G LOC108350588 60S ribosomal protein L23-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:8,001,209...8,002,446
Ensembl chr 3:8,001,626...8,002,130 		JBrowse link
G Mrpl11 mitochondrial ribosomal protein L11 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:211,693,807...211,696,667
Ensembl chr 1:202,264,471...202,267,756 		JBrowse link
G Rpl12 ribosomal protein L12 enables IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:9013569 PMID:8530386 GO_REF:0000033, RGD:11035231, RGD:11035233 NCBI chr 3:16,264,269...16,266,645
Ensembl chr 3:16,264,251...16,266,642 		JBrowse link
G Rpl12-ps1 ribosomal protein L12, pseudogene 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:79,059,464...79,060,196
Ensembl chr 8:79,059,459...79,060,213 		JBrowse link
G Rpl12-ps2 ribosomal protein L12, pseudogene 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:141,784,371...141,785,085
Ensembl chr 2:141,784,503...141,785,000 		JBrowse link
G Rpl12l2 ribosomal protein L12 like 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:80,169,205...80,169,831
Ensembl chr11:80,169,205...80,169,807 		JBrowse link
G Rpl17 ribosomal protein L17 IDA RGD PMID:6759166 RGD:11038795 NCBI chr18:70,856,275...70,859,388
Ensembl chr18:68,581,098...68,584,253
Ensembl chr 3:68,581,098...68,584,253 		JBrowse link
G Rpl19 ribosomal protein L19 IDA RGD PMID:6759166 RGD:11038795 NCBI chr10:83,022,503...83,026,030
Ensembl chr10:83,019,257...83,052,112 		JBrowse link
G Rpl23 ribosomal protein L23 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:82,771,878...82,775,840
Ensembl chr10:82,771,538...82,775,870 		JBrowse link
G Rpl23a ribosomal protein L23A IDA RGD PMID:1894596 PMID:6759166 RGD:11036075, RGD:11038795 NCBI chr10:63,076,660...63,079,346
Ensembl chr10:63,076,066...63,079,346
Ensembl chr15:63,076,066...63,079,346 		JBrowse link
G Rpl37a ribosomal protein L37A IDA RGD PMID:6759166 RGD:11038795 NCBI chr 9:74,298,843...74,300,926
Ensembl chr 9:74,298,818...74,302,730 		JBrowse link
G Rplp0 ribosomal protein lateral stalk subunit P0 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:41,054,363...41,057,632
Ensembl chr12:41,054,179...41,057,632 		JBrowse link
G Rplp0l1 ribosomal protein lateral stalk subunit P0 like 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:191,921,503...191,922,661
Ensembl chr 2:191,921,574...191,922,646 		JBrowse link
mitochondrial ribosomal large subunit rRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpusd4 RNA pseudouridine synthase D4 enables ISO
IEA 		(PMID:28082677)
GO_REF:0000107 		RGD
Ensembl		 PMID:28082677 GO_REF:0000107 NCBI chr 8:33,617,384...33,626,873
Ensembl chr 8:33,617,379...33,626,873 		JBrowse link
rRNA primary transcript binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cavin1 caveolae associated protein 1 enables ISO
IEA
IBA
ISS 		(PMID:9582279)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:9582279 PMID:9582279 GO_REF:0000033 GO_REF:0000107, RGD:8554461 NCBI chr10:85,884,100...85,896,136
Ensembl chr10:85,889,036...85,896,120 		JBrowse link
G Imp4 IMP U3 small nucleolar ribonucleoprotein 4 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:36,654,127...36,659,265
Ensembl chr 9:36,654,401...36,660,075 		JBrowse link
G Lipe lipase E, hormone sensitive type enables ISS PMID:9582279 UniProt PMID:9582279 RGD:8554461 NCBI chr 1:90,093,433...90,112,117
Ensembl chr 1:80,965,627...80,984,310 		JBrowse link
G Ncl nucleolin IDA RGD PMID:3790520 RGD:9693697 NCBI chr 9:86,999,588...87,008,112
Ensembl chr 9:86,998,019...87,008,136 		JBrowse link
G Rpf1 ribosome production factor 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:235,403,020...235,417,546
Ensembl chr 2:235,403,021...235,417,807 		JBrowse link
small ribosomal subunit rRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cirbp cold inducible RNA binding protein enables ISO
ISS 		(PMID:11574538)
GO_REF:0000024 		RGD
UniProt		 PMID:11574538 GO_REF:0000024 NCBI chr 7:10,184,515...10,189,623
Ensembl chr 7:9,424,178...9,538,818 		JBrowse link
G Map3k20 mitogen-activated protein kinase kinase kinase 20 enables ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:32289254) 		UniProt
Ensembl
RGD		 PMID:32289254 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:77,538,146...77,697,540
Ensembl chr 3:57,130,551...57,289,626 		JBrowse link
G Mrps18a mitochondrial ribosomal protein S18A enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:14,853,322...14,869,819
Ensembl chr 9:14,853,291...14,869,835 		JBrowse link
G Mrps18c mitochondrial ribosomal protein S18C enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:8,812,301...8,818,538
Ensembl chr14:8,791,330...8,818,516 		JBrowse link
G Mrps6 mitochondrial ribosomal protein S6 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:31,295,358...31,348,483
Ensembl chr11:31,295,614...31,348,484 		JBrowse link
G Nsun4 NOP2/Sun RNA methyltransferase 4 enables ISO (PMID:24516400) RGD PMID:24516400 NCBI chr 5:129,511,224...129,532,498
Ensembl chr 5:129,512,307...129,532,423
Ensembl chr 5:129,512,307...129,532,423 		JBrowse link
G Rps13 ribosomal protein S13 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:170,572,925...170,575,355
Ensembl chr 1:170,572,921...170,575,355
Ensembl chr 3:170,572,921...170,575,355 		JBrowse link
G Rps13l1 ribosomal protein S13 like 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:56,457,121...56,457,669
Ensembl chr 5:56,457,124...56,457,669 		JBrowse link
G Rps3 ribosomal protein S3 enables ISO (PMID:18610840) RGD PMID:18610840 NCBI chr 1:163,190,476...163,195,885
Ensembl chr 1:153,777,472...153,783,680 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21054
    binding 18050
      nucleic acid binding 3928
        RNA binding 1645
          rRNA binding 114
            5.8S rRNA binding 5
            5S rRNA binding + 17
            large ribosomal subunit rRNA binding + 18
            rRNA modification guide activity + 0
            rRNA primary transcript binding 5
            small ribosomal subunit rRNA binding 9
paths to the root