Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:chromocenter
go back to main search page
Accession:GO:0010369 term browser browse the term
Definition:A region in which centric, heterochromatic portions from more than one chromosomes form a compact structure.

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
chromocenter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AURKB aurora kinase B located_in IEA Ensembl GO_REF:0000107 NCBI chr16:7,571,255...7,583,034
Ensembl chr16:7,570,538...7,582,959 		JBrowse link
G CBX1 chromobox 1 located_in ISO (PMID:15322135), (PMID:17261847) MGI PMID:15322135 PMID:17261847 NCBI chr16:68,471,298...68,508,180 JBrowse link
G CBX1 chromobox 1 located_in IEA Ensembl GO_REF:0000107 Ensembl chr16:68,472,669...68,508,137 JBrowse link
G CBX3 chromobox 3 located_in ISO (PMID:15322135) MGI PMID:15322135 NCBI chr21:32,154,707...32,166,843
Ensembl chr21:32,155,839...32,166,114 		JBrowse link
G CBX5 chromobox 5 located_in IEA Ensembl GO_REF:0000107 NCBI chr11:50,350,440...50,396,595
Ensembl chr11:50,353,638...50,396,608 		JBrowse link
G CDCA8 cell division cycle associated 8 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:95,151,814...95,169,111
Ensembl chr20:95,151,752...95,169,033 		JBrowse link
G ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:25,885,823...25,919,863
Ensembl chr 8:25,887,309...25,916,630 		JBrowse link
G FMR1 Fragile X messenger ribonucleoprotein 1 located_in ISO (PMID:24813610) UniProt PMID:24813610 NCBI chr  X:122,635,383...122,674,298
Ensembl chr  X:122,635,439...122,674,355 		JBrowse link
G INCENP inner centromere protein located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:11,695,803...11,725,633
Ensembl chr 1:11,692,559...11,720,940 		JBrowse link
G MBD5 methyl-CpG binding domain protein 5 located_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:33,401,903...33,907,307
Ensembl chr10:33,743,166...33,904,508 		JBrowse link
G MBD6 methyl-CpG binding domain protein 6 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:53,431,423...53,438,719
Ensembl chr11:53,432,903...53,437,817 		JBrowse link
G OIP5 Opa interacting protein 5 located_in ISO (PMID:17284516) MGI PMID:17284516 NCBI chr26:41,667,929...41,682,056 JBrowse link
G SALL1 spalt like transcription factor 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:36,928,711...36,944,158
Ensembl chr 5:36,927,990...36,943,630 		JBrowse link
G SCMH1 Scm polycomb group protein homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:91,724,068...91,890,131
Ensembl chr20:91,751,977...91,889,164 		JBrowse link
G SOX30 SRY-box transcription factor 30 located_in IEA Ensembl GO_REF:0000107 NCBI chr23:60,013,384...60,038,682
Ensembl chr23:60,014,046...60,037,997 		JBrowse link
G TAF7L TATA-box binding protein associated factor 7 like NOT|located_in ISO (PMID:12665565) MGI PMID:12665565 NCBI chr  X:89,610,238...89,636,238
Ensembl chr  X:89,611,208...89,635,921 		JBrowse link
G TRIM66 tripartite motif containing 66 located_in ISO (PMID:15322135) MGI PMID:15322135 NCBI chr 1:56,118,792...56,180,748 JBrowse link
perinucleolar chromocenter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PIWIL2 piwi like RNA-mediated gene silencing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:20,347,998...20,436,016
Ensembl chr 8:20,352,771...20,433,947 		JBrowse link
G TINF2 TERF1 interacting nuclear factor 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr24:1,222,617...1,225,981
Ensembl chr24:1,222,999...1,225,716 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20991
    cellular anatomical structure 20607
      organelle 15459
        membraneless organelle 5788
          intracellular membraneless organelle 5788
            chromocenter 19
              perinucleolar chromocenter 2
              polytene chromosome chromocenter + 0
paths to the root