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ONTOLOGY REPORT - ANNOTATIONS

Term:pentose metabolic process
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Accession:GO:0019321 term browser browse the term
Definition:The chemical reactions and pathways involving a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.
Synonyms:exact_synonym: pentose metabolism


show annotations for term's descendants           Sort by:
pentose metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fggy FGGY carbohydrate kinase domain containing involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:115,514,573...115,901,713
Ensembl chr 5:110,398,863...110,786,017 		JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within ISO (PMID:31296900) RGD PMID:31296900 NCBI chr 1:86,607,769...86,615,045
Ensembl chr 1:77,476,084...77,486,992 		JBrowse link
D-ribose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt5 nudix hydrolase 5 involved_in ISO
ISS		 (PMID:21389046)
GO_REF:0000024		 RGD
UniProt		 PMID:21389046 GO_REF:0000024 NCBI chr17:77,345,041...77,368,308
Ensembl chr17:72,435,697...72,459,001 		JBrowse link
G Rbks ribokinase involved_in IEA GO_REF:0000041
GO_REF:0000104		 UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr 6:30,467,724...30,544,284
Ensembl chr 6:24,747,293...24,824,290 		JBrowse link
D-ribose metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rbks ribokinase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:30,467,724...30,544,284
Ensembl chr 6:24,747,293...24,824,290 		JBrowse link
G Rpia ribose 5-phosphate isomerase A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:104,282,081...104,307,732
Ensembl chr 4:102,723,712...102,749,355 		JBrowse link
D-xylose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhdh dihydrodiol dehydrogenase involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:6753830)		 GO_Central
Ensembl
RGD		 PMID:6753830 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:105,088,108...105,102,560
Ensembl chr 1:95,953,092...95,965,197 		JBrowse link
D-xylose metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcxr dicarbonyl and L-xylulose reductase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:106,504,730...106,506,619 JBrowse link
G Uxs1 UDP-glucuronate decarboxylase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:740,929...818,310
Ensembl chr 9:653,659...756,334 		JBrowse link
G Xylb xylulokinase involved_in IEA GO_REF:0000043
GO_REF:0000002
GO_REF:0000104		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 NCBI chr 8:119,093,466...119,128,858
Ensembl chr 8:119,096,029...119,128,848 		JBrowse link
L-arabinose metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otog otogelin involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:105,882,747...105,951,825
Ensembl chr 1:96,746,336...96,815,415 		JBrowse link
G Otogl otogelin-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:44,952,633...45,097,869
Ensembl chr 7:43,067,644...43,223,592 		JBrowse link
pentose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G G6pd glucose-6-phosphate dehydrogenase involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:5643703)
MGI:2182739 (PMID:14757696), (PMID:15998684), (PMID:1953691), (PMID:7439685), (PMID:8491670), (PMID:9330624), (PMID:9539108), (PMID:9627357)
GO_REF:0000107		 RGD
Ensembl		 PMID:1953691 PMID:5643703 PMID:7439685 PMID:8491670 PMID:9330624 More... GO_REF:0000107 NCBI chr  X:157,352,364...157,372,144
Ensembl chr  X:152,201,098...152,220,801 		JBrowse link
G Pgd phosphogluconate dehydrogenase acts_upstream_of_or_within ISO
IEA		 (PMID:8491670)
GO_REF:0000107		 RGD
Ensembl		 PMID:8491670 GO_REF:0000107 NCBI chr 5:164,865,830...164,882,029
Ensembl chr 5:159,561,271...159,742,778 		JBrowse link
xylulose metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbr2 carbonyl reductase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:106,508,964...106,511,614
Ensembl chr10:105,991,589...106,013,001 		JBrowse link
G Cbr2l1 carbonyl reductase 2 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:106,033,250...106,036,852
Ensembl chr10:106,033,255...106,036,919 		JBrowse link
G Dcxr dicarbonyl and L-xylulose reductase involved_in
acts_upstream_of_or_within		 ISO
IEA
IBA
IDA		 (PMID:11882650)
GO_REF:0000117
GO_REF:0000033		 RGD
UniProt
GO_Central		 PMID:11882650 PMID:11882650 GO_REF:0000033 GO_REF:0000117, RGD:632676 NCBI chr10:106,504,730...106,506,619 JBrowse link
G Xylb xylulokinase involved_in IEA
IBA
ISS
ISO		 GO_REF:0000104
GO_REF:0000033
GO_REF:0000024
(PMID:23179721)		 UniProt
GO_Central
RGD		 PMID:23179721 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 NCBI chr 8:119,093,466...119,128,858
Ensembl chr 8:119,096,029...119,128,848 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      metabolic process 12180
        small molecule metabolic process 1928
          monosaccharide metabolic process 301
            pentose metabolic process 15
              D-ribose metabolic process + 3
              D-xylose metabolic process + 4
              L-lyxose metabolic process 0
              arabinose metabolic process + 2
              pentose biosynthetic process + 2
              pentose catabolic process + 3
              xylulose metabolic process + 4
Path 2
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      metabolic process 12180
        primary metabolic process 10745
          carbohydrate metabolic process 651
            monosaccharide metabolic process 301
              pentose metabolic process 15
                D-ribose metabolic process + 3
                D-xylose metabolic process + 4
                L-lyxose metabolic process 0
                arabinose metabolic process + 2
                pentose biosynthetic process + 2
                pentose catabolic process + 3
                xylulose metabolic process + 4
paths to the root