Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:response to X-ray
go back to main search page
Accession:GO:0010165 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz).
Synonyms:exact_synonym: response to X-ray radiation stimulus


show annotations for term's descendants           Sort by:
response to X-ray term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 IEP RGD PMID:9269316 RGD:2306948 NCBI chr 1:217,861,175...217,877,205
Ensembl chr 1:217,861,175...217,877,343 		JBrowse link
G Blm BLM RecQ like helicase involved_in ISO
IEA 		(PMID:11309417)
GO_REF:0000107 		RGD
Ensembl		 PMID:11309417 GO_REF:0000107 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312 		JBrowse link
G Brca2 BRCA2, DNA repair associated acts_upstream_of_or_within ISO
IEA 		MGI:1930616|MGI:2177226|MGI:2448890 (PMID:16859999), (PMID:9398843), (PMID:9660919)
GO_REF:0000107 		RGD
Ensembl		 PMID:9398843 PMID:9660919 PMID:16859999 GO_REF:0000107 NCBI chr12:4,895,092...4,939,340
Ensembl chr12:59,819...100,567 		JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 acts_upstream_of_or_within ISO (PMID:14636569) RGD PMID:14636569 NCBI chr 9:1,986,942...1,989,484
Ensembl chr 9:1,986,575...1,991,080 		JBrowse link
G Casp3 caspase 3 IEP RGD PMID:18239382 RGD:2293328 NCBI chr16:52,395,539...52,413,794
Ensembl chr16:45,662,910...45,684,648 		JBrowse link
G Ccnd1 cyclin D1 IEP RGD PMID:17148264 RGD:1601086 NCBI chr 1:209,518,288...209,527,986
Ensembl chr 1:200,089,002...200,098,602 		JBrowse link
G Cdkn1a cyclin-dependent kinase inhibitor 1A IEP RGD PMID:18413982 RGD:8662408 NCBI chr20:7,150,820...7,161,373
Ensembl chr20:7,149,217...7,159,585 		JBrowse link
G Col2a1 collagen type II alpha 1 chain IEP RGD PMID:17549535 RGD:8661655 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within ISO MGI:2183944 (PMID:15979950) RGD PMID:15979950 NCBI chr 1:88,099,308...88,135,966
Ensembl chr 1:78,996,390...79,007,963 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within ISO
IEA 		MGI:1932102 (PMID:15979950), (PMID:17145777)
GO_REF:0000107 		RGD
Ensembl		 PMID:15979950 PMID:17145777 GO_REF:0000107 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587 		JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit acts_upstream_of_or_within ISO
IEA 		MGI:2449180 (PMID:17145777)
GO_REF:0000107 		RGD
Ensembl		 PMID:17145777 GO_REF:0000107 NCBI chr 2:39,647,393...39,686,229
Ensembl chr 2:39,647,452...39,684,859 		JBrowse link
G Fga fibrinogen alpha chain IEP RGD PMID:4170424 RGD:11040910 NCBI chr 2:168,374,120...168,381,523
Ensembl chr 2:168,374,120...168,381,528 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha IEP RGD PMID:15161688 RGD:9068912 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Hp haptoglobin IEP RGD PMID:12379430 RGD:1626377 NCBI chr19:37,539,626...37,544,178
Ensembl chr19:37,539,627...37,544,523 		JBrowse link
G Il7 interleukin 7 IEP RGD PMID:15799696 RGD:10402940 NCBI chr 2:94,235,219...94,280,075
Ensembl chr 2:94,234,766...94,280,075 		JBrowse link
G Kars1 lysyl-tRNA synthetase 1 IDA RGD PMID:4001316 RGD:12910553 NCBI chr19:39,957,846...39,976,837
Ensembl chr19:39,957,846...39,977,632 		JBrowse link
G Lcn10 lipocalin 10 acts_upstream_of_or_within ISO
IEA 		(PMID:35757735)
GO_REF:0000107 		RGD
Ensembl		 PMID:35757735 GO_REF:0000107 NCBI chr 3:8,490,781...8,494,334
Ensembl chr 3:8,490,781...8,494,333 		JBrowse link
G Lig4 DNA ligase 4 involved_in ISO (PMID:9809069) RGD PMID:9809069 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040 		JBrowse link
G Lrp2 LDL receptor related protein 2 IDA RGD PMID:12121845 RGD:1641839 NCBI chr 3:54,189,305...54,346,769
Ensembl chr 3:54,189,308...54,346,708 		JBrowse link
G Msh2 mutS homolog 2 acts_upstream_of_or_within ISO
IEA 		(PMID:12687013)
GO_REF:0000107 		RGD
Ensembl		 PMID:12687013 GO_REF:0000107 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938 		JBrowse link
G Pdxk pyridoxal kinase IEP RGD PMID:2928487 RGD:2303016 NCBI chr20:10,210,276...10,232,314
Ensembl chr20:10,210,289...10,232,110 		JBrowse link
G Pmaip1 phorbol-12-myristate-13-acetate-induced protein 1 acts_upstream_of_or_within ISO MGI:2678372 (PMID:12952892) RGD PMID:12952892 NCBI chr18:59,986,020...59,992,434
Ensembl chr18:59,986,017...59,992,429 		JBrowse link
G Rad51 RAD51 recombinase IEP RGD PMID:17148264 RGD:1601086 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035 		JBrowse link
G Thbd thrombomodulin IEP RGD PMID:12057911 RGD:634507 NCBI chr 3:135,863,366...135,867,018
Ensembl chr 3:135,862,835...135,867,193 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within IEP
IEA
ISO
IMP 		GO_REF:0000107
MGI:1857263 (PMID:11884608), (PMID:22821713) 		Ensembl
RGD		 PMID:11884608 PMID:22821713 PMID:17699727 PMID:28834365 GO_REF:0000107, RGD:2290567, RGD:14995504 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Vwf von Willebrand factor IEP RGD PMID:8811296 RGD:11079207 NCBI chr 4:158,360,152...158,491,539
Ensembl chr 4:158,360,152...158,491,539 		JBrowse link
G Xrcc2 X-ray repair cross complementing 2 acts_upstream_of_or_within ISO
IEA 		MGI:2662686 (PMID:15979950)
GO_REF:0000107 		RGD
Ensembl		 PMID:15979950 GO_REF:0000107 NCBI chr 4:9,423,873...9,502,980
Ensembl chr 4:9,423,898...9,442,482 		JBrowse link
G Xrcc4 X-ray repair cross complementing 4 involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:9242410)
GO_REF:0000107
MGI:1926771 (PMID:9875844)
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:9242410 PMID:9875844 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808 		JBrowse link
G Xrra1 X-ray radiation resistance associated 1 involved_in ISO (PMID:12908878) RGD PMID:12908878 NCBI chr 1:154,183,330...154,247,883
Ensembl chr 1:154,183,377...154,247,895 		JBrowse link
cellular response to X-ray term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in ISO (PMID:26323318) RGD PMID:26323318 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437 		JBrowse link
G Ccnd2 cyclin D2 acts_upstream_of_or_within ISO MGI:2180642 (PMID:23714078) RGD PMID:23714078 NCBI chr 4:159,966,883...159,989,261
Ensembl chr 4:159,962,363...159,989,495 		JBrowse link
G Dbn1 drebrin 1 IEP RGD PMID:23578130 RGD:10398817 NCBI chr17:9,150,608...9,164,982
Ensembl chr17:9,150,659...9,164,984 		JBrowse link
G Dnm2 dynamin 2 IEP RGD PMID:15994918 RGD:9685147 NCBI chr 8:19,978,313...20,060,162
Ensembl chr 8:19,978,400...20,060,157 		JBrowse link
G Hamp hepcidin antimicrobial peptide IEP RGD PMID:17090718 RGD:11041722 NCBI chr 1:86,170,926...86,172,865
Ensembl chr 1:86,170,901...86,172,891 		JBrowse link
G Kat5 lysine acetyltransferase 5 IEP RGD PMID:15985650 RGD:2316135 NCBI chr 1:212,325,089...212,332,640
Ensembl chr 1:202,895,751...202,903,458 		JBrowse link
G Lcn2 lipocalin 2 IEP RGD PMID:23331620 RGD:126790570 NCBI chr 3:15,680,688...15,684,033
Ensembl chr 3:15,680,687...15,684,095 		JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in ISO
IEA 		(PMID:17468178)
GO_REF:0000107 		RGD
Ensembl		 PMID:17468178 GO_REF:0000107 NCBI chr 2:57,399,443...57,586,770
Ensembl chr 2:57,399,445...57,565,899 		JBrowse link
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 involved_in ISO (PMID:26323318) RGD PMID:26323318 NCBI chr13:43,345,091...43,374,316
Ensembl chr13:43,345,115...43,370,229 		JBrowse link
G Prap1 proline-rich acidic protein 1 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:32629119)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:32629119 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:194,883,078...194,886,874
Ensembl chr 1:194,883,078...194,886,872 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:19778523) 		Ensembl
RGD		 PMID:19778523 GO_REF:0000107 NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 involved_in ISO
IEA 		(PMID:19778523)
GO_REF:0000107 		RGD
Ensembl		 PMID:19778523 GO_REF:0000107 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 IEP RGD PMID:21915754 RGD:9586753 NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822 		JBrowse link
G Xrcc5 X-ray repair cross complementing 5 IDA RGD PMID:11966321 RGD:727219 NCBI chr 9:73,955,216...74,044,020
Ensembl chr 9:73,955,216...74,044,018 		JBrowse link
G Xrcc6 X-ray repair cross complementing 6 IDA RGD PMID:11175667 RGD:2317102 NCBI chr 7:113,542,992...113,563,762
Ensembl chr 7:113,543,057...113,563,762 		JBrowse link
regulation of cellular response to X-ray term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISO
IEA 		(PMID:19735555)
GO_REF:0000107 		RGD
Ensembl		 PMID:19735555 GO_REF:0000107 NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    response to stimulus 11082
      response to abiotic stimulus 1619
        response to radiation 540
          response to ionizing radiation 199
            response to X-ray 45
              cellular response to X-ray + 16
paths to the root