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ONTOLOGY REPORT - ANNOTATIONS


Term:macroautophagy
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Accession:GO:0016236 term browser browse the term
Definition:The autophagic process that proceeds via the formation of an autophagosome.
Synonyms:narrow_synonym: selective autophagy
 broad_synonym: autophagy
 alt_id: GO:0034262
 xref: Reactome:R-HSA-1632852 "Macroautophagy";   Reactome:R-HSA-5205685 "PINK1-PRKN Mediated Mitophagy";   Reactome:R-HSA-8934903 "Receptor Mediated Mitophagy"



show annotations for term's descendants           Sort by:
macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in ISO (PMID:25484072)
(PMID:11266458)
RGD PMID:11266458 PMID:25484072 NCBI chr18:41,638,841...41,649,311
Ensembl chr18:39,452,191...39,462,418
JBrowse link
G Atg14 autophagy related 14 involved_in ISO (PMID:23878393) RGD PMID:23878393 NCBI chr15:23,275,457...23,306,817
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Atg16l1 autophagy related 16-like 1 involved_in ISO (PMID:29317426), (PMID:33586810)
(PMID:11266458)
RGD PMID:11266458 PMID:29317426 PMID:33586810 NCBI chr 9:95,869,839...95,905,354
Ensembl chr 9:88,422,038...88,457,529
JBrowse link
G Atg16l2 autophagy related 16-like 2 involved_in ISO (PMID:11266458) RGD PMID:11266458 NCBI chr 1:165,100,946...165,123,307
Ensembl chr 1:155,684,564...155,703,420
JBrowse link
G Atg3 autophagy related 3 acts_upstream_of_or_within ISO (PMID:24035364) RGD PMID:24035364 NCBI chr11:69,130,948...69,159,280
Ensembl chr11:55,624,917...55,653,224
JBrowse link
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:25484072)
(PMID:11266458)
GO_REF:0000117
MGI:3612279 (PMID:20453062), (PMID:22496425), (PMID:23704209), (PMID:24035364)
RGD
UniProt
PMID:11266458 PMID:20453062 PMID:22496425 PMID:23704209 PMID:24035364 More... GO_REF:0000117 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within
ISO (PMID:22354037)
MGI:1934631|MGI:3587769 (PMID:22496425), (PMID:23704209), (PMID:24035364)
RGD PMID:22354037 PMID:22496425 PMID:23704209 PMID:24035364 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G Becn1 beclin 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:23332761)
MGI:1097712|MGI:2683833 (PMID:14657337), (PMID:17468177)
UniProt
RGD
PMID:14657337 PMID:17468177 PMID:23332761 GO_REF:0000024 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin acts_upstream_of_or_within ISO MGI:2388888 (PMID:16714284) RGD PMID:16714284 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
JBrowse link
G Ei24 EI24, autophagy associated transmembrane protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:44,683,138...44,699,502
Ensembl chr 8:36,494,289...36,510,571
JBrowse link
G ENSRNOG00000067694 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr20:828,448...830,087 JBrowse link
G ENSRNOG00000067909 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:64,012,849...64,013,910 JBrowse link
G Hdac10 histone deacetylase 10 involved_in ISO
IEA
ISS
(PMID:23801752)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:23801752 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:122,078,768...122,084,457
Ensembl chr 7:120,199,129...120,204,228
JBrowse link
G Hmox1 heme oxygenase 1 involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
MGI:2429784 (PMID:20705711)
Ensembl
RGD
PMID:20705711 GO_REF:0000107 NCBI chr19:13,452,365...13,479,823
Ensembl chr19:13,467,244...13,474,079
JBrowse link
G Ilrun inflammation and lipid regulator with UBA-like and NBR1-like domains involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:5,811,721...5,878,082
Ensembl chr20:5,809,936...5,876,012
JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISO (PMID:28223137) RGD PMID:28223137 NCBI chr 3:164,243,204...164,244,850
Ensembl chr 3:143,783,024...143,784,670
JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISO (PMID:28223137) RGD PMID:28223137 NCBI chr19:66,571,631...66,582,270
Ensembl chr19:49,665,791...49,677,690
Ensembl chr16:49,665,791...49,677,690
JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
(PMID:16714284)
Ensembl
RGD
PMID:16714284 GO_REF:0000107 NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:158,884,804...158,994,311
JBrowse link
G Myo5a myosin VA IMP RGD PMID:29217155 RGD:42721980 NCBI chr 8:84,692,524...84,860,564
Ensembl chr 8:75,812,412...75,975,918
JBrowse link
G Nbr1 NBR1, autophagy cargo receptor involved_in ISO
IBA
IEA
ISS
(PMID:19250911)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
UniProt
PMID:19250911 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:86,978,024...87,006,664
Ensembl chr10:86,478,290...86,506,412
JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 acts_upstream_of ISO MGI:1857409|MGI:1891828 (PMID:17468177) RGD PMID:17468177 NCBI chr18:3,654,237...3,699,853
Ensembl chr18:3,379,482...3,425,049
JBrowse link
G Pdcd6ip programmed cell death 6 interacting protein involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:25686249)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:25686249 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:122,469,223...122,524,993
Ensembl chr 8:113,590,998...113,646,773
JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha acts_upstream_of_or_within ISO MGI:2685054 (PMID:24098492) RGD PMID:24098492 NCBI chr 1:170,577,942...170,684,353
Ensembl chr 1:170,577,942...170,683,472
JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta acts_upstream_of_or_within ISO MGI:1203729 (PMID:24098492) RGD PMID:24098492 NCBI chr13:47,046,866...47,107,733
Ensembl chr13:44,495,050...44,555,612
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:23332761), (PMID:25578879)
UniProt
RGD
PMID:23332761 PMID:25578879 GO_REF:0000024 NCBI chr18:22,119,677...22,203,546
Ensembl chr18:21,845,295...21,929,048
JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:115,146,660...115,195,326
Ensembl chr 8:106,267,954...106,316,584
JBrowse link
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase acts_upstream_of ISO (PMID:17476689) RGD PMID:17476689 NCBI chr  X:17,289,509...17,294,778
Ensembl chr  X:14,617,582...14,622,851
JBrowse link
G Plaa phospholipase A2, activating protein involved_in ISS
ISO
GO_REF:0000024
(PMID:27753622)
UniProt
RGD
PMID:27753622 GO_REF:0000024 NCBI chr 5:114,544,327...114,576,023
Ensembl chr 5:109,428,265...109,460,282
JBrowse link
G Rab2a RAB2A, member RAS oncogene family involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:28063257)
(PMID:28483915)
Ensembl
UniProt
RGD
PMID:28063257 PMID:28483915 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:21,676,017...21,740,035
Ensembl chr 5:21,676,129...21,739,899
JBrowse link
G Rab2b RAB2B, member RAS oncogene family involved_in ISO (PMID:28063257) RGD PMID:28063257 NCBI chr15:27,441,860...27,462,479
Ensembl chr15:24,968,803...24,989,113
JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:96,757,430...96,828,930
Ensembl chr13:96,757,460...96,829,478
JBrowse link
G Snf8 SNF8 subunit of ESCRT-II involved_in ISS
ISO
GO_REF:0000024
(PMID:38423010)
UniProt
RGD
PMID:38423010 GO_REF:0000024 NCBI chr10:80,984,337...80,996,724
Ensembl chr10:80,984,363...80,996,734
JBrowse link
G Sqstm1 sequestosome 1 involved_in ISO
ISS
(PMID:20168092)
GO_REF:0000024
RGD
UniProt
PMID:20168092 GO_REF:0000024 NCBI chr10:35,026,598...35,037,750
Ensembl chr10:34,525,519...34,536,673
JBrowse link
G Tbc1d5 TBC1 domain family, member 5 involved_in ISO (PMID:24603492) RGD PMID:24603492 NCBI chr 9:3,740,032...4,256,971
Ensembl chr 9:3,513,623...4,016,913
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO MGI:1856973 (PMID:23704209) RGD PMID:23704209 NCBI chr 1:210,556,270...210,568,021
Ensembl chr 1:201,127,034...201,138,742
JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISO (PMID:25484072) RGD PMID:25484072 NCBI chr12:10,391,587...10,420,462
Ensembl chr12:10,391,696...10,419,611
JBrowse link
G Tmem74 transmembrane protein 74 involved_in ISO (PMID:18294959) RGD PMID:18294959 NCBI chr 7:76,814,000...76,822,633
Ensembl chr 7:74,931,694...74,937,934
JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 acts_upstream_of_or_within ISO MGI:1931135|MGI:5637673 (PMID:24713655) RGD PMID:24713655 NCBI chr 3:164,341,618...164,350,270
Ensembl chr 3:143,882,021...143,890,097
JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO (PMID:20529957) RGD PMID:20529957 NCBI chr17:6,438,456...6,482,498
Ensembl chr17:6,439,002...6,477,090
JBrowse link
G Ubxn6 UBX domain protein 6 involved_in ISO (PMID:27753622) RGD PMID:27753622 NCBI chr 9:900,883...906,047
Ensembl chr 9:900,884...906,124
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in
acts_upstream_of_or_within
ISO (PMID:22354037)
UniProtKB:O70405 (PMID:21855797)
(PMID:21258367)
RGD PMID:21258367 PMID:21855797 PMID:22354037 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Vcp valosin-containing protein involved_in ISS
ISO
GO_REF:0000024
(PMID:27753622)
UniProt
RGD
PMID:27753622 GO_REF:0000024 NCBI chr 5:62,005,984...62,025,387
Ensembl chr 5:57,210,168...57,229,571
JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:50,758,732...50,923,129
Ensembl chr17:46,063,124...46,227,791
JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:264,361,538...264,667,171
Ensembl chr 1:254,356,429...254,661,852
JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:97,957,700...97,976,491
Ensembl chr 6:97,961,346...97,976,465
JBrowse link
G Yod1 YOD1 deubiquitinase involved_in ISS
ISO
GO_REF:0000024
(PMID:27753622)
UniProt
RGD
PMID:27753622 GO_REF:0000024 NCBI chr13:44,727,319...44,733,933
Ensembl chr13:42,174,820...42,177,205
JBrowse link
G Zfyve1 zinc finger FYVE-type containing 1 involved_in ISO (PMID:25578879) RGD PMID:25578879 NCBI chr 6:108,916,062...108,965,231
Ensembl chr 6:103,184,938...103,234,039
JBrowse link
aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07040864.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Atg4a autophagy related 4A, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:109,453,712...109,553,758
Ensembl chr  X:104,665,345...104,765,268
JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103
JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:118,977,594...119,050,894
Ensembl chr 5:113,867,092...113,934,830
JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:28,083,902...28,093,491
Ensembl chr 8:19,807,766...19,817,321
JBrowse link
G Atg5 autophagy related 5 involved_in IEA
IBA
ISO
GO_REF:0000107
GO_REF:0000033
(PMID:22982048)
Ensembl
GO_Central
RGD
PMID:22982048 GO_REF:0000033 GO_REF:0000107 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Sqstm1 sequestosome 1 involved_in ISS
ISO
IBA
GO_REF:0000024
(PMID:25723488), (PMID:33397898)
GO_REF:0000033
UniProtKB:Q562E7 (PMID:17580304), (PMID:22017874), (PMID:28404643), (PMID:29343546), (PMID:29507397), (PMID:31857589), (PMID:37306101), (PMID:37802024)
UniProt
RGD
GO_Central
PMID:17580304 PMID:22017874 PMID:25723488 PMID:28404643 PMID:29343546 More... GO_REF:0000024 GO_REF:0000033 NCBI chr10:35,026,598...35,037,750
Ensembl chr10:34,525,519...34,536,673
JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:21143716)
Ensembl
UniProt
RGD
PMID:21143716 GO_REF:0000024 GO_REF:0000107 NCBI chr17:6,438,456...6,482,498
Ensembl chr17:6,439,002...6,477,090
JBrowse link
G Wdfy3 WD repeat and FYVE domain containing 3 involved_in ISO
IBA
(PMID:20168092), (PMID:20417604)
GO_REF:0000033
RGD
GO_Central
PMID:20168092 PMID:20417604 GO_REF:0000033 NCBI chr14:7,578,245...7,810,491
Ensembl chr14:7,606,628...7,810,482
JBrowse link
G Wdr81 WD repeat domain 81 involved_in ISS
IBA
IEA
ISO
GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:28404643)
UniProt
GO_Central
Ensembl
RGD
PMID:28404643 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:60,780,268...60,793,671
Ensembl chr10:60,281,972...60,295,296
JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07040864.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO
IBA
(PMID:20921139), (PMID:25215947)
GO_REF:0000033
(PMID:23524951)
RGD
GO_Central
PMID:20921139 PMID:23524951 PMID:25215947 GO_REF:0000033 NCBI chr 3:98,156,626...98,345,876
Ensembl chr 3:77,700,936...77,890,221
JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in ISO
ISS
(PMID:29180427)
GO_REF:0000024
RGD
UniProt
PMID:29180427 GO_REF:0000024 NCBI chr12:17,049,766...17,055,954
Ensembl chr12:17,049,777...17,058,026
JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within ISO MGI:4460281 (PMID:30930081) RGD PMID:30930081 NCBI chr12:12,093,834...12,109,043
Ensembl chr12:12,093,834...12,108,511
JBrowse link
G Atg10 autophagy related 10 involved_in ISO
IBA
(PMID:16963840)
GO_REF:0000033
RGD
GO_Central
PMID:16963840 GO_REF:0000033 NCBI chr 2:22,109,304...22,398,313
Ensembl chr 2:22,108,426...22,398,233
JBrowse link
G Atg101 autophagy related 101 involved_in ISO
IBA
IEA
(PMID:19225151), (PMID:19597335)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:19225151 PMID:19597335 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:132,398,477...132,407,643
Ensembl chr 7:132,398,483...132,407,633
JBrowse link
G Atg12 autophagy related 12 involved_in IEA
IBA
ISO
GO_REF:0000002
GO_REF:0000033
(PMID:11266458)
InterPro
GO_Central
RGD
PMID:11266458 GO_REF:0000002 GO_REF:0000033 NCBI chr18:41,638,841...41,649,311
Ensembl chr18:39,452,191...39,462,418
JBrowse link
G Atg13 autophagy related 13 acts_upstream_of_or_within
involved_in
ISO (PMID:19211835)
(PMID:19225151), (PMID:19258318)
(PMID:19211835), (PMID:19225151)
RGD PMID:19211835 PMID:19225151 PMID:19258318 NCBI chr 3:98,102,831...98,136,741
Ensembl chr 3:77,645,790...77,681,043
JBrowse link
G Atg14 autophagy related 14 involved_in ISO
IBA
(PMID:19270696), (PMID:20713597)
GO_REF:0000033
RGD
GO_Central
PMID:19270696 PMID:20713597 GO_REF:0000033 NCBI chr15:23,275,457...23,306,817
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Atg16l1 autophagy related 16-like 1 involved_in ISO
IBA
(PMID:30778222)
(PMID:11266458)
GO_REF:0000033
RGD
GO_Central
PMID:11266458 PMID:30778222 GO_REF:0000033 NCBI chr 9:95,869,839...95,905,354
Ensembl chr 9:88,422,038...88,457,529
JBrowse link
G Atg16l2 autophagy related 16-like 2 NOT|involved_in ISO (PMID:22082872)
(PMID:11266458)
RGD PMID:11266458 PMID:22082872 NCBI chr 1:165,100,946...165,123,307
Ensembl chr 1:155,684,564...155,703,420
JBrowse link
G Atg2a autophagy related 2A involved_in ISO
IBA
(PMID:28561066)
GO_REF:0000033
RGD
GO_Central
PMID:28561066 GO_REF:0000033 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:130,286,979...130,357,109
Ensembl chr 6:124,525,523...124,592,015
JBrowse link
G Atg3 autophagy related 3 involved_in
acts_upstream_of_or_within
ISS
ISO
IBA
IEA
GO_REF:0000024
(PMID:20723759), (PMID:24747438)
(PMID:21220506)
GO_REF:0000033
GO_REF:0000107
(PMID:33446636)
UniProt
RGD
GO_Central
Ensembl
PMID:20723759 PMID:21220506 PMID:24747438 PMID:33446636 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr11:69,130,948...69,159,280
Ensembl chr11:55,624,917...55,653,224
JBrowse link
G Atg4a autophagy related 4A, cysteine peptidase involved_in ISO
IBA
(PMID:21177865)
GO_REF:0000033
RGD
GO_Central
PMID:21177865 GO_REF:0000033 NCBI chr  X:109,453,712...109,553,758
Ensembl chr  X:104,665,345...104,765,268
JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IBA
(PMID:21177865)
(PMID:25578879)
GO_REF:0000033
RGD
GO_Central
PMID:21177865 PMID:25578879 GO_REF:0000033 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103
JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in ISO
IBA
(PMID:21177865)
GO_REF:0000033
RGD
GO_Central
PMID:21177865 GO_REF:0000033 NCBI chr 5:118,977,594...119,050,894
Ensembl chr 5:113,867,092...113,934,830
JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISO
IBA
(PMID:21177865)
GO_REF:0000033
RGD
GO_Central
PMID:21177865 GO_REF:0000033 NCBI chr 8:28,083,902...28,093,491
Ensembl chr 8:19,807,766...19,817,321
JBrowse link
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within
IMP
IBA
ISO
IEA
GO_REF:0000033
(PMID:11266458)
(PMID:23704209)
GO_REF:0000107
(PMID:23202584)
GO_Central
RGD
Ensembl
PMID:11266458 PMID:23202584 PMID:23704209 PMID:16420522 GO_REF:0000033 GO_REF:0000107, RGD:1643189 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within
ISO
IBA
IEA
(PMID:22170151)
GO_REF:0000033
(PMID:20080761)
(PMID:23704209)
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:20080761 PMID:22170151 PMID:23704209 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G Atg9a autophagy related 9A acts_upstream_of_or_within
involved_in
ISO
IEA
ISS
(PMID:15755735), (PMID:22456507)
GO_REF:0000107
MGI:4417824 (PMID:22456507), (PMID:23402761)
GO_REF:0000024
(PMID:29180427), (PMID:29437695), (PMID:32513819), (PMID:33468622)
RGD
Ensembl
UniProt
PMID:15755735 PMID:22456507 PMID:23402761 PMID:29180427 PMID:29437695 More... GO_REF:0000024 GO_REF:0000107 NCBI chr 9:84,126,071...84,136,723
Ensembl chr 9:76,677,404...76,687,986
JBrowse link
G Atg9b autophagy related 9B acts_upstream_of_or_within ISO (PMID:15755735) RGD PMID:15755735 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651
JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:28890335)
UniProt
GO_Central
RGD
PMID:28890335 GO_REF:0000024 GO_REF:0000033 NCBI chr12:39,733,519...39,782,942
Ensembl chr12:34,072,683...34,122,101
JBrowse link
G Becn1 beclin 1 involved_in IMP
ISO
IBA
ISS
(PMID:23332761)
GO_REF:0000033
(PMID:25891078)
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:23332761 PMID:25891078 PMID:16420522 GO_REF:0000024 GO_REF:0000033, RGD:1643189 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Becn2 beclin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:87,842,980...87,892,410
Ensembl chr13:87,844,531...87,845,787
JBrowse link
G Ctsd cathepsin D acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15452145)
GO_REF:0000107
RGD
Ensembl
PMID:15452145 GO_REF:0000107 NCBI chr 1:206,956,945...206,968,821
Ensembl chr 1:197,527,467...197,539,488
JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO
IBA
(PMID:21072319)
GO_REF:0000033
RGD
GO_Central
PMID:21072319 GO_REF:0000033 NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:196,091,646...196,168,716
JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in ISO
IBA
(PMID:23182941)
GO_REF:0000033
RGD
GO_Central
PMID:23182941 GO_REF:0000033 NCBI chr10:58,292,584...58,293,850
Ensembl chr10:57,793,685...57,796,217
JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2182627 (PMID:24430976)
Ensembl
RGD
PMID:24430976 GO_REF:0000107 NCBI chr 1:7,547,369...7,673,449
Ensembl chr 1:5,727,066...5,920,555
JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:55,213,465...55,216,787
Ensembl chr10:54,714,198...54,717,765
JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:164,666,332...164,675,474
Ensembl chr 4:162,980,249...162,989,450
JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:56,819,826...56,830,662
Ensembl chr19:39,910,534...39,924,628
JBrowse link
G Gabarapl3 GABA type A receptor associated protein like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:89,246,175...89,247,132
Ensembl chr 8:89,246,195...89,247,139
JBrowse link
G Gabarapl4 gamma-aminobutyric acid receptor associated protein like 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:55,052,756...55,053,109
Ensembl chr19:55,052,756...55,053,109
JBrowse link
G Ifgga2l1 interferon-gamma-inducible GTPase 2 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:56,031,907...56,040,627
Ensembl chr18:53,748,631...53,772,834
JBrowse link
G Ifgga2l2 interferon-gamma-inducible GTPase 2 like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:56,141,281...56,160,578
Ensembl chr18:53,870,795...53,892,024
JBrowse link
G Ifgga4l interferon-gamma-inducible GTPase 4 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:56,108,872...56,125,302
Ensembl chr18:53,851,449...53,852,696
JBrowse link
G Ifi47 interferon gamma inducible protein 47 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:33,798,744...33,806,374
Ensembl chr10:33,285,450...33,306,216
JBrowse link
G Igtp interferon gamma induced GTPase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:42,875,047...42,882,866
Ensembl chr10:42,357,400...42,408,247
JBrowse link
G Irgm immunity-related GTPase M involved_in ISO
IBA
(PMID:16888103)
GO_REF:0000033
RGD
GO_Central
PMID:16888103 GO_REF:0000033 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,233,455...33,241,578
JBrowse link
G LOC134483037 interferon-inducible GTPase 1-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:55,993,009...55,995,850 JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISO
IBA
IDA
(PMID:24290141)
GO_REF:0000033
PMID:11060023
RGD
GO_Central
PMID:24290141 PMID:11060023 GO_REF:0000033, RGD:8554284 NCBI chr 3:164,243,204...164,244,850
Ensembl chr 3:143,783,024...143,784,670
JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISO
IBA
(PMID:37943659)
GO_REF:0000033
RGD
GO_Central
PMID:37943659 GO_REF:0000033 NCBI chr19:66,571,631...66,582,270
Ensembl chr19:49,665,791...49,677,690
Ensembl chr16:49,665,791...49,677,690
JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of ISO MGI:2450997 (PMID:23695157) RGD PMID:23695157 NCBI chr 6:6,234,917...6,252,874
Ensembl chr 6:488,969...506,860
JBrowse link
G Nsfl1c NSFL1 cofactor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:139,978,306...140,002,876
Ensembl chr 3:139,978,301...140,002,870
JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 6:137,918,040...137,977,767
Ensembl chr 6:132,096,901...132,154,583
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 acts_upstream_of_or_within
involved_in
IMP
ISO
IBA
(PMID:24098492)
GO_REF:0000033
(PMID:33637724)
RGD
GO_Central
PMID:24098492 PMID:33637724 PMID:12453151 GO_REF:0000033, RGD:2303129 NCBI chr18:22,119,677...22,203,546
Ensembl chr18:21,845,295...21,929,048
JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO MGI:2149116 (PMID:15452145) RGD PMID:15452145 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650
JBrowse link
G Rab19 RAB19, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:68,157,159...68,166,889
Ensembl chr 4:68,156,881...68,166,886
JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO
IBA
ISS
(PMID:22939626)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:22939626 GO_REF:0000024 GO_REF:0000033 NCBI chr14:98,623,582...98,648,766
Ensembl chr14:94,415,275...94,448,248
JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:211,835,133...211,843,408
Ensembl chr 1:202,405,759...202,413,868
Ensembl chr  X:202,405,759...202,413,868
JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO
IBA
(PMID:22452336)
GO_REF:0000033
RGD
GO_Central
PMID:22452336 GO_REF:0000033 NCBI chr 9:43,440,047...43,463,327
Ensembl chr 9:35,944,085...35,966,927
JBrowse link
G Rab33a RAB33A, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:132,572,133...132,584,255
Ensembl chr  X:127,694,964...127,706,378
JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in IBA
ISO
GO_REF:0000033
(PMID:18448665)
GO_Central
RGD
PMID:18448665 GO_REF:0000033 NCBI chr 2:137,678,953...137,689,581
Ensembl chr 2:135,528,116...135,538,719
JBrowse link
G Rab43 RAB43, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:121,806,992...121,826,694
Ensembl chr 4:120,249,879...120,269,174
JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:19956673) RGD PMID:19956673 NCBI chr 4:122,019,281...122,068,067
Ensembl chr 4:120,461,963...120,506,889
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in ISO
IBA
(PMID:19225151), (PMID:28890335)
(PMID:19225151), (PMID:19258318)
GO_REF:0000033
(PMID:23392225)
RGD
GO_Central
PMID:19225151 PMID:19258318 PMID:23392225 PMID:28890335 GO_REF:0000033 NCBI chr 5:17,948,522...18,012,434
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G RGD1309362 similar to interferon-inducible GTPase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:55,943,741...55,969,375 JBrowse link
G RGD1559575 similar to novel protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:33,752,208...33,777,536
Ensembl chr10:33,252,134...33,276,225
JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in ISO
IBA
(PMID:26416964)
GO_REF:0000033
RGD
GO_Central
PMID:26416964 GO_REF:0000033 NCBI chr 9:75,702,937...75,727,719
Ensembl chr 9:75,703,750...75,723,525
JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in ISS
ISO
IBA
IEA
GO_REF:0000024
(PMID:30568238)
GO_REF:0000033
(PMID:30568238), (PMID:30842662), (PMID:37535724)
GO_REF:0000107
UniProt
RGD
GO_Central
Ensembl
PMID:30568238 PMID:30842662 PMID:37535724 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr18:27,606,196...27,612,544
Ensembl chr18:27,332,119...27,338,335
JBrowse link
G Stx12 syntaxin 12 involved_in ISO
IBA
IEA
(PMID:24095276)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:24095276 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:150,347,554...150,376,426
Ensembl chr 5:145,063,587...145,092,377
JBrowse link
G Synpo2 synaptopodin 2 involved_in IMP PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chr 2:211,217,099...211,371,267
Ensembl chr 2:211,216,783...211,371,267
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO (PMID:23908015) RGD PMID:23908015 NCBI chr 1:210,556,270...210,568,021
Ensembl chr 1:201,127,034...201,138,742
JBrowse link
G Tmem41b transmembrane protein 41B involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:30093494), (PMID:30126924), (PMID:30933966)
UniProt
GO_Central
RGD
PMID:30093494 PMID:30126924 PMID:30933966 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:173,447,362...173,461,760
Ensembl chr 1:164,012,592...164,026,933
JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:29,051,267...29,069,486
Ensembl chr 5:24,260,568...24,267,968
JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in ISO
IBA
IEA
ISS
(PMID:19056683)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
UniProt
PMID:19056683 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:164,341,618...164,350,270
Ensembl chr 3:143,882,021...143,890,097
JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in ISO
IEA
(PMID:23524951)
GO_REF:0000107
RGD
Ensembl
PMID:23524951 GO_REF:0000107 NCBI chr 3:108,418,537...108,443,330
Ensembl chr 3:87,963,514...87,983,507
JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 5:84,020,604...84,031,483
Ensembl chr 5:78,999,389...79,022,018
JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO
IBA
IEA
(PMID:20529957)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:20529957 GO_REF:0000033 GO_REF:0000107 NCBI chr17:6,438,456...6,482,498
Ensembl chr17:6,439,002...6,477,090
JBrowse link
G Ubqln2 ubiquilin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:21,228,809...21,232,228
Ensembl chr  X:17,853,114...17,856,505
JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:27,884,364...27,912,767
Ensembl chr 6:27,884,680...27,912,649
Ensembl chr20:27,884,680...27,912,649
JBrowse link
G Ubxn2b UBX domain protein 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:19,303,634...19,333,181
Ensembl chr 5:19,303,682...19,326,849
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO
IBA
(PMID:19225151), (PMID:28890335)
GO_REF:0000033
(PMID:19225151), (PMID:19258318)
RGD
GO_Central
PMID:19225151 PMID:19258318 PMID:28890335 GO_REF:0000033 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:46,951,038...47,029,844
Ensembl chr10:46,454,030...46,530,407
JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:66,888,820...66,895,380
Ensembl chr 8:57,992,723...57,999,467
JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISO
IBA
IEA
ISS
(PMID:28890335), (PMID:30093494), (PMID:30933966)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
UniProt
PMID:28890335 PMID:30093494 PMID:30933966 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:71,903,223...72,002,337
Ensembl chr10:71,405,452...71,505,007
JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
IEA
ISS
(PMID:28561066)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:28561066 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:14,776,293...14,782,202
JBrowse link
G Wdr45b WD repeat domain 45B involved_in ISO (PMID:28561066) RGD PMID:28561066 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:28561066) RGD PMID:28561066 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:94,542,946...94,579,846
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:20505359), (PMID:28561066), (PMID:28890335)
UniProt
RGD
PMID:20505359 PMID:28561066 PMID:28890335 GO_REF:0000024 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:11,911,337...11,939,794
JBrowse link
autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afg2b AFG2 AAA ATPase homolog B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:130,148,061...130,162,458
Ensembl chr 3:109,694,757...109,707,757
JBrowse link
G Atg12 autophagy related 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:41,638,841...41,649,311
Ensembl chr18:39,452,191...39,462,418
JBrowse link
G Atg14 autophagy related 14 involved_in ISO (PMID:10625637) RGD PMID:10625637 NCBI chr15:23,275,457...23,306,817
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Becn1 beclin 1 involved_in ISO (PMID:10625637) RGD PMID:10625637 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Chmp1a charged multivesicular body protein 1A involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr19:68,146,672...68,154,952
Ensembl chr19:51,238,160...51,246,436
JBrowse link
G Chmp1b charged multivesicular body protein 1B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr18:63,010,270...63,012,800 JBrowse link
G Chmp2a charged multivesicular body protein 2A involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 1:82,731,212...82,735,088
Ensembl chr 1:73,660,046...73,662,452
JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr11:16,783,971...16,810,500
Ensembl chr11:3,337,494...3,385,181
JBrowse link
G Chmp3 charged multivesicular body protein 3 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 4:105,134,860...105,180,862
Ensembl chr 4:103,576,515...103,623,959
JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 3:163,631,054...163,671,569
Ensembl chr 3:143,170,902...143,210,844
JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in ISO
IEA
(PMID:17984323)
GO_REF:0000107
RGD
Ensembl
PMID:17984323 GO_REF:0000107 NCBI chr 2:93,299,152...93,336,075
Ensembl chr 2:91,388,530...91,428,668
JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 5:60,877,369...60,894,512
Ensembl chr 5:56,081,343...56,098,529
JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr10:105,690,400...105,696,070
Ensembl chr10:105,191,950...105,197,640
JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr15:51,200,759...51,215,992
Ensembl chr15:44,790,996...44,806,216
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin acts_upstream_of_or_within ISO MGI:2388888 (PMID:16714284) RGD PMID:16714284 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within ISO (PMID:27715390) RGD PMID:27715390 NCBI chr 8:119,158,380...119,173,483
Ensembl chr 8:110,279,979...110,295,067
JBrowse link
G Epg5 ectopic P-granules 5 autophagy tethering factor involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:5505596 (PMID:23479740)
GO_Central
RGD
PMID:23479740 GO_REF:0000033 NCBI chr18:73,679,106...73,776,694
Ensembl chr18:71,404,010...71,501,502
JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:55,213,465...55,216,787
Ensembl chr10:54,714,198...54,717,765
JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:164,666,332...164,675,474
Ensembl chr 4:162,980,249...162,989,450
JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:56,819,826...56,830,662
Ensembl chr19:39,910,534...39,924,628
JBrowse link
G Gabarapl3 GABA type A receptor associated protein like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:89,246,175...89,247,132
Ensembl chr 8:89,246,195...89,247,139
JBrowse link
G Gabarapl4 gamma-aminobutyric acid receptor associated protein like 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:55,052,756...55,053,109
Ensembl chr19:55,052,756...55,053,109
JBrowse link
G Irgm immunity-related GTPase M involved_in ISS
ISO
GO_REF:0000024
(PMID:21757726)
UniProt
RGD
PMID:21757726 GO_REF:0000024 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,233,455...33,241,578
JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 involved_in ISS
ISO
IBA
IEA
GO_REF:0000024
(PMID:27628032)
GO_REF:0000033
GO_REF:0000107
UniProt
RGD
GO_Central
Ensembl
PMID:27628032 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:122,038,734...122,087,745
Ensembl chr  X:117,057,606...117,260,522
JBrowse link
G Lix1 limb and CNS expressed 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:58,128,961...58,187,554
Ensembl chr 1:58,128,961...58,185,964
JBrowse link
G Lix1l limb and CNS expressed 1 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:186,824,864...186,850,761
Ensembl chr 2:184,136,038...184,161,916
JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISO
IBA
(PMID:28223137)
GO_REF:0000033
RGD
GO_Central
PMID:28223137 GO_REF:0000033 NCBI chr 3:164,243,204...164,244,850
Ensembl chr 3:143,783,024...143,784,670
JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISO
IBA
(PMID:28223137)
GO_REF:0000033
RGD
GO_Central
PMID:28223137 GO_REF:0000033 NCBI chr19:66,571,631...66,582,270
Ensembl chr19:49,665,791...49,677,690
Ensembl chr16:49,665,791...49,677,690
JBrowse link
G Mcoln1 mucolipin TRP cation channel 1 acts_upstream_of_or_within ISO MGI:3794204 (PMID:20600908) RGD PMID:20600908 NCBI chr12:6,357,851...6,372,151
Ensembl chr12:1,560,359...1,574,252
JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within
involved_in
ISO
IBA
(PMID:29514215)
GO_REF:0000033
RGD
GO_Central
PMID:29514215 GO_REF:0000033 NCBI chr 2:125,749,994...125,784,689
Ensembl chr 2:123,816,614...123,857,971
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in ISO
IEA
(PMID:10625637)
GO_REF:0000107
RGD
Ensembl
PMID:10625637 GO_REF:0000107 NCBI chr18:22,119,677...22,203,546
Ensembl chr18:21,845,295...21,929,048
JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 involved_in ISO (PMID:10625637) RGD PMID:10625637 NCBI chr 8:115,146,660...115,195,326
Ensembl chr 8:106,267,954...106,316,584
JBrowse link
G Rubcnl rubicon like autophagy enhancer involved_in ISO
IBA
(PMID:28306502), (PMID:30704899)
(PMID:30704899)
GO_REF:0000033
RGD
GO_Central
PMID:28306502 PMID:30704899 GO_REF:0000033 NCBI chr15:56,741,897...56,807,086
Ensembl chr15:50,332,418...50,400,849
JBrowse link
G Snap29 synaptosome associated protein 29 involved_in ISS
ISO
GO_REF:0000024
(PMID:23217709)
UniProt
RGD
PMID:23217709 GO_REF:0000024 NCBI chr11:97,082,721...97,113,195
Ensembl chr11:83,578,489...83,608,958
JBrowse link
G Snapin SNAP-associated protein acts_upstream_of_or_within ISO MGI:3608768 (PMID:20920792), (PMID:22797916) RGD PMID:20920792 PMID:22797916 NCBI chr 2:175,971,575...175,974,164
Ensembl chr 2:175,971,257...175,974,231
JBrowse link
G Snx14 sorting nexin 14 involved_in ISO
IBA
(PMID:25848753)
GO_REF:0000033
RGD
GO_Central
PMID:25848753 GO_REF:0000033 NCBI chr 8:89,283,673...89,390,597
Ensembl chr 8:89,298,114...89,390,580
JBrowse link
G Stx17 syntaxin 17 involved_in ISO
ISS
(PMID:23217709), (PMID:24554770), (PMID:28306502)
GO_REF:0000024
RGD
UniProt
PMID:23217709 PMID:24554770 PMID:28306502 GO_REF:0000024 NCBI chr 5:67,241,673...67,302,228
Ensembl chr 5:62,446,187...62,504,451
JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:22342342)
UniProt
GO_Central
RGD
PMID:22342342 GO_REF:0000024 GO_REF:0000033 NCBI chr12:10,391,587...10,420,462
Ensembl chr12:10,391,696...10,419,611
JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:23459205)
Ensembl
RGD
PMID:23459205 GO_REF:0000107 NCBI chr17:6,438,456...6,482,498
Ensembl chr17:6,439,002...6,477,090
JBrowse link
G Uvrag UV radiation resistance associated involved_in ISO (PMID:28306502) RGD PMID:28306502 NCBI chr 1:162,596,514...162,854,348
Ensembl chr 1:153,185,395...153,442,136
JBrowse link
G Vamp7 vesicle-associated membrane protein 7 NOT|involved_in ISO (PMID:23217709) RGD PMID:23217709 NCBI chr12:21,842,206...21,958,556
Ensembl chr12:16,728,524...16,764,097
JBrowse link
G Vamp8 vesicle-associated membrane protein 8 involved_in ISO
ISS
(PMID:23217709)
GO_REF:0000024
RGD
UniProt
PMID:23217709 GO_REF:0000024 NCBI chr 4:106,000,570...106,011,081
Ensembl chr 4:104,442,393...104,452,897
JBrowse link
G Vcp valosin-containing protein involved_in ISO
IBA
ISS
(PMID:20104022)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:20104022 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:62,005,984...62,025,387
Ensembl chr 5:57,210,168...57,229,571
JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog NOT|involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 6:112,619,228...112,644,089
Ensembl chr 6:106,888,284...106,913,117
JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 3:138,075,649...138,097,154
Ensembl chr 3:117,622,542...117,646,441
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in ISO
IEA
(PMID:24554770), (PMID:25783203)
GO_REF:0000107
RGD
Ensembl
PMID:24554770 PMID:25783203 GO_REF:0000107 NCBI chr12:33,024,596...33,051,399
Ensembl chr12:33,024,650...33,051,393
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated NOT|involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 1:143,633,167...143,656,228
Ensembl chr 1:134,223,949...134,246,970
JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B NOT|involved_in ISO (PMID:23217709) RGD PMID:23217709 NCBI chr 6:97,957,700...97,976,491
Ensembl chr 6:97,961,346...97,976,465
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 NOT|involved_in ISO (PMID:20505359) RGD PMID:20505359 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:11,911,337...11,939,794
JBrowse link
autophagosome membrane docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 involved_in ISO
IBA
(PMID:25686604)
GO_REF:0000033
RGD
GO_Central
PMID:25686604 GO_REF:0000033 NCBI chr15:23,275,457...23,306,817
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISO
ISS
(PMID:28890335)
GO_REF:0000024
RGD
UniProt
PMID:28890335 GO_REF:0000024 NCBI chr12:39,733,519...39,782,942
Ensembl chr12:34,072,683...34,122,101
JBrowse link
G Calm1 calmodulin 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:28890335)
UniProt
RGD
PMID:28890335 GO_REF:0000024 NCBI chr 6:125,217,191...125,227,855
Ensembl chr 6:119,487,621...119,498,227
JBrowse link
G Calm2 calmodulin 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:28890335)
UniProt
RGD
PMID:28890335 GO_REF:0000024 NCBI chr 6:12,845,170...12,857,830
Ensembl chr 6:7,091,567...7,104,287
Ensembl chr15:7,091,567...7,104,287
JBrowse link
G Calm3 calmodulin 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:28890335)
UniProt
RGD
PMID:28890335 GO_REF:0000024 NCBI chr 1:86,718,761...86,725,869
Ensembl chr 1:77,589,230...77,592,207
JBrowse link
G Snap29 synaptosome associated protein 29 involved_in ISO
IEA
(PMID:25686604)
GO_REF:0000107
RGD
Ensembl
PMID:25686604 GO_REF:0000107 NCBI chr11:97,082,721...97,113,195
Ensembl chr11:83,578,489...83,608,958
JBrowse link
G Stx17 syntaxin 17 involved_in ISO (PMID:25686604) RGD PMID:25686604 NCBI chr 5:67,241,673...67,302,228
Ensembl chr 5:62,446,187...62,504,451
JBrowse link
G Vamp8 vesicle-associated membrane protein 8 involved_in ISO
IEA
(PMID:25686604)
GO_REF:0000107
RGD
Ensembl
PMID:25686604 GO_REF:0000107 NCBI chr 4:106,000,570...106,011,081
Ensembl chr 4:104,442,393...104,452,897
JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:28890335)
UniProt
Ensembl
RGD
PMID:28890335 GO_REF:0000024 GO_REF:0000107 NCBI chr10:71,903,223...72,002,337
Ensembl chr10:71,405,452...71,505,007
JBrowse link
autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:22186024) RGD PMID:22186024 NCBI chr 5:158,575,727...158,595,157
Ensembl chr 5:153,292,751...153,312,139
JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) RGD PMID:23707074 NCBI chr 2:176,902,141...176,916,015
Ensembl chr 2:174,609,403...174,618,263
JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha acts_upstream_of_or_within ISO MGI:2685045 (PMID:24098492) RGD PMID:24098492 NCBI chr 1:170,577,942...170,684,353
Ensembl chr 1:170,577,942...170,683,472
JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta acts_upstream_of_or_within ISO MGI:1203729 (PMID:24098492) RGD PMID:24098492 NCBI chr13:47,046,866...47,107,733
Ensembl chr13:44,495,050...44,555,612
JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:25365221) RGD PMID:25365221 NCBI chr 3:129,453,118...129,526,469
Ensembl chr 3:109,008,135...109,072,911
JBrowse link
G Zfyve26 zinc finger FYVE-type containing 26 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:25365221)
GO_REF:0000107
RGD
Ensembl
PMID:25365221 GO_REF:0000107 NCBI chr 6:103,764,864...103,828,520
Ensembl chr 6:98,032,520...98,095,480
JBrowse link
autophagosome-endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rubcnl rubicon like autophagy enhancer involved_in ISO
IBA
(PMID:28306502)
GO_REF:0000033
RGD
GO_Central
PMID:28306502 GO_REF:0000033 NCBI chr15:56,741,897...56,807,086
Ensembl chr15:50,332,418...50,400,849
JBrowse link
autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028769.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Arl8b ARF like GTPase 8B involved_in ISO
ISS
(PMID:28325809)
GO_REF:0000024
RGD
UniProt
PMID:28325809 GO_REF:0000024 NCBI chr 4:143,304,597...143,348,580
Ensembl chr 4:141,748,587...141,792,596
JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO
IBA
(PMID:30538141)
GO_REF:0000033
RGD
GO_Central
PMID:30538141 GO_REF:0000033 NCBI chr 5:158,575,727...158,595,157
Ensembl chr 5:153,292,751...153,312,139
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:26450516) RGD PMID:26450516 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
JBrowse link
G Diaph3 diaphanous-related formin 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:33036023)
Ensembl
RGD
PMID:33036023 GO_REF:0000107 NCBI chr15:68,951,992...69,421,623
Ensembl chr15:62,543,375...63,012,975
JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:29727621)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:29727621 GO_REF:0000024 GO_REF:0000107 NCBI chr17:81,496,669...81,668,180
Ensembl chr17:81,496,670...81,668,029
JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:29727621)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:29727621 GO_REF:0000024 GO_REF:0000107 NCBI chr10:82,706,016...82,734,938
Ensembl chr10:82,701,098...82,734,938
JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 involved_in ISO
ISS
(PMID:28325809)
GO_REF:0000024
RGD
UniProt
PMID:28325809 GO_REF:0000024 NCBI chr10:88,313,837...88,366,182
Ensembl chr10:88,314,651...88,362,412
JBrowse link
G Rubcnl rubicon like autophagy enhancer involved_in ISO
IBA
(PMID:28306502)
GO_REF:0000033
RGD
GO_Central
PMID:28306502 GO_REF:0000033 NCBI chr15:56,741,897...56,807,086
Ensembl chr15:50,332,418...50,400,849
JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:23023224) RGD PMID:23023224 NCBI chr19:13,411,227...13,446,129
Ensembl chr19:13,405,501...13,440,384
JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in ISO (PMID:33422265) RGD PMID:33422265 NCBI chr 3:127,721,076...127,758,658
Ensembl chr 3:107,267,310...107,304,975
JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:14,748,717...14,840,273
Ensembl chr12:9,635,025...9,726,519
JBrowse link
glycophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:41,638,841...41,649,311
Ensembl chr18:39,452,191...39,462,418
JBrowse link
G Atg2a autophagy related 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:130,286,979...130,357,109
Ensembl chr 6:124,525,523...124,592,015
JBrowse link
G Atg3 autophagy related 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:69,130,948...69,159,280
Ensembl chr11:55,624,917...55,653,224
JBrowse link
G Gaa alpha glucosidase involved_in IEA
ISO
GO_REF:0000107
MGI:2148550 (PMID:12739885)
Ensembl
RGD
PMID:12739885 GO_REF:0000107 NCBI chr10:105,028,106...105,045,365
Ensembl chr10:104,529,747...104,546,836
JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in ISO (PMID:20810658) RGD PMID:20810658 NCBI chr 4:164,666,332...164,675,474
Ensembl chr 4:162,980,249...162,989,450
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:17,948,522...18,012,434
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO
ISS
(PMID:20810658)
GO_REF:0000024
RGD
GO_Central
PMID:20810658 GO_REF:0000024 NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,469,582...15,477,443
JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:14,776,293...14,782,202
JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:94,542,946...94,579,846
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:11,911,337...11,939,794
JBrowse link
lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aup1 AUP1, lipid droplet regulating VLDL assembly factor involved_in ISO
IEA
(PMID:29902443)
GO_REF:0000107
RGD
Ensembl
PMID:29902443 GO_REF:0000107 NCBI chr 4:117,118,035...117,121,063
Ensembl chr 4:115,560,261...115,563,346
JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISS
ISO
GO_REF:0000024
(PMID:23708524)
GO_Central
RGD
PMID:23708524 GO_REF:0000024 NCBI chr 4:122,019,281...122,068,067
Ensembl chr 4:120,461,963...120,506,889
JBrowse link
G Spart spartin involved_in ISO (PMID:37443287), (PMID:38190532) RGD PMID:37443287 PMID:38190532 NCBI chr 2:141,442,770...141,469,388
Ensembl chr 2:139,292,355...139,319,248
JBrowse link
mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07040864.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Abi2 abl-interactor 2 involved_in ISO (PMID:38081847) RGD PMID:38081847 NCBI chr 9:69,321,072...69,490,630
Ensembl chr 9:61,827,139...61,905,699
JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO
IBA
UniProtKB:O60260|UniProtKB:Q99MQ3 (PMID:21753002), (PMID:25215947)
GO_REF:0000033
RGD
GO_Central
PMID:21753002 PMID:25215947 GO_REF:0000033 NCBI chr 3:98,156,626...98,345,876
Ensembl chr 3:77,700,936...77,890,221
JBrowse link
G Arfip2 ARF interacting protein 2 involved_in ISO
ISS
(PMID:33773106)
GO_REF:0000024
RGD
UniProt
PMID:33773106 GO_REF:0000024 NCBI chr 1:169,387,484...169,392,290
Ensembl chr 1:159,974,201...159,980,336
JBrowse link
G Arhgap26 Rho GTPase activating protein 26 involved_in ISO (PMID:38081847) RGD PMID:38081847 NCBI chr18:30,702,602...31,489,047
Ensembl chr18:30,838,671...31,235,194
JBrowse link
G Atg10 autophagy related 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:22,109,304...22,398,313
Ensembl chr 2:22,108,426...22,398,233
JBrowse link
G Atg13 autophagy related 13 involved_in IBA
ISO
GO_REF:0000033
(PMID:21855797)
GO_Central
RGD
PMID:21855797 GO_REF:0000033 NCBI chr 3:98,102,831...98,136,741
Ensembl chr 3:77,645,790...77,681,043
JBrowse link
G Atg14 autophagy related 14 involved_in ISO
IBA
(PMID:23878393)
GO_REF:0000033
RGD
GO_Central
PMID:23878393 GO_REF:0000033 NCBI chr15:23,275,457...23,306,817
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Atg4a autophagy related 4A, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:109,453,712...109,553,758
Ensembl chr  X:104,665,345...104,765,268
JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IBA
IEA
(PMID:33773106)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:33773106 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103
JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:118,977,594...119,050,894
Ensembl chr 5:113,867,092...113,934,830
JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISO
IBA
(PMID:33773106)
GO_REF:0000033
RGD
GO_Central
PMID:33773106 GO_REF:0000033 NCBI chr 8:28,083,902...28,093,491
Ensembl chr 8:19,807,766...19,817,321
JBrowse link
G Atg5 autophagy related 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Atg7 autophagy related 7 involved_in IEA
IBA
ISO
GO_REF:0000107
GO_REF:0000033
(PMID:20080761)
UniProtKB:Q9BXM7 (PMID:19279012)
Ensembl
GO_Central
RGD
PMID:19279012 PMID:20080761 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G Atg9a autophagy related 9A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:84,126,071...84,136,723
Ensembl chr 9:76,677,404...76,687,986
JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651
JBrowse link
G Bcl2l13 Bcl2-like 13 acts_upstream_of_or_within ISO (PMID:31266807) RGD PMID:31266807 NCBI chr 4:155,728,284...155,785,058
Ensembl chr 4:154,056,127...154,108,985
JBrowse link
G Becn1 beclin 1 involved_in ISO
IBA
(PMID:23878393), (PMID:25215947)
GO_REF:0000033
RGD
GO_Central
PMID:23878393 PMID:25215947 GO_REF:0000033 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Becn2 beclin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:87,842,980...87,892,410
Ensembl chr13:87,844,531...87,845,787
JBrowse link
G Bnip3 BCL2 interacting protein 3 involved_in ISO (PMID:22505714) RGD PMID:22505714 NCBI chr 1:203,137,778...203,154,962
Ensembl chr 1:193,708,167...193,725,359
JBrowse link
G Clec16a C-type lectin domain containing 16A involved_in ISO (PMID:35604110) RGD PMID:35604110 NCBI chr10:5,434,725...5,631,246
Ensembl chr10:4,928,030...5,123,578
JBrowse link
G Ctsk cathepsin K involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr 2:185,747,548...185,758,512
Ensembl chr 2:183,058,569...183,069,550
JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha involved_in ISO
ISS
(PMID:38340717)
GO_REF:0000024
RGD
UniProt
PMID:38340717 GO_REF:0000024 NCBI chr 6:103,405,880...103,430,549
Ensembl chr 6:97,672,766...97,706,225
JBrowse link
G Fundc1 FUN14 domain containing 1 involved_in ISO UniProtKB:P09936 (PMID:34244144) RGD PMID:34244144 NCBI chr  X:5,083,635...5,100,293
Ensembl chr  X:5,083,617...5,100,284
JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:55,213,465...55,216,787
Ensembl chr10:54,714,198...54,717,765
JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:164,666,332...164,675,474
Ensembl chr 4:162,980,249...162,989,450
JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:56,819,826...56,830,662
Ensembl chr19:39,910,534...39,924,628
JBrowse link
G Gabarapl3 GABA type A receptor associated protein like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:89,246,175...89,247,132
Ensembl chr 8:89,246,195...89,247,139
JBrowse link
G Gabarapl4 gamma-aminobutyric acid receptor associated protein like 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:55,052,756...55,053,109
Ensembl chr19:55,052,756...55,053,109
JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) RGD PMID:23707074 NCBI chr 2:176,902,141...176,916,015
Ensembl chr 2:174,609,403...174,618,263
JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) RGD PMID:33773106 NCBI chr 2:173,919,330...174,500,536
Ensembl chr 2:171,621,507...172,202,724
JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:164,243,204...164,244,850
Ensembl chr 3:143,783,024...143,784,670
JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
UniProtKB:Q9BXM7 (PMID:19279012), (PMID:28017329)
UniProt
GO_Central
RGD
PMID:19279012 PMID:28017329 GO_REF:0000024 GO_REF:0000033 NCBI chr19:66,571,631...66,582,270
Ensembl chr19:49,665,791...49,677,690
Ensembl chr16:49,665,791...49,677,690
JBrowse link
G Nipsnap1 nipsnap homolog 1 involved_in ISO (PMID:30982665) RGD PMID:30982665 NCBI chr14:83,957,714...83,981,579
Ensembl chr14:79,734,209...79,758,098
JBrowse link
G Nipsnap2 nipsnap homolog 2 involved_in ISO (PMID:30982665) RGD PMID:30982665 NCBI chr12:32,542,171...32,580,345
Ensembl chr12:26,911,723...26,944,166
JBrowse link
G Nipsnap3a nipsnap homolog 3A (C. elegans) involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 5:67,613,993...67,625,067
Ensembl chr 5:67,614,036...67,669,700
JBrowse link
G Nipsnap3b nipsnap homolog 3B involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 5:67,637,644...67,669,698
Ensembl chr 5:67,614,036...67,669,700
JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA
ISO
GO_REF:0000107
(PMID:33406421)
Ensembl
RGD
PMID:33406421 GO_REF:0000107 NCBI chr  X:70,811,317...70,856,123
Ensembl chr  X:66,771,349...66,816,146
JBrowse link
G Phb2 prohibitin 2 involved_in ISO
IEA
ISS
(PMID:28017329)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:28017329 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:159,203,948...159,208,561
Ensembl chr 4:157,517,577...157,522,272
JBrowse link
G Pink1 PTEN induced kinase 1 involved_in IMP
ISO
UniProtKB:Q8CGY8 (PMID:33406421), (PMID:38081847) RGD PMID:33406421 PMID:38081847 PMID:25154397 RGD:12904014 NCBI chr 5:155,813,838...155,825,950
Ensembl chr 5:150,530,523...150,542,635
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in
acts_upstream_of_or_within
IDA
IBA
ISO
PMID:20457763
GO_REF:0000033
(PMID:23685073), (PMID:28017329)
MGI:1921624 (PMID:24949970)
GO_Central
RGD
PMID:23685073 PMID:24949970 PMID:28017329 PMID:20457763 GO_REF:0000033, RGD:10047224 NCBI chr 1:51,236,410...52,430,242
Ensembl chr 1:48,690,556...49,882,555
JBrowse link
G Retreg1 reticulophagy regulator 1 acts_upstream_of_or_within ISO (PMID:31446166) RGD PMID:31446166 NCBI chr 2:78,045,435...78,205,316
Ensembl chr 2:76,335,609...76,493,898
JBrowse link
G Rimoc1 RAB7A interacting MON1-CCZ1 complex subunit 1 involved_in ISO (PMID:34432599) RGD PMID:34432599 NCBI chr 2:53,189,787...53,203,981
Ensembl chr 2:53,189,790...53,203,821
JBrowse link
G Snx30 sorting nexin family member 30 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:74,683,902...74,813,013
Ensembl chr 5:74,684,015...74,792,631
JBrowse link
G Snx7 sorting nexin 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:205,843,164...205,927,737
Ensembl chr 2:205,842,837...205,927,763
JBrowse link
G Spata33 spermatogenesis associated 33 involved_in ISO (PMID:33087875) RGD PMID:33087875 NCBI chr19:51,246,514...51,258,894
Ensembl chr19:51,246,514...51,258,894
JBrowse link
G Sqstm1 sequestosome 1 involved_in ISO
IBA
UniProtKB:Q9JK66 (PMID:20457763)
GO_REF:0000033
RGD
GO_Central
PMID:20457763 GO_REF:0000033 NCBI chr10:35,026,598...35,037,750
Ensembl chr10:34,525,519...34,536,673
JBrowse link
G Tafazzin tafazzin, phospholipid-lysophospholipid transacylase involved_in ISO (PMID:33096711)
(PMID:25919711)
RGD PMID:25919711 PMID:33096711 NCBI chr  X:157,216,826...157,230,524
Ensembl chr  X:152,065,609...152,074,001
JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase acts_upstream_of ISO MGI:5319187 (PMID:22044588) RGD PMID:22044588 NCBI chr 4:161,613,306...161,632,248
Ensembl chr 4:159,927,139...159,946,029
Ensembl chr 6:159,927,139...159,946,029
JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
MGI:1857263 (PMID:22044588)
Ensembl
RGD
PMID:22044588 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO
IBA
(PMID:21855797)
GO_REF:0000033
RGD
GO_Central
PMID:21855797 GO_REF:0000033 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:46,951,038...47,029,844
Ensembl chr10:46,454,030...46,530,407
JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:66,888,820...66,895,380
Ensembl chr 8:57,992,723...57,999,467
JBrowse link
negative regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac6 histone deacetylase 6 involved_in ISO (PMID:31857589) RGD PMID:31857589 NCBI chr  X:17,222,538...17,244,373
Ensembl chr  X:14,551,044...14,572,441
JBrowse link
G Lypla1 lysophospholipase 1 involved_in ISO (PMID:37802024) RGD PMID:37802024 NCBI chr 5:19,477,408...19,506,568
Ensembl chr 5:14,679,606...14,708,746
JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 acts_upstream_of_or_within ISO MGI:2683833 (PMID:27994061) RGD PMID:27994061 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO (PMID:23918802) RGD PMID:23918802 NCBI chr20:3,924,263...3,941,238
Ensembl chr20:3,919,624...3,941,547
JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 involved_in ISO
ISS
(PMID:25495476)
GO_REF:0000024
RGD
GO_Central
PMID:25495476 GO_REF:0000024 NCBI chr 8:44,733,288...44,778,519
Ensembl chr 8:36,544,535...36,589,683
JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:25495476)
GO_Central
Ensembl
RGD
PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:22,406,685...22,446,745
Ensembl chr 6:16,654,614...16,694,626
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO (PMID:23916833) RGD PMID:23916833 NCBI chr 7:124,706,246...124,867,234
Ensembl chr 7:122,826,696...122,987,703
JBrowse link
G Mtm1 myotubularin 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2450997 (PMID:23695157)
GO_Central
RGD
PMID:23695157 GO_REF:0000033 NCBI chr 6:6,234,917...6,252,874
Ensembl chr 6:488,969...506,860
JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISS
ISO
GO_REF:0000024
(PMID:20181828)
UniProt
RGD
PMID:20181828 GO_REF:0000024 NCBI chr 1:190,643,866...190,645,901
Ensembl chr 1:181,213,368...181,215,281
JBrowse link
G Phf23 PHD finger protein 23 involved_in ISO
IBA
IEA
ISS
(PMID:25484098)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
PMID:25484098 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:55,217,351...55,221,471
Ensembl chr10:54,717,724...54,722,782
JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) RGD PMID:19279012 NCBI chr 5:155,813,838...155,825,950
Ensembl chr 5:150,530,523...150,542,635
JBrowse link
G Scfd1 sec1 family domain containing 1 involved_in ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 6:74,531,225...74,609,463
Ensembl chr 6:68,795,878...68,874,078
JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 2:188,188,783...188,209,565
Ensembl chr 2:185,500,004...185,522,026
JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:45,957,146...45,968,388
Ensembl chr10:45,457,605...45,468,876
JBrowse link
G Tmem39a transmembrane protein 39a involved_in ISO
IBA
ISS
(PMID:31806350)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:31806350 GO_REF:0000024 GO_REF:0000033 NCBI chr11:75,666,154...75,695,486
Ensembl chr11:62,160,631...62,189,964
JBrowse link
negative regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A involved_in ISO (PMID:28223137) RGD PMID:28223137 NCBI chr10:5,434,725...5,631,246
Ensembl chr10:4,928,030...5,123,578
JBrowse link
G Phf23 PHD finger protein 23 involved_in ISO
IBA
IEA
ISS
(PMID:25484098)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
PMID:25484098 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:55,217,351...55,221,471
Ensembl chr10:54,717,724...54,722,782
JBrowse link
G Rubcn rubicon autophagy regulator involved_in ISO
IBA
(PMID:21062745)
GO_REF:0000033
RGD
GO_Central
PMID:21062745 GO_REF:0000033 NCBI chr11:81,420,261...81,469,415
Ensembl chr11:67,907,516...67,964,314
JBrowse link
G Tmem39a transmembrane protein 39a involved_in ISO
IBA
ISS
(PMID:31806350)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:31806350 GO_REF:0000024 GO_REF:0000033 NCBI chr11:75,666,154...75,695,486
Ensembl chr11:62,160,631...62,189,964
JBrowse link
G Ubqln4 ubiquilin 4 involved_in ISO (PMID:23459205) RGD PMID:23459205 NCBI chr 2:176,310,524...176,325,724
Ensembl chr 2:174,012,777...174,028,059
JBrowse link
negative regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmox1 heme oxygenase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2429784 (PMID:20705711)
Ensembl
RGD
PMID:20705711 GO_REF:0000107 NCBI chr19:13,452,365...13,479,823
Ensembl chr19:13,467,244...13,474,079
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO (PMID:19640926) RGD PMID:19640926 NCBI chr 7:124,706,246...124,867,234
Ensembl chr 7:122,826,696...122,987,703
JBrowse link
G Lzts1 leucine zipper tumor suppressor 1 involved_in ISO (PMID:22354037) RGD PMID:22354037 NCBI chr16:25,309,502...25,364,942
Ensembl chr16:20,542,809...20,598,203
JBrowse link
G Mtor mechanistic target of rapamycin kinase acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(PMID:25327288)
(PMID:16714284), (PMID:23274896)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:16714284 PMID:23274896 PMID:25327288 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:158,884,804...158,994,311
JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 acts_upstream_of_or_within ISO MGI:1857409|MGI:1891828 (PMID:17468177) RGD PMID:17468177 NCBI chr18:3,654,237...3,699,853
Ensembl chr18:3,379,482...3,425,049
JBrowse link
G Nrbp2 nuclear receptor binding protein 2 involved_in ISO (PMID:22354037) RGD PMID:22354037 NCBI chr 7:109,679,330...109,685,656
Ensembl chr 7:107,799,497...107,805,230
JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) RGD PMID:19279012 NCBI chr 5:155,813,838...155,825,950
Ensembl chr 5:150,530,523...150,542,635
JBrowse link
G Poldip2 DNA polymerase delta interacting protein 2 acts_upstream_of_or_within ISO MGI:4044390 (PMID:24797518) RGD PMID:24797518 NCBI chr10:63,905,287...63,915,655
Ensembl chr10:63,407,213...63,417,605
JBrowse link
G Qsox1 quiescin sulfhydryl oxidase 1 involved_in ISO (PMID:24475161) RGD PMID:24475161 NCBI chr13:70,500,060...70,537,711
Ensembl chr13:67,949,780...67,987,459
JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:45,957,146...45,968,388
Ensembl chr10:45,457,605...45,468,876
JBrowse link
G Tsc1 TSC complex subunit 1 involved_in IMP PMID:23435171 ParkinsonsUK-UCL PMID:23435171 RGD:10448950 NCBI chr 3:32,367,434...32,416,565
Ensembl chr 3:11,979,729...12,015,674
JBrowse link
G Tsc2 TSC complex subunit 2 IMP RGD PMID:24599401 RGD:11568679 NCBI chr10:14,125,679...14,160,317
Ensembl chr10:13,621,136...13,655,951
JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in ISO (PMID:22622177) RGD PMID:22622177 NCBI chr10:103,995,970...104,027,492
Ensembl chr10:103,497,349...103,528,877
JBrowse link
negative regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO MGI:5648633 (PMID:24949970) RGD PMID:24949970 NCBI chr10:5,434,725...5,631,246
Ensembl chr10:4,928,030...5,123,578
JBrowse link
G Fbxl4 F-box and leucine-rich repeat protein 4 involved_in IEA
ISO
GO_REF:0000107
(PMID:38992176)
Ensembl
RGD
PMID:38992176 GO_REF:0000107 NCBI chr 5:40,752,513...40,826,154
Ensembl chr 5:35,955,812...36,029,443
JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) RGD PMID:19279012 NCBI chr 5:155,813,838...155,825,950
Ensembl chr 5:150,530,523...150,542,635
JBrowse link
G Pptc7 protein phosphatase targeting COQ7 involved_in IEA
ISO
GO_REF:0000107
(PMID:38992176)
Ensembl
RGD
PMID:38992176 GO_REF:0000107 NCBI chr12:39,910,728...39,949,101
Ensembl chr12:34,249,977...34,288,339
JBrowse link
G Rnf41 ring finger protein 41 acts_upstream_of_or_within ISO MGI:1921624 (PMID:24949970) RGD PMID:24949970 NCBI chr 7:1,422,651...1,461,700
Ensembl chr 7:838,203...865,511
JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase acts_upstream_of_or_within ISO MGI:5319187 (PMID:22044588) RGD PMID:22044588 NCBI chr 4:161,613,306...161,632,248
Ensembl chr 4:159,927,139...159,946,029
Ensembl chr 6:159,927,139...159,946,029
JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857263 (PMID:22044588)
Ensembl
RGD
PMID:22044588 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Tspo translocator protein involved_in ISO (PMID:25470454) RGD PMID:25470454 NCBI chr 7:116,600,214...116,610,461
Ensembl chr 7:114,720,188...114,730,450
JBrowse link
G Usp30 ubiquitin specific peptidase 30 IMP RGD PMID:24896179 RGD:13208875 NCBI chr12:48,161,905...48,215,878
Ensembl chr12:42,501,348...42,555,616
JBrowse link
negative regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htra2 HtrA serine peptidase 2 involved_in ISO (PMID:24709290) RGD PMID:24709290 NCBI chr 4:117,114,631...117,117,793
Ensembl chr 4:115,556,916...115,560,095
JBrowse link
G Vps13c vacuolar protein sorting 13 homolog C involved_in ISO
ISS
(PMID:26942284)
GO_REF:0000024
RGD
ParkinsonsUK-UCL
PMID:26942284 GO_REF:0000024 NCBI chr 8:77,359,499...77,533,009
Ensembl chr 8:68,478,395...68,651,895
JBrowse link
nucleophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg3 autophagy related 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:69,130,948...69,159,280
Ensembl chr11:55,624,917...55,653,224
JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:14,776,293...14,782,202
JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:94,542,946...94,579,846
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:11,911,337...11,939,794
JBrowse link
pexophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acbd5 acyl-CoA binding domain containing 5 involved_in IEA
ISO
GO_REF:0000002
(PMID:24535825)
InterPro
RGD
PMID:24535825 GO_REF:0000002 NCBI chr17:90,114,250...90,156,286
Ensembl chr17:85,206,303...85,248,215
JBrowse link
G Acbd5l1 acyl-CoA binding domain containing 5 like 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:1,449,905...1,452,857
Ensembl chr 5:1,451,326...1,453,094
JBrowse link
G Atg2a autophagy related 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:130,286,979...130,357,109
Ensembl chr 6:124,525,523...124,592,015
JBrowse link
G Atm ATM serine/threonine kinase involved_in ISO (PMID:26344566) RGD PMID:26344566 NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Pex2 peroxisomal biogenesis factor 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:26344566), (PMID:27597759)
UniProt
Ensembl
RGD
PMID:26344566 PMID:27597759 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:97,957,479...97,973,767
Ensembl chr 2:96,045,958...96,073,404
JBrowse link
G Pex5 peroxisomal biogenesis factor 5 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:26344566)
UniProt
Ensembl
RGD
PMID:26344566 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:158,956,973...158,983,581
Ensembl chr 4:157,270,672...157,296,431
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:22,119,677...22,203,546
Ensembl chr18:21,845,295...21,929,048
JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:115,146,660...115,195,326
Ensembl chr 8:106,267,954...106,316,584
JBrowse link
G Pjvk pejvakin involved_in ISO (PMID:30936319) RGD PMID:30936319 NCBI chr 3:61,594,644...61,605,051
Ensembl chr 3:61,596,641...61,605,045
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:17,948,522...18,012,434
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Sqstm1 sequestosome 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:26344566)
UniProt
RGD
PMID:26344566 GO_REF:0000024 NCBI chr10:35,026,598...35,037,750
Ensembl chr10:34,525,519...34,536,673
JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:14,776,293...14,782,202
JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:94,542,946...94,579,846
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:11,911,337...11,939,794
JBrowse link
piecemeal microautophagy of the nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07040864.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Atg12 autophagy related 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:41,638,841...41,649,311
Ensembl chr18:39,452,191...39,462,418
JBrowse link
G Atg13 autophagy related 13 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:98,102,831...98,136,741
Ensembl chr 3:77,645,790...77,681,043
JBrowse link
G Atg2a autophagy related 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:130,286,979...130,357,109
Ensembl chr 6:124,525,523...124,592,015
JBrowse link
G Atg4a autophagy related 4A, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:109,453,712...109,553,758
Ensembl chr  X:104,665,345...104,765,268
JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103
JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:118,977,594...119,050,894
Ensembl chr 5:113,867,092...113,934,830
JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:28,083,902...28,093,491
Ensembl chr 8:19,807,766...19,817,321
JBrowse link
G Atg5 autophagy related 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Atg7 autophagy related 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G Atg9a autophagy related 9A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:84,126,071...84,136,723
Ensembl chr 9:76,677,404...76,687,986
JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:17,948,522...18,012,434
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Snx30 sorting nexin family member 30 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:74,683,902...74,813,013
Ensembl chr 5:74,684,015...74,792,631
JBrowse link
G Snx7 sorting nexin 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:205,843,164...205,927,737
Ensembl chr 2:205,842,837...205,927,763
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:46,951,038...47,029,844
Ensembl chr10:46,454,030...46,530,407
JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:66,888,820...66,895,380
Ensembl chr 8:57,992,723...57,999,467
JBrowse link
positive regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag3 BAG cochaperone 3 involved_in ISO (PMID:18006506) RGD PMID:18006506 NCBI chr 1:192,533,460...192,557,281
Ensembl chr 1:183,102,871...183,126,858
JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:22017874)
UniProt
RGD
PMID:22017874 GO_REF:0000024 NCBI chr 3:161,170,295...161,217,073
Ensembl chr 3:140,709,991...140,756,696
JBrowse link
G Hspb8 heat shock protein family B (small) member 8 involved_in ISO (PMID:18006506) RGD PMID:18006506 NCBI chr12:40,176,405...40,205,002
Ensembl chr12:40,176,532...40,191,185
JBrowse link
G Htt huntingtin involved_in IEA
ISO
GO_REF:0000107
(PMID:25686248)
Ensembl
RGD
PMID:25686248 GO_REF:0000107 NCBI chr14:80,070,456...80,219,668
Ensembl chr14:75,845,836...75,995,070
JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in IEA
ISO
GO_REF:0000107
(PMID:31857589)
Ensembl
RGD
PMID:31857589 GO_REF:0000107 NCBI chr 1:212,325,089...212,332,640
Ensembl chr 1:202,895,751...202,903,458
JBrowse link
G Zdhhc19 zinc finger DHHC-type palmitoyltransferase 19 involved_in ISO (PMID:37802024) RGD PMID:37802024 NCBI chr11:68,277,847...68,289,110
Ensembl chr11:68,277,848...68,288,954
JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028769.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Atg2a autophagy related 2A involved_in ISO (PMID:30952800), (PMID:31271352) RGD PMID:30952800 PMID:31271352 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
JBrowse link
G Atg7 autophagy related 7 IMP RGD PMID:33372336 RGD:407571673 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G Becn1 beclin 1 IMP RGD PMID:25561470 RGD:11561937 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO (PMID:21072319) RGD PMID:21072319 NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:196,091,646...196,168,716
JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO (PMID:25484098) RGD PMID:25484098 NCBI chr 3:36,621,042...36,661,932
Ensembl chr 3:16,223,367...16,264,154
JBrowse link
G Moap1 modulator of apoptosis 1 involved_in ISO (PMID:33783314) RGD PMID:33783314 NCBI chr 6:121,882,565...121,884,500
Ensembl chr 6:121,882,366...121,898,643
Ensembl chr17:121,882,366...121,898,643
JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO
IEA
(PMID:25578879)
GO_REF:0000107
RGD
Ensembl
PMID:25578879 GO_REF:0000107 NCBI chr17:81,496,669...81,668,180
Ensembl chr17:81,496,670...81,668,029
JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO
IEA
(PMID:25578879)
GO_REF:0000107
RGD
Ensembl
PMID:25578879 GO_REF:0000107 NCBI chr10:82,706,016...82,734,938
Ensembl chr10:82,701,098...82,734,938
JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in ISO
IEA
(PMID:25578879)
GO_REF:0000107
RGD
Ensembl
PMID:25578879 GO_REF:0000107 NCBI chr 7:64,905,322...64,920,380
Ensembl chr 7:63,020,000...63,035,078
JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
ISS
IEA
IBA
(PMID:25495476)
GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
RGD
GO_Central
Ensembl
PMID:25495476 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr13:39,355,698...39,429,154
Ensembl chr13:39,352,247...39,429,169
JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:25495476)
GO_REF:0000107
GO_Central
RGD
Ensembl
PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr13:96,757,430...96,828,930
Ensembl chr13:96,757,460...96,829,478
JBrowse link
G Ralb RAS like proto-oncogene B involved_in ISO
IEA
(PMID:24056301)
GO_REF:0000107
RGD
Ensembl
PMID:24056301 GO_REF:0000107 NCBI chr13:33,140,834...33,176,997
Ensembl chr13:30,588,033...30,624,202
JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 involved_in ISO
IEA
(PMID:21068542)
GO_REF:0000107
RGD
Ensembl
PMID:21068542 GO_REF:0000107 NCBI chr 2:233,750,838...233,784,817
Ensembl chr 2:233,750,838...233,784,784
JBrowse link
G Snx18 sorting nexin 18 involved_in ISO (PMID:29437695) RGD PMID:29437695 NCBI chr 2:45,232,325...45,258,345
Ensembl chr 2:45,232,325...45,258,345
JBrowse link
G Snx30 sorting nexin family member 30 involved_in ISO (PMID:32513819) RGD PMID:32513819 NCBI chr 5:74,683,902...74,813,013
Ensembl chr 5:74,684,015...74,792,631
JBrowse link
G Snx4 sorting nexin 4 involved_in ISO
IBA
(PMID:32513819), (PMID:33468622)
GO_REF:0000033
RGD
GO_Central
PMID:32513819 PMID:33468622 GO_REF:0000033 NCBI chr11:67,460,872...67,518,143
Ensembl chr11:67,460,870...67,518,174
JBrowse link
G Snx7 sorting nexin 7 involved_in ISO (PMID:32513819) RGD PMID:32513819 NCBI chr 2:205,843,164...205,927,737
Ensembl chr 2:205,842,837...205,927,763
JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 5:84,020,604...84,031,483
Ensembl chr 5:78,999,389...79,022,018
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 IMP RGD PMID:23448468 RGD:13208863 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
ISS
IEA
(PMID:31271352)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:31271352 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:14,776,293...14,782,202
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:31271352) RGD PMID:31271352 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:94,542,946...94,579,846
JBrowse link
positive regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 involved_in ISO
IEA
ISS
(PMID:23708524)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
GO_Central
PMID:23708524 GO_REF:0000024 GO_REF:0000107 NCBI chr18:57,912,760...57,914,802
Ensembl chr18:55,502,903...55,644,512
JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 involved_in ISO (PMID:25771791) RGD PMID:25771791 NCBI chr10:81,552,084...81,568,266 JBrowse link
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO MGI:5648633 (PMID:24949970) RGD PMID:24949970 NCBI chr10:5,434,725...5,631,246
Ensembl chr10:4,928,030...5,123,578
JBrowse link
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in ISO
IBA
(PMID:26468287)
GO_REF:0000033
RGD
GO_Central
PMID:26468287 GO_REF:0000033 NCBI chr 8:132,289,538...132,356,810
Ensembl chr 8:123,412,112...123,479,021
JBrowse link
G Irgm immunity-related GTPase M involved_in ISO (PMID:16888103) RGD PMID:16888103 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,233,455...33,241,578
JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:45,957,146...45,968,388
Ensembl chr10:45,457,605...45,468,876
JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:23023224) RGD PMID:23023224 NCBI chr19:13,411,227...13,446,129
Ensembl chr19:13,405,501...13,440,384
JBrowse link
positive regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elavl1 ELAV like RNA binding protein 1 IMP RGD PMID:33372336 RGD:407571673 NCBI chr12:7,441,699...7,482,625
Ensembl chr12:2,645,061...2,684,784
JBrowse link
positive regulation of autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Znrf1 zinc and ring finger 1 involved_in ISO FB:FBgn0029911 (PMID:38360932) RGD PMID:38360932 NCBI chr19:56,403,816...56,490,901
Ensembl chr19:39,496,527...39,580,969
JBrowse link
G Znrf2 zinc and ring finger 2 involved_in ISO FB:FBgn0029911 (PMID:38360932) RGD PMID:38360932 NCBI chr 4:85,274,626...85,358,083
Ensembl chr 4:83,949,309...84,027,818
JBrowse link
positive regulation of lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:23708524)
GO_REF:0000107
GO_Central
RGD
Ensembl
PMID:23708524 GO_REF:0000024 GO_REF:0000107 NCBI chr18:57,912,760...57,914,802
Ensembl chr18:55,502,903...55,644,512
JBrowse link
G Htt huntingtin involved_in ISO
IEA
(PMID:25686248)
GO_REF:0000107
RGD
Ensembl
PMID:25686248 GO_REF:0000107 NCBI chr14:80,070,456...80,219,668
Ensembl chr14:75,845,836...75,995,070
JBrowse link
G Sesn2 sestrin 2 acts_upstream_of_or_within ISO MGI:3587950 (PMID:22958918) RGD PMID:22958918 NCBI chr 5:149,986,304...150,005,255
Ensembl chr 5:144,701,530...144,721,260
JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 acts_upstream_of_or_within ISO (PMID:25332431) RGD PMID:25332431 NCBI chr17:11,877,249...11,916,295
Ensembl chr17:11,877,249...11,916,295
JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:25332431)
GO_REF:0000107
RGD
Ensembl
PMID:25332431 GO_REF:0000107 NCBI chr 6:112,679,623...112,762,470
Ensembl chr 6:106,950,949...107,031,542
JBrowse link
positive regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip3 BCL2 interacting protein 3 acts_upstream_of_or_within ISO UniProtKB:O60238 (PMID:19273585) RGD PMID:19273585 NCBI chr 1:203,137,778...203,154,962
Ensembl chr 1:193,708,167...193,725,359
JBrowse link
G Bnip3l BCL2 interacting protein 3 like acts_upstream_of_or_within ISO UniProtKB:Q12983 (PMID:19273585) RGD PMID:19273585 NCBI chr15:45,350,081...45,373,213
Ensembl chr15:41,174,594...41,197,803
JBrowse link
G Dcn decorin acts_upstream_of_or_within
involved_in
ISO
IEA
UniProtKB:P35968 (PMID:23798385)
GO_REF:0000107
RGD
Ensembl
PMID:23798385 GO_REF:0000107 NCBI chr 7:34,167,973...34,208,004
Ensembl chr 7:32,281,252...32,321,270
JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:20453062)
MGI:102548|MGI:2182627 (PMID:20453062)
GO_REF:0000107
RGD
Ensembl
PMID:20453062 GO_REF:0000107 NCBI chr 1:7,547,369...7,673,449
Ensembl chr 1:5,727,066...5,920,555
JBrowse link
G Gnai3 G protein subunit alpha i3 involved_in ISO
IEA
(PMID:12642577)
GO_REF:0000107
RGD
Ensembl
PMID:12642577 GO_REF:0000107 NCBI chr 2:198,430,920...198,468,874
Ensembl chr 2:195,742,642...195,780,742
JBrowse link
G Gpsm1 G-protein signaling modulator 1 involved_in ISO (PMID:12642577) RGD PMID:12642577 NCBI chr 3:29,538,929...29,565,921
Ensembl chr 3:9,128,636...9,167,827
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:2386679 (PMID:19273585)
GO_REF:0000107
RGD
Ensembl
PMID:19273585 GO_REF:0000107 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Hmox1 heme oxygenase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2429784 (PMID:20705711)
Ensembl
RGD
PMID:20705711 GO_REF:0000107 NCBI chr19:13,452,365...13,479,823
Ensembl chr19:13,467,244...13,474,079
JBrowse link
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma involved_in ISO (PMID:23778976) RGD PMID:23778976 NCBI chr  X:157,358,279...157,397,563
Ensembl chr  X:152,216,596...152,239,499
JBrowse link
G Il4 interleukin 4 involved_in ISS
ISO
GO_REF:0000024
(PMID:26416964)
UniProt
RGD
PMID:26416964 GO_REF:0000024 NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
JBrowse link
G Kdr kinase insert domain receptor acts_upstream_of_or_within
involved_in
ISO
IEA
UniProtKB:P07585 (PMID:23798385)
GO_REF:0000107
RGD
Ensembl
PMID:23798385 GO_REF:0000107 NCBI chr14:32,572,031...32,615,204
Ensembl chr14:32,217,871...32,261,018
JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator involved_in ISO (PMID:22354037) RGD PMID:22354037 NCBI chr10:42,691,833...42,746,816
Ensembl chr10:42,191,325...42,243,371
JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 involved_in ISO (PMID:23778976) RGD PMID:23778976 NCBI chr 5:51,149,524...51,212,012
Ensembl chr 5:46,357,931...46,415,597
JBrowse link
G Pafah1b2 platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 involved_in ISO (PMID:22354037) RGD PMID:22354037 NCBI chr 8:55,156,778...55,208,800
Ensembl chr 8:46,261,064...46,279,833
JBrowse link
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase acts_upstream_of_or_within ISO (PMID:17476689) RGD PMID:17476689 NCBI chr  X:17,289,509...17,294,778
Ensembl chr  X:14,617,582...14,622,851
JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:20871098) RGD PMID:20871098 NCBI chr 5:155,813,838...155,825,950
Ensembl chr 5:150,530,523...150,542,635
JBrowse link
G Rab12 RAB12, member RAS oncogene family involved_in ISO (PMID:23357852) RGD PMID:23357852 NCBI chr 9:113,927,119...113,953,722
Ensembl chr 9:106,480,301...106,506,910
JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISO
IEA
ISS
UniProtKB:Q96DA2 (PMID:27103069), (PMID:27334615)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:27103069 PMID:27334615 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:54,562,570...54,587,649
Ensembl chr 5:49,766,325...49,791,408
JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in ISO
IBA
(PMID:26416964)
GO_REF:0000033
RGD
GO_Central
PMID:26416964 GO_REF:0000033 NCBI chr 9:75,702,937...75,727,719
Ensembl chr 9:75,703,750...75,723,525
JBrowse link
G Scoc short coiled-coil protein involved_in ISO
ISS
(PMID:22354037)
GO_REF:0000024
RGD
GO_Central
PMID:22354037 GO_REF:0000024 NCBI chr19:24,659,651...24,689,237
Ensembl chr19:24,659,651...24,693,217
JBrowse link
G Sesn1 sestrin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:46,876,918...46,970,010
Ensembl chr20:45,294,871...45,387,697
JBrowse link
G Sesn2 sestrin 2 involved_in ISO
IBA
(PMID:23274085)
GO_REF:0000033
RGD
GO_Central
PMID:23274085 GO_REF:0000033 NCBI chr 5:149,986,304...150,005,255
Ensembl chr 5:144,701,530...144,721,260
JBrowse link
G Sesn3 sestrin 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:19,415,307...19,470,943
Ensembl chr 8:11,133,678...11,185,842
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO
IEA
(PMID:18296641)
GO_REF:0000107
(PMID:18296641), (PMID:21189328)
RGD
Ensembl
PMID:18296641 PMID:21189328 GO_REF:0000107 NCBI chr20:25,305,953...25,328,000
Ensembl chr20:25,306,917...25,329,260
JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in ISS
ISO
IBA
IEA
GO_REF:0000024
(PMID:30568238)
GO_REF:0000033
(PMID:30568238), (PMID:30842662), (PMID:37535724)
GO_REF:0000107
UniProt
RGD
GO_Central
Ensembl
PMID:30568238 PMID:30842662 PMID:37535724 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr18:27,606,196...27,612,544
Ensembl chr18:27,332,119...27,338,335
JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit involved_in ISO (PMID:22354037) RGD PMID:22354037 NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892
JBrowse link
G Tbk1 TANK-binding kinase 1 involved_in ISO (PMID:27103069) RGD PMID:27103069 NCBI chr 7:58,963,319...58,996,357
Ensembl chr 7:57,077,830...57,110,892
JBrowse link
G Trim13 tripartite motif-containing 13 involved_in ISO
IBA
IEA
(PMID:22178386)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:22178386 GO_REF:0000033 GO_REF:0000107 NCBI chr15:39,909,587...39,948,719
Ensembl chr15:35,734,107...35,772,677
JBrowse link
G Tsc1 TSC complex subunit 1 IDA RGD PMID:23435171 RGD:10448950 NCBI chr 3:32,367,434...32,416,565
Ensembl chr 3:11,979,729...12,015,674
JBrowse link
G Tsc2 TSC complex subunit 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:23778976)
(PMID:20453062)
UniProtKB:Q61037 (PMID:23778976)
Ensembl
RGD
PMID:20453062 PMID:23778976 GO_REF:0000107 NCBI chr10:14,125,679...14,160,317
Ensembl chr10:13,621,136...13,655,951
JBrowse link
G Wac WW domain containing adaptor with coiled-coil involved_in ISO (PMID:22354037) RGD PMID:22354037 NCBI chr17:60,617,702...60,677,771
Ensembl chr17:55,923,123...55,982,301
JBrowse link
G Wdr24 WD repeat domain 24 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:15,346,835...15,353,384
Ensembl chr10:14,843,728...14,848,864
JBrowse link
positive regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO (PMID:30217973) RGD PMID:30217973 NCBI chr 3:98,156,626...98,345,876
Ensembl chr 3:77,700,936...77,890,221
JBrowse link
G Atg7 autophagy related 7 IMP RGD PMID:37042059 RGD:407532700 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G Cers1 ceramide synthase 1 involved_in ISO (PMID:22922758) RGD PMID:22922758 NCBI chr16:19,097,309...19,112,519
Ensembl chr16:19,104,466...19,112,519
JBrowse link
G Dele1 DAP3 binding cell death enhancer 1 involved_in ISO (PMID:38340717) RGD PMID:38340717 NCBI chr18:30,085,093...30,098,105
Ensembl chr18:30,085,126...30,098,756
JBrowse link
G Eif2ak1 eukaryotic translation initiation factor 2 alpha kinase 1 involved_in ISO
IEA
ISS
(PMID:38340717)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:38340717 GO_REF:0000024 GO_REF:0000107 NCBI chr12:15,824,431...15,858,266
Ensembl chr12:10,705,874...10,744,573
JBrowse link
G Fbxo7 F-box protein 7 involved_in IMP
ISO
PMID:26310625
(PMID:26310625)
RGD PMID:26310625 PMID:26310625 RGD:11536096 NCBI chr 7:19,696,951...19,725,180
Ensembl chr 7:17,809,231...17,837,530
JBrowse link
G Htt huntingtin involved_in IEA
ISO
GO_REF:0000107
(PMID:25686248)
Ensembl
RGD
PMID:25686248 GO_REF:0000107 NCBI chr14:80,070,456...80,219,668
Ensembl chr14:75,845,836...75,995,070
JBrowse link
G Irgm immunity-related GTPase M involved_in ISS
ISO
GO_REF:0000024
(PMID:33510463)
(PMID:21102437)
(PMID:32939830)
UniProt
RGD
PMID:21102437 PMID:32939830 PMID:33510463 GO_REF:0000024 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,233,455...33,241,578
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 involved_in ISO (PMID:31919280) RGD PMID:31919280 NCBI chr19:34,555,832...34,596,281
Ensembl chr19:18,382,439...18,417,177
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IMP
ISO
(PMID:26310625) RGD PMID:26310625 PMID:28608965 RGD:13432560 NCBI chr 1:51,236,410...52,430,242
Ensembl chr 1:48,690,556...49,882,555
JBrowse link
G Slc25a4 solute carrier family 25 member 4 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:31618756)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:31618756 GO_REF:0000024 GO_REF:0000107 NCBI chr16:52,805,521...52,809,316
Ensembl chr16:46,072,939...46,076,733
JBrowse link
G Slc25a5 solute carrier family 25 member 5 involved_in ISS
ISO
GO_REF:0000024
(PMID:31618756)
UniProt
RGD
PMID:31618756 GO_REF:0000024 NCBI chr  X:120,897,616...120,900,683
Ensembl chr  X:116,031,803...116,034,967
JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in IMP PMID:29934347 UniProt PMID:29934347 RGD:405650300 NCBI chr10:15,355,278...15,357,559
Ensembl chr10:14,850,765...14,853,046
JBrowse link
G Ube2a ubiquitin-conjugating enzyme E2A involved_in ISO (PMID:23685073) RGD PMID:23685073 NCBI chr  X:120,979,993...120,990,773
Ensembl chr  X:116,113,875...116,125,070
JBrowse link
G Vps13d vacuolar protein sorting 13 homolog D involved_in ISO (PMID:29307555) RGD PMID:29307555 NCBI chr 5:156,830,509...157,055,895
Ensembl chr 5:156,830,512...157,055,891
JBrowse link
positive regulation of reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 involved_in ISO
IEA
ISS
(PMID:32851973), (PMID:36543799)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:32851973 PMID:36543799 GO_REF:0000024 GO_REF:0000107 NCBI chr10:81,894,393...81,903,581
Ensembl chr10:81,894,393...81,903,590
JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:36543799) RGD PMID:36543799 NCBI chr 3:138,315,006...138,336,691
Ensembl chr 3:117,861,653...117,882,680
JBrowse link
G Ufl1 Ufm1-specific ligase 1 involved_in ISO
ISS
(PMID:36543799)
GO_REF:0000024
RGD
UniProt
PMID:36543799 GO_REF:0000024 NCBI chr 5:43,759,271...43,791,682
Ensembl chr 5:38,962,171...38,995,199
JBrowse link
positive regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5if1 ATP synthase inhibitory factor subunit 1 involved_in ISO (PMID:24005319) RGD PMID:24005319 NCBI chr 5:144,738,950...144,742,668
Ensembl chr 5:144,738,950...144,742,668
JBrowse link
G Cdc37 cell division cycle 37, HSP90 cochaperone involved_in ISO
IEA
(PMID:21855797)
GO_REF:0000107
RGD
Ensembl
PMID:21855797 GO_REF:0000107 NCBI chr 8:27,954,292...27,966,935
Ensembl chr 8:19,671,938...19,690,809
JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) RGD PMID:23707074 NCBI chr 2:176,902,141...176,916,015
Ensembl chr 2:174,609,403...174,618,263
JBrowse link
G Hdac6 histone deacetylase 6 involved_in ISO UniProtKB:Q9JK66 (PMID:20457763) RGD PMID:20457763 NCBI chr  X:17,222,538...17,244,373
Ensembl chr  X:14,551,044...14,572,441
JBrowse link
G Hk2 hexokinase 2 involved_in ISO (PMID:23962723) RGD PMID:23962723 NCBI chr 4:116,792,258...116,841,275
Ensembl chr 4:115,234,509...115,283,530
JBrowse link
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in ISO (PMID:30217973) RGD PMID:30217973 NCBI chr  X:24,350,708...24,480,798
Ensembl chr  X:20,873,795...21,001,262
JBrowse link
G Mul1 mitochondrial E3 ubiquitin protein ligase 1 involved_in ISO (PMID:24709290) RGD PMID:24709290 NCBI chr 5:155,936,112...155,945,163
Ensembl chr 5:150,652,812...150,661,863
JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:20871098) RGD PMID:20871098 NCBI chr 5:155,813,838...155,825,950
Ensembl chr 5:150,530,523...150,542,635
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO
IEA
(PMID:20457763), (PMID:20871098), (PMID:23212910)
GO_REF:0000107
RGD
Ensembl
PMID:20457763 PMID:20871098 PMID:23212910 GO_REF:0000107 NCBI chr 1:51,236,410...52,430,242
Ensembl chr 1:48,690,556...49,882,555
JBrowse link
G Tomm7 translocase of outer mitochondrial membrane 7 involved_in ISO (PMID:24270810) RGD PMID:24270810 NCBI chr 4:12,197,503...12,204,344
Ensembl chr 4:11,305,110...11,311,962
JBrowse link
G Vdac1 voltage-dependent anion channel 1 involved_in ISO (PMID:32047033) RGD PMID:32047033 NCBI chr10:37,029,377...37,060,542
Ensembl chr10:36,532,244...36,559,640
JBrowse link
positive regulation of xenophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irgm immunity-related GTPase M involved_in ISO (PMID:25891078) RGD PMID:25891078 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,233,455...33,241,578
JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO (PMID:23245322) RGD PMID:23245322 NCBI chr 3:36,621,042...36,661,932
Ensembl chr 3:16,223,367...16,264,154
JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO MGI:1346858 (PMID:22033934) RGD PMID:22033934 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:181,366,637...181,372,863
JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 acts_upstream_of_or_within ISO MGI:2674231 (PMID:22033934) RGD PMID:22033934 NCBI chr 4:85,391,142...85,442,281
Ensembl chr 4:84,060,880...84,111,404
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 acts_upstream_of_or_within ISO MGI:3529594 (PMID:22033934) RGD PMID:22033934 NCBI chr19:34,555,832...34,596,281
Ensembl chr19:18,382,439...18,417,177
JBrowse link
G Optn optineurin involved_in ISO
IEA
(PMID:21617041)
GO_REF:0000107
RGD
Ensembl
PMID:21617041 GO_REF:0000107 NCBI chr17:78,118,847...78,169,543
Ensembl chr17:73,209,575...73,260,251
JBrowse link
G Ripk2 receptor-interacting serine-threonine kinase 2 acts_upstream_of_or_within ISO MGI:2660793 (PMID:22033934) RGD PMID:22033934 NCBI chr 5:34,428,573...34,459,808
Ensembl chr 5:29,631,570...29,662,657
JBrowse link
G Rnf31 ring finger protein 31 involved_in ISO (PMID:28481331) RGD PMID:28481331 NCBI chr15:33,053,450...33,065,285
Ensembl chr15:29,083,631...29,101,915
JBrowse link
G Tbk1 TANK-binding kinase 1 involved_in ISO (PMID:21617041) RGD PMID:21617041 NCBI chr 7:58,963,319...58,996,357
Ensembl chr 7:57,077,830...57,110,892
JBrowse link
G Tlr2 toll-like receptor 2 acts_upstream_of_or_within ISO MGI:2674036 (PMID:22033934) RGD PMID:22033934 NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:169,197,419...169,206,630
JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within ISO (PMID:24954904) RGD PMID:24954904 NCBI chr 9:95,869,839...95,905,354
Ensembl chr 9:88,422,038...88,457,529
JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within ISO (PMID:23918802) RGD PMID:23918802 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Irgm immunity-related GTPase M involved_in ISO (PMID:28389568) RGD PMID:28389568 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,233,455...33,241,578
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (PMID:24954904) RGD PMID:24954904 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:11,911,337...11,939,794
JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfip2 ARF interacting protein 2 involved_in ISO
ISS
(PMID:33773106)
GO_REF:0000024
RGD
UniProt
PMID:33773106 GO_REF:0000024 NCBI chr 1:169,387,484...169,392,290
Ensembl chr 1:159,974,201...159,980,336
JBrowse link
G Atg13 autophagy related 13 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:98,102,831...98,136,741
Ensembl chr 3:77,645,790...77,681,043
JBrowse link
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within ISO PR:Q80W47 (PMID:24954904) RGD PMID:24954904 NCBI chr 9:95,869,839...95,905,354
Ensembl chr 9:88,422,038...88,457,529
JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IEA
(PMID:33773106)
GO_REF:0000107
RGD
Ensembl
PMID:33773106 GO_REF:0000107 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103
JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISO (PMID:33773106) RGD PMID:33773106 NCBI chr 8:28,083,902...28,093,491
Ensembl chr 8:19,807,766...19,817,321
JBrowse link
G Atg9a autophagy related 9A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:84,126,071...84,136,723
Ensembl chr 9:76,677,404...76,687,986
JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651
JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) RGD PMID:33773106 NCBI chr 2:173,919,330...174,500,536
Ensembl chr 2:171,621,507...172,202,724
JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23455425)
GO_REF:0000107
RGD
Ensembl
PMID:23455425 GO_REF:0000107 NCBI chr 5:163,587,463...163,617,363
Ensembl chr 5:158,304,287...158,335,342
JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 6:137,918,040...137,977,767
Ensembl chr 6:132,096,901...132,154,583
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:24098492)
Ensembl
RGD
PMID:24098492 GO_REF:0000107 NCBI chr18:22,119,677...22,203,546
Ensembl chr18:21,845,295...21,929,048
JBrowse link
G Stx17 syntaxin 17 acts_upstream_of_or_within ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 5:67,241,673...67,302,228
Ensembl chr 5:62,446,187...62,504,451
JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:14,776,293...14,782,202
JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:94,542,946...94,579,846
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in
acts_upstream_of_or_within
ISO
IBA
ISS
(PMID:28561066)
PR:Q8C0J2 (PMID:24954904)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:24954904 PMID:28561066 GO_REF:0000024 GO_REF:0000033 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:11,911,337...11,939,794
JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chek2 checkpoint kinase 2 involved_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr12:51,448,838...51,481,159
Ensembl chr12:45,788,827...45,821,286
JBrowse link
G Efnb1 ephrin B1 involved_in
acts_upstream_of_positive_effect
IEA
ISO
GO_REF:0000107
(PMID:33280498)
Ensembl
RGD
PMID:33280498 GO_REF:0000107 NCBI chr  X:68,297,529...68,310,335
Ensembl chr  X:64,257,351...64,270,157
JBrowse link
G Ephb2 Eph receptor B2 acts_upstream_of_positive_effect ISO (PMID:33280498) RGD PMID:33280498 NCBI chr 5:154,179,065...154,360,459
Ensembl chr 5:148,897,246...149,077,059
JBrowse link
G Ift20 intraflagellar transport 20 involved_in ISO (PMID:24089209) RGD PMID:24089209 NCBI chr10:63,930,629...63,936,174
Ensembl chr10:63,432,633...63,438,124
JBrowse link
G Ift88 intraflagellar transport 88 involved_in ISO (PMID:24089209) RGD PMID:24089209 NCBI chr15:35,685,678...35,786,875
Ensembl chr15:31,573,376...31,672,147
JBrowse link
G Mtmr3 myotubularin related protein 3 involved_in IEA
ISO
GO_REF:0000107
(PMID:25578879)
Ensembl
RGD
PMID:25578879 GO_REF:0000107 NCBI chr14:79,340,523...79,460,947
Ensembl chr14:79,340,513...79,461,041
JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO
IEA
(PMID:23524951)
GO_REF:0000107
RGD
Ensembl
PMID:23524951 GO_REF:0000107 NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:158,884,804...158,994,311
JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO (PMID:25578879) RGD PMID:25578879 NCBI chr 9:66,563,747...66,657,873
Ensembl chr 9:66,563,727...66,657,868
JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in ISO (PMID:20545908) RGD PMID:20545908 NCBI chr 1:211,835,133...211,843,408
Ensembl chr 1:202,405,759...202,413,868
Ensembl chr  X:202,405,759...202,413,868
JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISO
IEA
ISS
(PMID:27334615)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:27334615 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:54,562,570...54,587,649
Ensembl chr 5:49,766,325...49,791,408
JBrowse link
G Rnf186 ring finger protein 186 acts_upstream_of_positive_effect ISO (PMID:33280498) RGD PMID:33280498 NCBI chr 5:151,210,492...151,211,716
Ensembl chr 5:151,210,492...151,211,716
JBrowse link
G Rnf5 ring finger protein 5 acts_upstream_of_or_within ISO MGI:3775796 (PMID:23093945) RGD PMID:23093945 NCBI chr20:4,150,032...4,152,593
Ensembl chr20:4,145,507...4,147,985
JBrowse link
G Tbc1d12 TBC1 domain family, member 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:236,603,597...236,685,859
Ensembl chr 1:236,603,607...236,685,859
JBrowse link
G Tbc1d14 TBC1 domain family, member 14 involved_in ISO
IBA
IEA
(PMID:22613832)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:22613832 GO_REF:0000033 GO_REF:0000107 NCBI chr14:74,172,652...74,272,182
Ensembl chr14:74,172,664...74,272,183
JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO (PMID:20529957) RGD PMID:20529957 NCBI chr  X:21,228,809...21,232,228
Ensembl chr  X:17,853,114...17,856,505
JBrowse link
regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in ISO (PMID:22342342) RGD PMID:22342342 NCBI chr18:41,638,841...41,649,311
Ensembl chr18:39,452,191...39,462,418
JBrowse link
G Atg5 autophagy related 5 involved_in ISO
IEA
(PMID:22342342)
GO_REF:0000107
RGD
Ensembl
PMID:22342342 GO_REF:0000107 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Clec16a C-type lectin domain containing 16A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:5,434,725...5,631,246
Ensembl chr10:4,928,030...5,123,578
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:26450516) RGD PMID:26450516 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
JBrowse link
G Tbc1d25 TBC1 domain family, member 25 involved_in ISO
IBA
(PMID:21383079)
GO_REF:0000033
RGD
GO_Central
PMID:21383079 GO_REF:0000033 NCBI chr  X:16,986,629...17,010,228
Ensembl chr  X:14,314,414...14,338,275
JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISO (PMID:22342342) RGD PMID:22342342 NCBI chr12:10,391,587...10,420,462
Ensembl chr12:10,391,696...10,419,611
JBrowse link
regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in IMP
IBA
ISO
GO_REF:0000033
(PMID:22186024)
GO_Central
RGD
PMID:22186024 PMID:22186024 GO_REF:0000033, RGD:13442482 NCBI chr 5:158,575,727...158,595,157
Ensembl chr 5:153,292,751...153,312,139
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:25878248) RGD PMID:25878248 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
JBrowse link
G Dnajc16 DnaJ heat shock protein family (Hsp40) member C16 involved_in ISS
ISO
GO_REF:0000024
(PMID:32492081)
UniProt
RGD
PMID:32492081 GO_REF:0000024 NCBI chr 5:159,355,279...159,389,267
Ensembl chr 5:154,075,261...154,106,136
JBrowse link
regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 involved_in ISO (PMID:10625637) RGD PMID:10625637 NCBI chr15:23,275,457...23,306,817
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:22198378) RGD PMID:22198378 NCBI chr 5:158,575,727...158,595,157
Ensembl chr 5:153,292,751...153,312,139
JBrowse link
G Atp6v0a1 ATPase H+ transporting V0 subunit a1 involved_in ISO
IEA
(PMID:22982048)
GO_REF:0000107
RGD
Ensembl
PMID:22982048 GO_REF:0000107 NCBI chr10:86,436,089...86,490,185
Ensembl chr10:85,935,854...85,989,895
JBrowse link
G Becn1 beclin 1 involved_in ISO (PMID:10625637) RGD PMID:10625637 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Hdac6 histone deacetylase 6 involved_in ISO (PMID:16192271) RGD PMID:16192271 NCBI chr  X:17,222,538...17,244,373
Ensembl chr  X:14,551,044...14,572,441
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in ISO
IEA
(PMID:10625637)
GO_REF:0000107
RGD
Ensembl
PMID:10625637 GO_REF:0000107 NCBI chr18:22,119,677...22,203,546
Ensembl chr18:21,845,295...21,929,048
JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 involved_in ISO (PMID:10625637) RGD PMID:10625637 NCBI chr 8:115,146,660...115,195,326
Ensembl chr 8:106,267,954...106,316,584
JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:23332761)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23332761 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:125,036,945...125,109,010
Ensembl chr 5:119,813,226...119,879,543
JBrowse link
G Ubqln1 ubiquilin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:6,438,456...6,482,498
Ensembl chr17:6,439,002...6,477,090
JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO
IBA
(PMID:20529957)
GO_REF:0000033
RGD
GO_Central
PMID:20529957 GO_REF:0000033 NCBI chr  X:21,228,809...21,232,228
Ensembl chr  X:17,853,114...17,856,505
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO (PMID:20921139) RGD PMID:20921139 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:45,851,710...45,877,966
JBrowse link
regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy10 adenylate cyclase 10 IMP RGD PMID:31172217 RGD:329403053 NCBI chr13:80,280,595...80,366,939
Ensembl chr13:77,768,468...77,833,951
JBrowse link
G Bnip3l BCL2 interacting protein 3 like involved_in ISO UniProtKB:Q9Z2F7 (PMID:20200478) RGD PMID:20200478 NCBI chr15:45,350,081...45,373,213
Ensembl chr15:41,174,594...41,197,803
JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr19:9,562,340...9,602,136
Ensembl chr19:9,556,260...9,596,080
JBrowse link
G Cttn cortactin involved_in IEA
ISO
GO_REF:0000107
(PMID:20457763)
Ensembl
RGD
PMID:20457763 GO_REF:0000107 NCBI chr 1:209,029,048...209,064,577
Ensembl chr 1:199,599,710...199,635,164
JBrowse link
G Dnm1l dynamin 1-like involved_in ISO UniProtKB:Q9BXM7 (PMID:19279012) RGD PMID:19279012 NCBI chr11:98,084,049...98,135,663
Ensembl chr11:84,581,216...84,631,482
JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in ISO (PMID:24912190) RGD PMID:24912190 NCBI chr 2:172,447,738...172,609,591
Ensembl chr 2:170,149,694...170,309,941
JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 involved_in ISO (PMID:28381481), (PMID:31908024) RGD PMID:28381481 PMID:31908024 NCBI chr16:18,895,608...18,902,648
Ensembl chr16:18,893,576...18,902,612
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457
JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in IEA
ISO
GO_REF:0000107
(PMID:24912190)
Ensembl
RGD
PMID:24912190 GO_REF:0000107 NCBI chr 1:89,943,669...89,953,514
Ensembl chr 1:80,815,850...80,825,802
JBrowse link
G Parl presenilin associated, rhomboid-like involved_in ISO (PMID:21355049) RGD PMID:21355049 NCBI chr11:94,097,559...94,124,915
Ensembl chr11:80,593,192...80,620,506
JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 involved_in ISO (PMID:24912190) RGD PMID:24912190 NCBI chr10:45,507,152...45,529,164
Ensembl chr10:45,007,637...45,029,650
JBrowse link
G Srebf2 sterol regulatory element binding transcription factor 2 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr 7:115,542,774...115,600,945
Ensembl chr 7:113,663,202...113,720,848
JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr10:103,995,970...104,027,492
Ensembl chr10:103,497,349...103,528,877
JBrowse link
G Vdac1 voltage-dependent anion channel 1 involved_in ISO (PMID:25470454) RGD PMID:25470454 NCBI chr10:37,029,377...37,060,542
Ensembl chr10:36,532,244...36,559,640
JBrowse link
reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:130,286,979...130,357,109
Ensembl chr 6:124,525,523...124,592,015
JBrowse link
G Atg9a autophagy related 9A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:84,126,071...84,136,723
Ensembl chr 9:76,677,404...76,687,986
JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651
JBrowse link
G Bnip3 BCL2 interacting protein 3 involved_in ISO (PMID:22505714) RGD PMID:22505714 NCBI chr 1:203,137,778...203,154,962
Ensembl chr 1:193,708,167...193,725,359
JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:32160526) RGD PMID:32160526 NCBI chr 3:138,315,006...138,336,691
Ensembl chr 3:117,861,653...117,882,680
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2176173|MGI:3526069 (PMID:31006538)
GO_Central
RGD
PMID:31006538 GO_REF:0000033 NCBI chr 5:17,948,522...18,012,434
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Retreg1 reticulophagy regulator 1 involved_in
acts_upstream_of_or_within
ISS
ISO
IBA
IEA
GO_REF:0000024
(PMID:26040720)
(PMID:34338405)
GO_REF:0000033
GO_REF:0000002
(PMID:26040720), (PMID:31930741)
GO_Central
RGD
InterPro
PMID:26040720 PMID:31930741 PMID:34338405 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 NCBI chr 2:78,045,435...78,205,316
Ensembl chr 2:76,335,609...76,493,898
JBrowse link
G Retreg2 reticulophagy regulator family member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:34338405)
Ensembl
RGD
PMID:34338405 GO_REF:0000107 NCBI chr 9:76,640,282...76,646,400
Ensembl chr 9:76,640,319...76,646,395
JBrowse link
G Retreg3 reticulophagy regulator family member 3 involved_in
acts_upstream_of_or_within
ISO (PMID:33826365)
(PMID:34338405)
RGD PMID:33826365 PMID:34338405 NCBI chr10:86,529,048...86,552,873
Ensembl chr10:86,028,774...86,052,692
JBrowse link
G Snx30 sorting nexin family member 30 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:74,683,902...74,813,013
Ensembl chr 5:74,684,015...74,792,631
JBrowse link
G Snx7 sorting nexin 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:205,843,164...205,927,737
Ensembl chr 2:205,842,837...205,927,763
JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in ISS
ISO
IBA
GO_REF:0000024
(PMID:29056340)
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:29056340 GO_REF:0000024 GO_REF:0000033 NCBI chr18:27,606,196...27,612,544
Ensembl chr18:27,332,119...27,338,335
JBrowse link
G Tex264 testis expressed 264 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:31006537), (PMID:31006538)
GO_REF:0000033
(PMID:31006538)
RGD
GO_Central
PMID:31006537 PMID:31006538 GO_REF:0000033 NCBI chr 8:116,174,517...116,201,578
Ensembl chr 8:107,295,806...107,323,232
JBrowse link
G Uba5 ubiquitin-like modifier activating enzyme 5 involved_in ISO
ISS
(PMID:32160526)
GO_REF:0000024
RGD
UniProt
PMID:32160526 GO_REF:0000024 NCBI chr 8:113,544,037...113,559,711
Ensembl chr 8:104,665,046...104,680,894
JBrowse link
G Ufc1 ubiquitin-fold modifier conjugating enzyme 1 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:32160526)
UniProt
GO_Central
RGD
PMID:32160526 GO_REF:0000024 GO_REF:0000033 NCBI chr13:86,241,779...86,280,513
Ensembl chr13:83,709,330...83,716,076
JBrowse link
G Ufl1 Ufm1-specific ligase 1 involved_in ISO
IBA
ISS
(PMID:32160526)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:32160526 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:43,759,271...43,791,682
Ensembl chr 5:38,962,171...38,995,199
JBrowse link
G Ufm1 ubiquitin-fold modifier 1 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:32160526)
UniProt
GO_Central
RGD
PMID:32160526 GO_REF:0000024 GO_REF:0000033 NCBI chr 2:140,119,722...140,127,866
Ensembl chr 2:137,966,678...137,978,089
Ensembl chr 2:137,966,678...137,978,089
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:46,951,038...47,029,844
Ensembl chr10:46,454,030...46,530,407
JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:66,888,820...66,895,380
Ensembl chr 8:57,992,723...57,999,467
JBrowse link
ribophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Armc3 armadillo repeat containing 3 involved_in ISO (PMID:34428398) RGD PMID:34428398 NCBI chr17:81,814,087...81,917,534
Ensembl chr17:81,832,518...81,917,531
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:17,948,522...18,012,434
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irgq immunity-related GTPase Q involved_in ISO (PMID:39481378) RGD PMID:39481378 NCBI chr 1:80,123,925...80,131,881
Ensembl chr 1:80,123,925...80,131,881
JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:14,748,717...14,840,273
Ensembl chr12:9,635,025...9,726,519
JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO MGI:6356543 (PMID:20810658), (PMID:27358407) RGD PMID:20810658 PMID:27358407 NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,469,582...15,477,443
JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:23023224) RGD PMID:23023224 NCBI chr19:13,411,227...13,446,129
Ensembl chr19:13,405,501...13,440,384
JBrowse link
type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac6 histone deacetylase 6 involved_in ISO UniProtKB:Q9JK66|UniProtKB:Q9Z2V5 (PMID:20457763) RGD PMID:20457763 NCBI chr  X:17,222,538...17,244,373
Ensembl chr  X:14,551,044...14,572,441
JBrowse link
G Mfn2 mitofusin 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:23620051)
Ensembl
RGD
PMID:23620051 GO_REF:0000107 NCBI chr 5:163,587,463...163,617,363
Ensembl chr 5:158,304,287...158,335,342
JBrowse link
G Optn optineurin involved_in ISO
IEA
(PMID:25294927)
GO_REF:0000107
RGD
Ensembl
PMID:25294927 GO_REF:0000107 NCBI chr17:78,118,847...78,169,543
Ensembl chr17:73,209,575...73,260,251
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO
IEA
(PMID:19029340)
GO_REF:0000107
RGD
Ensembl
PMID:19029340 GO_REF:0000107 NCBI chr 1:51,236,410...52,430,242
Ensembl chr 1:48,690,556...49,882,555
JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:14,748,717...14,840,273
Ensembl chr12:9,635,025...9,726,519
JBrowse link
G Timm23 translocase of inner mitochondrial membrane 23 involved_in ISS
ISO
GO_REF:0000024
(PMID:37160114)
UniProt
RGD
PMID:37160114 GO_REF:0000024 NCBI chr16:7,410,308...7,436,392
Ensembl chr16:7,409,688...7,436,379
Ensembl chr 3:7,409,688...7,436,379
Ensembl chr 6:7,409,688...7,436,379
JBrowse link
xenophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within ISO PR:Q80W47 (PMID:24954904) RGD PMID:24954904 NCBI chr 9:95,869,839...95,905,354
Ensembl chr 9:88,422,038...88,457,529
JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 involved_in ISO (PMID:23022382), (PMID:25771791) RGD PMID:23022382 PMID:25771791 NCBI chr10:81,552,084...81,568,266 JBrowse link
G Lgals8 galectin 8 involved_in ISO
ISS
(PMID:22246324), (PMID:28077878)
GO_REF:0000024
RGD
GO_Central
PMID:22246324 PMID:28077878 GO_REF:0000024 NCBI chr17:62,716,368...62,744,272
Ensembl chr17:58,028,105...58,052,764
JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of ISO MGI:1346858 (PMID:22033934) RGD PMID:22033934 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:181,366,637...181,372,863
JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 acts_upstream_of ISO MGI:2674231 (PMID:22033934) RGD PMID:22033934 NCBI chr 4:85,391,142...85,442,281
Ensembl chr 4:84,060,880...84,111,404
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 acts_upstream_of ISO MGI:3529594 (PMID:22033934) RGD PMID:22033934 NCBI chr19:34,555,832...34,596,281
Ensembl chr19:18,382,439...18,417,177
JBrowse link
G Ripk2 receptor-interacting serine-threonine kinase 2 acts_upstream_of ISO MGI:2660793 (PMID:22033934) RGD PMID:22033934 NCBI chr 5:34,428,573...34,459,808
Ensembl chr 5:29,631,570...29,662,657
JBrowse link
G Rnf213 ring finger protein 213 involved_in ISO (PMID:34012115) RGD PMID:34012115 NCBI chr10:105,154,873...105,254,148
Ensembl chr10:104,656,883...104,757,918
JBrowse link
G Tlr2 toll-like receptor 2 acts_upstream_of ISO MGI:2674036 (PMID:22033934) RGD PMID:22033934 NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:169,197,419...169,206,630
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO PR:Q8C0J2 (PMID:24954904) RGD PMID:24954904 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:11,911,337...11,939,794
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      process utilizing autophagic mechanism 555
        autophagy 555
          macroautophagy 334
            aggrephagy + 18
            amphisome-lysosome fusion 0
            autophagosome maturation + 66
            autophagosome organization + 136
            autophagosome-endosome fusion 1
            autophagosome-lysosome fusion + 13
            glycophagy 12
            lipophagy + 8
            lysophagy 0
            mitophagy + 97
            negative regulation of macroautophagy + 37
            nucleophagy + 24
            pexophagy 16
            positive regulation of macroautophagy + 99
            proteaphagy 0
            regulation of macroautophagy + 152
            reticulophagy + 22
            ribophagy 2
            xenophagy + 15
Path 2
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      metabolic process 12160
        catabolic process 2919
          autophagy 555
            macroautophagy 334
              aggrephagy + 18
              amphisome-lysosome fusion 0
              autophagosome maturation + 66
              autophagosome organization + 136
              autophagosome-endosome fusion 1
              autophagosome-lysosome fusion + 13
              glycophagy 12
              lipophagy + 8
              lysophagy 0
              mitophagy + 97
              negative regulation of macroautophagy + 37
              nucleophagy + 24
              pexophagy 16
              positive regulation of macroautophagy + 99
              proteaphagy 0
              regulation of macroautophagy + 152
              reticulophagy + 22
              ribophagy 2
              xenophagy + 15
paths to the root