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ONTOLOGY REPORT - ANNOTATIONS


Term:synaptic vesicle priming
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Accession:GO:0016082 term browser browse the term
Definition:A process that converts synaptic vesicles to a state of competence for calcium triggered fusion with the active zone membrane by bringing the two membranes into very close proximity. Priming typically (but not always) occurs after docking (Jahn and Fasshauer, 2012). Primed vesicles are also capable of spontaneously fusing with the active zone membrane.
Comment:Although this process can occur outside of synaptic transmission, by convention we treat it as a part of synaptic transmission. (dos, pvn, fk synapse project 2015)



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synaptic vesicle priming term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cadps calcium dependent secretion activator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2443963 (PMID:21040848)
(PMID:18022372)
Ensembl
RGD
PMID:18022372 PMID:21040848 GO_REF:0000107 NCBI chr15:14,719,078...15,173,218
Ensembl chr15:12,290,262...12,742,779
JBrowse link
G Cadps2 calcium dependent secretion activator 2 acts_upstream_of_or_within
involved_in
ISO MGI:1350922 (PMID:21040848)
(PMID:25437547)
RGD PMID:21040848 PMID:25437547 NCBI chr 4:52,746,054...53,275,252
Ensembl chr 4:51,781,053...52,309,829
JBrowse link
G Efr3a EFR3 homolog A involved_in ISO (PMID:30867420) RGD PMID:30867420 NCBI chr 7:97,552,677...97,633,369
Ensembl chr 7:97,552,677...97,633,369
JBrowse link
G Erc1 ELKS/RAB6-interacting/CAST family member 1 involved_in ISO (PMID:27253063) RGD PMID:27253063 NCBI chr 4:154,435,936...154,727,987
Ensembl chr 4:152,767,419...153,055,639
JBrowse link
G Erc2 ELKS/RAB6-interacting/CAST family member 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:19874790), (PMID:27253063)
Ensembl
RGD
PMID:19874790 PMID:27253063 GO_REF:0000107 NCBI chr16:2,819,399...3,680,258
Ensembl chr16:2,848,620...3,670,776
JBrowse link
G Napa NSF attachment protein alpha involved_in IEA
ISO
GO_REF:0000107
(PMID:21040848)
Ensembl
RGD
PMID:21040848 GO_REF:0000107 NCBI chr 1:76,787,036...76,805,869
Ensembl chr 1:76,786,932...76,805,869
JBrowse link
G Otof otoferlin involved_in IBA
ISO
GO_REF:0000033
(PMID:20562868), (PMID:25609709)
GO_Central
RGD
PMID:20562868 PMID:25609709 GO_REF:0000033 NCBI chr 6:31,647,869...31,744,476
Ensembl chr 6:25,928,055...26,024,631
JBrowse link
G Rims1 regulating synaptic membrane exocytosis 1 involved_in ISO
IBA
(PMID:21262469), (PMID:22753485)
GO_REF:0000033
RGD
GO_Central
PMID:21262469 PMID:22753485 GO_REF:0000033 NCBI chr 9:32,193,352...32,692,998
Ensembl chr 9:24,698,854...25,196,631
JBrowse link
G Rims2 regulating synaptic membrane exocytosis 2 involved_in ISO
IBA
(PMID:21262469), (PMID:22753485)
GO_REF:0000033
RGD
GO_Central
PMID:21262469 PMID:22753485 GO_REF:0000033 NCBI chr 7:72,133,004...72,644,059
Ensembl chr 7:70,243,872...70,757,491
JBrowse link
G Rims3 regulating synaptic membrane exocytosis 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:139,714,302...139,754,145
Ensembl chr 5:134,435,829...134,640,489
JBrowse link
G Rph3a rabphilin 3A involved_in IEA
ISO
GO_REF:0000107
(PMID:16763567)
Ensembl
RGD
PMID:16763567 GO_REF:0000107 NCBI chr12:41,203,004...41,279,536
Ensembl chr12:35,542,728...35,617,592
JBrowse link
G Snap23 synaptosome associated protein 23 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:127,966,184...127,999,929
Ensembl chr 3:107,514,131...107,544,320
JBrowse link
G Snap25 synaptosome associated protein 25 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:144,494,579...144,576,449
Ensembl chr 3:124,041,898...124,123,760
JBrowse link
G Snap29 synaptosome associated protein 29 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:97,082,721...97,113,195
Ensembl chr11:83,578,489...83,608,958
JBrowse link
G Snap47 synaptosome associated protein 47 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:44,692,430...44,733,986
Ensembl chr10:44,191,218...44,234,424
JBrowse link
G Snca synuclein alpha involved_in ISO
IEA
(PMID:30404828)
GO_REF:0000107
RGD
Ensembl
PMID:30404828 GO_REF:0000107 NCBI chr 4:91,026,474...91,127,444
Ensembl chr 4:89,696,420...89,796,262
JBrowse link
G Stxbp1 syntaxin binding protein 1 involved_in ISO (PMID:17110441) RGD PMID:17110441 NCBI chr 3:36,474,428...36,536,120
Ensembl chr 3:16,076,391...16,138,369
JBrowse link
G Sv2a synaptic vesicle glycoprotein 2a involved_in ISO (PMID:19176798) RGD PMID:19176798 NCBI chr 2:183,741,489...183,757,290
Ensembl chr 2:183,741,547...183,756,927
JBrowse link
G Synj1 synaptojanin 1 acts_upstream_of_or_within ISO MGI:2179801 (PMID:12481038) RGD PMID:12481038 NCBI chr11:43,678,709...43,755,526
Ensembl chr11:30,192,629...30,269,220
JBrowse link
G Unc13a unc-13 homolog A involved_in IDA
IBA
ISO
GO_REF:0000033
(PMID:11832228)
GO_Central
RGD
PMID:11832228 PMID:21499244 GO_REF:0000033, RGD:5686389 NCBI chr16:18,367,891...18,415,808
Ensembl chr16:18,336,229...18,381,872
JBrowse link
G Unc13b unc-13 homolog B involved_in
acts_upstream_of_or_within
ISS
IMP
IBA
ISO
GO_REF:0000024
PMID:22966208
GO_REF:0000033
MGI:2449706 (PMID:12070347)
(PMID:11832228)
ParkinsonsUK-UCL
GO_Central
RGD
PMID:11832228 PMID:12070347 PMID:22966208 GO_REF:0000024 GO_REF:0000033, RGD:11535109 NCBI chr 5:62,084,809...62,299,884
Ensembl chr 5:57,289,227...57,502,926
JBrowse link
G Unc13c unc-13 homolog C involved_in IMP
IBA
PMID:22966208
GO_REF:0000033
GO_Central PMID:22966208 GO_REF:0000033, RGD:11535109 NCBI chr 8:83,127,650...83,553,822
Ensembl chr 8:74,247,899...74,673,223
JBrowse link
G Vamp1 vesicle-associated membrane protein 1 involved_in ISO (PMID:24944211) RGD PMID:24944211 NCBI chr 4:158,012,634...158,019,350
Ensembl chr 4:158,012,663...158,019,349
JBrowse link
positive regulation of synaptic vesicle priming term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rims1 regulating synaptic membrane exocytosis 1 involved_in IGI PMID:21262469 ParkinsonsUK-UCL PMID:21262469 RGD:10047275 NCBI chr 9:32,193,352...32,692,998
Ensembl chr 9:24,698,854...25,196,631
JBrowse link
G Unc13b unc-13 homolog B involved_in IGI PMID:21262469 ParkinsonsUK-UCL PMID:21262469 PMID:21262469 RGD:10047275, RGD:10047275 NCBI chr 5:62,084,809...62,299,884
Ensembl chr 5:57,289,227...57,502,926
JBrowse link
regulation of synaptic vesicle priming term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brsk1 BR serine/threonine kinase 1 involved_in IDA
IEP
IMP
PMID:16630837 SynGO PMID:16630837 PMID:16630837 PMID:16630837 RGD:8553864, RGD:8553864, RGD:8553864 NCBI chr 1:69,134,166...69,159,947
Ensembl chr 1:69,134,565...69,160,365
JBrowse link
G Napa NSF attachment protein alpha involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
MGI:104562 (PMID:21040848)
GO_REF:0000033
Ensembl
RGD
GO_Central
PMID:21040848 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:76,787,036...76,805,869
Ensembl chr 1:76,786,932...76,805,869
JBrowse link
G Napb NSF attachment protein beta involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
(PMID:21040848)
MGI:104563 (PMID:21040848)
GO_REF:0000033
Ensembl
RGD
GO_Central
PMID:21040848 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:156,585,394...156,632,418
Ensembl chr 3:136,133,428...136,179,345
JBrowse link
G Osbpl2 oxysterol binding protein-like 2 involved_in ISO (PMID:36577376) RGD PMID:36577376 NCBI chr 3:187,585,372...187,633,827
Ensembl chr 3:167,210,832...167,256,219
JBrowse link
G Rab3a RAB3A, member RAS oncogene family involved_in IDA PMID:21689256 UniProt PMID:21689256 RGD:14390056 NCBI chr16:18,718,164...18,722,273
Ensembl chr16:18,684,188...18,688,336
JBrowse link
G Stx1a syntaxin 1A involved_in ISO UniProtKB:O35526|UniProtKB:P61264 (PMID:24133272) RGD PMID:24133272 NCBI chr12:27,278,517...27,306,547
Ensembl chr12:21,641,969...21,669,930
JBrowse link
G Stx1b syntaxin 1B involved_in ISS
ISO
IEA
GO_REF:0000024
UniProtKB:O35526 (PMID:24133272)
GO_REF:0000107
ParkinsonsUK-UCL
RGD
Ensembl
PMID:24133272 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:191,846,016...191,864,878
Ensembl chr 1:182,415,546...182,441,280
JBrowse link
G Stxbp1 syntaxin binding protein 1 involved_in IMP
IDA
PMID:21689256 RGD
UniProt
PMID:19255244 PMID:21689256 RGD:2311128, RGD:14390056 NCBI chr 3:36,474,428...36,536,120
Ensembl chr 3:16,076,391...16,138,369
JBrowse link
G Stxbp5 syntaxin binding protein 5 involved_in IEA
ISO
GO_REF:0000107
(PMID:18936251)
Ensembl
RGD
PMID:18936251 GO_REF:0000107 NCBI chr 1:6,002,738...6,155,528
Ensembl chr 1:4,185,529...4,335,101
JBrowse link
G Syngr3 synaptogyrin 3 involved_in ISO (PMID:31090538) RGD PMID:31090538 NCBI chr10:14,215,088...14,219,844
Ensembl chr10:13,704,998...13,715,669
JBrowse link
G Syp synaptophysin involved_in ISO
IEA
(PMID:31090538)
GO_REF:0000107
RGD
Ensembl
PMID:31090538 GO_REF:0000107 NCBI chr  X:17,521,348...17,536,449
Ensembl chr  X:14,849,444...14,864,745
JBrowse link
G Unc13a unc-13 homolog A involved_in IDA PMID:21689256 UniProt PMID:21689256 RGD:14390056 NCBI chr16:18,367,891...18,415,808
Ensembl chr16:18,336,229...18,381,872
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20553
    cellular process 19543
      exocytic process 105
        synaptic vesicle priming 32
          negative regulation of synaptic vesicle priming 0
          positive regulation of synaptic vesicle priming 2
          regulation of synaptic vesicle priming + 14
Path 2
Term Annotations click to browse term
  biological_process 20553
    biological regulation 13833
      regulation of biological process 13387
        signaling 7822
          cell-cell signaling 1484
            synaptic signaling 1005
              trans-synaptic signaling 961
                anterograde trans-synaptic signaling 953
                  chemical synaptic transmission 953
                    neurotransmitter secretion 200
                      synaptic vesicle exocytosis 136
                        synaptic vesicle priming 32
                          negative regulation of synaptic vesicle priming 0
                          positive regulation of synaptic vesicle priming 2
                          regulation of synaptic vesicle priming + 14
paths to the root