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ONTOLOGY REPORT - ANNOTATIONS

Term:positive regulation of macroautophagy
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Accession:GO:0016239 term browser browse the term
Definition:Any process, such as recognition of nutrient depletion, that activates or increases the rate of macroautophagy to bring cytosolic macromolecules to the vacuole/lysosome for degradation.
Synonyms:exact_synonym: positive regulation of starvation-induced autophagy;   up regulation of macroautophagy;   upregulation of macroautophagy
 narrow_synonym: activation of macroautophagy;   stimulation of macroautophagy


show annotations for term's descendants           Sort by:
positive regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip3 BCL2 interacting protein 3 acts_upstream_of_or_within ISO
IEA		 UniProtKB:O60238 (PMID:19273585)
GO_REF:0000107		 RGD
Ensembl		 PMID:19273585 GO_REF:0000107 NCBI chr 1:203,137,778...203,154,962
Ensembl chr 1:193,708,167...193,725,359 		JBrowse link
G Bnip3l BCL2 interacting protein 3 like acts_upstream_of_or_within ISO
IEA		 UniProtKB:Q12983 (PMID:19273585)
GO_REF:0000107		 RGD
Ensembl		 PMID:19273585 GO_REF:0000107 NCBI chr15:45,350,081...45,373,213
Ensembl chr15:41,174,594...41,197,803 		JBrowse link
G Dcn decorin acts_upstream_of_or_within ISO UniProtKB:P35968 (PMID:23798385) RGD PMID:23798385 NCBI chr 7:34,167,973...34,208,004
Ensembl chr 7:32,281,252...32,321,270 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO
IEA		 (PMID:20453062)
GO_REF:0000107
MGI:102548|MGI:2182627 (PMID:20453062)		 RGD
Ensembl		 PMID:20453062 GO_REF:0000107 NCBI chr 1:7,547,369...7,673,449
Ensembl chr 1:5,727,066...5,920,555 		JBrowse link
G Gnai3 G protein subunit alpha i3 involved_in ISO (PMID:12642577) RGD PMID:12642577 NCBI chr 2:198,430,920...198,468,874
Ensembl chr 2:195,742,642...195,780,742 		JBrowse link
G Gpsm1 G-protein signaling modulator 1 involved_in ISO (PMID:12642577) RGD PMID:12642577 NCBI chr 3:29,538,929...29,565,921
Ensembl chr 3:9,128,636...9,167,827 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO
IEA		 MGI:2386679 (PMID:19273585)
GO_REF:0000107		 RGD
Ensembl		 PMID:19273585 GO_REF:0000107 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Hmox1 heme oxygenase 1 acts_upstream_of_or_within ISO
IEA		 MGI:2429784 (PMID:20705711)
GO_REF:0000107		 RGD
Ensembl		 PMID:20705711 GO_REF:0000107 NCBI chr19:13,452,365...13,479,823
Ensembl chr19:13,467,244...13,474,079 		JBrowse link
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma involved_in ISO (PMID:23778976) RGD PMID:23778976 NCBI chr  X:157,358,279...157,397,563
Ensembl chr  X:152,216,596...152,239,499 		JBrowse link
G Il4 interleukin 4 involved_in ISS
ISO		 GO_REF:0000024
(PMID:26416964)		 UniProt
RGD		 PMID:26416964 GO_REF:0000024 NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750 		JBrowse link
G Kdr kinase insert domain receptor acts_upstream_of_or_within ISO
IEA		 UniProtKB:P07585 (PMID:23798385)
GO_REF:0000107		 RGD
Ensembl		 PMID:23798385 GO_REF:0000107 NCBI chr14:32,572,031...32,615,204
Ensembl chr14:32,217,871...32,261,018 		JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator involved_in ISO
IEA		 (PMID:22354037)
GO_REF:0000107		 RGD
Ensembl		 PMID:22354037 GO_REF:0000107 NCBI chr10:42,691,833...42,746,816
Ensembl chr10:42,191,325...42,243,371 		JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 involved_in ISO (PMID:23778976) RGD PMID:23778976 NCBI chr 5:51,149,524...51,212,012
Ensembl chr 5:46,357,931...46,415,597 		JBrowse link
G Pafah1b2 platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 involved_in ISO
IEA		 (PMID:22354037)
GO_REF:0000107		 RGD
Ensembl		 PMID:22354037 GO_REF:0000107 NCBI chr 8:46,260,069...46,312,073
Ensembl chr 8:46,261,064...46,279,833 		JBrowse link
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase acts_upstream_of_or_within ISO
IEA		 (PMID:17476689)
GO_REF:0000107		 RGD
Ensembl		 PMID:17476689 GO_REF:0000107 NCBI chr  X:17,289,509...17,294,778
Ensembl chr  X:14,617,582...14,622,851 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO
IEA		 (PMID:20871098)
GO_REF:0000107		 RGD
Ensembl		 PMID:20871098 GO_REF:0000107 NCBI chr 5:155,813,838...155,825,950
Ensembl chr 5:150,530,523...150,542,635 		JBrowse link
G Rab12 RAB12, member RAS oncogene family involved_in ISO (PMID:23357852) RGD PMID:23357852 NCBI chr 9:106,480,301...106,506,895
Ensembl chr 9:106,480,301...106,506,910 		JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISO
IEA
ISS		 UniProtKB:Q96DA2 (PMID:27103069), (PMID:27334615)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:27103069 PMID:27334615 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:54,562,570...54,587,649
Ensembl chr 5:49,766,325...49,791,408 		JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in ISO
IEA
IBA		 (PMID:26416964)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000033		 RGD
Ensembl
InterPro
GO_Central		 PMID:26416964 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:83,152,139...83,172,683
Ensembl chr 9:75,703,750...75,723,525 		JBrowse link
G Scoc short coiled-coil protein involved_in ISO
ISS		 (PMID:22354037)
GO_REF:0000024		 RGD
GO_Central		 PMID:22354037 GO_REF:0000024 NCBI chr19:24,659,651...24,689,237
Ensembl chr19:24,659,651...24,693,217 		JBrowse link
G Sesn1 sestrin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:46,876,918...46,970,010
Ensembl chr20:45,294,871...45,387,697 		JBrowse link
G Sesn2 sestrin 2 involved_in ISO
IEA
IBA		 (PMID:23274085)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:23274085 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:149,986,304...150,005,255
Ensembl chr 5:144,701,530...144,721,260 		JBrowse link
G Sesn3 sestrin 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:19,415,307...19,470,943
Ensembl chr 8:11,133,678...11,185,842 		JBrowse link
G Sirt1 sirtuin 1 involved_in ISO
IEA		 (PMID:18296641)
GO_REF:0000107
(PMID:18296641), (PMID:21189328)		 RGD
Ensembl		 PMID:18296641 PMID:21189328 GO_REF:0000107 NCBI chr20:25,305,953...25,328,000
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in ISS
IEA
ISO
IBA		 GO_REF:0000024
GO_REF:0000107
(PMID:30568238)
GO_REF:0000033
(PMID:30568238), (PMID:30842662), (PMID:37535724)		 UniProt
Ensembl
RGD
GO_Central		 PMID:30568238 PMID:30842662 PMID:37535724 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr18:27,606,196...27,612,544
Ensembl chr18:27,332,119...27,338,335 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit involved_in ISO
IEA		 (PMID:22354037)
GO_REF:0000107		 RGD
Ensembl		 PMID:22354037 GO_REF:0000107 NCBI chr 1:92,714,276...92,745,489
Ensembl chr 1:83,586,718...83,616,892 		JBrowse link
G Tbk1 TANK-binding kinase 1 involved_in ISO
IEA		 (PMID:27103069)
GO_REF:0000107		 RGD
Ensembl		 PMID:27103069 GO_REF:0000107 NCBI chr 7:58,963,319...58,996,357
Ensembl chr 7:57,077,830...57,110,892 		JBrowse link
G Trim13 tripartite motif-containing 13 involved_in ISO
IBA
IEA		 (PMID:22178386)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:22178386 GO_REF:0000033 GO_REF:0000107 NCBI chr15:39,909,587...39,948,719
Ensembl chr15:35,734,107...35,772,677 		JBrowse link
G Tsc1 TSC complex subunit 1 IDA RGD PMID:23435171 RGD:10448950 NCBI chr 3:32,367,434...32,416,565
Ensembl chr 3:11,979,729...12,015,674 		JBrowse link
G Tsc2 TSC complex subunit 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:23778976)
(PMID:20453062)
UniProtKB:Q61037 (PMID:23778976)		 Ensembl
RGD		 PMID:20453062 PMID:23778976 GO_REF:0000107 NCBI chr10:14,125,679...14,160,317
Ensembl chr10:13,621,136...13,655,951 		JBrowse link
G Wac WW domain containing adaptor with coiled-coil involved_in ISO (PMID:22354037) RGD PMID:22354037 NCBI chr17:60,617,702...60,677,771
Ensembl chr17:55,923,123...55,982,301 		JBrowse link
G Wdr24 WD repeat domain 24 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:15,346,835...15,353,384
Ensembl chr10:14,843,728...14,848,864 		JBrowse link
positive regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag3 BAG cochaperone 3 involved_in ISO
IEA		 (PMID:18006506)
GO_REF:0000107		 RGD
Ensembl		 PMID:18006506 GO_REF:0000107 NCBI chr 1:192,533,460...192,557,281
Ensembl chr 1:183,102,871...183,126,858 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:22017874)		 UniProt
RGD		 PMID:22017874 GO_REF:0000024 NCBI chr 3:161,170,295...161,217,073
Ensembl chr 3:140,709,991...140,756,696 		JBrowse link
G Hspb8 heat shock protein family B (small) member 8 involved_in ISO
IEA		 (PMID:18006506)
GO_REF:0000107		 RGD
Ensembl		 PMID:18006506 GO_REF:0000107 NCBI chr12:45,835,899...45,866,449
Ensembl chr12:40,176,532...40,191,185 		JBrowse link
G Htt huntingtin involved_in IEA
ISO		 GO_REF:0000107
(PMID:25686248)		 Ensembl
RGD		 PMID:25686248 GO_REF:0000107 NCBI chr14:80,070,456...80,219,668
Ensembl chr14:75,845,836...75,995,070 		JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in IEA
ISO		 GO_REF:0000107
(PMID:31857589)		 Ensembl
RGD		 PMID:31857589 GO_REF:0000107 NCBI chr 1:212,325,089...212,332,640
Ensembl chr 1:202,895,751...202,903,458 		JBrowse link
G Zdhhc19 zinc finger DHHC-type palmitoyltransferase 19 involved_in ISO
IEA		 (PMID:37802024)
GO_REF:0000107		 RGD
Ensembl		 PMID:37802024 GO_REF:0000107 NCBI chr11:81,782,899...81,794,105
Ensembl chr11:68,277,848...68,288,954 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in ISO
IEA		 (PMID:30952800), (PMID:31271352)
GO_REF:0000107		 RGD
Ensembl		 PMID:30952800 PMID:31271352 GO_REF:0000107 NCBI chr 1:212,971,822...212,991,505
Ensembl chr 1:203,542,559...203,562,242 		JBrowse link
G Atg7 autophagy related 7 IMP RGD PMID:33372336 RGD:407571673 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:147,718,752...147,925,593 		JBrowse link
G Becn1 beclin 1 IMP RGD PMID:25561470 RGD:11561937 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,231,388...86,246,742 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO
IEA		 (PMID:21072319)
GO_REF:0000107		 RGD
Ensembl		 PMID:21072319 GO_REF:0000107 NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:196,091,646...196,168,716 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO
IEA		 (PMID:25484098)
GO_REF:0000107		 RGD
Ensembl		 PMID:25484098 GO_REF:0000107 NCBI chr 3:36,621,042...36,661,932
Ensembl chr 3:16,223,367...16,264,154 		JBrowse link
G Moap1 modulator of apoptosis 1 involved_in ISO (PMID:33783314) RGD PMID:33783314 NCBI chr 6:121,882,565...121,884,500
Ensembl chr 6:121,882,366...121,898,643
Ensembl chr17:121,882,366...121,898,643 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO
IEA		 (PMID:25578879)
GO_REF:0000107		 RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr17:86,405,080...86,576,597
Ensembl chr17:81,496,670...81,668,029 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO
IEA		 (PMID:25578879)
GO_REF:0000107		 RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr10:83,202,379...83,231,292
Ensembl chr10:82,701,098...82,734,938 		JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in ISO
IEA		 (PMID:25578879)
GO_REF:0000107		 RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr 7:63,020,004...63,035,086
Ensembl chr 7:63,020,000...63,035,078 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
IBA
IEA
ISS		 (PMID:25495476)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl		 PMID:25495476 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr13:41,908,179...41,981,611
Ensembl chr13:39,352,247...39,429,169 		JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:25495476)		 GO_Central
Ensembl
RGD		 PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr13:96,757,430...96,828,930
Ensembl chr13:96,757,460...96,829,478 		JBrowse link
G Ralb RAS like proto-oncogene B involved_in ISO
IEA		 (PMID:24056301)
GO_REF:0000107		 RGD
Ensembl		 PMID:24056301 GO_REF:0000107 NCBI chr13:33,140,834...33,176,997
Ensembl chr13:30,588,033...30,624,202 		JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 involved_in ISO
IEA		 (PMID:21068542)
GO_REF:0000107		 RGD
Ensembl		 PMID:21068542 GO_REF:0000107 NCBI chr 2:236,411,194...236,445,225
Ensembl chr 2:233,750,838...233,784,784 		JBrowse link
G Snx18 sorting nexin 18 involved_in ISO
IEA		 (PMID:29437695)
GO_REF:0000107		 RGD
Ensembl		 PMID:29437695 GO_REF:0000107 NCBI chr 2:45,232,325...45,258,345
Ensembl chr 2:45,232,325...45,258,345 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in ISO
IEA		 (PMID:32513819)
GO_REF:0000107		 RGD
Ensembl		 PMID:32513819 GO_REF:0000107 NCBI chr 5:74,683,902...74,813,013
Ensembl chr 5:74,684,015...74,792,631 		JBrowse link
G Snx4 sorting nexin 4 involved_in ISO
IEA
IBA		 (PMID:32513819), (PMID:33468622)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:32513819 PMID:33468622 GO_REF:0000033 GO_REF:0000107 NCBI chr11:80,965,965...81,023,234
Ensembl chr11:67,460,870...67,518,174 		JBrowse link
G Snx7 sorting nexin 7 involved_in ISO
IEA		 (PMID:32513819)
GO_REF:0000107		 RGD
Ensembl		 PMID:32513819 GO_REF:0000107 NCBI chr 2:205,843,164...205,927,737
Ensembl chr 2:205,842,837...205,927,763 		JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 5:84,020,604...84,031,483
Ensembl chr 5:78,999,389...79,022,018 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 IMP RGD PMID:23448468 RGD:13208863 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:45,851,710...45,877,966 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
IEA
ISS		 (PMID:31271352)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:31271352 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:14,776,293...14,782,202 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO
IEA		 (PMID:31271352)
GO_REF:0000107		 RGD
Ensembl		 PMID:31271352 GO_REF:0000107 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:94,542,946...94,579,846 		JBrowse link
positive regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 involved_in ISO
IEA
ISS		 (PMID:23708524)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
GO_Central		 PMID:23708524 GO_REF:0000024 GO_REF:0000107 NCBI chr18:57,912,760...57,914,802
Ensembl chr18:55,502,903...55,644,512 		JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 involved_in ISO (PMID:25771791) RGD PMID:25771791 NCBI chr10:81,055,467...81,069,298 JBrowse link
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO MGI:5648633 (PMID:24949970) RGD PMID:24949970 NCBI chr10:4,927,799...5,123,749
Ensembl chr10:4,928,030...5,123,578 		JBrowse link
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in ISO
IEA
IBA		 (PMID:26468287)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:26468287 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:123,412,105...123,479,315
Ensembl chr 8:123,412,112...123,479,021 		JBrowse link
G Irgm immunity-related GTPase M involved_in ISO
IEA		 (PMID:16888103)
GO_REF:0000107		 RGD
Ensembl		 PMID:16888103 GO_REF:0000107 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,233,455...33,241,578 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO
IEA		 (PMID:28195531)
GO_REF:0000107		 RGD
Ensembl		 PMID:28195531 GO_REF:0000107 NCBI chr10:45,957,146...45,968,388
Ensembl chr10:45,457,605...45,468,876 		JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO
IEA		 (PMID:23023224)
GO_REF:0000107		 RGD
Ensembl		 PMID:23023224 GO_REF:0000107 NCBI chr19:13,411,227...13,446,129
Ensembl chr19:13,405,501...13,440,384 		JBrowse link
positive regulation of lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:23708524)		 GO_Central
Ensembl
RGD		 PMID:23708524 GO_REF:0000024 GO_REF:0000107 NCBI chr18:57,912,760...57,914,802
Ensembl chr18:55,502,903...55,644,512 		JBrowse link
G Htt huntingtin involved_in ISO
IEA		 (PMID:25686248)
GO_REF:0000107		 RGD
Ensembl		 PMID:25686248 GO_REF:0000107 NCBI chr14:80,070,456...80,219,668
Ensembl chr14:75,845,836...75,995,070 		JBrowse link
G Sesn2 sestrin 2 acts_upstream_of_or_within ISO
IEA		 MGI:3587950 (PMID:22958918)
GO_REF:0000107		 RGD
Ensembl		 PMID:22958918 GO_REF:0000107 NCBI chr 5:149,986,304...150,005,255
Ensembl chr 5:144,701,530...144,721,260 		JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 acts_upstream_of_or_within ISO (PMID:25332431) RGD PMID:25332431 NCBI chr17:12,029,189...12,068,234
Ensembl chr17:11,877,249...11,916,295 		JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 acts_upstream_of_or_within ISO
IEA		 (PMID:25332431)
GO_REF:0000107		 RGD
Ensembl		 PMID:25332431 GO_REF:0000107 NCBI chr 6:112,679,623...112,762,470
Ensembl chr 6:106,950,949...107,031,542 		JBrowse link
positive regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO
IEA		 (PMID:30217973)
GO_REF:0000107		 RGD
Ensembl		 PMID:30217973 GO_REF:0000107 NCBI chr 3:98,156,626...98,345,876
Ensembl chr 3:77,700,936...77,890,221 		JBrowse link
G Atg7 autophagy related 7 IMP RGD PMID:37042059 RGD:407532700 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:147,718,752...147,925,593 		JBrowse link
G Cers1 ceramide synthase 1 involved_in ISO (PMID:22922758) RGD PMID:22922758 NCBI chr16:19,097,309...19,112,519
Ensembl chr16:19,104,466...19,112,519 		JBrowse link
G Dele1 DAP3 binding cell death enhancer 1 involved_in ISO
IEA		 (PMID:38340717)
GO_REF:0000107		 RGD
Ensembl		 PMID:38340717 GO_REF:0000107 NCBI chr18:30,085,093...30,098,105
Ensembl chr18:30,085,126...30,098,756 		JBrowse link
G Eif2ak1 eukaryotic translation initiation factor 2 alpha kinase 1 involved_in ISO
IEA
ISS		 (PMID:38340717)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:38340717 GO_REF:0000024 GO_REF:0000107 NCBI chr12:15,824,431...15,858,266
Ensembl chr12:10,705,874...10,744,573 		JBrowse link
G Fbxo7 F-box protein 7 involved_in IMP
IEA
ISO		 PMID:26310625
GO_REF:0000107
(PMID:26310625)		 Ensembl
RGD		 PMID:26310625 PMID:26310625 GO_REF:0000107, RGD:11536096 NCBI chr 7:19,696,951...19,725,180
Ensembl chr 7:17,809,231...17,837,530 		JBrowse link
G Gdf1 growth differentiation factor 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr16:19,131,271...19,146,480
Ensembl chr16:19,097,314...19,112,519 		JBrowse link
G Htt huntingtin involved_in IEA
ISO		 GO_REF:0000107
(PMID:25686248)		 Ensembl
RGD		 PMID:25686248 GO_REF:0000107 NCBI chr14:80,070,456...80,219,668
Ensembl chr14:75,845,836...75,995,070 		JBrowse link
G Irgm immunity-related GTPase M involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:33510463)
(PMID:21102437)
(PMID:32939830)		 UniProt
Ensembl
RGD		 PMID:21102437 PMID:32939830 PMID:33510463 GO_REF:0000024 GO_REF:0000107 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,233,455...33,241,578 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 involved_in ISO (PMID:31919280) RGD PMID:31919280 NCBI chr19:34,555,832...34,596,281
Ensembl chr19:18,382,439...18,417,177 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IMP
IEA
ISO		 GO_REF:0000107
(PMID:26310625)		 Ensembl
RGD		 PMID:26310625 PMID:28608965 GO_REF:0000107, RGD:13432560 NCBI chr 1:51,236,410...52,430,242
Ensembl chr 1:48,690,556...49,882,555 		JBrowse link
G Slc25a4 solute carrier family 25 member 4 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:31618756)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:31618756 GO_REF:0000024 GO_REF:0000107 NCBI chr16:52,805,521...52,809,316
Ensembl chr16:46,072,939...46,076,733 		JBrowse link
G Slc25a5 solute carrier family 25 member 5 involved_in ISS
ISO		 GO_REF:0000024
(PMID:31618756)		 UniProt
RGD		 PMID:31618756 GO_REF:0000024 NCBI chr  X:120,897,616...120,900,683
Ensembl chr  X:116,031,803...116,034,967 		JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in IMP PMID:29934347 UniProt PMID:29934347 RGD:405650300 NCBI chr10:15,355,278...15,357,559
Ensembl chr10:14,850,765...14,853,046 		JBrowse link
G Ube2a ubiquitin-conjugating enzyme E2A involved_in ISO
IEA		 (PMID:23685073)
GO_REF:0000107		 RGD
Ensembl		 PMID:23685073 GO_REF:0000107 NCBI chr  X:116,114,339...116,125,076
Ensembl chr  X:116,113,875...116,125,070 		JBrowse link
G Vps13d vacuolar protein sorting 13 homolog D involved_in ISO
IEA		 (PMID:29307555)
GO_REF:0000107		 RGD
Ensembl		 PMID:29307555 GO_REF:0000107 NCBI chr 5:162,113,732...162,339,121
Ensembl chr 5:156,830,512...157,055,891 		JBrowse link
positive regulation of reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 involved_in ISO
IEA
ISS		 (PMID:32851973), (PMID:36543799)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:32851973 PMID:36543799 GO_REF:0000024 GO_REF:0000107 NCBI chr10:82,390,845...82,402,814
Ensembl chr10:81,894,393...81,903,590 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO
IEA		 (PMID:36543799)
GO_REF:0000107		 RGD
Ensembl		 PMID:36543799 GO_REF:0000107 NCBI chr 3:138,315,006...138,336,691
Ensembl chr 3:117,861,653...117,882,680 		JBrowse link
G Ufl1 Ufm1-specific ligase 1 involved_in ISO
IEA
ISS		 (PMID:36543799)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:36543799 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:43,759,271...43,791,682
Ensembl chr 5:38,962,171...38,995,199 		JBrowse link
positive regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5if1 ATP synthase inhibitory factor subunit 1 involved_in ISO (PMID:24005319) RGD PMID:24005319 NCBI chr 5:150,022,960...150,026,677
Ensembl chr 5:144,738,950...144,742,668 		JBrowse link
G Cdc37 cell division cycle 37, HSP90 cochaperone involved_in ISO (PMID:21855797) RGD PMID:21855797 NCBI chr 8:27,954,292...27,966,935
Ensembl chr 8:19,671,938...19,690,809 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO
IEA		 (PMID:23707074)
GO_REF:0000107		 RGD
Ensembl		 PMID:23707074 GO_REF:0000107 NCBI chr 2:176,902,141...176,916,015
Ensembl chr 2:174,609,403...174,618,263 		JBrowse link
G Hdac6 histone deacetylase 6 involved_in ISO
IEA		 UniProtKB:Q9JK66 (PMID:20457763)
GO_REF:0000107		 RGD
Ensembl		 PMID:20457763 GO_REF:0000107 NCBI chr  X:17,222,538...17,244,373
Ensembl chr  X:14,551,044...14,572,441 		JBrowse link
G Hk2 hexokinase 2 involved_in ISO
IEA		 (PMID:23962723)
GO_REF:0000107		 RGD
Ensembl		 PMID:23962723 GO_REF:0000107 NCBI chr 4:116,792,258...116,841,275
Ensembl chr 4:115,234,509...115,283,530 		JBrowse link
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in ISO (PMID:30217973) RGD PMID:30217973 NCBI chr  X:20,873,795...21,001,378
Ensembl chr  X:20,873,795...21,001,262 		JBrowse link
G Mul1 mitochondrial E3 ubiquitin protein ligase 1 involved_in ISO
IEA		 (PMID:24709290)
GO_REF:0000107		 RGD
Ensembl		 PMID:24709290 GO_REF:0000107 NCBI chr 5:155,936,112...155,945,163
Ensembl chr 5:150,652,812...150,661,863 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO
IEA		 (PMID:20871098)
GO_REF:0000107		 RGD
Ensembl		 PMID:20871098 GO_REF:0000107 NCBI chr 5:155,813,838...155,825,950
Ensembl chr 5:150,530,523...150,542,635 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO
IEA		 (PMID:20457763), (PMID:20871098), (PMID:23212910)
GO_REF:0000107		 RGD
Ensembl		 PMID:20457763 PMID:20871098 PMID:23212910 GO_REF:0000107 NCBI chr 1:51,236,410...52,430,242
Ensembl chr 1:48,690,556...49,882,555 		JBrowse link
G Tomm7 translocase of outer mitochondrial membrane 7 involved_in ISO (PMID:24270810) RGD PMID:24270810 NCBI chr 4:12,197,503...12,204,344
Ensembl chr 4:11,305,110...11,311,962 		JBrowse link
G Vdac1 voltage-dependent anion channel 1 involved_in ISO
IEA		 (PMID:32047033)
GO_REF:0000107		 RGD
Ensembl		 PMID:32047033 GO_REF:0000107 NCBI chr10:37,029,377...37,060,542
Ensembl chr10:36,532,244...36,559,640 		JBrowse link
positive regulation of xenophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irgm immunity-related GTPase M involved_in ISO (PMID:25891078) RGD PMID:25891078 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,233,455...33,241,578 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO
IEA		 (PMID:23245322)
GO_REF:0000107		 RGD
Ensembl		 PMID:23245322 GO_REF:0000107 NCBI chr 3:36,621,042...36,661,932
Ensembl chr 3:16,223,367...16,264,154 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO MGI:1346858 (PMID:22033934) RGD PMID:22033934 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:181,366,637...181,372,863 		JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 acts_upstream_of_or_within ISO
IEA		 MGI:2674231 (PMID:22033934)
GO_REF:0000107		 RGD
Ensembl		 PMID:22033934 GO_REF:0000107 NCBI chr 4:85,391,142...85,442,281
Ensembl chr 4:84,060,880...84,111,404 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 acts_upstream_of_or_within ISO MGI:3529594 (PMID:22033934) RGD PMID:22033934 NCBI chr19:34,555,832...34,596,281
Ensembl chr19:18,382,439...18,417,177 		JBrowse link
G Optn optineurin involved_in ISO
IEA		 (PMID:21617041)
GO_REF:0000107		 RGD
Ensembl		 PMID:21617041 GO_REF:0000107 NCBI chr17:78,118,847...78,169,543
Ensembl chr17:73,209,575...73,260,251 		JBrowse link
G Ripk2 receptor-interacting serine-threonine kinase 2 acts_upstream_of_or_within ISO
IEA		 MGI:2660793 (PMID:22033934)
GO_REF:0000107		 RGD
Ensembl		 PMID:22033934 GO_REF:0000107 NCBI chr 5:34,428,573...34,459,808
Ensembl chr 5:29,631,570...29,662,657 		JBrowse link
G Rnf31 ring finger protein 31 involved_in ISO
IEA		 (PMID:28481331)
GO_REF:0000107		 RGD
Ensembl		 PMID:28481331 GO_REF:0000107 NCBI chr15:33,053,450...33,065,285
Ensembl chr15:29,083,631...29,101,915 		JBrowse link
G Tbk1 TANK-binding kinase 1 involved_in ISO
IEA		 (PMID:21617041)
GO_REF:0000107		 RGD
Ensembl		 PMID:21617041 GO_REF:0000107 NCBI chr 7:58,963,319...58,996,357
Ensembl chr 7:57,077,830...57,110,892 		JBrowse link
G Tlr2 toll-like receptor 2 acts_upstream_of_or_within ISO MGI:2674036 (PMID:22033934) RGD PMID:22033934 NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:169,197,419...169,206,630 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      process utilizing autophagic mechanism 558
        autophagy 558
          macroautophagy 335
            positive regulation of macroautophagy 99
              positive regulation of aggrephagy 6
              positive regulation of autophagosome assembly 21
              positive regulation of autophagosome maturation 7
              positive regulation of lipophagy 5
              positive regulation of mitophagy + 26
              positive regulation of reticulophagy 3
              positive regulation of xenophagy 10
Path 2
Term Annotations click to browse term
  biological_process 20558
    biological regulation 13833
      regulation of biological process 13394
        positive regulation of biological process 6766
          positive regulation of cellular process 6424
            positive regulation of metabolic process 3819
              positive regulation of catabolic process 633
                positive regulation of autophagy 169
                  positive regulation of macroautophagy 99
                    positive regulation of aggrephagy 6
                    positive regulation of autophagosome assembly 21
                    positive regulation of autophagosome maturation 7
                    positive regulation of lipophagy 5
                    positive regulation of mitophagy + 26
                    positive regulation of reticulophagy 3
                    positive regulation of xenophagy 10
paths to the root