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ONTOLOGY REPORT - ANNOTATIONS


Term:intestine smooth muscle contraction
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Accession:GO:0014827 term browser browse the term
Definition:A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the intestine. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The intestine is the section of the alimentary canal from the stomach to the anal canal. It includes the large intestine and small intestine.



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intestine smooth muscle contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htr1d 5-hydroxytryptamine receptor 1D involved_in ISO (PMID:9186750) RGD PMID:9186750 NCBI chr 5:148,656,252...148,676,532
Ensembl chr 5:148,674,495...148,675,619
JBrowse link
G Htr2b 5-hydroxytryptamine receptor 2B involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:7599919), (PMID:9186750)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:7599919 PMID:9186750 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:94,184,442...94,206,851
Ensembl chr 9:86,742,102...86,755,108
JBrowse link
G Ptger3 prostaglandin E receptor 3 involved_in IMP
IBA
GO_REF:0000033 GO_Central
RGD
PMID:24170253 GO_REF:0000033, RGD:10043193 NCBI chr 2:249,264,985...249,409,966
Ensembl chr 2:246,606,183...246,684,434
JBrowse link
G Tacr2 tachykinin receptor 2 IMP RGD PMID:11275010 RGD:5147481 NCBI chr20:30,751,645...30,766,181
Ensembl chr20:30,208,907...30,223,446
JBrowse link
negative regulation of small intestine smooth muscle contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kcnma1 potassium calcium-activated channel subfamily M alpha 1 IMP RGD PMID:23647678 RGD:10412032 NCBI chr15:351,065...1,057,117
Ensembl chr15:302,214...1,001,198
JBrowse link
G Ptger3 prostaglandin E receptor 3 IDA RGD PMID:11991626 RGD:10003093 NCBI chr 2:249,264,985...249,409,966
Ensembl chr 2:246,606,183...246,684,434
JBrowse link
G Ptger4 prostaglandin E receptor 4 IDA RGD PMID:11991626 RGD:10003093 NCBI chr 2:56,061,699...56,074,594
Ensembl chr 2:54,335,424...54,346,670
JBrowse link
positive regulation of colon smooth muscle contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kit KIT proto-oncogene receptor tyrosine kinase IMP RGD PMID:17322067 RGD:12910822 NCBI chr14:32,901,615...32,978,895
Ensembl chr14:32,548,877...32,624,652
JBrowse link
G Ptger3 prostaglandin E receptor 3 IMP RGD PMID:24170253 RGD:10043193 NCBI chr 2:249,264,985...249,409,966
Ensembl chr 2:246,606,183...246,684,434
JBrowse link
positive regulation of small intestine smooth muscle contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ghrl ghrelin and obestatin prepropeptide IDA RGD PMID:15890336 PMID:21874246 RGD:12907565, RGD:12910732 NCBI chr 4:148,421,315...148,431,128
Ensembl chr 4:146,865,712...146,869,621
JBrowse link
G Ghsr growth hormone secretagogue receptor IMP RGD PMID:21874246 PMID:15890336 RGD:12910732, RGD:12907565 NCBI chr 2:112,196,158...112,201,666
Ensembl chr 2:110,268,489...110,271,865
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase IMP RGD PMID:7542218 RGD:12910748 NCBI chr14:32,901,615...32,978,895
Ensembl chr14:32,548,877...32,624,652
JBrowse link
small intestine smooth muscle contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scn11a sodium voltage-gated channel alpha subunit 11 involved_in IEA
ISO
GO_REF:0000107
MGI:5558025 (PMID:32817686)
Ensembl
RGD
PMID:32817686 GO_REF:0000107 NCBI chr 8:128,374,441...128,444,718
Ensembl chr 8:119,496,769...119,567,044
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    multicellular organismal process 8969
      system process 3558
        muscle system process 485
          muscle contraction 344
            smooth muscle contraction 127
              gastro-intestinal system smooth muscle contraction 15
                intestine smooth muscle contraction 10
                  colon smooth muscle contraction + 2
                  small intestine smooth muscle contraction + 7
paths to the root