ONTOLOGY REPORT - ANNOTATIONS
Term: synaptic vesicle priming
Accession: GO:0016082
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Definition: A process that converts synaptic vesicles to a state of competence for calcium triggered fusion with the active zone membrane by bringing the two membranes into very close proximity. Priming typically (but not always) occurs after docking (Jahn and Fasshauer, 2012). Primed vesicles are also capable of spontaneously fusing with the active zone membrane.
Comment: Although this process can occur outside of synaptic transmission, by convention we treat it as a part of synaptic transmission. (dos, pvn, fk synapse project 2015)
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Cadps
calcium dependent secretion activator
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2443963 (PMID:21040848) (PMID:18022372)
Ensembl RGD
PMID:18022372 PMID:21040848
GO_REF:0000107
NCBI chr15:14,719,078...15,173,218
Ensembl chr15:12,290,262...12,742,779
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Cadps2
calcium dependent secretion activator 2
acts_upstream_of_or_within involved_in
ISO
MGI:1350922 (PMID:21040848) (PMID:25437547)
RGD
PMID:21040848 PMID:25437547
NCBI chr 4:52,746,054...53,275,252
Ensembl chr 4:51,781,053...52,309,829
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Efr3a
EFR3 homolog A
involved_in
ISO
(PMID:30867420)
RGD
PMID:30867420
NCBI chr 7:97,552,677...97,633,369
Ensembl chr 7:97,552,677...97,633,369
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Erc1
ELKS/RAB6-interacting/CAST family member 1
involved_in
ISO
(PMID:27253063)
RGD
PMID:27253063
NCBI chr 4:154,435,936...154,727,987
Ensembl chr 4:152,767,419...153,055,639
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Erc2
ELKS/RAB6-interacting/CAST family member 2
involved_in
IEA ISO
GO_REF:0000107 (PMID:19874790), (PMID:27253063)
Ensembl RGD
PMID:19874790 PMID:27253063
GO_REF:0000107
NCBI chr16:2,819,399...3,680,258
Ensembl chr16:2,848,620...3,670,776
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Napa
NSF attachment protein alpha
involved_in
IEA ISO
GO_REF:0000107 (PMID:21040848)
Ensembl RGD
PMID:21040848
GO_REF:0000107
NCBI chr 1:76,787,036...76,805,869
Ensembl chr 1:76,786,932...76,805,869
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Otof
otoferlin
involved_in
IBA ISO
GO_REF:0000033 (PMID:20562868), (PMID:25609709)
GO_Central RGD
PMID:20562868 PMID:25609709
GO_REF:0000033
NCBI chr 6:31,647,869...31,744,476
Ensembl chr 6:25,928,055...26,024,631
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Rims1
regulating synaptic membrane exocytosis 1
involved_in
ISO IBA
(PMID:21262469), (PMID:22753485) GO_REF:0000033
RGD GO_Central
PMID:21262469 PMID:22753485
GO_REF:0000033
NCBI chr 9:32,193,352...32,692,998
Ensembl chr 9:24,698,854...25,196,631
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Rims2
regulating synaptic membrane exocytosis 2
involved_in
ISO IBA
(PMID:21262469), (PMID:22753485) GO_REF:0000033
RGD GO_Central
PMID:21262469 PMID:22753485
GO_REF:0000033
NCBI chr 7:72,133,004...72,644,059
Ensembl chr 7:70,243,872...70,757,491
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Rims3
regulating synaptic membrane exocytosis 3
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 5:139,714,302...139,754,145
Ensembl chr 5:134,435,829...134,640,489
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Rph3a
rabphilin 3A
involved_in
IEA ISO
GO_REF:0000107 (PMID:16763567)
Ensembl RGD
PMID:16763567
GO_REF:0000107
NCBI chr12:41,203,004...41,279,536
Ensembl chr12:35,542,728...35,617,592
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Snap23
synaptosome associated protein 23
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 3:127,966,184...127,999,929
Ensembl chr 3:107,514,131...107,544,320
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Snap25
synaptosome associated protein 25
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 3:144,494,579...144,576,449
Ensembl chr 3:124,041,898...124,123,760
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Snap29
synaptosome associated protein 29
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr11:97,082,721...97,113,195
Ensembl chr11:83,578,489...83,608,958
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Snap47
synaptosome associated protein 47
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr10:44,692,430...44,733,986
Ensembl chr10:44,191,218...44,234,424
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Snca
synuclein alpha
involved_in
ISO IEA
(PMID:30404828) GO_REF:0000107
RGD Ensembl
PMID:30404828
GO_REF:0000107
NCBI chr 4:91,026,474...91,127,444
Ensembl chr 4:89,696,420...89,796,262
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Stxbp1
syntaxin binding protein 1
involved_in
ISO
(PMID:17110441)
RGD
PMID:17110441
NCBI chr 3:36,474,428...36,536,120
Ensembl chr 3:16,076,391...16,138,369
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Sv2a
synaptic vesicle glycoprotein 2a
involved_in
ISO
(PMID:19176798)
RGD
PMID:19176798
NCBI chr 2:183,741,489...183,757,290
Ensembl chr 2:183,741,547...183,756,927
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Synj1
synaptojanin 1
acts_upstream_of_or_within
ISO
MGI:2179801 (PMID:12481038)
RGD
PMID:12481038
NCBI chr11:43,678,709...43,755,526
Ensembl chr11:30,192,629...30,269,220
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Unc13a
unc-13 homolog A
involved_in
IDA IBA ISO
GO_REF:0000033 (PMID:11832228)
GO_Central RGD
PMID:11832228 PMID:21499244
GO_REF:0000033, RGD:5686389
NCBI chr16:18,367,891...18,415,808
Ensembl chr16:18,336,229...18,381,872
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Unc13b
unc-13 homolog B
involved_in acts_upstream_of_or_within
ISS IMP IBA ISO
GO_REF:0000024 PMID:22966208 GO_REF:0000033 MGI:2449706 (PMID:12070347) (PMID:11832228)
ParkinsonsUK-UCL GO_Central RGD
PMID:11832228 PMID:12070347 PMID:22966208
GO_REF:0000024 GO_REF:0000033, RGD:11535109
NCBI chr 5:62,084,809...62,299,884
Ensembl chr 5:57,289,227...57,502,926
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Unc13c
unc-13 homolog C
involved_in
IMP IBA
PMID:22966208 GO_REF:0000033
GO_Central
PMID:22966208
GO_REF:0000033, RGD:11535109
NCBI chr 8:83,127,650...83,553,822
Ensembl chr 8:74,247,899...74,673,223
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Vamp1
vesicle-associated membrane protein 1
involved_in
ISO
(PMID:24944211)
RGD
PMID:24944211
NCBI chr 4:158,012,634...158,019,350
Ensembl chr 4:158,012,663...158,019,349
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Rims1
regulating synaptic membrane exocytosis 1
involved_in
IGI
PMID:21262469
ParkinsonsUK-UCL
PMID:21262469
RGD:10047275
NCBI chr 9:32,193,352...32,692,998
Ensembl chr 9:24,698,854...25,196,631
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Unc13b
unc-13 homolog B
involved_in
IGI
PMID:21262469
ParkinsonsUK-UCL
PMID:21262469 PMID:21262469
RGD:10047275 , RGD:10047275
NCBI chr 5:62,084,809...62,299,884
Ensembl chr 5:57,289,227...57,502,926
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Brsk1
BR serine/threonine kinase 1
involved_in
IDA IEP IMP
PMID:16630837
SynGO
PMID:16630837 PMID:16630837 PMID:16630837
RGD:8553864 , RGD:8553864 , RGD:8553864
NCBI chr 1:69,134,166...69,159,947
Ensembl chr 1:69,134,565...69,160,365
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Napa
NSF attachment protein alpha
involved_in acts_upstream_of_or_within
IEA ISO IBA
GO_REF:0000107 MGI:104562 (PMID:21040848) GO_REF:0000033
Ensembl RGD GO_Central
PMID:21040848
GO_REF:0000033 GO_REF:0000107
NCBI chr 1:76,787,036...76,805,869
Ensembl chr 1:76,786,932...76,805,869
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Napb
NSF attachment protein beta
involved_in acts_upstream_of_or_within
IEA ISO IBA
GO_REF:0000107 (PMID:21040848) MGI:104563 (PMID:21040848) GO_REF:0000033
Ensembl RGD GO_Central
PMID:21040848
GO_REF:0000033 GO_REF:0000107
NCBI chr 3:156,585,394...156,632,418
Ensembl chr 3:136,133,428...136,179,345
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Osbpl2
oxysterol binding protein-like 2
involved_in
ISO
(PMID:36577376)
RGD
PMID:36577376
NCBI chr 3:187,585,372...187,633,827
Ensembl chr 3:167,210,832...167,256,219
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Rab3a
RAB3A, member RAS oncogene family
involved_in
IDA
PMID:21689256
UniProt
PMID:21689256
RGD:14390056
NCBI chr16:18,718,164...18,722,273
Ensembl chr16:18,684,188...18,688,336
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Stx1a
syntaxin 1A
involved_in
ISO
UniProtKB:O35526|UniProtKB:P61264 (PMID:24133272)
RGD
PMID:24133272
NCBI chr12:27,278,517...27,306,547
Ensembl chr12:21,641,969...21,669,930
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Stx1b
syntaxin 1B
involved_in
ISS ISO IEA
GO_REF:0000024 UniProtKB:O35526 (PMID:24133272) GO_REF:0000107
ParkinsonsUK-UCL RGD Ensembl
PMID:24133272
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:191,846,016...191,864,878
Ensembl chr 1:182,415,546...182,441,280
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Stxbp1
syntaxin binding protein 1
involved_in
IMP IDA
PMID:21689256
RGD UniProt
PMID:19255244 PMID:21689256
RGD:2311128 , RGD:14390056
NCBI chr 3:36,474,428...36,536,120
Ensembl chr 3:16,076,391...16,138,369
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Stxbp5
syntaxin binding protein 5
involved_in
IEA ISO
GO_REF:0000107 (PMID:18936251)
Ensembl RGD
PMID:18936251
GO_REF:0000107
NCBI chr 1:6,002,738...6,155,528
Ensembl chr 1:4,185,529...4,335,101
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Syngr3
synaptogyrin 3
involved_in
ISO
(PMID:31090538)
RGD
PMID:31090538
NCBI chr10:14,215,088...14,219,844
Ensembl chr10:13,704,998...13,715,669
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Syp
synaptophysin
involved_in
ISO IEA
(PMID:31090538) GO_REF:0000107
RGD Ensembl
PMID:31090538
GO_REF:0000107
NCBI chr X:17,521,348...17,536,449
Ensembl chr X:14,849,444...14,864,745
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Unc13a
unc-13 homolog A
involved_in
IDA
PMID:21689256
UniProt
PMID:21689256
RGD:14390056
NCBI chr16:18,367,891...18,415,808
Ensembl chr16:18,336,229...18,381,872
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