ONTOLOGY REPORT - ANNOTATIONS
Term: stem cell population maintenance
Accession: GO:0019827
browse the term
Definition: The process by which an organism or tissue maintains a population of stem cells of a single type. This can be achieved by a number of mechanisms: stem cell asymmetric division maintains stem cell numbers; stem cell symmetric division increases them; maintenance of a stem cell niche maintains the conditions for commitment to the stem cell fate for some types of stem cell; stem cells may arise de novo from other cell types.
Synonyms: related_synonym: maintenance of pluripotency
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Apc
APC regulator of WNT signaling pathway
acts_upstream_of_or_within
ISO
MGI:1857966 (PMID:18725524)
RGD
PMID:18725524
NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696
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Arid1a
AT-rich interaction domain 1A
acts_upstream_of_or_within
ISO
MGI:3796520 (PMID:18448678)
RGD
PMID:18448678
NCBI chr 5:145,908,173...145,981,552
Ensembl chr 5:145,908,181...145,985,564
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Ascl2
achaete-scute family bHLH transcription factor 2
involved_in
ISO
(PMID:25620640)
RGD
PMID:25620640
NCBI chr 1:198,148,999...198,151,406
Ensembl chr 1:198,148,999...198,151,406
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Cdc73
cell division cycle 73
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:19345177) GO_REF:0000107
UniProt RGD Ensembl
PMID:19345177
GO_REF:0000024 GO_REF:0000107
NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656
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Ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component
involved_in
ISO
(PMID:19345177)
RGD
PMID:19345177
NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303
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Ddx6
DEAD-box helicase 6
acts_upstream_of_or_within
ISO
(PMID:25456498)
RGD
PMID:25456498
NCBI chr 8:44,931,127...44,967,773
Ensembl chr 8:44,931,974...44,964,405
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Dicer1
dicer 1 ribonuclease III
acts_upstream_of_or_within
ISO
MGI:2681012 (PMID:14528307)
RGD
PMID:14528307
NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
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Dis3l2
DIS3-like 3'-5' exoribonuclease 2
involved_in
ISO
(PMID:23594738)
RGD
PMID:23594738
NCBI chr 9:87,355,409...87,736,616
Ensembl chr 9:87,356,457...87,736,616
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Dppa2
developmental pluripotency-associated 2
acts_upstream_of_or_within
ISO
(PMID:19846433)
RGD
PMID:19846433
NCBI chr11:52,549,024...52,556,740
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Eif4e
eukaryotic translation initiation factor 4E
acts_upstream_of_or_within involved_in
ISO IEA
MGI:1921453 (PMID:25456498) GO_REF:0000107
RGD Ensembl
PMID:25456498
GO_REF:0000107
NCBI chr 2:227,066,519...227,099,261
Ensembl chr 2:227,066,673...227,098,683
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Eif4enif1
eukaryotic translation initiation factor 4E nuclear import factor 1
acts_upstream_of_or_within
ISO
MGI:95305 (PMID:25456498)
RGD
PMID:25456498
NCBI chr14:78,056,115...78,099,846
Ensembl chr14:78,056,297...78,098,793
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Eomes
eomesodermin
acts_upstream_of_or_within
ISO
(PMID:20176728)
RGD
PMID:20176728
NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316
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Esrrb
estrogen-related receptor beta
involved_in
ISO ISS
(PMID:25522312) (PMID:18957414), (PMID:23169531) GO_REF:0000024
RGD UniProt
PMID:18957414 PMID:23169531 PMID:25522312
GO_REF:0000024
NCBI chr 6:106,007,701...106,163,136
Ensembl chr 6:106,008,095...106,160,791
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Fgf4
fibroblast growth factor 4
acts_upstream_of_or_within
ISO
MGI:97359 (PMID:15328412)
RGD
PMID:15328412
NCBI chr 1:200,023,937...200,027,793
Ensembl chr 1:200,024,056...200,025,466
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Fgfr1
Fibroblast growth factor receptor 1
IMP
RGD
PMID:19505325
RGD:2325177
NCBI chr16:66,491,930...66,547,161
Ensembl chr16:66,494,042...66,547,350
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Fzd7
frizzled class receptor 7
involved_in
ISO
(PMID:18681827)
RGD
PMID:18681827
NCBI chr 9:60,931,433...60,934,252
Ensembl chr 9:60,930,875...60,935,781
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Gnl3
G protein nucleolar 3
involved_in
ISO
(PMID:25522312)
RGD
PMID:25522312
NCBI chr16:6,207,402...6,213,491
Ensembl chr16:6,207,402...6,213,392
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Hesx1
HESX homeobox 1
acts_upstream_of_or_within
ISO
(PMID:26188092)
RGD
PMID:26188092
NCBI chr16:2,191,852...2,193,957
Ensembl chr16:2,191,852...2,193,957
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Kdm4c
lysine demethylase 4C
acts_upstream_of_or_within
ISO
MGI:1919200 (PMID:17938240)
RGD
PMID:17938240
NCBI chr 5:88,100,710...88,306,821
Ensembl chr 5:88,100,733...88,306,818
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Klf4
KLF transcription factor 4
involved_in
ISO
(PMID:19816951)
RGD
PMID:19816951
NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602
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Leo1
LEO1 homolog, Paf1/RNA polymerase II complex component
involved_in
ISS ISO
GO_REF:0000024 (PMID:19345177)
UniProt RGD
PMID:19345177
GO_REF:0000024
NCBI chr 8:76,199,547...76,223,983
Ensembl chr 8:76,199,099...76,223,983
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Lin28a
lin-28 homolog A
involved_in
ISO
(PMID:19703396)
RGD
PMID:19703396
NCBI chr 5:146,227,119...146,244,122
Ensembl chr 5:146,227,119...146,244,122
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LOC120098145
homeobox protein ceh-37-like
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:68,199,616...68,204,251
Ensembl chr 1:68,202,754...68,204,452
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Lsm1
LSM1 homolog, mRNA degradation associated
acts_upstream_of_or_within
ISO
(PMID:25456498)
RGD
PMID:25456498
NCBI chr16:66,277,345...66,288,852
Ensembl chr16:66,277,345...66,288,852
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Mettl14
methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit
involved_in
ISO
(PMID:24394384)
RGD
PMID:24394384
NCBI chr 2:211,530,598...211,546,845
Ensembl chr 2:211,530,602...211,546,821
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Mettl3
methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit
involved_in
ISO
(PMID:24394384), (PMID:25456834), (PMID:25569111)
RGD
PMID:24394384 PMID:25456834 PMID:25569111
NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041
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Miat
myocardial infarction associated transcript
acts_upstream_of_or_within
ISO
(PMID:20026622)
RGD
PMID:20026622
NCBI chr12:44,414,620...44,429,852
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Mtf2
metal response element binding transcription factor 2
involved_in
ISO
(PMID:20144788)
RGD
PMID:20144788
NCBI chr14:1,639,256...1,683,513
Ensembl chr14:1,640,746...1,683,524
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Nanog
Nanog homeobox
involved_in acts_upstream_of_or_within
IEP IBA ISO
GO_REF:0000033 (PMID:15108323), (PMID:25825768) MGI:1924054 (PMID:17938240)
GO_Central RGD
PMID:15108323 PMID:17938240 PMID:25825768 PMID:20352099
GO_REF:0000033, RGD:9589811
NCBI chr 4:155,943,737...155,951,116
Ensembl chr 4:155,943,737...155,951,116
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Nfib
nuclear factor I/B
acts_upstream_of_or_within
ISO
MGI:5052268 (PMID:32393888)
RGD
PMID:32393888
NCBI chr 5:96,759,208...96,974,001
Ensembl chr 5:96,764,653...96,975,479
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Nfix
nuclear factor I X
acts_upstream_of_or_within
ISO
MGI:3802570 (PMID:32393888)
RGD
PMID:32393888
NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265
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Nodal
nodal growth differentiation factor
acts_upstream_of_or_within
ISO
MGI:95518 (PMID:15505202)
RGD
PMID:15505202
NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
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Obox2
oocyte specific homeobox 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:68,191,238...68,199,383
Ensembl chr 1:68,197,886...68,199,095
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Obox2l1
oocyte specific homeobox 2 like 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:68,182,725...68,184,559
Ensembl chr 1:68,183,045...68,184,743
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Obox2l2
oocyte specific homeobox 2 like 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:68,216,812...68,219,145
Ensembl chr 1:68,217,649...68,219,076
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Padi4
peptidyl arginine deiminase 4
involved_in
ISS ISO
GO_REF:0000024 (PMID:24463520)
UniProt RGD
PMID:24463520
GO_REF:0000024
NCBI chr 5:153,041,351...153,074,412
Ensembl chr 5:153,041,352...153,074,362
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Paf1
PAF1 homolog, Paf1/RNA polymerase II complex component
involved_in
ISO
(PMID:19345177)
RGD
PMID:19345177
NCBI chr 1:83,683,654...83,689,233
Ensembl chr 1:83,668,813...83,689,237
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Pelo
pelota mRNA surveillance and ribosome rescue factor
acts_upstream_of_or_within
ISO
MGI:2450933 (PMID:24835669)
RGD
PMID:24835669
NCBI chr 2:46,797,853...46,799,621
Ensembl chr 2:46,797,853...46,799,746
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Phf19
PHD finger protein 19
involved_in
ISO
(PMID:22438827)
RGD
PMID:22438827
NCBI chr 3:18,175,281...18,197,289
Ensembl chr 3:18,175,282...18,196,405
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Pou5f1
POU class 5 homeobox 1
involved_in
ISO
(PMID:23376973), (PMID:23798425)
RGD
PMID:23376973 PMID:23798425
NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
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Prdm14
PR/SET domain 14
acts_upstream_of_or_within
ISO
MGI:3805889 (PMID:24268575)
RGD
PMID:24268575
NCBI chr 5:6,082,163...6,092,712
Ensembl chr 5:6,082,442...6,092,712
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Prdm16
PR/SET domain 16
acts_upstream_of_or_within
ISO
MGI:2135565|MGI:5564782|MGI:95457 (PMID:24703692)
RGD
PMID:24703692
NCBI chr 5:164,879,864...165,203,986
Ensembl chr 5:164,880,587...165,203,601
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Rtf1
Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
involved_in
ISO
(PMID:19345177)
RGD
PMID:19345177
NCBI chr 3:106,659,363...106,718,956
Ensembl chr 3:106,659,308...106,718,970
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Setd1a
SET domain containing 1A, histone lysine methyltransferase
acts_upstream_of_or_within
ISO
MGI:5568941 (PMID:24550110)
RGD
PMID:24550110
NCBI chr 1:182,386,197...182,411,695
Ensembl chr 1:182,388,060...182,411,090
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Setd6
SET domain containing 6, protein lysine methyltransferase
involved_in
ISS ISO
GO_REF:0000024 (PMID:23324626)
UniProt RGD
PMID:23324626
GO_REF:0000024
NCBI chr19:9,343,309...9,350,477
Ensembl chr19:9,347,458...9,350,453
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Smarca4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
acts_upstream_of_or_within
ISO
(PMID:20176728)
RGD
PMID:20176728
NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
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Smc3
structural maintenance of chromosomes 3
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:20720539)
Ensembl RGD
PMID:20720539
GO_REF:0000107
NCBI chr 1:252,601,422...252,644,522
Ensembl chr 1:252,601,753...252,644,522
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Smc5
structural maintenance of chromosomes 5
acts_upstream_of_or_within
ISO
MGI:5882566 (PMID:26919979)
RGD
PMID:26919979
NCBI chr 1:220,769,366...220,839,138
Ensembl chr 1:220,769,366...220,839,096
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Sox2
SRY-box transcription factor 2
involved_in
ISO
(PMID:23169531)
RGD
PMID:23169531
NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338
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Stag2
STAG2 cohesin complex component
acts_upstream_of_or_within
ISO
(PMID:20720539)
RGD
PMID:20720539
NCBI chr X:120,974,687...121,105,677
Ensembl chr X:120,974,857...121,105,677
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Tbx3
T-box transcription factor 3
acts_upstream_of_or_within
ISO
MGI:3769504 (PMID:18356246)
RGD
PMID:18356246
NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708
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Tcf15
transcription factor 15
involved_in
ISO
(PMID:32669716)
RGD
PMID:32669716
NCBI chr 3:140,638,984...140,644,766
Ensembl chr 3:140,638,984...140,644,766
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Tet1
tet methylcytosine dioxygenase 1
involved_in
ISO
(PMID:19372391)
RGD
PMID:19372391
NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052
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Tfap2c
transcription factor AP-2 gamma
acts_upstream_of_or_within
ISO
(PMID:20176728)
RGD
PMID:20176728
NCBI chr 3:161,315,114...161,322,998
Ensembl chr 3:161,315,031...161,322,995
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Tpt1
tumor protein, translationally-controlled 1
involved_in
ISO
(PMID:21076177)
RGD
PMID:21076177
NCBI chr15:51,156,728...51,159,629
Ensembl chr15:51,146,154...51,159,625
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Trim8
tripartite motif-containing 8
acts_upstream_of_or_within
ISO
(PMID:21689689)
RGD
PMID:21689689
NCBI chr 1:245,369,632...245,384,513
Ensembl chr 1:245,369,632...245,384,513
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Tut4
terminal uridylyl transferase 4
involved_in
ISO
(PMID:19703396)
RGD
PMID:19703396
NCBI chr 5:123,201,723...123,306,582
Ensembl chr 5:123,203,003...123,306,465
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Zic3
Zic family member 3
involved_in
ISO
(PMID:17267691)
RGD
PMID:17267691
NCBI chr X:136,123,662...136,129,627
Ensembl chr X:136,124,026...136,134,746
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Crebbp
CREB binding protein
acts_upstream_of_or_within
ISO
MGI:2177588|MGI:3618462 (PMID:17936260)
RGD
PMID:17936260
NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888
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Nanos2
nanos C2HC-type zinc finger 2
involved_in
ISO
(PMID:18281459), (PMID:19745153)
RGD
PMID:18281459 PMID:19745153
NCBI chr 1:78,635,668...78,637,128
Ensembl chr 1:78,635,668...78,637,128
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Piwil2
piwi-like RNA-mediated gene silencing 2
involved_in
ISO
(PMID:19114715)
RGD
PMID:19114715
NCBI chr15:45,431,402...45,498,034
Ensembl chr15:45,431,703...45,497,702
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Pou5f1
POU class 5 homeobox 1
acts_upstream_of_or_within
ISO
MGI:2177588|MGI:3578312 (PMID:15486564)
RGD
PMID:15486564
NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
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Prdm14
PR/SET domain 14
acts_upstream_of_or_within
ISO
MGI:4441771 (PMID:23670199)
RGD
PMID:23670199
NCBI chr 5:6,082,163...6,092,712
Ensembl chr 5:6,082,442...6,092,712
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Tfap2c
transcription factor AP-2 gamma
acts_upstream_of_or_within
ISO
MGI:2176695 (PMID:19776388)
RGD
PMID:19776388
NCBI chr 3:161,315,114...161,322,998
Ensembl chr 3:161,315,031...161,322,995
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Zic3
Zic family member 3
involved_in
ISO
(PMID:32868762)
RGD
PMID:32868762
NCBI chr X:136,123,662...136,129,627
Ensembl chr X:136,124,026...136,134,746
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Jmjd1c
jumonji domain containing 1C
acts_upstream_of_or_within
ISO
MGI:5544070 (PMID:24006281)
RGD
PMID:24006281
NCBI chr20:21,332,147...21,494,220
Ensembl chr20:21,332,147...21,463,122
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Tuba3b
tubulin, alpha 3B
acts_upstream_of_or_within
ISO
MGI:1095406 (PMID:34326397)
RGD
PMID:34326397
NCBI chr 4:178,588,779...178,594,328
Ensembl chr 4:178,588,779...178,594,326
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Sall1
spalt-like transcription factor 1
acts_upstream_of_or_within
ISO
MGI:3603818 (PMID:24550112)
RGD
PMID:24550112
NCBI chr19:18,005,782...18,022,705
Ensembl chr19:18,007,503...18,022,705
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Six2
SIX homeobox 2
involved_in
ISO
(PMID:18682239), (PMID:21350016), (PMID:22902740), (PMID:24598167)
RGD
PMID:18682239 PMID:21350016 PMID:22902740 PMID:24598167
NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193
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Wnt9b
Wnt family member 9B
acts_upstream_of_or_within
ISO
MGI:3526437 (PMID:21350016)
RGD
PMID:21350016
NCBI chr10:88,635,330...88,657,035
Ensembl chr10:88,635,331...88,657,035
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Hnf1b
HNF1 homeobox B
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857856 (PMID:20040500)
Ensembl RGD
PMID:20040500
GO_REF:0000107
NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888
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Pax2
paired box 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:17314325)
UniProt RGD
PMID:17314325
GO_REF:0000024
NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
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Pax8
paired box 8
involved_in
ISS ISO
GO_REF:0000024 (PMID:17314325)
UniProt RGD
PMID:17314325
GO_REF:0000024
NCBI chr 3:7,185,721...7,242,363
Ensembl chr 3:7,185,723...7,242,363
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Bmp7
bone morphogenetic protein 7
acts_upstream_of_or_within
ISO
MGI:1857654 (PMID:9056639)
RGD
PMID:9056639
NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
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Mir145
microRNA 145
involved_in
ISO
(PMID:19409607)
RGD
PMID:19409607
NCBI chr18:55,099,640...55,099,727
Ensembl chr18:55,099,640...55,099,727
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Loxl2
lysyl oxidase-like 2
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:25959397) GO_REF:0000024
Ensembl RGD UniProt
PMID:25959397
GO_REF:0000024 GO_REF:0000107
NCBI chr15:44,683,449...44,773,067
Ensembl chr15:44,683,880...44,773,067
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Wnt9b
Wnt family member 9B
involved_in
ISO
(PMID:25640183)
RGD
PMID:25640183
NCBI chr10:88,635,330...88,657,035
Ensembl chr10:88,635,331...88,657,035
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Zfp706
zinc finger protein 706
involved_in
ISO
(PMID:24412312)
RGD
PMID:24412312
NCBI chr 7:68,167,496...68,174,121
Ensembl chr 7:68,166,323...68,174,148
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Aspm
assembly factor for spindle microtubules
acts_upstream_of_or_within
ISO
(PMID:19896444)
RGD
PMID:19896444
NCBI chr13:51,074,849...51,123,755
Ensembl chr13:51,074,849...51,123,755
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Cdh2
cadherin 2
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:24952463) GO_REF:0000024
Ensembl RGD UniProt
PMID:24952463
GO_REF:0000024 GO_REF:0000107
NCBI chr18:7,776,704...7,990,934
Ensembl chr18:7,776,704...7,990,167
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Dll1
delta like canonical Notch ligand 1
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:23695674) GO_REF:0000024 (PMID:19682396)
Ensembl RGD UniProt
PMID:19682396 PMID:23695674
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179
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Fancc
FA complementation group C
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1890081 (PMID:24483844)
Ensembl RGD
PMID:24483844
GO_REF:0000107
NCBI chr17:1,680,660...1,822,610
Ensembl chr17:1,681,324...1,829,376
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Fancd2
FA complementation group D2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1890081 (PMID:24483844)
Ensembl RGD
PMID:24483844
GO_REF:0000107
NCBI chr 4:146,679,014...146,743,422
Ensembl chr 4:146,679,179...146,743,412
G
Foxo1
forkhead box O1
acts_upstream_of_or_within
ISO
MGI:1890081 (PMID:19896444)
RGD
PMID:19896444
NCBI chr 2:136,312,168...136,390,603
Ensembl chr 2:136,312,168...136,387,790
G
Foxo3
forkhead box O3
acts_upstream_of_or_within
ISO
MGI:1890077|MGI:2448480|MGI:95480 (PMID:19896444), (PMID:24483844)
RGD
PMID:19896444 PMID:24483844
NCBI chr20:45,669,708...45,764,606
Ensembl chr20:45,672,995...45,764,561
G
Fut10
fucosyltransferase 10
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:23986452)
Ensembl RGD
PMID:23986452
GO_REF:0000107
NCBI chr16:60,868,761...60,958,762
Ensembl chr16:60,877,952...60,958,683
G
Hes1
hes family bHLH transcription factor 1
involved_in
IEA ISO IDA
GO_REF:0000107 (PMID:11399758) (PMID:19682396)
Ensembl RGD
PMID:11399758 PMID:19682396 PMID:11399758
GO_REF:0000107, RGD:8554692
NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
G
Hes5
hes family bHLH transcription factor 5
involved_in
ISO IDA
(PMID:19682396) (PMID:11399758)
RGD
PMID:11399758 PMID:19682396 PMID:11399758
RGD:8554692
NCBI chr 5:165,522,138...165,523,684
Ensembl chr 5:165,522,234...165,523,001
G
Hook3
hook microtubule-tethering protein 3
acts_upstream_of_or_within
ISO
(PMID:20152126)
RGD
PMID:20152126
NCBI chr16:65,954,293...66,058,812
Ensembl chr16:65,954,350...66,061,338
G
Igf2bp1
insulin-like growth factor 2 mRNA binding protein 1
acts_upstream_of_or_within
ISO
MGI:3043746 (PMID:24192035)
RGD
PMID:24192035
NCBI chr10:80,908,300...80,951,097
Ensembl chr10:80,908,076...80,951,129
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Jag1
jagged canonical Notch ligand 1
involved_in
ISO IEA
(PMID:19682396) GO_REF:0000107
RGD Ensembl
PMID:19682396
GO_REF:0000107
NCBI chr 3:124,406,783...124,442,220
Ensembl chr 3:124,406,794...124,442,209
G
Mapk8
mitogen-activated protein kinase 8
acts_upstream_of_or_within
IGI IMP
PMID:24388750
MGI
PMID:24388750 PMID:24388750
RGD:10047173 , RGD:10047173
NCBI chr16:8,638,897...8,721,960
Ensembl chr16:8,638,924...8,721,981
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Mcph1
microcephalin 1
acts_upstream_of_or_within
ISO
MGI:5308745 (PMID:21947081)
RGD
PMID:21947081
NCBI chr16:71,021,855...71,224,067
Ensembl chr16:71,024,588...71,224,122
G
Mmp24
matrix metallopeptidase 24
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:24952463) GO_REF:0000107
UniProt RGD Ensembl
PMID:24952463
GO_REF:0000024 GO_REF:0000107
NCBI chr 3:144,279,096...144,323,572
Ensembl chr 3:144,279,096...144,323,572
G
Notch1
notch receptor 1
involved_in
ISO
(PMID:19682396)
RGD
PMID:19682396
NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
G
Pcm1
pericentriolar material 1
acts_upstream_of_or_within
ISO
(PMID:20152126)
RGD
PMID:20152126
NCBI chr16:51,008,315...51,105,261
Ensembl chr16:51,008,315...51,105,091
G
Prox1
prospero homeobox 1
involved_in
ISO
(PMID:20808958)
RGD
PMID:20808958
NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
G
Prrx1
paired related homeobox 1
acts_upstream_of_or_within
ISO
(PMID:23447615)
RGD
PMID:23447615
NCBI chr13:75,600,777...75,671,896
Ensembl chr13:75,601,706...75,670,866
G
Rest
RE1-silencing transcription factor
involved_in
ISS ISO
GO_REF:0000024 (PMID:27819263)
UniProt RGD
PMID:27819263
GO_REF:0000024
NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354
G
Sct
secretin
acts_upstream_of_or_within
ISO
MGI:3815315 (PMID:21159798)
RGD
PMID:21159798
NCBI chr 1:196,382,857...196,383,668
Ensembl chr 1:196,382,856...196,383,658
G
Sox2
SRY-box transcription factor 2
involved_in
ISO
(PMID:22198669)
RGD
PMID:22198669
NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338
G
Srrt
serrate, RNA effector molecule
involved_in
ISO
(PMID:22198669)
RGD
PMID:22198669
NCBI chr12:19,392,578...19,406,098
Ensembl chr12:19,392,625...19,406,095
G
Ss18
SS18 subunit of BAF chromatin remodeling complex
acts_upstream_of_or_within
ISO
(PMID:23785148)
RGD
PMID:23785148
NCBI chr18:5,773,042...5,835,696
Ensembl chr18:5,773,042...5,835,333
G
Wdr47
WD repeat domain 47
acts_upstream_of_or_within
ISO
MGI:6102912 (PMID:29078390)
RGD
PMID:29078390
NCBI chr 2:196,226,757...196,287,739
Ensembl chr 2:196,205,238...196,287,739
G
Yme1l1
YME1-like 1 ATPase
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:35172139) GO_REF:0000107
UniProt RGD Ensembl
PMID:35172139
GO_REF:0000024 GO_REF:0000107
NCBI chr17:85,287,607...85,326,068
Ensembl chr17:85,287,554...85,326,335
G
Lbh
LBH regulator of WNT signaling pathway
involved_in
ISO
(PMID:25655704)
RGD
PMID:25655704
NCBI chr 6:22,569,238...22,593,056
Ensembl chr 6:22,568,834...22,593,079
G
Tp63
tumor protein p63
involved_in
ISO
(PMID:25655704)
RGD
PMID:25655704
NCBI chr11:74,838,858...75,049,764
Ensembl chr11:74,838,859...75,049,398
G
Esrrb
estrogen-related receptor beta
involved_in
ISS ISO
GO_REF:0000024 (PMID:23019124), (PMID:23040477), (PMID:23040478), (PMID:26206133)
UniProt RGD
PMID:23019124 PMID:23040477 PMID:23040478 PMID:26206133
GO_REF:0000024
NCBI chr 6:106,007,701...106,163,136
Ensembl chr 6:106,008,095...106,160,791
G
Kdm2b
lysine demethylase 2B
acts_upstream_of_or_within
ISO
(PMID:21540074)
RGD
PMID:21540074
NCBI chr12:33,566,530...33,701,366
Ensembl chr12:33,574,657...33,701,355
G
Ncoa3
nuclear receptor coactivator 3
involved_in
ISS ISO
GO_REF:0000024 (PMID:23019124)
UniProt RGD
PMID:23019124
GO_REF:0000024
NCBI chr 3:154,738,566...154,821,395
Ensembl chr 3:154,738,581...154,818,594
G
Prdm14
PR/SET domain 14
involved_in
ISO
(PMID:26523391), (PMID:27281218)
RGD
PMID:26523391 PMID:27281218
NCBI chr 5:6,082,163...6,092,712
Ensembl chr 5:6,082,442...6,092,712
G
Rest
RE1-silencing transcription factor
involved_in
ISO IEA ISS
(PMID:21258371) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:21258371
GO_REF:0000024 GO_REF:0000107
NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354
G
Sirt6
sirtuin 6
involved_in
ISO
(PMID:27912097)
RGD
PMID:27912097
NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
G
Tead1
TEA domain transcription factor 1
acts_upstream_of_or_within
ISO
MGI:106907|MGI:109241 (PMID:20516196)
RGD
PMID:20516196
NCBI chr 1:166,791,900...167,010,591
Ensembl chr 1:166,792,628...167,003,369
G
Tead3
TEA domain transcription factor 3
acts_upstream_of_or_within
ISO
MGI:101876|MGI:106907 (PMID:20516196)
RGD
PMID:20516196
NCBI chr20:6,392,053...6,411,446
Ensembl chr20:6,392,053...6,411,446
G
Tead4
TEA domain transcription factor 4
acts_upstream_of_or_within
ISO
MGI:101876|MGI:109241 (PMID:20516196)
RGD
PMID:20516196
NCBI chr 4:161,474,122...161,572,837
Ensembl chr 4:161,497,851...161,572,323
G
Yap1
Yes1 associated transcriptional regulator
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:20516196)
Ensembl RGD
PMID:20516196
GO_REF:0000107
NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010
G
Zfp322a
zinc finger protein 322a
involved_in
ISO
(PMID:24550733)
RGD
PMID:24550733
NCBI chr17:41,773,789...41,789,654
Ensembl chr17:41,773,782...41,790,078
G
Myc
MYC proto-oncogene, bHLH transcription factor
involved_in
ISS ISO
GO_REF:0000024 (PMID:31005419)
UniProt RGD
PMID:31005419
GO_REF:0000024
NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
G
Smo
smoothened, frizzled class receptor
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1934268|MGI:2445832 (PMID:17199044)
Ensembl RGD
PMID:17199044
GO_REF:0000107
NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829
G
Taf5l1
TATA-box binding protein associated factor 5 like 1
involved_in
ISO
(PMID:31005419)
RGD
PMID:31005419
NCBI chr19:51,991,704...52,011,001
Ensembl chr19:51,991,708...52,011,295
G
Taf6l
TATA-box binding protein associated factor 6 like
involved_in
ISO
(PMID:31005419)
RGD
PMID:31005419
NCBI chr 1:205,672,147...205,684,721
Ensembl chr 1:205,672,149...205,684,655
G
Tal1
TAL bHLH transcription factor 1, erythroid differentiation factor
acts_upstream_of_or_within
ISO
MGI:1858004 (PMID:19850742)
RGD
PMID:19850742
NCBI chr 5:128,586,776...128,600,976
Ensembl chr 5:128,587,701...128,600,976
G
Tcf7l1
transcription factor 7 like 1
acts_upstream_of_or_within
ISO
(PMID:18467660)
RGD
PMID:18467660
NCBI chr 4:104,680,734...104,846,086
Ensembl chr 4:104,680,739...104,845,287
G
Cnot1
CCR4-NOT transcription complex, subunit 1
involved_in
ISO
(PMID:22367759)
RGD
PMID:22367759
NCBI chr19:9,255,190...9,346,574
Ensembl chr19:9,255,194...9,346,574
G
Cnot2
CCR4-NOT transcription complex, subunit 2
involved_in
ISO IBA
(PMID:22367759) GO_REF:0000033
RGD GO_Central
PMID:22367759
GO_REF:0000033
NCBI chr 7:52,130,445...52,222,338
Ensembl chr 7:52,130,441...52,223,575
G
Cnot3
CCR4-NOT transcription complex, subunit 3
involved_in
ISO IBA
(PMID:22367759) GO_REF:0000033
RGD GO_Central
PMID:22367759
GO_REF:0000033
NCBI chr 1:65,555,924...65,572,167
Ensembl chr 1:65,555,924...65,572,167
G
Elavl1
ELAV like RNA binding protein 1
involved_in
ISO
(PMID:24394384)
RGD
PMID:24394384
NCBI chr12:2,640,936...2,684,787
Ensembl chr12:2,645,061...2,684,784
G
Hmga2
high mobility group AT-hook 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:17624332)
UniProt RGD
PMID:17624332
GO_REF:0000024
NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784
G
Kat2a
lysine acetyltransferase 2A
involved_in
ISO
(PMID:30270482)
RGD
PMID:30270482
NCBI chr10:85,632,216...85,640,561
Ensembl chr10:85,632,216...85,640,166
G
Kdm3a
lysine demethylase 3A
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1097166 (PMID:17938240)
Ensembl RGD
PMID:17938240
GO_REF:0000107
NCBI chr 4:103,630,907...103,675,073
Ensembl chr 4:103,630,908...103,675,073
G
Ncoa3
nuclear receptor coactivator 3
acts_upstream_of_or_within
ISO
(PMID:22977234)
RGD
PMID:22977234
NCBI chr 3:154,738,566...154,821,395
Ensembl chr 3:154,738,581...154,818,594
G
Ptn
pleiotrophin
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:21791434) GO_REF:0000107
UniProt RGD Ensembl
PMID:21791434
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456
G
Sav1
salvador family WW domain containing protein 1
acts_upstream_of_or_within
ISO
MGI:3790763 (PMID:18369314)
RGD
PMID:18369314
NCBI chr 6:88,478,536...88,500,121
Ensembl chr 6:88,478,539...88,499,968
G
Tcf7l1
transcription factor 7 like 1
acts_upstream_of_or_within
ISO
(PMID:18347094)
RGD
PMID:18347094
NCBI chr 4:104,680,734...104,846,086
Ensembl chr 4:104,680,739...104,845,287
G
Tcl1a
Tcl1 family Akt coactivator A
acts_upstream_of_or_within
ISO
MGI:2446210 (PMID:17938240)
RGD
PMID:17938240
NCBI chr 6:124,125,032...124,131,025
Ensembl chr 6:124,125,032...124,131,025
G
Wdr43
WD repeat domain 43
involved_in
ISO
(PMID:31128943)
RGD
PMID:31128943
NCBI chr 6:23,845,499...23,884,846
Ensembl chr 6:23,845,499...23,884,846
G
Zc3h13
zinc finger CCCH type containing 13
involved_in
ISO
(PMID:29547716)
RGD
PMID:29547716
NCBI chr15:50,607,335...50,671,802
Ensembl chr15:50,607,380...50,671,802
G
Apc
APC regulator of WNT signaling pathway
acts_upstream_of_or_within
ISO
MGI:104642|MGI:1856318|MGI:1857966 (PMID:1541640), (PMID:18725524)
RGD
PMID:1541640 PMID:18725524
NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696
G
Ascl2
achaete-scute family bHLH transcription factor 2
acts_upstream_of_or_within
ISO
MGI:3846671 (PMID:19269367)
RGD
PMID:19269367
NCBI chr 1:198,148,999...198,151,406
Ensembl chr 1:198,148,999...198,151,406
G
Bcl9
BCL9, transcription coactivator
acts_upstream_of_or_within
ISO
MGI:1933114 (PMID:20682801)
RGD
PMID:20682801
NCBI chr 2:184,760,616...184,846,261
Ensembl chr 2:184,760,618...184,786,435
G
Bcl9l
BCL9 like
acts_upstream_of_or_within
ISO
MGI:1924828 (PMID:20682801)
RGD
PMID:20682801
NCBI chr 8:44,811,977...44,840,611
Ensembl chr 8:44,811,977...44,840,611
G
Bmpr1a
bone morphogenetic protein receptor type 1A
acts_upstream_of_or_within
ISO
MGI:2158342 (PMID:17699604)
RGD
PMID:17699604
NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
G
Braf
B-Raf proto-oncogene, serine/threonine kinase
acts_upstream_of_or_within
ISO
MGI:97847 (PMID:23022482)
RGD
PMID:23022482
NCBI chr 4:68,375,484...68,510,652
Ensembl chr 4:68,384,649...68,510,463
G
Cdkn2a
cyclin-dependent kinase inhibitor 2A
acts_upstream_of_or_within
ISO
MGI:101761 (PMID:18957199)
RGD
PMID:18957199
NCBI chr 5:103,984,949...103,992,143
Ensembl chr 5:103,984,949...104,003,149
G
Cdx2
caudal type homeo box 2
acts_upstream_of_or_within
ISO
MGI:1857928 (PMID:16325584), (PMID:20404091)
RGD
PMID:16325584 PMID:20404091
NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142
G
Cul4a
cullin 4A
acts_upstream_of_or_within
ISO
MGI:2183544 (PMID:17616641)
RGD
PMID:17616641
NCBI chr16:76,385,298...76,422,316
Ensembl chr16:76,384,546...76,422,330
G
Elf5
E74 like ETS transcription factor 5
acts_upstream_of_or_within
ISO
(PMID:24859262)
RGD
PMID:24859262
NCBI chr 3:89,808,837...89,836,977
Ensembl chr 3:89,797,880...89,836,973
G
Esrrb
estrogen-related receptor beta
acts_upstream_of_or_within
ISO
(PMID:16518401), (PMID:16767105), (PMID:20720539)
RGD
PMID:16518401 PMID:16767105 PMID:20720539
NCBI chr 6:106,007,701...106,163,136
Ensembl chr 6:106,008,095...106,160,791
G
Fgf10
fibroblast growth factor 10
acts_upstream_of_or_within
ISO
MGI:1859647 (PMID:11880361)
RGD
PMID:11880361
NCBI chr 2:50,801,171...50,878,218
Ensembl chr 2:50,800,992...50,876,866
G
Fgf4
fibroblast growth factor 4
acts_upstream_of_or_within
ISO
MGI:97359 (PMID:15328412)
RGD
PMID:15328412
NCBI chr 1:200,023,937...200,027,793
Ensembl chr 1:200,024,056...200,025,466
G
Fgfr3
fibroblast growth factor receptor 3
acts_upstream_of_or_within
ISO
MGI:1931521 (PMID:19407216)
RGD
PMID:19407216
NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341
G
Gata2
GATA binding protein 2
acts_upstream_of_or_within
ISO
(PMID:16082385)
RGD
PMID:16082385
NCBI chr 4:120,654,205...120,667,763
Ensembl chr 4:120,658,986...120,667,761
G
Hes1
hes family bHLH transcription factor 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2149672 (PMID:10615124)
Ensembl RGD
PMID:10615124
GO_REF:0000107
NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
G
Hmga2
high mobility group AT-hook 2
acts_upstream_of_or_within
ISO
MGI:104738|MGI:2386412 (PMID:18957199)
RGD
PMID:18957199
NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784
G
Kat6a
lysine acetyltransferase 6A
acts_upstream_of_or_within
ISO
MGI:3626344 (PMID:16651658), (PMID:16702405)
RGD
PMID:16651658 PMID:16702405
NCBI chr16:69,084,914...69,165,923
Ensembl chr16:69,084,914...69,163,606
G
Kit
KIT proto-oncogene receptor tyrosine kinase
IMP
neural stem cells from the ciliary epithelium of the eye
RGD
PMID:15302600
RGD:2292509
NCBI chr14:32,547,459...32,624,694
Ensembl chr14:32,548,877...32,624,652
G
Klf10
KLF transcription factor 10
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:19379700)
Ensembl RGD
PMID:19379700
GO_REF:0000107
NCBI chr 7:69,467,658...69,473,726
Ensembl chr 7:69,465,619...69,473,994
G
Klf4
KLF transcription factor 4
acts_upstream_of_or_within
ISO
(PMID:15358627)
RGD
PMID:15358627
NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602
G
Ldb1
LIM domain binding 1
acts_upstream_of_or_within
ISO
MGI:109360 (PMID:17991461)
RGD
PMID:17991461
NCBI chr 1:244,864,168...244,890,007
Ensembl chr 1:244,877,173...244,890,013
G
Ldb2
LIM domain binding 2
acts_upstream_of_or_within
ISO
MGI:894762 (PMID:17991461)
RGD
PMID:17991461
NCBI chr14:66,277,044...66,598,071
Ensembl chr14:66,277,085...66,597,778
G
Lif
LIF, interleukin 6 family cytokine
acts_upstream_of_or_within involved_in
ISO IEA
MGI:1201791|MGI:1342287 (PMID:15358627) GO_REF:0000107
RGD Ensembl
PMID:15358627
GO_REF:0000107
NCBI chr14:79,131,049...79,140,486
Ensembl chr14:79,134,574...79,140,482
G
Lig4
DNA ligase 4
acts_upstream_of_or_within
ISO
MGI:3714783 (PMID:17554302)
RGD
PMID:17554302
NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
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Lrp5
LDL receptor related protein 5
acts_upstream_of_or_within
ISO
MGI:3663738 (PMID:19672307)
RGD
PMID:19672307
NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581
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Med10
mediator complex subunit 10
acts_upstream_of_or_within
ISO
(PMID:20720539)
RGD
PMID:20720539
NCBI chr 1:33,470,064...33,481,698
Ensembl chr 1:33,470,066...33,475,767
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Med12
mediator complex subunit 12
acts_upstream_of_or_within
ISO
(PMID:20720539)
RGD
PMID:20720539
NCBI chr X:66,404,807...66,427,775
Ensembl chr X:66,404,760...66,428,387
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Med14
mediator complex subunit 14
acts_upstream_of_or_within
ISO
(PMID:20720539)
RGD
PMID:20720539
NCBI chr X:10,036,749...10,127,910
Ensembl chr X:10,036,805...10,126,240
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Med15
mediator complex subunit 15
acts_upstream_of_or_within
ISO
(PMID:20720539)
RGD
PMID:20720539
NCBI chr11:83,280,722...83,356,006
Ensembl chr11:83,280,762...83,355,362
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Med17
mediator complex subunit 17
acts_upstream_of_or_within
ISO
(PMID:20720539)
RGD
PMID:20720539
NCBI chr 8:12,101,594...12,120,592
Ensembl chr 8:12,101,594...12,120,592
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Med21
mediator complex subunit 21
acts_upstream_of_or_within
ISO
(PMID:20720539)
RGD
PMID:20720539
NCBI chr 4:179,560,509...179,583,811
Ensembl chr 4:179,560,579...179,567,548
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Med24
mediator complex subunit 24
acts_upstream_of_or_within
ISO
(PMID:20720539)
RGD
PMID:20720539
NCBI chr10:83,664,609...83,702,315
Ensembl chr10:83,664,609...83,690,123
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Med27
mediator complex subunit 27
acts_upstream_of_or_within
ISO
(PMID:20720539)
RGD
PMID:20720539
NCBI chr 3:12,629,593...12,803,340
Ensembl chr 3:12,629,603...12,803,339
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Med28
mediator complex subunit 28
acts_upstream_of_or_within
ISO
(PMID:20720539)
RGD
PMID:20720539
NCBI chr14:65,594,785...65,603,583
Ensembl chr14:65,594,647...65,603,583
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Med30
mediator complex subunit 30
acts_upstream_of_or_within
ISO
(PMID:20720539)
RGD
PMID:20720539
NCBI chr 7:84,004,735...84,026,474
Ensembl chr 7:84,004,722...84,026,595
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Med6
mediator complex subunit 6
acts_upstream_of_or_within
ISO
(PMID:20720539)
RGD
PMID:20720539
NCBI chr 6:101,270,410...101,283,929
Ensembl chr 6:101,270,410...101,283,876
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Med7
mediator complex subunit 7
acts_upstream_of_or_within
ISO
(PMID:20720539)
RGD
PMID:20720539
NCBI chr10:30,842,330...30,857,873
Ensembl chr10:30,842,292...30,859,220
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Nanog
Nanog homeobox
involved_in acts_upstream_of_or_within
ISO
(PMID:18388306) MGI:2664492 (PMID:12787504), (PMID:16767105), (PMID:16801560), (PMID:20720539)
RGD
PMID:12787504 PMID:16767105 PMID:16801560 PMID:18388306 PMID:20720539
NCBI chr 4:155,943,737...155,951,116
Ensembl chr 4:155,943,737...155,951,116
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Nipbl
NIPBL, cohesin loading factor
acts_upstream_of_or_within
ISO
(PMID:20720539)
RGD
PMID:20720539
NCBI chr 2:57,399,443...57,586,770
Ensembl chr 2:57,399,445...57,565,899
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Nkap
NFKB activating protein
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3765313|MGI:4839023 (PMID:20610818)
Ensembl RGD
PMID:20610818
GO_REF:0000107
NCBI chr X:116,373,031...116,392,677
Ensembl chr X:116,372,839...116,394,945
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Nodal
nodal growth differentiation factor
acts_upstream_of_or_within
ISO
MGI:2180793|MGI:95518 (PMID:15505202), (PMID:16678814)
RGD
PMID:15505202 PMID:16678814
NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
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Nog
noggin
involved_in
ISO IEA
(PMID:17889703) GO_REF:0000107
RGD Ensembl
PMID:17889703
GO_REF:0000107
NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
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Nr2e1
nuclear receptor subfamily 2, group E, member 1
acts_upstream_of_or_within
ISO
MGI:2151350|MGI:2176560|MGI:3764730|MGI:3807544 (PMID:12527005), (PMID:14702088), (PMID:18794344)
RGD
PMID:12527005 PMID:14702088 PMID:18794344
NCBI chr20:46,050,134...46,071,257
Ensembl chr20:46,050,414...46,073,949
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Pla2g2a
phospholipase A2 group IIA
acts_upstream_of_or_within
ISO
MGI:88039 (PMID:1541640)
RGD
PMID:1541640
NCBI chr 5:151,076,442...151,079,019
Ensembl chr 5:151,076,442...151,079,014
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Pou5f1
POU class 5 homeobox 1
involved_in acts_upstream_of_or_within
ISO
(PMID:19736317) MGI:1933381 (PMID:14502573), (PMID:16767105), (PMID:20720539), (PMID:9814708) (PMID:18388306), (PMID:19409607)
RGD
PMID:9814708 PMID:14502573 PMID:16767105 PMID:18388306 PMID:19409607 PMID:19736317 PMID:20720539 More...
NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
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Prdm16
PR/SET domain 16
acts_upstream_of_or_within
ISO
(PMID:19379700)
RGD
PMID:19379700
NCBI chr 5:164,879,864...165,203,986
Ensembl chr 5:164,880,587...165,203,601
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Raf1
Raf-1 proto-oncogene, serine/threonine kinase
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:88190 (PMID:23022482)
Ensembl RGD
PMID:23022482
GO_REF:0000107
NCBI chr 4:148,679,534...148,740,265
Ensembl chr 4:148,679,530...148,740,317
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Rbpj
recombination signal binding protein for immunoglobulin kappa J region
acts_upstream_of_or_within
ISO
MGI:3583755 (PMID:21402740)
RGD
PMID:21402740
NCBI chr14:57,338,493...57,523,330
Ensembl chr14:57,338,507...57,523,353
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Rest
RE1-silencing transcription factor
involved_in
ISS ISO
GO_REF:0000024 (PMID:27819263)
UniProt RGD
PMID:27819263
GO_REF:0000024
NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354
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Rif1
replication timing regulatory factor 1
acts_upstream_of_or_within
ISO
(PMID:16518401)
RGD
PMID:16518401
NCBI chr 3:36,554,689...36,607,961
Ensembl chr 3:36,554,697...36,603,617
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Sall4
spalt-like transcription factor 4
acts_upstream_of_or_within
ISO
(PMID:20720539)
RGD
PMID:20720539
NCBI chr 3:157,474,067...157,491,055
Ensembl chr 3:157,474,642...157,490,822
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Sfrp1
secreted frizzled-related protein 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3621116 (PMID:19664990)
Ensembl RGD
PMID:19664990
GO_REF:0000107
NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286
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Ski
Ski proto-oncogene
acts_upstream_of_or_within
ISO
(PMID:19379700)
RGD
PMID:19379700
NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733
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Smc1a
structural maintenance of chromosomes 1A
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:20720539)
Ensembl RGD
PMID:20720539
GO_REF:0000107
NCBI chr X:21,103,323...21,148,053
Ensembl chr X:21,103,282...21,148,056
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Sox2
SRY-box transcription factor 2
involved_in acts_upstream_of_or_within
ISO
(PMID:18388306), (PMID:19409607), (PMID:19736317) (PMID:16767105), (PMID:20720539)
RGD
PMID:16767105 PMID:18388306 PMID:19409607 PMID:19736317 PMID:20720539
NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338
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Sox4
SRY-box transcription factor 4
acts_upstream_of_or_within
ISO
(PMID:19379700)
RGD
PMID:19379700
NCBI chr17:35,667,809...35,672,515
Ensembl chr17:35,667,537...35,673,665
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Sox9
SRY-box transcription factor 9
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:2176173|MGI:2429649 (PMID:20871603)
UniProt RGD
PMID:20871603
GO_REF:0000024
NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
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Spi1
Spi-1 proto-oncogene
acts_upstream_of_or_within
ISO
(PMID:19379700)
RGD
PMID:19379700
NCBI chr 3:77,059,744...77,093,730
Ensembl chr 3:77,073,012...77,092,393
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Stat3
signal transducer and activator of transcription 3
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:20720539)
Ensembl RGD
PMID:20720539
GO_REF:0000107
NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057
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Tbx1
T-box transcription factor 1
involved_in
ISO
(PMID:22495305)
RGD
PMID:22495305
NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
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Tcf7l1
transcription factor 7 like 1
acts_upstream_of_or_within
ISO
MGI:1202879 (PMID:19718027)
RGD
PMID:19718027
NCBI chr 4:104,680,734...104,846,086
Ensembl chr 4:104,680,739...104,845,287
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Tcf7l2
transcription factor 7 like 2
acts_upstream_of_or_within
ISO
MGI:1202876|MGI:1926344 (PMID:10027409), (PMID:19251639), (PMID:19718027), (PMID:9697701)
RGD
PMID:9697701 PMID:10027409 PMID:19251639 PMID:19718027
NCBI chr 1:254,785,956...254,978,967
Ensembl chr 1:254,786,091...254,978,967
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Tcl1a
Tcl1 family Akt coactivator A
acts_upstream_of_or_within
ISO
(PMID:16767105)
RGD
PMID:16767105
NCBI chr 6:124,125,032...124,131,025
Ensembl chr 6:124,125,032...124,131,025
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Tfap2c
transcription factor AP-2 gamma
acts_upstream_of_or_within
ISO
MGI:3040993 (PMID:20404091)
RGD
PMID:20404091
NCBI chr 3:161,315,114...161,322,998
Ensembl chr 3:161,315,031...161,322,995
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Vangl2
VANGL planar cell polarity protein 2
acts_upstream_of_or_within
ISO
(PMID:19497282)
RGD
PMID:19497282
NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378
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Vps72
vacuolar protein sorting 72 homolog
acts_upstream_of_or_within
ISO
(PMID:19379700)
RGD
PMID:19379700
NCBI chr 2:182,678,594...182,690,185
Ensembl chr 2:182,678,609...182,690,182
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Wnt7a
Wnt family member 7A
acts_upstream_of_or_within
ISO
MGI:1857704 (PMID:19497282)
RGD
PMID:19497282
NCBI chr 4:123,863,108...123,908,981
Ensembl chr 4:123,863,108...123,908,981
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Yap1
Yes1 associated transcriptional regulator
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:17980593)
Ensembl RGD
PMID:17980593
GO_REF:0000107
NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010
G
Zfp36l2
zinc finger protein 36, C3H type-like 2
involved_in
ISO
(PMID:23748442)
RGD
PMID:23748442
NCBI chr 6:10,490,032...10,494,073
Ensembl chr 6:10,490,032...10,494,064
G
Zhx2
zinc fingers and homeoboxes 2
acts_upstream_of_or_within
ISO
(PMID:19515908)
RGD
PMID:19515908
NCBI chr 7:89,226,358...89,374,266
Ensembl chr 7:89,226,463...89,374,378
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