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ONTOLOGY REPORT - ANNOTATIONS

Term:viral genome replication
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Accession:GO:0019079 term browser browse the term
Definition:Any process involved directly in viral genome replication, including viral nucleotide metabolism.
Synonyms:narrow_synonym: sigma virus replication
 broad_synonym: viral replication


show annotations for term's descendants           Sort by:
viral genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gas6 growth arrest specific 6 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21501828)		 UniProt
Ensembl
RGD		 PMID:21501828 GO_REF:0000024 GO_REF:0000107 NCBI chr16:82,747,676...82,778,090
Ensembl chr16:76,045,426...76,075,904 		JBrowse link
G Grk2 G protein-coupled receptor kinase 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:23029581)		 Ensembl
RGD		 PMID:23029581 GO_REF:0000107 NCBI chr 1:211,010,259...211,031,013
Ensembl chr 1:201,581,480...201,601,582 		JBrowse link
G Kpna6 karyopherin subunit alpha 6 acts_upstream_of_or_within ISO
IEA		 MGI:3856636 (PMID:28189564)
GO_REF:0000107		 RGD
Ensembl		 PMID:28189564 GO_REF:0000107 NCBI chr 5:147,272,466...147,307,523
Ensembl chr 5:141,991,568...142,021,120 		JBrowse link
G Slc38a8 solute carrier family 38, member 8 acts_upstream_of_or_within ISO
IEA		 (PMID:36735752)
GO_REF:0000107		 RGD
Ensembl		 PMID:36735752 GO_REF:0000107 NCBI chr19:64,432,524...64,468,852
Ensembl chr19:47,525,301...47,554,726 		JBrowse link
G Vcp valosin-containing protein involved_in ISO
IEA		 (PMID:22379090)
GO_REF:0000107		 RGD
Ensembl		 PMID:22379090 GO_REF:0000107 NCBI chr 5:62,005,984...62,025,387
Ensembl chr 5:57,210,168...57,229,571 		JBrowse link
modulation by host of viral genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ifi27 interferon, alpha-inducible protein 27 involved_in ISO (PMID:27777077) RGD PMID:27777077 NCBI chr 6:128,355,312...128,361,783
Ensembl chr 6:122,590,472...122,779,294 		JBrowse link
modulation by host of viral RNA genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx56 DEAD-box helicase 56 acts_upstream_of_negative_effect ISO
IEA		 (PMID:33109765)
GO_REF:0000107		 RGD
Ensembl		 PMID:33109765 GO_REF:0000107 NCBI chr14:85,325,942...85,336,262
Ensembl chr14:81,112,012...81,122,333 		JBrowse link
G Fbxl2 F-box and leucine-rich repeat protein 2 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:122,794,870...122,843,265
Ensembl chr 8:113,913,373...113,965,066 		JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 involved_in ISO
IEA		 (PMID:24514761)
GO_REF:0000107		 RGD
Ensembl		 PMID:24514761 GO_REF:0000107 NCBI chr  X:152,284,857...152,322,686
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
G Phb1 prohibitin 1 involved_in ISO
IEA		 (PMID:29324904)
GO_REF:0000107		 RGD
Ensembl		 PMID:29324904 GO_REF:0000107 NCBI chr10:81,102,043...81,114,815
Ensembl chr10:80,605,251...80,618,042 		JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in ISO (PMID:25106914) RGD PMID:25106914 NCBI chr 3:166,179,742...166,214,448
Ensembl chr 3:145,761,558...145,794,386 		JBrowse link
G Tmem41b transmembrane protein 41B involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:173,447,362...173,461,760
Ensembl chr 1:164,012,592...164,026,933 		JBrowse link
G Vapb VAMP associated protein B and C involved_in ISO (PMID:19515777) RGD PMID:19515777 NCBI chr 3:182,954,247...182,997,018
Ensembl chr 3:162,535,905...162,573,763 		JBrowse link
negative regulation by host of viral genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 involved_in ISO (PMID:18827027) RGD PMID:18827027 NCBI chr 7:113,314,196...113,333,306
Ensembl chr 7:111,433,764...111,452,922 		JBrowse link
G Ccl12 C-C motif chemokine ligand 12 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr10:67,567,876...67,569,426
Ensembl chr10:67,070,230...67,071,780 		JBrowse link
G Ccnk cyclin K involved_in ISO
IEA		 (PMID:21555514)
GO_REF:0000107		 RGD
Ensembl		 PMID:21555514 GO_REF:0000107 NCBI chr 6:132,854,428...132,877,604
Ensembl chr 6:127,090,569...127,113,191 		JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked involved_in ISO (PMID:24380861) RGD PMID:24380861 NCBI chr  X:12,152,346...12,165,983
Ensembl chr  X:9,479,532...9,493,168 		JBrowse link
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 involved_in ISS
ISO		 GO_REF:0000024
(PMID:16601681)		 UniProt
RGD		 PMID:16601681 GO_REF:0000024 NCBI chr 3:125,810,207...125,895,574
Ensembl chr 3:105,356,261...105,441,630 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO
IEA		 (PMID:25244949)
GO_REF:0000107		 RGD
Ensembl		 PMID:25244949 GO_REF:0000107 NCBI chr 1:51,236,410...52,430,242
Ensembl chr 1:48,690,556...49,882,555 		JBrowse link
G Smc5 structural maintenance of chromosomes 5 involved_in ISO (PMID:28095508) RGD PMID:28095508 NCBI chr 1:230,195,894...230,265,677
Ensembl chr 1:220,769,366...220,839,096 		JBrowse link
G Smc6 structural maintenance of chromosomes 6 involved_in ISO
IEA		 (PMID:28095508)
GO_REF:0000107		 RGD
Ensembl		 PMID:28095508 GO_REF:0000107 NCBI chr 6:39,697,810...39,752,275
Ensembl chr 6:33,978,716...34,031,746 		JBrowse link
G Vapa VAMP associated protein A involved_in ISO (PMID:19515777) RGD PMID:19515777 NCBI chr 9:112,624,791...112,654,731
Ensembl chr 9:105,177,907...105,207,847 		JBrowse link
G Vapb VAMP associated protein B and C involved_in ISO (PMID:19515777) RGD PMID:19515777 NCBI chr 3:182,954,247...182,997,018
Ensembl chr 3:162,535,905...162,573,763 		JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISO
IEA		 (PMID:23355615)
GO_REF:0000107		 RGD
Ensembl		 PMID:23355615 GO_REF:0000107 NCBI chr 5:142,661,193...142,670,051
Ensembl chr 5:137,376,564...137,385,351 		JBrowse link
negative regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:157,446,120...157,455,958
Ensembl chr 4:155,774,132...155,783,972 		JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 involved_in IBA
ISO		 GO_REF:0000033
(PMID:18779051), (PMID:21835787), (PMID:29290613)		 GO_Central
RGD		 PMID:18779051 PMID:21835787 PMID:29290613 GO_REF:0000033 NCBI chr 7:113,314,196...113,333,306
Ensembl chr 7:111,433,764...111,452,922 		JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO
IEA
ISS		 (PMID:17005673)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:17005673 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:57,762,710...57,884,555
Ensembl chr 7:55,880,112...55,994,784 		JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K involved_in ISO
IEA		 (PMID:18774950)
GO_REF:0000107		 RGD
Ensembl		 PMID:18774950 GO_REF:0000107 NCBI chr10:60,974,183...60,995,047
Ensembl chr10:60,475,897...60,496,773 		JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 involved_in ISO (PMID:20164836) RGD PMID:20164836 NCBI chr 2:185,587,722...185,619,084
Ensembl chr 2:182,898,738...182,930,506 		JBrowse link
G Trim28 tripartite motif-containing 28 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2143362 (PMID:19270682)
GO_REF:0000107
(PMID:20164836)		 RGD
Ensembl		 PMID:19270682 PMID:20164836 GO_REF:0000107 NCBI chr 1:82,724,842...82,731,566
Ensembl chr 1:73,652,709...73,659,380 		JBrowse link
negative regulation of viral genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 involved_in ISO (PMID:16378963) RGD PMID:16378963 NCBI chr 7:113,314,196...113,333,306
Ensembl chr 7:111,433,764...111,452,922 		JBrowse link
G Banf1 barrier to autointegration nuclear assembly factor 1 involved_in ISO
IEA		 (PMID:18005698)
GO_REF:0000107		 RGD
Ensembl		 PMID:18005698 GO_REF:0000107 NCBI chr 1:212,101,523...212,103,568
Ensembl chr 1:202,671,305...202,674,188 		JBrowse link
G Bst2 bone marrow stromal cell antigen 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:21919738), (PMID:22284121)
(PMID:20943977)		 UniProt
RGD		 PMID:20943977 PMID:21919738 PMID:22284121 GO_REF:0000024 NCBI chr16:18,250,593...18,254,967
Ensembl chr16:18,217,407...18,220,979 		JBrowse link
G Ccl5 C-C motif chemokine ligand 5 involved_in ISO (PMID:10490959) RGD PMID:10490959 NCBI chr10:68,820,330...68,824,906
Ensembl chr10:68,322,829...68,327,377 		JBrowse link
G Eif2ak2 eukaryotic translation initiation factor 2-alpha kinase 2 involved_in ISO
ISS
IEA		 (PMID:19189853), (PMID:19840259)
GO_REF:0000024
GO_REF:0000107
(PMID:20038207)		 RGD
UniProt
Ensembl		 PMID:19189853 PMID:19840259 PMID:20038207 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:21,941,147...21,977,115
Ensembl chr 6:16,188,979...16,224,971 		JBrowse link
G ENSRNOG00000068074 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 4:59,549,152...59,549,829 JBrowse link
G ENSRNOG00000070481 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 4:30,960,845...30,961,834 JBrowse link
G Fam111a FAM111 trypsin like peptidase A involved_in ISO (PMID:23093934) RGD PMID:23093934 NCBI chr 1:219,065,542...219,081,213
Ensembl chr 1:209,640,953...209,656,547 		JBrowse link
G Ifih1 interferon induced with helicase C domain 1 involved_in ISO
IEA		 (PMID:33727702)
GO_REF:0000107		 RGD
Ensembl		 PMID:33727702 GO_REF:0000107 NCBI chr 3:67,635,924...67,683,968
Ensembl chr 3:47,227,364...47,275,456 		JBrowse link
G Ifitm1 interferon induced transmembrane protein 1 involved_in ISO
IBA		 (PMID:21253575), (PMID:21976647)
GO_REF:0000033		 RGD
GO_Central		 PMID:21253575 PMID:21976647 GO_REF:0000033 NCBI chr 1:205,496,757...205,498,796
Ensembl chr 1:196,067,963...196,069,169 		JBrowse link
G Ifitm2 interferon induced transmembrane protein 2 involved_in ISO
IBA		 (PMID:21253575)
GO_REF:0000033		 RGD
GO_Central		 PMID:21253575 GO_REF:0000033 NCBI chr 1:205,481,168...205,482,348
Ensembl chr 1:196,051,537...196,052,741 		JBrowse link
G Ifitm2-ps2 interferon induced transmembrane protein 2, pseudogene 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:70,737,384...70,738,072
Ensembl chr13:68,187,366...68,187,854 		JBrowse link
G Ifitm3 interferon induced transmembrane protein 3 involved_in ISO
IBA		 (PMID:20943977), (PMID:21253575)
GO_REF:0000033		 RGD
GO_Central		 PMID:20943977 PMID:21253575 GO_REF:0000033 NCBI chr 1:205,540,649...205,541,758
Ensembl chr 1:196,111,043...196,112,203 		JBrowse link
G Ifitm3-ps1 interferon induced transmembrane protein 3, pseudogene 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:65,445,869...65,446,288
Ensembl chr14:61,233,269...61,233,688 		JBrowse link
G Ifitm3-ps2 interferon induced transmembrane protein 3, pseudogene 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:46,606,814...46,607,230
Ensembl chr11:33,137,146...33,138,061 		JBrowse link
G Ifitm6 interferon induced transmembrane protein 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:205,546,648...205,547,920
Ensembl chr 1:196,117,049...196,118,386 		JBrowse link
G Ifnb1 interferon beta 1 involved_in ISO (PMID:19008854) RGD PMID:19008854 NCBI chr 5:108,066,650...108,067,487
Ensembl chr 5:103,020,969...103,021,523 		JBrowse link
G Ilf3 interleukin enhancer binding factor 3 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:21123651)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:21123651 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:28,198,454...28,236,634
Ensembl chr 8:19,922,460...19,960,350 		JBrowse link
G Isg15 ISG15 ubiquitin-like modifier involved_in ISO
IEA		 (PMID:19357168), (PMID:33727702)
GO_REF:0000107		 RGD
Ensembl		 PMID:19357168 PMID:33727702 GO_REF:0000107 NCBI chr 5:172,066,369...172,067,656
Ensembl chr 5:166,784,148...166,785,435 		JBrowse link
G Isg20 interferon stimulated exonuclease gene 20 involved_in ISO
IEA
IBA		 (PMID:21036379)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:21036379 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:142,234,729...142,246,403
Ensembl chr 1:132,815,123...132,837,027 		JBrowse link
G Ltf lactotransferrin involved_in ISO (PMID:25193851) RGD PMID:25193851 NCBI chr 8:119,878,344...119,901,189
Ensembl chr 8:110,999,948...111,022,795 		JBrowse link
G Mavs mitochondrial antiviral signaling protein involved_in ISO (PMID:20451243) RGD PMID:20451243 NCBI chr 3:138,904,673...138,919,129
Ensembl chr 3:118,451,743...118,466,094 		JBrowse link
G Mx1 MX dynamin like GTPase 1 involved_in ISO (PMID:14687945), (PMID:15047845), (PMID:16202617) RGD PMID:14687945 PMID:15047845 PMID:16202617 NCBI chr11:50,269,056...50,294,699
Ensembl chr11:36,799,660...36,823,507 		JBrowse link
G Mx2 MX dynamin like GTPase 2 involved_in ISO (PMID:24500530) RGD PMID:24500530 NCBI chr11:50,375,101...50,399,373
Ensembl chr11:36,906,111...36,930,342 		JBrowse link
G N4bp1 Nedd4 binding protein 1 involved_in ISO
IEA		 (PMID:31133753)
GO_REF:0000107		 RGD
Ensembl		 PMID:31133753 GO_REF:0000107 NCBI chr19:36,396,082...36,446,835
Ensembl chr19:20,222,776...20,273,570 		JBrowse link
G Oas1a 2'-5' oligoadenylate synthetase 1A involved_in ISO
IBA		 (PMID:18931074)
GO_REF:0000033
(PMID:23196181)		 RGD
GO_Central		 PMID:18931074 PMID:23196181 GO_REF:0000033 NCBI chr12:41,330,423...41,341,130
Ensembl chr12:35,669,801...35,680,517 		JBrowse link
G Oas1b 2-5 oligoadenylate synthetase 1B involved_in ISS
IBA		 GO_REF:0000024
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 NCBI chr12:41,385,184...41,395,891
Ensembl chr12:35,724,055...35,735,242 		JBrowse link
G Oas1d 2'-5' oligoadenylate synthetase 1D involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:41,309,214...41,318,823
Ensembl chr12:35,648,583...35,657,902 		JBrowse link
G Oas1e 2'-5' oligoadenylate synthetase 1E involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:41,410,954...41,419,924
Ensembl chr12:35,750,359...35,759,301 		JBrowse link
G Oas1h 2 ' -5 ' oligoadenylate synthetase 1H involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:41,343,449...41,356,400
Ensembl chr12:35,683,699...35,693,366 		JBrowse link
G Oas1i 2 ' -5 ' oligoadenylate synthetase 1I involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:41,285,201...41,297,242
Ensembl chr12:35,624,592...35,636,604 		JBrowse link
G Oas2 2'-5' oligoadenylate synthetase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:41,464,568...41,492,036
Ensembl chr12:35,806,759...35,829,371 		JBrowse link
G Oas3 2'-5'-oligoadenylate synthetase 3 involved_in IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
(PMID:19056102), (PMID:23196181)		 Ensembl
GO_Central
RGD		 PMID:19056102 PMID:23196181 GO_REF:0000033 GO_REF:0000107 NCBI chr12:41,439,645...41,463,392
Ensembl chr12:35,779,022...35,802,781 		JBrowse link
G Oasl 2'-5'-oligoadenylate synthetase-like involved_in ISO
IBA		 (PMID:18931074), (PMID:20074559)
GO_REF:0000033		 RGD
GO_Central		 PMID:18931074 PMID:20074559 GO_REF:0000033 NCBI chr12:47,343,551...47,356,509
Ensembl chr12:41,682,900...41,695,641 		JBrowse link
G Oasl2 2'-5' oligoadenylate synthetase-like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:47,369,829...47,383,337
Ensembl chr12:41,709,435...41,722,547 		JBrowse link
G Plscr1 phospholipid scramblase 1 involved_in ISO
IEA
ISS		 (PMID:15308695)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:15308695 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:101,662,512...101,684,474
Ensembl chr 8:92,784,356...92,804,692 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO
IEA		 (PMID:19264593)
GO_REF:0000107		 RGD
Ensembl		 PMID:19264593 GO_REF:0000107 NCBI chr13:104,196,615...104,251,007
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Rnasel ribonuclease L involved_in ISO
IEA
IBA		 (PMID:23196181)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:23196181 GO_REF:0000033 GO_REF:0000107 NCBI chr13:68,446,641...68,460,804
Ensembl chr13:65,901,459...65,908,704 		JBrowse link
G Rsad2 radical S-adenosyl methionine domain containing 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:21880757)
(PMID:21957124)		 Ensembl
RGD		 PMID:21880757 PMID:21957124 GO_REF:0000107 NCBI chr 6:48,774,985...48,788,245
Ensembl chr 6:43,047,658...43,059,699 		JBrowse link
G Shfl shiftless antiviral inhibitor of ribosomal frameshifting involved_in ISO
IEA
ISS		 (PMID:26735137)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:26735137 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:27,683,560...27,690,269
Ensembl chr 8:19,408,333...19,413,971 		JBrowse link
G Slpi secretory leukocyte peptidase inhibitor involved_in ISO (PMID:19333378) RGD PMID:19333378 NCBI chr 3:173,501,573...173,503,822
Ensembl chr 3:153,082,369...153,084,453 		JBrowse link
G Srpk1 SRSF protein kinase 1 involved_in ISO
IEA		 (PMID:12417631)
GO_REF:0000107		 RGD
Ensembl		 PMID:12417631 GO_REF:0000107 NCBI chr20:6,647,539...6,684,129
Ensembl chr20:6,645,809...6,682,134 		JBrowse link
G Srpk2 SRSF protein kinase 2 involved_in ISO
IEA		 (PMID:12417631)
GO_REF:0000107		 RGD
Ensembl		 PMID:12417631 GO_REF:0000107 NCBI chr 4:12,356,983...12,548,345
Ensembl chr 4:11,464,674...11,655,990 		JBrowse link
G Tnf tumor necrosis factor involved_in ISO
IEA		 (PMID:10490959)
GO_REF:0000107		 RGD
Ensembl		 PMID:10490959 GO_REF:0000107 NCBI chr20:3,626,685...3,629,303
Ensembl chr20:3,622,011...3,624,629 		JBrowse link
G Trim6 tripartite motif containing 6 involved_in ISO
IEA		 (PMID:24882218)
GO_REF:0000107		 RGD
Ensembl		 PMID:24882218 GO_REF:0000107 NCBI chr 1:168,095,619...168,108,809
Ensembl chr 1:158,683,746...158,696,914 		JBrowse link
G Zc3hav1 zinc finger CCCH-type containing, antiviral 1 involved_in ISO
IEA
IDA		 (PMID:21102435)
GO_REF:0000107
PMID:21876179
(PMID:21876179)		 RGD
Ensembl		 PMID:21102435 PMID:21876179 PMID:21876179 GO_REF:0000107, RGD:8554819 NCBI chr 4:67,979,055...68,029,353
Ensembl chr 4:67,012,185...67,062,428 		JBrowse link
G Znfx1 zinc finger, NFX1-type containing 1 involved_in ISO
IEA		 (PMID:31685995)
GO_REF:0000107		 RGD
Ensembl		 PMID:31685995 GO_REF:0000107 NCBI chr 3:176,183,111...176,210,812
Ensembl chr 3:155,764,980...155,821,242 		JBrowse link
negative stranded viral RNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within ISO
IEA		 (PMID:24550300)
GO_REF:0000107		 RGD
Ensembl		 PMID:24550300 GO_REF:0000107 NCBI chr 9:95,869,839...95,905,354
Ensembl chr 9:88,422,038...88,457,529 		JBrowse link
G Atg16l2 autophagy related 16-like 2 acts_upstream_of_or_within ISO
IEA		 (PMID:24550300)
GO_REF:0000107		 RGD
Ensembl		 PMID:24550300 GO_REF:0000107 NCBI chr 1:165,100,946...165,123,307
Ensembl chr 1:155,684,564...155,703,420 		JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within ISO
IEA		 (PMID:24550300)
GO_REF:0000107		 RGD
Ensembl		 PMID:24550300 GO_REF:0000107 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:47,798,290...47,889,209 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO (PMID:24550300) RGD PMID:24550300 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:147,718,752...147,925,593 		JBrowse link
positive regulation by host of viral genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Haus8l2 HAUS augmin-like complex, subunit 8 like 2 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr11:19,074,905...19,077,014
Ensembl chr11:5,628,427...5,630,533 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in IEA
ISO		 GO_REF:0000107
(PMID:26581985)		 Ensembl
RGD		 PMID:26581985 GO_REF:0000107 NCBI chr 8:50,080,514...50,084,376
Ensembl chr 8:41,183,264...41,187,259 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr18:22,119,677...22,203,546
Ensembl chr18:21,845,295...21,929,048 		JBrowse link
G Ppib peptidylprolyl isomerase B involved_in ISO
IEA		 (PMID:15989969)
GO_REF:0000107		 RGD
Ensembl		 PMID:15989969 GO_REF:0000107 NCBI chr 8:75,498,966...75,504,823
Ensembl chr 8:66,603,861...66,630,428 		JBrowse link
G Stom stomatin involved_in ISO
IEA		 (PMID:25262680)
GO_REF:0000107		 RGD
Ensembl		 PMID:25262680 GO_REF:0000107 NCBI chr 3:39,042,503...39,064,818
Ensembl chr 3:18,644,378...18,667,354 		JBrowse link
G Tbc1d20 TBC1 domain family, member 20 involved_in ISO
IEA		 (PMID:17686842)
GO_REF:0000107		 RGD
Ensembl		 PMID:17686842 GO_REF:0000107 NCBI chr 3:161,228,699...161,247,319
Ensembl chr 3:140,768,537...140,785,121 		JBrowse link
G Vapa VAMP associated protein A involved_in ISO (PMID:19515777) RGD PMID:19515777 NCBI chr 9:112,624,791...112,654,731
Ensembl chr 9:105,177,907...105,207,847 		JBrowse link
G Vapb VAMP associated protein B and C involved_in ISO (PMID:19515777) RGD PMID:19515777 NCBI chr 3:182,954,247...182,997,018
Ensembl chr 3:162,535,905...162,573,763 		JBrowse link
G Ythdc2 YTH N6-methyladenosine RNA binding protein C2 involved_in ISO
IEA		 (PMID:21559518)
GO_REF:0000107		 RGD
Ensembl		 PMID:21559518 GO_REF:0000107 NCBI chr18:37,517,286...37,582,551
Ensembl chr18:37,265,836...37,331,023 		JBrowse link
G Zfyve1 zinc finger FYVE-type containing 1 involved_in ISO
IEA		 (PMID:35551511)
GO_REF:0000107		 RGD
Ensembl		 PMID:35551511 GO_REF:0000107 NCBI chr 6:108,916,062...108,965,231
Ensembl chr 6:103,184,938...103,234,039 		JBrowse link
positive regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Top2a DNA topoisomerase II alpha involved_in IEA
ISO		 GO_REF:0000107
(PMID:16712776)		 Ensembl
RGD		 PMID:16712776 GO_REF:0000107 NCBI chr10:84,441,954...84,473,093
Ensembl chr10:83,945,735...83,976,874 		JBrowse link
G Top2b DNA topoisomerase II beta involved_in ISO
IEA		 (PMID:16712776)
GO_REF:0000107		 RGD
Ensembl		 PMID:16712776 GO_REF:0000107 NCBI chr15:11,482,089...11,542,464
Ensembl chr15:9,051,341...9,112,085 		JBrowse link
positive regulation of viral genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:18362360)
(PMID:18362360), (PMID:19651874)		 UniProt
Ensembl
RGD		 PMID:18362360 PMID:19651874 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:177,436,076...177,475,969
Ensembl chr 2:175,138,403...175,178,282 		JBrowse link
G Adarb1 adenosine deaminase, RNA-specific, B1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:21289159)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:21289159 GO_REF:0000024 GO_REF:0000107 NCBI chr20:11,222,171...11,350,416
Ensembl chr20:11,222,583...11,350,852 		JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 involved_in ISO
IEA		 (PMID:23386060)
GO_REF:0000107		 RGD
Ensembl		 PMID:23386060 GO_REF:0000107 NCBI chr16:58,478,882...58,498,046
Ensembl chr16:51,775,412...51,794,576 		JBrowse link
G Ddb1 damage-specific DNA binding protein 1 involved_in ISO (PMID:23137809) RGD PMID:23137809 NCBI chr 1:216,677,810...216,703,605
Ensembl chr 1:207,252,890...207,278,676 		JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked involved_in ISO (PMID:20862261) RGD PMID:20862261 NCBI chr  X:12,152,346...12,165,983
Ensembl chr  X:9,479,532...9,493,168 		JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 involved_in ISO
IEA		 (PMID:26567527)
GO_REF:0000107		 RGD
Ensembl		 PMID:26567527 GO_REF:0000107 NCBI chr12:26,947,443...27,026,913
Ensembl chr12:21,319,568...21,390,350 		JBrowse link
G Gbp7 guanylate binding protein 7 involved_in ISO (PMID:33408175) RGD PMID:33408175 NCBI chr 2:233,948,774...233,970,532
Ensembl chr 2:231,275,640...231,297,278 		JBrowse link
G Hacd3 3-hydroxyacyl-CoA dehydratase 3 involved_in ISO
IEA		 (PMID:18160438)
GO_REF:0000107		 RGD
Ensembl		 PMID:18160438 GO_REF:0000107 NCBI chr 8:74,396,441...74,433,700
Ensembl chr 8:65,501,240...65,538,507 		JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator involved_in ISO
IEA		 (PMID:26735137)
GO_REF:0000107		 RGD
Ensembl		 PMID:26735137 GO_REF:0000107 NCBI chr10:42,691,833...42,746,816
Ensembl chr10:42,191,325...42,243,371 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO
IEA		 (PMID:21191019)
GO_REF:0000107		 RGD
Ensembl		 PMID:21191019 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Nr5a2 nuclear receptor subfamily 5, group A, member 2 involved_in ISO
IEA		 (PMID:19264593)
GO_REF:0000107		 RGD
Ensembl		 PMID:19264593 GO_REF:0000107 NCBI chr13:50,865,253...50,985,107
Ensembl chr13:48,316,301...48,433,326 		JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 involved_in ISO (PMID:26735137) RGD PMID:26735137 NCBI chr 7:69,662,513...69,674,806
Ensembl chr 7:67,777,381...67,789,744 		JBrowse link
G Pde12 phosphodiesterase 12 involved_in IEA
ISO		 GO_REF:0000107
(PMID:15231837)		 Ensembl
RGD		 PMID:15231837 GO_REF:0000107 NCBI chr16:1,926,807...1,932,383
Ensembl chr16:1,915,386...1,925,887 		JBrowse link
G Pkn2 protein kinase N2 involved_in ISO (PMID:15364941) RGD PMID:15364941 NCBI chr 2:234,454,001...234,559,369
Ensembl chr 2:231,793,584...231,898,953 		JBrowse link
G Ppia peptidylprolyl isomerase A involved_in ISO (PMID:19932913) RGD PMID:19932913 NCBI chr14:85,491,223...85,496,884
Ensembl chr14:81,275,091...81,299,601 		JBrowse link
G Ppid peptidylprolyl isomerase D involved_in ISO (PMID:19932913) RGD PMID:19932913 NCBI chr 2:167,025,985...167,037,998
Ensembl chr 2:164,727,779...164,740,221 		JBrowse link
G Ppie peptidylprolyl isomerase E involved_in ISO (PMID:19932913) RGD PMID:19932913 NCBI chr 5:140,691,285...140,704,347
Ensembl chr 5:135,406,176...135,419,235 		JBrowse link
G Ppih peptidylprolyl isomerase H involved_in ISO
IEA		 (PMID:19932913)
GO_REF:0000107		 RGD
Ensembl		 PMID:19932913 GO_REF:0000107 NCBI chr 5:138,191,624...138,209,625
Ensembl chr 5:132,906,328...132,924,267 		JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein involved_in ISO
IEA		 (PMID:20614012)
GO_REF:0000107		 RGD
Ensembl		 PMID:20614012 GO_REF:0000107 NCBI chr19:40,219,235...40,225,543
Ensembl chr19:23,314,797...23,320,695 		JBrowse link
G Srpk1 SRSF protein kinase 1 involved_in ISO
IEA		 (PMID:20498328)
GO_REF:0000107		 RGD
Ensembl		 PMID:20498328 GO_REF:0000107 NCBI chr20:6,647,539...6,684,129
Ensembl chr20:6,645,809...6,682,134 		JBrowse link
G Srpk2 SRSF protein kinase 2 involved_in ISO
IEA		 (PMID:20498328)
GO_REF:0000107		 RGD
Ensembl		 PMID:20498328 GO_REF:0000107 NCBI chr 4:12,356,983...12,548,345
Ensembl chr 4:11,464,674...11,655,990 		JBrowse link
G Stau1 staufen double-stranded RNA binding protein 1 involved_in ISO
IEA		 (PMID:23907398)
GO_REF:0000107		 RGD
Ensembl		 PMID:23907398 GO_REF:0000107 NCBI chr 3:176,099,053...176,144,947
Ensembl chr 3:155,680,000...155,725,909 		JBrowse link
G Tarbp2 Tarbp2 subunit of RISC loading complex involved_in ISO
IEA
ISS		 (PMID:11641396)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:11641396 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:135,527,710...135,532,826
Ensembl chr 7:133,649,090...133,654,314 		JBrowse link
G Tmem39a transmembrane protein 39a involved_in ISO
IEA		 (PMID:31849860)
GO_REF:0000107		 RGD
Ensembl		 PMID:31849860 GO_REF:0000107 NCBI chr11:75,666,154...75,695,486
Ensembl chr11:62,160,631...62,189,964 		JBrowse link
G Trim38 tripartite motif containing 38 acts_upstream_of_or_within ISO (PMID:22539786) RGD PMID:22539786 NCBI chr17:41,774,419...41,787,709 JBrowse link
G Vapb VAMP associated protein B and C involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:16227268)		 UniProt
Ensembl
RGD		 PMID:16227268 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:182,954,247...182,997,018
Ensembl chr 3:162,535,905...162,573,763 		JBrowse link
regulation of viral genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator involved_in ISO (PMID:16950491) RGD PMID:16950491 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Ddx5 DEAD-box helicase 5 IMP RGD PMID:19224332 RGD:5128521 NCBI chr10:92,224,393...92,231,928
Ensembl chr10:91,723,508...91,732,283 		JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3719397 (PMID:17613256) RGD PMID:17613256 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Mir24-2 microRNA 24-2 acts_upstream_of_or_within ISO (PMID:17613256) RGD PMID:17613256 NCBI chr19:40,859,455...40,859,562
Ensembl chr19:23,954,683...23,954,790 		JBrowse link
G Mir93 microRNA 93 acts_upstream_of_or_within ISO (PMID:17613256) RGD PMID:17613256 NCBI chr12:22,156,844...22,156,930
Ensembl chr12:17,043,135...17,043,221 		JBrowse link
G Ppia peptidylprolyl isomerase A involved_in ISO
ISS		 (PMID:11250896)
GO_REF:0000024		 RGD
UniProt		 PMID:11250896 GO_REF:0000024 NCBI chr14:85,491,223...85,496,884
Ensembl chr14:81,275,091...81,299,601 		JBrowse link
G Ppial4d peptidylprolyl isomerase A (cyclophilin A)-like 4D involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr14:21,361,379...21,362,147
Ensembl chr14:21,006,538...21,007,310 		JBrowse link
single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 acts_upstream_of_or_within ISO (PMID:14963118) RGD PMID:14963118 NCBI chr20:12,740,105...12,763,054
Ensembl chr20:12,741,477...12,763,620 		JBrowse link
viral RNA genome replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcbp1 poly(rC) binding protein 1 involved_in ISO
IEA		 (PMID:12414943)
GO_REF:0000107		 RGD
Ensembl		 PMID:12414943 GO_REF:0000107 NCBI chr 4:120,530,100...120,532,107
Ensembl chr 4:118,972,661...118,976,500 		JBrowse link
G Pcbp2 poly(rC) binding protein 2 involved_in ISO (PMID:12414943) RGD PMID:12414943 NCBI chr 7:135,483,702...135,508,254
Ensembl chr 7:133,605,573...133,629,863 		JBrowse link
Term paths to the root