Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of collagen metabolic process
go back to main search page
Accession:GO:0010712 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the metabolism of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals.
Synonyms:exact_synonym: regulation of collagen metabolism


show annotations for term's descendants           Sort by:
regulation of collagen metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO MGI:2135670 (PMID:20053668) RGD PMID:20053668 NCBI chr14:81,211,800...81,227,215
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G Mfap4 microfibril associated protein 4 involved_in ISO (PMID:22355679) RGD PMID:22355679 NCBI chr10:46,666,552...46,669,613
Ensembl chr10:46,167,217...46,170,155 		JBrowse link
negative regulation of collagen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adora2b adenosine A2B receptor IMP RGD PMID:9535419 RGD:2316149 NCBI chr10:47,439,712...47,456,092
Ensembl chr10:46,940,384...46,956,772 		JBrowse link
G Ager advanced glycosylation end product-specific receptor IMP RGD PMID:21872885 RGD:7245949 NCBI chr20:4,152,758...4,155,956
Ensembl chr20:4,147,890...4,151,078 		JBrowse link
G Cygb cytoglobin IDA RGD PMID:20719976 RGD:9685174 NCBI chr10:102,376,506...102,386,272
Ensembl chr10:101,877,676...101,887,442 		JBrowse link
G Cyp2j4 cytochrome P450, family 2, subfamily j, polypeptide 4 IMP RGD PMID:25840911 PMID:29656108 RGD:12904676, RGD:150520032 NCBI chr 5:116,295,691...116,323,219
Ensembl chr 5:111,178,703...111,244,794 		JBrowse link
G Cyp7a1 cytochrome P450 family 7 subfamily A member 1 IMP RGD PMID:15521018 RGD:15045602 NCBI chr 5:24,174,505...24,184,202
Ensembl chr 5:19,376,974...19,386,688 		JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in ISO (PMID:25056700) RGD PMID:25056700 NCBI chr 6:31,175,919...31,183,657
Ensembl chr 6:25,445,298...25,463,698 		JBrowse link
G Errfi1 ERBB receptor feedback inhibitor 1 IMP RGD PMID:19204184 RGD:9685562 NCBI chr 5:166,606,841...166,620,124
Ensembl chr 5:161,323,998...161,337,282 		JBrowse link
G Fn1 fibronectin 1 IMP RGD PMID:15980055 RGD:1625201 NCBI chr 9:80,645,507...80,714,200
Ensembl chr 9:73,196,044...73,264,678 		JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 IMP RGD PMID:26880260 RGD:13504840 NCBI chr 1:252,306,541...252,337,622
Ensembl chr 1:242,357,306...242,380,633 		JBrowse link
G Il6 interleukin 6 involved_in ISO (PMID:12419823) RGD PMID:12419823 NCBI chr 4:5,889,999...5,894,575
Ensembl chr 4:5,213,394...5,219,178 		JBrowse link
G Il6r interleukin 6 receptor involved_in ISO (PMID:12419823) RGD PMID:12419823 NCBI chr 2:177,582,020...177,646,705
Ensembl chr 2:175,298,686...175,347,536 		JBrowse link
G Klf15 KLF transcription factor 15 IMP RGD PMID:25633973 RGD:596933353 NCBI chr 4:124,522,652...124,535,613
Ensembl chr 4:122,965,807...122,978,374 		JBrowse link
G Mir218-2 microRNA 218-2 involved_in ISO (PMID:19913496) RGD PMID:19913496 NCBI chr10:20,068,451...20,068,560
Ensembl chr10:20,068,451...20,068,560 		JBrowse link
G Mir29a microRNA 29a involved_in ISO (PMID:20067797) RGD PMID:20067797 NCBI chr 4:60,617,955...60,618,042 JBrowse link
G Mir29b1 microRNA 29b-1 involved_in ISO UniProtKB:P01137 (PMID:19913496), (PMID:22269326), (PMID:23221517) RGD PMID:19913496 PMID:22269326 PMID:23221517 NCBI chr 4:60,618,334...60,618,414
Ensembl chr 4:59,650,986...59,651,067 		JBrowse link
G Mir29b2 microRNA 29b-2 involved_in ISO UniProtKB:P01137 (PMID:19913496), (PMID:22269326), (PMID:23221517) RGD PMID:19913496 PMID:22269326 PMID:23221517 NCBI chr13:109,098,831...109,098,911
Ensembl chr13:106,570,367...106,570,456 		JBrowse link
G Notch1 notch receptor 1 IMP RGD PMID:28100501 RGD:152995503 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Nppc natriuretic peptide C IDA RGD PMID:12746286 RGD:1580115 NCBI chr 9:94,767,986...94,772,186
Ensembl chr 9:87,320,051...87,324,251 		JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 IMP RGD PMID:15980055 RGD:1625201 NCBI chr 7:25,733,471...25,829,440
Ensembl chr 7:23,846,122...23,942,047 		JBrowse link
G Ppard peroxisome proliferator-activated receptor delta IMP RGD PMID:17346664 RGD:2324888 NCBI chr20:6,300,527...6,365,707
Ensembl chr20:6,298,785...6,363,968 		JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma IMP RGD PMID:16202214 RGD:8553021 NCBI chr 4:150,095,743...150,221,104
Ensembl chr 4:148,423,194...148,548,468 		JBrowse link
G Rap1a RAP1A, member of RAS oncogene family IMP RGD PMID:22012077 RGD:9850086 NCBI chr 2:195,896,967...195,974,851
Ensembl chr 2:193,208,635...193,286,501 		JBrowse link
G Rapgef3 Rap guanine nucleotide exchange factor 3 IMP RGD PMID:22012077 RGD:9850086 NCBI chr 7:130,754,883...130,777,303
Ensembl chr 7:128,875,773...128,898,521 		JBrowse link
negative regulation of collagen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cst3 cystatin C involved_in ISO (PMID:10545518) RGD PMID:10545518 NCBI chr 3:156,790,061...156,794,116
Ensembl chr 3:136,336,920...136,340,822 		JBrowse link
positive regulation of collagen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1b activin A receptor type 1B IMP RGD PMID:27477354 RGD:151665478 NCBI chr 7:132,286,266...132,329,679
Ensembl chr 7:132,286,275...132,329,673 		JBrowse link
G Arrb2 arrestin, beta 2 IMP RGD PMID:28274926 RGD:13506828 NCBI chr10:55,645,539...55,653,485
Ensembl chr10:55,146,818...55,154,850 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:17720811)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:17720811 GO_REF:0000024 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Cbx8 chromobox 8 IMP RGD PMID:23572236 RGD:9586727 NCBI chr10:104,294,518...104,296,956
Ensembl chr10:104,294,518...104,297,024 		JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IDA RGD PMID:8663511 RGD:8549527 NCBI chr10:67,503,077...67,504,875
Ensembl chr10:67,005,424...67,007,226 		JBrowse link
G Ccn2 cellular communication network factor 2 IMP RGD PMID:19570811 RGD:2314490 NCBI chr 1:22,621,498...22,624,614
Ensembl chr 1:20,802,199...20,805,734 		JBrowse link
G Creb3l1 cAMP responsive element binding protein 3-like 1 involved_in ISO
IEA
ISS		 (PMID:25310401)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:25310401 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:98,408,240...98,449,104
Ensembl chr 3:77,952,540...77,993,456 		JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 IMP
IDA		 RGD PMID:26674152 PMID:24938620 RGD:11554781, RGD:150429973 NCBI chr13:84,726,412...84,851,032
Ensembl chr13:82,195,463...82,317,363 		JBrowse link
G Dicer1 dicer 1 ribonuclease III IMP RGD PMID:24337369 RGD:150340618 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Eng endoglin IMP RGD PMID:20156938 RGD:7257540 NCBI chr 3:36,332,190...36,370,324
Ensembl chr 3:15,934,518...15,973,230 		JBrowse link
G Ep300 E1A binding protein p300 IMP RGD PMID:18292803 RGD:2312266 NCBI chr 7:114,987,857...115,058,652
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G F2 coagulation factor II, thrombin involved_in IEA
ISO		 GO_REF:0000107
(PMID:9639571)		 Ensembl
RGD		 PMID:9639571 GO_REF:0000107 NCBI chr 3:98,051,958...98,065,246
Ensembl chr 3:77,596,198...77,609,486 		JBrowse link
G F2r coagulation factor II (thrombin) receptor involved_in ISO
ISS
IEA		 (PMID:9639571)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:9639571 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:28,604,066...28,620,579
Ensembl chr 2:26,868,404...26,885,870 		JBrowse link
G Gli2 GLI family zinc finger 2 IMP RGD PMID:26823780 RGD:155791684 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:10208865) RGD PMID:10208865 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Il18 interleukin 18 IDA RGD PMID:20644901 RGD:4889158 NCBI chr 8:59,802,072...59,829,275
Ensembl chr 8:50,906,960...50,932,887 		JBrowse link
G Inhba inhibin subunit beta A IDA RGD PMID:27477354 RGD:151665478 NCBI chr17:53,787,159...53,810,942
Ensembl chr17:49,095,920...49,108,982 		JBrowse link
G Itga2 integrin subunit alpha 2 IMP RGD PMID:10867645 RGD:2307406 NCBI chr 2:48,253,412...48,354,509
Ensembl chr 2:46,523,948...46,621,481 		JBrowse link
G Larp6 La ribonucleoprotein 6, translational regulator involved_in ISO (PMID:21746880) RGD PMID:21746880 NCBI chr 8:61,183,744...61,205,548
Ensembl chr 8:61,184,116...61,205,535 		JBrowse link
G Ltbp1 latent transforming growth factor beta binding protein 1 IMP RGD PMID:9607192 RGD:10412058 NCBI chr 6:25,781,625...26,177,346
Ensembl chr 6:20,029,629...20,425,349 		JBrowse link
G Mir21 microRNA 21 IDA RGD PMID:29084974 RGD:41404715 NCBI chr10:71,902,600...71,902,691
Ensembl chr10:71,405,257...71,405,348 		JBrowse link
G Mkx mohawk homeobox acts_upstream_of_or_within ISO MGI:4461224 (PMID:20498044) RGD PMID:20498044 NCBI chr17:59,772,113...59,851,160
Ensembl chr17:55,077,540...55,156,124 		JBrowse link
G Mrtfa myocardin related transcription factor A IMP RGD PMID:31928221 PMID:23325387 RGD:529195969, RGD:596933101 NCBI chr 7:114,424,481...114,594,594
Ensembl chr 7:112,544,312...112,714,418 		JBrowse link
G Myb MYB proto-oncogene, transcription factor IMP RGD PMID:15534927 RGD:11532676 NCBI chr 1:17,759,309...17,793,306
Ensembl chr 1:15,939,761...15,973,057 		JBrowse link
G Pdgfb platelet derived growth factor subunit B IMP RGD PMID:15358192 RGD:10449487 NCBI chr 7:113,419,882...113,438,343
Ensembl chr 7:111,540,345...111,557,984 		JBrowse link
G Pdgfrb platelet derived growth factor receptor beta IMP RGD PMID:15978205 RGD:2292205 NCBI chr18:56,770,348...56,809,228
Ensembl chr18:54,499,964...54,538,843 		JBrowse link
G Prdx5 peroxiredoxin 5 involved_in ISO (PMID:15276323) RGD PMID:15276323 NCBI chr 1:213,529,042...213,532,787
Ensembl chr 1:204,099,826...204,114,268 		JBrowse link
G Rgcc regulator of cell cycle involved_in ISO (PMID:19158077) RGD PMID:19158077 NCBI chr15:54,662,483...54,675,320
Ensembl chr15:54,662,483...54,681,141 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (PMID:18802027), (PMID:19362560) RGD PMID:18802027 PMID:19362560 NCBI chr 7:110,056,897...110,059,283
Ensembl chr 7:108,176,608...108,178,626 		JBrowse link
G Serpinb7 serpin family B member 7 IMP RGD PMID:21945418 RGD:7207383 NCBI chr13:23,884,466...23,956,834
Ensembl chr13:23,395,671...23,442,205 		JBrowse link
G Serpine1 serpin family E member 1 IMP RGD PMID:15828931 RGD:13208547 NCBI chr12:25,237,977...25,248,356
Ensembl chr12:19,601,272...19,611,657 		JBrowse link
G Serpinf2 serpin family F member 2 involved_in ISO (PMID:17958745)
(PMID:18436805)		 RGD PMID:17958745 PMID:18436805 NCBI chr10:60,770,698...60,778,782
Ensembl chr10:60,272,400...60,281,243 		JBrowse link
G Suco SUN domain containing ossification factor involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:20440000)		 UniProt
Ensembl
RGD		 PMID:20440000 GO_REF:0000024 GO_REF:0000107 NCBI chr13:76,726,095...76,791,174
Ensembl chr13:74,193,573...74,257,896 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in IMP
ISO
ISS		 RNAcentral:URS000024463E_9606 (PMID:11158066), (PMID:19734317), (PMID:22269326), (PMID:25310401)
GO_REF:0000024
(PMID:19734317)		 RGD
UniProt		 PMID:11158066 PMID:19734317 PMID:22269326 PMID:25310401 PMID:26923362 GO_REF:0000024, RGD:11073665 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
G Tgfb3 transforming growth factor, beta 3 involved_in ISO
ISS		 (PMID:11158066)
GO_REF:0000024		 RGD
AgBase		 PMID:11158066 GO_REF:0000024 NCBI chr 6:111,435,170...111,457,646
Ensembl chr 6:105,704,236...105,726,564 		JBrowse link
G Tnfrsf12a TNF receptor superfamily member 12A IMP RGD PMID:23325387 RGD:596933101 NCBI chr10:13,211,670...13,213,666
Ensembl chr10:12,689,890...12,709,045 		JBrowse link
G Ucn urocortin IDA RGD PMID:11087261 RGD:1642796 NCBI chr 6:30,958,086...30,958,916
Ensembl chr 6:25,238,120...25,238,950 		JBrowse link
G Uts2 urotensin 2 IDA RGD PMID:17184580 PMID:18475149 RGD:2306814, RGD:2306811 NCBI chr 5:166,725,471...166,739,063
Ensembl chr 5:161,450,846...161,456,237 		JBrowse link
G Vim vimentin involved_in IEA
ISO		 GO_REF:0000107
(PMID:21746880)		 Ensembl
RGD		 PMID:21746880 GO_REF:0000107 NCBI chr17:81,577,261...81,585,746
Ensembl chr17:76,668,647...76,677,187 		JBrowse link
G Wnt4 Wnt family member 4 involved_in ISO
IEA		 (PMID:17720811)
GO_REF:0000107		 RGD
Ensembl		 PMID:17720811 GO_REF:0000107 NCBI chr 5:154,797,245...154,818,565
Ensembl chr 5:149,514,018...149,532,859 		JBrowse link
positive regulation of collagen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idua alpha-L-iduronidase acts_upstream_of_or_within ISO MGI:2176236 (PMID:19834056) RGD PMID:19834056 NCBI chr14:1,175,994...1,203,913
Ensembl chr14:1,032,171...1,046,522 		JBrowse link
G Vsir V-set immunoregulatory receptor involved_in ISO (PMID:20666777) RGD PMID:20666777 NCBI chr20:28,281,582...28,307,262
Ensembl chr20:28,281,596...28,303,878 		JBrowse link
positive regulation of collagen metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Retn resistin IMP RGD PMID:20795947 RGD:7207234 NCBI chr12:6,508,653...6,511,115
Ensembl chr12:1,710,881...1,712,620 		JBrowse link
regulation of collagen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fap fibroblast activation protein, alpha involved_in ISO (PMID:10455171) RGD PMID:10455171 NCBI chr 3:67,547,398...67,616,271
Ensembl chr 3:47,138,813...47,225,545 		JBrowse link
G Itgb1 integrin subunit beta 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:10455171)		 UniProt
RGD		 PMID:10455171 GO_REF:0000024 NCBI chr19:73,602,277...73,650,271
Ensembl chr19:56,705,171...56,753,195 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      metabolic process 12160
        regulation of metabolic process 6834
          regulation of collagen metabolic process 71
            negative regulation of collagen metabolic process + 24
            positive regulation of collagen metabolic process + 43
            regulation of collagen biosynthetic process + 63
            regulation of collagen catabolic process + 5
Path 2
Term Annotations click to browse term
  biological_process 20536
    biological regulation 13822
      regulation of biological process 13376
        regulation of cellular process 13014
          regulation of metabolic process 6834
            regulation of collagen metabolic process 71
              negative regulation of collagen metabolic process + 24
              positive regulation of collagen metabolic process + 43
              regulation of collagen biosynthetic process + 63
              regulation of collagen catabolic process + 5
paths to the root