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ONTOLOGY REPORT - ANNOTATIONS

Term:RNA polymerase II, holoenzyme
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Accession:GO:0016591 term browser browse the term
Definition:A nuclear DNA-directed RNA polymerase complex containing an RNA polymerase II core enzyme as well as additional proteins and transcription factor complexes, that are capable of promoter recognition and transcription initiation from an RNA polymerase II promoter in vivo. These additional components may include general transcription factor complexes TFIIA, TFIID, TFIIE, TFIIF, or TFIIH, as well as Mediator, SWI/SNF, GCN5, or SRBs and confer the ability to recognize promoters.
Synonyms:exact_synonym: DNA-directed RNA polymerase II, holoenzyme


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RNA polymerase II, holoenzyme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07043557.1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr19:22,481,952...22,483,036 JBrowse link
G Myzap myocardial zonula adherens protein part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:72,155,817...72,243,036
Ensembl chr 8:72,131,530...72,243,036 		JBrowse link
G Polr2m RNA polymerase II subunit M part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:72,131,992...72,139,423
Ensembl chr 8:72,131,530...72,243,036 		JBrowse link
Cdc73/Paf1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73 part_of ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:16307923), (PMID:18987311), (PMID:20178742)		 UniProt
GO_Central
Ensembl
RGD		 PMID:16307923 PMID:18987311 PMID:20178742 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656 		JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component part_of ISO
IBA		 (PMID:16307923), (PMID:20178742)
UniProtKB:Q8JZM7 (PMID:27749823)
GO_REF:0000033
UniProtKB:Q8JZM7 (MGI:6203683|PMID:27749823)		 RGD
GO_Central		 PMID:16307923 PMID:20178742 PMID:27749823 GO_REF:0000033 MGI:6203683 NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303 		JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component part_of ISS
ISO		 GO_REF:0000024
(PMID:16307923), (PMID:18987311), (PMID:20178742)		 UniProt
RGD		 PMID:16307923 PMID:18987311 PMID:20178742 GO_REF:0000024 NCBI chr 8:76,199,547...76,223,983
Ensembl chr 8:76,199,099...76,223,983 		JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component part_of ISS
ISO
IBA		 GO_REF:0000024
UniProtKB:Q8JZM7 (PMID:27749823)
GO_REF:0000033
UniProtKB:Q8JZM7 (MGI:6203683|PMID:27749823)
(PMID:16307923), (PMID:20178742)		 UniProt
RGD
GO_Central		 PMID:16307923 PMID:20178742 PMID:27749823 GO_REF:0000024 GO_REF:0000033 MGI:6203683 NCBI chr 1:83,683,654...83,689,233
Ensembl chr 1:83,668,813...83,689,237 		JBrowse link
G Pex2 peroxisomal biogenesis factor 2 part_of ISO
IEA
IBA		 (PMID:18987311)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:18987311 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:96,050,380...96,072,928
Ensembl chr 2:96,045,958...96,073,404 		JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) part_of ISO
IBA		 (PMID:20178742)
UniProtKB:Q8JZM7 (PMID:27749823)
GO_REF:0000033
UniProtKB:Q8JZM7 (MGI:6203683|PMID:27749823)		 RGD
GO_Central		 PMID:20178742 PMID:27749823 GO_REF:0000033 MGI:6203683 NCBI chr 3:106,659,363...106,718,956
Ensembl chr 3:106,659,308...106,718,970 		JBrowse link
G Skic8 SKI8 subunit of superkiller complex part_of ISO
IBA
IEA
ISS		 (PMID:20178742)
GO_REF:0000033
GO_REF:0000107
UniProtKB:Q8JZM7 (MGI:6203683|PMID:27749823)
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:20178742 PMID:27749823 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:6203683 NCBI chr 8:55,103,542...55,120,837
Ensembl chr 8:55,103,545...55,120,813 		JBrowse link
core TFIIH complex portion of holo TFIIH complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2h2 general transcription factor IIH subunit 2 part_of ISS
ISO		 GO_REF:0000024
(PMID:27193682)		 UniProt
RGD		 PMID:27193682 GO_REF:0000024 NCBI chr 2:31,623,752...31,652,697
Ensembl chr 2:31,624,678...31,652,592 		JBrowse link
G Gtf2h3 general transcription factor IIH subunit 3 part_of ISO
IEA
ISS		 (PMID:27193682)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:27193682 GO_REF:0000024 GO_REF:0000107 NCBI chr12:32,009,010...32,025,484
Ensembl chr12:32,009,014...32,025,497 		JBrowse link
G Gtf2h4 general transcription factor 2H subunit 4 part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr20:3,071,328...3,076,990
Ensembl chr20:3,071,328...3,076,984 		JBrowse link
RNA polymerase II, core complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC109542.1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:196,570,210...196,573,077 JBrowse link
G LOC120098305 DNA-directed RNA polymerases I, II, and III subunit RPABC3-like part_of IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr18:1,257,666...1,258,121
Ensembl chr18:1,257,666...1,258,121 		JBrowse link
G Polr2a RNA polymerase II subunit A part_of ISO
IBA		 (PMID:9852112)
GO_REF:0000033		 RGD
GO_Central		 PMID:9852112 GO_REF:0000033 NCBI chr10:54,452,438...54,478,486
Ensembl chr10:54,452,441...54,478,455 		JBrowse link
G Polr2b RNA polymerase II subunit B part_of ISO
IBA		 (PMID:9852112)
GO_REF:0000033		 RGD
GO_Central		 PMID:9852112 GO_REF:0000033 NCBI chr14:30,797,228...30,834,916
Ensembl chr14:30,797,228...30,834,916 		JBrowse link
G Polr2c RNA polymerase II subunit C part_of ISO
IBA		 (PMID:9852112)
GO_REF:0000033		 RGD
GO_Central		 PMID:9852112 GO_REF:0000033 NCBI chr19:10,158,153...10,164,935
Ensembl chr19:10,157,823...10,164,945 		JBrowse link
G Polr2d RNA polymerase II subunit D part_of ISO
IBA		 (PMID:9528765), (PMID:9852112)
GO_REF:0000033		 RGD
GO_Central		 PMID:9528765 PMID:9852112 GO_REF:0000033 NCBI chr18:23,418,097...23,425,228
Ensembl chr18:23,418,097...23,425,228 		JBrowse link
G Polr2e RNA polymerase II, I and III subunit E part_of ISO
IBA
IEA
ISS		 (PMID:9852112)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:9852112 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:9,666,695...9,670,638
Ensembl chr 7:9,666,716...9,670,643 		JBrowse link
G Polr2f RNA polymerase II, I and III subunit F part_of TAS
IBA
ISS
ISO		 GO_REF:0000033
GO_REF:0000024
(PMID:9852112)		 GO_Central
UniProt
RGD		 PMID:9852112 PMID:10393248 GO_REF:0000024 GO_REF:0000033, RGD:1299534 NCBI chr 7:110,712,528...110,724,234
Ensembl chr 7:110,712,572...110,724,234 		JBrowse link
G Polr2g RNA polymerase II subunit G part_of ISO
IBA
IEA
ISS		 (PMID:9852112)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:9852112 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:205,689,160...205,692,537
Ensembl chr 1:205,689,160...205,692,686 		JBrowse link
G Polr2h RNA polymerase II, I and III subunit H part_of ISO
IBA		 (PMID:9852112)
GO_REF:0000033		 RGD
GO_Central		 PMID:9852112 GO_REF:0000033 NCBI chr11:80,192,017...80,197,468
Ensembl chr11:80,192,032...80,197,515
Ensembl chr10:80,192,032...80,197,515 		JBrowse link
G Polr2i RNA polymerase II subunit I part_of ISO
IBA		 (PMID:9852112)
GO_REF:0000033		 RGD
GO_Central		 PMID:9852112 GO_REF:0000033 NCBI chr 1:85,483,515...85,484,952
Ensembl chr 1:85,483,515...85,484,952 		JBrowse link
G Polr2j RNA polymerase II subunit J part_of ISO
IBA		 (PMID:9852112)
(PMID:9099876)
GO_REF:0000033		 RGD
GO_Central		 PMID:9099876 PMID:9852112 GO_REF:0000033 NCBI chr12:20,543,038...20,548,590
Ensembl chr12:20,543,038...20,548,594 		JBrowse link
G Polr2k RNA polymerase II, I and III subunit K part_of ISO
IBA		 (PMID:9852112)
GO_REF:0000033		 RGD
GO_Central		 PMID:9852112 GO_REF:0000033 NCBI chr 7:67,347,118...67,359,466
Ensembl chr 7:67,356,113...67,357,668 		JBrowse link
G Polr2l RNA polymerase II, I and III subunit L part_of ISO
IBA		 (PMID:9852112)
GO_REF:0000033		 RGD
GO_Central		 PMID:9852112 GO_REF:0000033 NCBI chr 1:196,570,051...196,572,060 JBrowse link
G Polr2m RNA polymerase II subunit M part_of ISO UniProtKB:P19387|UniProtKB:P24928|UniProtKB:P30876 (PMID:30190596) RGD PMID:30190596 NCBI chr 8:72,131,992...72,139,423
Ensembl chr 8:72,131,530...72,243,036 		JBrowse link
transcription factor TFIIA complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07015889.1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr14:78,776,373...78,776,700 JBrowse link
G ENSRNOG00000064241 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 5:97,975,779...97,977,813 JBrowse link
G ENSRNOG00000067796 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr15:22,674,189...22,674,524 JBrowse link
G Gtf2a1 general transcription factor 2A subunit 1 part_of IEA
ISO
IBA		 GO_REF:0000002
(PMID:7724559), (PMID:8626665)
(PMID:15927180)
GO_REF:0000033		 InterPro
RGD
GO_Central		 PMID:7724559 PMID:8626665 PMID:15927180 GO_REF:0000002 GO_REF:0000033 NCBI chr 6:110,488,891...110,521,502
Ensembl chr 6:110,488,931...110,521,511 		JBrowse link
G Gtf2a1l general transcription factor 2A subunit 1 like part_of IBA
ISO		 GO_REF:0000033
(PMID:15927180)		 GO_Central
RGD		 PMID:15927180 GO_REF:0000033 NCBI chr 6:5,752,814...5,834,797
Ensembl chr 6:5,752,823...5,836,472 		JBrowse link
G Gtf2a2 general transcription factor 2A subunit 2 part_of IEA
ISO
IBA		 GO_REF:0000002
(PMID:7724559), (PMID:7958899), (PMID:7958900), (PMID:8626665)
GO_REF:0000033		 InterPro
RGD
GO_Central		 PMID:7724559 PMID:7958899 PMID:7958900 PMID:8626665 GO_REF:0000002 GO_REF:0000033 NCBI chr 8:70,662,447...70,675,576
Ensembl chr 8:70,662,428...70,675,569 		JBrowse link
G Tbp TATA box binding protein part_of ISO (PMID:7724559) RGD PMID:7724559 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016 		JBrowse link
G Tbpl1 TATA-box binding protein like 1 part_of ISO (PMID:15927180) RGD PMID:15927180 NCBI chr 1:22,777,892...22,803,305
Ensembl chr 1:22,778,459...22,803,122
Ensembl chr 1:22,778,459...22,803,122 		JBrowse link
transcription factor TFIID complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102 		JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329 		JBrowse link
G Gtf2a1 general transcription factor 2A subunit 1 part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr 6:110,488,891...110,521,502
Ensembl chr 6:110,488,931...110,521,511 		JBrowse link
G Gtf2a2 general transcription factor 2A subunit 2 part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr 8:70,662,447...70,675,576
Ensembl chr 8:70,662,428...70,675,569 		JBrowse link
G Gtf2b general transcription factor IIB part_of ISO
IEA		 (PMID:27193682)
GO_REF:0000107		 RGD
Ensembl		 PMID:27193682 GO_REF:0000107 NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651 		JBrowse link
G Gtf2e1 general transcription factor IIE subunit 1 part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr11:63,182,073...63,215,349
Ensembl chr11:63,182,349...63,213,942 		JBrowse link
G Gtf2e2 general transcription factor IIE subunit 2 part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr16:58,399,307...58,449,467
Ensembl chr16:58,399,107...58,449,371 		JBrowse link
G Gtf2f1 general transcription factor IIF subunit 1 part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr 9:1,844,027...1,853,455
Ensembl chr 9:1,843,901...1,853,423 		JBrowse link
G Gtf2h2 general transcription factor IIH subunit 2 part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr 2:31,623,752...31,652,697
Ensembl chr 2:31,624,678...31,652,592 		JBrowse link
G Gtf2h3 general transcription factor IIH subunit 3 part_of ISO
IEA		 (PMID:27193682)
GO_REF:0000107		 RGD
Ensembl		 PMID:27193682 GO_REF:0000107 NCBI chr12:32,009,010...32,025,484
Ensembl chr12:32,009,014...32,025,497 		JBrowse link
G Gtf2h4 general transcription factor 2H subunit 4 part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr20:3,071,328...3,076,990
Ensembl chr20:3,071,328...3,076,984 		JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 part_of ISO (PMID:14580349), (PMID:23332750), (PMID:24927529), (PMID:25412659), (PMID:27007846), (PMID:29111974), (PMID:8625415) RGD PMID:8625415 PMID:14580349 PMID:23332750 PMID:24927529 PMID:25412659 More... NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 part_of IBA
ISO		 GO_REF:0000033
(PMID:14580349), (PMID:15099517), (PMID:23332750), (PMID:29111974), (PMID:7729427), (PMID:7923369)		 GO_Central
RGD		 PMID:7729427 PMID:7923369 PMID:14580349 PMID:15099517 PMID:23332750 More... GO_REF:0000033 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376 		JBrowse link
G Taf11 TATA-box binding protein associated factor 11 part_of IEA
ISO
IBA		 GO_REF:0000002
(PMID:14580349), (PMID:23332750), (PMID:29111974), (PMID:7729427), (PMID:8670810)
GO_REF:0000033		 InterPro
RGD
GO_Central		 PMID:7729427 PMID:8670810 PMID:14580349 PMID:23332750 PMID:29111974 GO_REF:0000002 GO_REF:0000033 NCBI chr20:5,955,774...5,963,593
Ensembl chr20:5,955,777...5,961,905 		JBrowse link
G Taf11l1 TATA-box binding protein associated factor 11 like 1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:73,781,281...73,783,163
Ensembl chr10:73,781,269...73,782,563 		JBrowse link
G Taf12 TATA-box binding protein associated factor 12 part_of IBA
ISO		 GO_REF:0000033
(PMID:14580349), (PMID:23332750), (PMID:29111974)		 GO_Central
RGD		 PMID:14580349 PMID:23332750 PMID:29111974 GO_REF:0000033 NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849 		JBrowse link
G Taf13 TATA-box binding protein associated factor 13 part_of IBA
ISO		 GO_REF:0000033
(PMID:23332750), (PMID:29111974), (PMID:7729427)		 GO_Central
RGD		 PMID:7729427 PMID:23332750 PMID:29111974 GO_REF:0000033 NCBI chr 2:196,205,219...196,215,882
Ensembl chr 2:196,205,243...196,215,878 		JBrowse link
G Taf2 TATA-box binding protein associated factor 2 part_of IBA
ISO		 GO_REF:0000033
(PMID:10409744), (PMID:14580349), (PMID:23332750), (PMID:27007846), (PMID:29111974), (PMID:9774672)		 GO_Central
RGD		 PMID:9774672 PMID:10409744 PMID:14580349 PMID:23332750 PMID:27007846 More... GO_REF:0000033 NCBI chr 7:86,422,613...86,479,616
Ensembl chr 7:86,422,613...86,479,616 		JBrowse link
G Taf3 TATA-box binding protein associated factor 3 part_of ISO (PMID:11438666), (PMID:23332750), (PMID:29111974) RGD PMID:11438666 PMID:23332750 PMID:29111974 NCBI chr17:68,455,389...68,608,367
Ensembl chr17:68,423,909...68,608,367 		JBrowse link
G Taf4 TATA-box binding protein associated factor 4 part_of IBA
ISO		 GO_REF:0000033
(PMID:14580349), (PMID:23332750), (PMID:29111974)		 GO_Central
RGD		 PMID:14580349 PMID:23332750 PMID:29111974 GO_REF:0000033 NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356 		JBrowse link
G Taf4b TATA-box binding protein associated factor 4b part_of ISO
IBA		 (PMID:29111974)
GO_REF:0000033		 RGD
GO_Central		 PMID:29111974 GO_REF:0000033 NCBI chr18:5,952,737...6,086,408
Ensembl chr18:5,952,769...6,068,307 		JBrowse link
G Taf5 TATA-box binding protein associated factor 5 part_of IBA
ISO		 GO_REF:0000033
(PMID:14580349), (PMID:23332750), (PMID:29111974), (PMID:9045704)		 GO_Central
RGD		 PMID:9045704 PMID:14580349 PMID:23332750 PMID:29111974 GO_REF:0000033 NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914 		JBrowse link
G Taf5l1 TATA-box binding protein associated factor 5 like 1 NOT|part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:51,991,704...52,011,001
Ensembl chr19:51,991,708...52,011,295 		JBrowse link
G Taf6 TATA-box binding protein associated factor 6 part_of ISO
IBA
IEA		 (PMID:8262073)
(PMID:14580349), (PMID:23332750), (PMID:27007846), (PMID:29111974)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:8262073 PMID:14580349 PMID:23332750 PMID:27007846 PMID:29111974 GO_REF:0000033 GO_REF:0000107 NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247 		JBrowse link
G Taf6l TATA-box binding protein associated factor 6 like part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:205,672,147...205,684,721
Ensembl chr 1:205,672,149...205,684,655 		JBrowse link
G Taf7 TATA-box binding protein associated factor 7 part_of IBA
ISO		 GO_REF:0000033
(PMID:14580349), (PMID:23332750), (PMID:24927529), (PMID:25412659), (PMID:27007846), (PMID:29111974), (PMID:7824954)
(PMID:10438527), (PMID:28893950)		 GO_Central
RGD		 PMID:7824954 PMID:10438527 PMID:14580349 PMID:23332750 PMID:24927529 More... GO_REF:0000033 NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134 		JBrowse link
G Taf7l TATA-box binding protein associated factor 7-like part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:97,660,222...97,675,241
Ensembl chr  X:97,660,222...97,675,023 		JBrowse link
G Taf7l-ps1 TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:51,763,259...51,764,401
Ensembl chr 7:51,763,259...51,764,401 		JBrowse link
G Taf8 TATA-box binding protein associated factor 8 part_of IBA
ISO		 GO_REF:0000033
(PMID:14580349), (PMID:23332750), (PMID:27007846), (PMID:29111974)		 GO_Central
RGD		 PMID:14580349 PMID:23332750 PMID:27007846 PMID:29111974 GO_REF:0000033 NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717 		JBrowse link
G Taf8l1 TATA-box binding protein associated factor 8 like 1 part_of IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 6:99,293,907...99,295,840
Ensembl chr 6:99,294,126...99,295,052 		JBrowse link
G Taf9 TATA-box binding protein associated factor 9 part_of IEA
ISO
IBA		 GO_REF:0000107
(PMID:14580349), (PMID:15899866), (PMID:23332750), (PMID:29111974)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:14580349 PMID:15899866 PMID:23332750 PMID:29111974 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769 		JBrowse link
G Taf9b TATA-box binding protein associated factor 9b part_of ISO
IBA		 (PMID:15899866), (PMID:29111974)
GO_REF:0000033		 RGD
GO_Central		 PMID:15899866 PMID:29111974 GO_REF:0000033 NCBI chr  X:71,289,290...71,300,142
Ensembl chr  X:71,289,290...71,300,604 		JBrowse link
G Tbp TATA box binding protein part_of IDA
ISO		 (PMID:14580349), (PMID:23332750), (PMID:27007846), (PMID:27193682), (PMID:29111974), (PMID:7729427)
(PMID:28893950)		 RGD PMID:7729427 PMID:14580349 PMID:23332750 PMID:27007846 PMID:27193682 More... RGD:2306552 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016 		JBrowse link
G Tcea1 transcription elongation factor A1 part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr 5:14,631,454...14,668,769
Ensembl chr 5:14,631,454...14,668,745
Ensembl chr15:14,631,454...14,668,745 		JBrowse link
transcription factor TFIIE complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2e1 general transcription factor IIE subunit 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:63,182,073...63,215,349
Ensembl chr11:63,182,349...63,213,942 		JBrowse link
G Gtf2e2 general transcription factor IIE subunit 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:58,399,307...58,449,467
Ensembl chr16:58,399,107...58,449,371 		JBrowse link
transcription factor TFIIF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENSRNOG00000067613 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr17:14,611,967...14,612,710 JBrowse link
G Gtf2f1 general transcription factor IIF subunit 1 part_of IBA
ISO		 GO_REF:0000033
(PMID:11183778)		 GO_Central
RGD		 PMID:11183778 GO_REF:0000033 NCBI chr 9:1,844,027...1,853,455
Ensembl chr 9:1,843,901...1,853,423 		JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 part_of IEA
ISO
IBA		 GO_REF:0000002
(PMID:11183778)
GO_REF:0000033		 InterPro
RGD
GO_Central		 PMID:11183778 GO_REF:0000002 GO_REF:0000033 NCBI chr15:51,206,027...51,327,166
Ensembl chr15:51,206,031...51,327,253 		JBrowse link
transcription factor TFIIH holo complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnh cyclin H part_of ISS
ISO		 GO_REF:0000024
(PMID:9852112)		 UniProt
RGD		 PMID:9852112 GO_REF:0000024 NCBI chr 2:15,835,064...15,855,648
Ensembl chr 2:15,834,833...15,855,819 		JBrowse link
G Cdk7 cyclin-dependent kinase 7 part_of IDA
ISO
ISS		 (PMID:9852112)
GO_REF:0000024		 RGD
UniProt		 PMID:9852112 PMID:7553866 GO_REF:0000024, RGD:9590319 NCBI chr 2:31,840,558...31,865,422
Ensembl chr 2:31,840,558...31,865,383 		JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit part_of ISO (PMID:9852112) RGD PMID:9852112 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102 		JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit part_of ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:9852112)		 UniProt
GO_Central
RGD		 PMID:9852112 GO_REF:0000024 GO_REF:0000033 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329 		JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 IDA RGD PMID:7553866 RGD:9590319 NCBI chr15:51,206,027...51,327,166
Ensembl chr15:51,206,031...51,327,253 		JBrowse link
G Gtf2h1 general transcription factor IIH subunit 1 part_of IDA
IBA
ISO		 GO_REF:0000033
(PMID:9852112)		 GO_Central
RGD		 PMID:9852112 PMID:7553866 GO_REF:0000033, RGD:9590319 NCBI chr 1:97,321,417...97,349,455
Ensembl chr 1:97,321,394...97,349,455 		JBrowse link
G Gtf2h2 general transcription factor IIH subunit 2 part_of ISS
IBA
ISO
IEA		 GO_REF:0000024
GO_REF:0000033
(PMID:9852112)
GO_REF:0000104		 UniProt
GO_Central
RGD		 PMID:9852112 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 NCBI chr 2:31,623,752...31,652,697
Ensembl chr 2:31,624,678...31,652,592 		JBrowse link
G Gtf2h3 general transcription factor IIH subunit 3 part_of ISO
IBA
IEA
ISS		 (PMID:9852112)
GO_REF:0000033
GO_REF:0000104
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:9852112 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 NCBI chr12:32,009,010...32,025,484
Ensembl chr12:32,009,014...32,025,497 		JBrowse link
G Gtf2h4 general transcription factor 2H subunit 4 part_of ISO (PMID:9852112) RGD PMID:9852112 NCBI chr20:3,071,328...3,076,990
Ensembl chr20:3,071,328...3,076,984 		JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939 		JBrowse link
G LOC120103497 general transcription factor IIH subunit 5-like part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:27,109,209...27,114,478
Ensembl chr 6:27,111,331...27,111,546 		JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase part_of ISO
IBA		 (PMID:9852112)
GO_REF:0000033		 RGD
GO_Central		 PMID:9852112 GO_REF:0000033 NCBI chr 6:91,814,703...91,971,945
Ensembl chr 6:91,814,749...91,970,744 		JBrowse link
transcription factor TFIIK complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnh cyclin H part_of IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
(PMID:23393140), (PMID:8692841)		 Ensembl
GO_Central
RGD		 PMID:8692841 PMID:23393140 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:15,835,064...15,855,648
Ensembl chr 2:15,834,833...15,855,819 		JBrowse link
G Cdk7 cyclin-dependent kinase 7 part_of IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000002
GO_REF:0000033
(PMID:23393140), (PMID:8692841)		 Ensembl
InterPro
GO_Central
RGD		 PMID:8692841 PMID:23393140 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:31,840,558...31,865,422
Ensembl chr 2:31,840,558...31,865,383 		JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase part_of ISO (PMID:8692841) RGD PMID:8692841 NCBI chr 6:91,814,703...91,971,945
Ensembl chr 6:91,814,749...91,970,744 		JBrowse link
transcription factor TFTC complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kat2a lysine acetyltransferase 2A part_of ISO (PMID:10373431) RGD PMID:10373431 NCBI chr10:85,632,216...85,640,561
Ensembl chr10:85,632,216...85,640,166 		JBrowse link
G Supt3h SPT3 homolog, SAGA and STAGA complex component part_of ISO (PMID:10373431) RGD PMID:10373431 NCBI chr 9:15,878,296...16,206,768
Ensembl chr 9:15,868,287...16,206,706 		JBrowse link
G Tada3 transcriptional adaptor 3 part_of ISO (PMID:10373431) RGD PMID:10373431 NCBI chr 4:146,510,213...146,521,975
Ensembl chr 4:146,510,246...146,521,590 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 part_of ISO (PMID:10373431), (PMID:9603525) RGD PMID:9603525 PMID:10373431 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376 		JBrowse link
G Taf12 TATA-box binding protein associated factor 12 part_of ISO (PMID:9603525) RGD PMID:9603525 NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849 		JBrowse link
G Taf2 TATA-box binding protein associated factor 2 part_of ISO (PMID:10373431) RGD PMID:10373431 NCBI chr 7:86,422,613...86,479,616
Ensembl chr 7:86,422,613...86,479,616 		JBrowse link
G Taf4 TATA-box binding protein associated factor 4 part_of ISO (PMID:10373431), (PMID:9603525) RGD PMID:9603525 PMID:10373431 NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356 		JBrowse link
G Taf5 TATA-box binding protein associated factor 5 part_of ISO (PMID:10373431), (PMID:9603525) RGD PMID:9603525 PMID:10373431 NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914 		JBrowse link
G Taf5l1 TATA-box binding protein associated factor 5 like 1 part_of ISO (PMID:10373431) RGD PMID:10373431 NCBI chr19:51,991,704...52,011,001
Ensembl chr19:51,991,708...52,011,295 		JBrowse link
G Taf6 TATA-box binding protein associated factor 6 part_of ISO
IEA		 (PMID:9603525)
GO_REF:0000107		 RGD
Ensembl		 PMID:9603525 GO_REF:0000107 NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247 		JBrowse link
G Taf7 TATA-box binding protein associated factor 7 part_of ISO (PMID:9603525) RGD PMID:9603525 NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134 		JBrowse link
G Taf9 TATA-box binding protein associated factor 9 part_of ISO
IBA
IEA		 (PMID:15899866)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:15899866 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769 		JBrowse link
G Taf9b TATA-box binding protein associated factor 9b part_of ISO (PMID:15899866) RGD PMID:15899866 NCBI chr  X:71,289,290...71,300,142
Ensembl chr  X:71,289,290...71,300,604 		JBrowse link
G Trrap transformation/transcription domain-associated protein part_of ISO (PMID:10373431) RGD PMID:10373431 NCBI chr12:9,738,006...9,827,708
Ensembl chr12:9,738,006...9,827,674 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20814
    cellular anatomical structure 20574
      nucleoplasm 3587
        RNA polymerase II, holoenzyme 75
          Cdc73/Paf1 complex 7
          RNA polymerase II, core complex 15
          transcription factor TFIIA complex 8
          transcription factor TFIID complex + 35
          transcription factor TFIIE complex 2
          transcription factor TFIIF complex 3
          transcription factor TFIIH holo complex + 12
          transcription factor TFTC complex 14
Path 2
Term Annotations click to browse term
  cellular_component 20814
    cellular anatomical structure 20574
      organelle 14007
        membrane-bounded organelle 12605
          intracellular membrane-bounded organelle 12057
            nucleus 7485
              nuclear protein-containing complex 1306
                nuclear DNA-directed RNA polymerase complex 99
                  RNA polymerase II, holoenzyme 75
                    Cdc73/Paf1 complex 7
                    RNA polymerase II, core complex 15
                    transcription factor TFIIA complex 8
                    transcription factor TFIID complex + 35
                    transcription factor TFIIE complex 2
                    transcription factor TFIIF complex 3
                    transcription factor TFIIH holo complex + 12
                    transcription factor TFTC complex 14
paths to the root