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ONTOLOGY REPORT - ANNOTATIONS

Term:anterior/posterior pattern specification
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Accession:GO:0009952 term browser browse the term
Definition:The regionalization process in which specific areas of cell differentiation are determined along the anterior-posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism.
Synonyms:related_synonym: anterior/posterior pattern formation


show annotations for term's descendants           Sort by:
anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2a activin A receptor type 2A acts_upstream_of_or_within ISO
IEA 		MGI:87912 (PMID:10452853), (PMID:16991118)
GO_REF:0000107 		RGD
Ensembl		 PMID:10452853 PMID:16991118 GO_REF:0000107 NCBI chr 3:33,204,961...33,292,673
Ensembl chr 3:33,205,523...33,289,968 		JBrowse link
G Acvr2b activin A receptor type 2B involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:9916847)
MGI:102806|MGI:1095407|MGI:1857709|MGI:98728 (PMID:10452853), (PMID:15542835), (PMID:16845371), (PMID:16991118), (PMID:9242489)
GO_REF:0000107 		RGD
Ensembl		 PMID:9242489 PMID:9916847 PMID:10452853 PMID:15542835 PMID:16845371 More... GO_REF:0000107 NCBI chr 8:119,138,901...119,178,477
Ensembl chr 8:119,138,812...119,170,458 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO
IEA 		MGI:1096359|MGI:1857891|MGI:2180721|MGI:2679699 (PMID:15652703), (PMID:15872003), (PMID:16368932), (PMID:17067568)
GO_REF:0000107 		RGD
Ensembl		 PMID:15652703 PMID:15872003 PMID:16368932 PMID:17067568 GO_REF:0000107 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Alx1 ALX homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:108359 (PMID:9847249)
GO_REF:0000107 		RGD
Ensembl		 PMID:9847249 GO_REF:0000107 NCBI chr 7:38,157,626...38,177,220
Ensembl chr 7:38,147,117...38,177,220 		JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO
IEA 		MGI:104621|MGI:1857484 (PMID:9374397), (PMID:9847249)
GO_REF:0000107 		RGD
Ensembl		 PMID:9374397 PMID:9847249 GO_REF:0000107 NCBI chr 3:79,611,682...79,648,260
Ensembl chr 3:79,611,719...79,648,260 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:2449944 (PMID:12645927) RGD PMID:12645927 NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
G Arc activity-regulated cytoskeleton-associated protein acts_upstream_of_or_within ISO MGI:2386454 (PMID:10727859) RGD PMID:10727859 NCBI chr 7:106,555,968...106,559,697
Ensembl chr 7:106,555,785...106,559,378 		JBrowse link
G Barx1 BARX homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:3578634 (PMID:17855428)
GO_REF:0000107 		RGD
Ensembl		 PMID:17855428 GO_REF:0000107 NCBI chr17:15,990,412...15,993,887
Ensembl chr17:15,990,412...15,993,887 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA 		MGI:2158342 (PMID:15136140)
GO_REF:0000107 		RGD
Ensembl		 PMID:15136140 GO_REF:0000107 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 acts_upstream_of_or_within ISO
IEA 		MGI:2158503|MGI:87912 (PMID:10772805), (PMID:15542835)
GO_REF:0000107 		RGD
Ensembl		 PMID:10772805 PMID:15542835 GO_REF:0000107 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G Bptf bromodomain PHD finger transcription factor acts_upstream_of_or_within ISO
IEA 		MGI:3823037|MGI:3841299 (PMID:18794365), (PMID:18974875)
GO_REF:0000107 		RGD
Ensembl		 PMID:18794365 PMID:18974875 GO_REF:0000107 NCBI chr10:91,980,279...92,082,731
Ensembl chr10:91,982,758...92,082,769 		JBrowse link
G Btg2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO
IEA 		MGI:3525505 (PMID:15542835)
GO_REF:0000107 		RGD
Ensembl		 PMID:15542835 GO_REF:0000107 NCBI chr13:45,531,881...45,535,642
Ensembl chr13:45,531,925...45,535,628 		JBrowse link
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO
IEA 		MGI:2653120 (PMID:19754878)
GO_REF:0000107 		RGD
Ensembl		 PMID:19754878 GO_REF:0000107 NCBI chr 8:33,775,123...33,861,635
Ensembl chr 8:33,806,183...33,859,033 		JBrowse link
G Cdx1 caudal type homeo box 1 acts_upstream_of_or_within ISO
IEA 		MGI:2154514|MGI:97858 (PMID:11784046), (PMID:7585967)
GO_REF:0000107 		RGD
Ensembl		 PMID:7585967 PMID:11784046 GO_REF:0000107 NCBI chr18:54,472,587...54,490,913
Ensembl chr18:54,473,444...54,490,814 		JBrowse link
G Cdx2 caudal type homeo box 2 acts_upstream_of_or_within ISO
IEA 		MGI:88362 (PMID:19853565)
GO_REF:0000107 		RGD
Ensembl		 PMID:19853565 GO_REF:0000107 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142 		JBrowse link
G Cdx4 caudal type homeo box 4 acts_upstream_of_or_within ISO
IEA 		MGI:88361 (PMID:19853565)
GO_REF:0000107 		RGD
Ensembl		 PMID:19853565 GO_REF:0000107 NCBI chr  X:68,326,874...68,335,461
Ensembl chr  X:68,326,874...68,335,461 		JBrowse link
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO MGI:2668337|MGI:4430218 (PMID:18849982), (PMID:19357712) RGD PMID:18849982 PMID:19357712 NCBI chr 7:116,987,616...117,125,035
Ensembl chr 7:116,987,605...117,125,164 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO
IEA 		(PMID:9501024)
GO_REF:0000107 		RGD
Ensembl		 PMID:9501024 GO_REF:0000107 NCBI chr 5:97,306,427...97,309,783
Ensembl chr 5:97,306,431...97,309,783 		JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:97451 (PMID:11412024) 		GO_Central
Ensembl
RGD		 PMID:11412024 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:36,742,106...36,751,931
Ensembl chr 9:36,739,071...36,751,930 		JBrowse link
G Cripto cripto, EGF-CFC family member involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:119,803,182...119,808,714
Ensembl chr 8:110,925,024...110,930,308 		JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO MGI:98493 (PMID:16399080) RGD PMID:16399080 NCBI chr11:83,528,788...83,563,214
Ensembl chr11:83,526,530...83,563,238 		JBrowse link
G Ctnnbip1 catenin, beta-interacting protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:3045424 (PMID:15148409)
GO_REF:0000107 		RGD
Ensembl		 PMID:15148409 GO_REF:0000107 NCBI chr 5:159,961,961...160,010,942
Ensembl chr 5:159,961,928...160,010,939 		JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 acts_upstream_of_or_within ISO MGI:2183292|MGI:2679699 (PMID:17067568) RGD PMID:17067568 NCBI chr 1:235,471,368...235,475,204
Ensembl chr 1:235,471,298...235,475,204 		JBrowse link
G Cyp26c1 cytochrome P450, family 26, subfamily C, polypeptide 1 acts_upstream_of_or_within ISO
IEA 		MGI:1096359 (PMID:17067568)
GO_REF:0000107 		RGD
Ensembl		 PMID:17067568 GO_REF:0000107 NCBI chr 1:235,458,961...235,468,433
Ensembl chr 1:235,459,356...235,466,842 		JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:2148858|MGI:97490 (PMID:12196586), (PMID:15917450)
GO_REF:0000107 		RGD
Ensembl		 PMID:12196586 PMID:15917450 GO_REF:0000107 NCBI chr 1:258,626,584...258,633,594
Ensembl chr 1:258,626,584...258,633,594 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:99783 (PMID:10498685) RGD PMID:10498685 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Foxh1 forkhead box H1 acts_upstream_of_or_within ISO
IEA 		MGI:2387775 (PMID:11358868)
GO_REF:0000107 		RGD
Ensembl		 PMID:11358868 GO_REF:0000107 NCBI chr 7:108,387,969...108,391,566
Ensembl chr 7:108,387,969...108,390,049 		JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO MGI:4346364 (PMID:19877275) RGD PMID:19877275 NCBI chr 1:95,379,542...95,384,532
Ensembl chr 1:95,379,587...95,384,530 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO
IEA 		MGI:2449672|MGI:5544775 (PMID:10391213), (PMID:23918385)
GO_REF:0000107 		RGD
Ensembl		 PMID:10391213 PMID:23918385 GO_REF:0000107 NCBI chr 7:1,311,732...1,325,211
Ensembl chr 7:1,311,732...1,320,725 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95729 (PMID:22841643) RGD PMID:22841643 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856276|MGI:3798847|MGI:95728 (PMID:15315762), (PMID:22841643)
GO_REF:0000107 		RGD
Ensembl		 PMID:15315762 PMID:22841643 GO_REF:0000107 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Grsf1 G-rich RNA sequence binding factor 1 acts_upstream_of_or_within ISO (PMID:15857914) RGD PMID:15857914 NCBI chr14:19,412,944...19,429,364
Ensembl chr14:19,412,156...19,429,362 		JBrowse link
G Hhex hematopoietically expressed homeobox involved_in ISO
IEA 		(PMID:16936074)
GO_REF:0000107 		RGD
Ensembl		 PMID:16936074 GO_REF:0000107 NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 acts_upstream_of_or_within ISO
IEA 		MGI:1314872 (PMID:16537918)
GO_REF:0000107 		RGD
Ensembl		 PMID:16537918 GO_REF:0000107 NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 acts_upstream_of_or_within ISO MGI:1314872 (PMID:16537918) RGD PMID:16537918 NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO
IEA 		MGI:2176174|MGI:2670936 (PMID:15872003)
GO_REF:0000107 		RGD
Ensembl		 PMID:15872003 GO_REF:0000107 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888 		JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:3056069|MGI:96182 (PMID:10529420), (PMID:15367676) RGD PMID:10529420 PMID:15367676 NCBI chr 4:81,255,814...81,258,587
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
G Hoxa10 homeobox A10 acts_upstream_of_or_within ISO
IEA 		MGI:96192|MGI:96202 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 4:81,331,591...81,340,878
Ensembl chr 4:81,331,591...81,340,919 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO
IEA 		MGI:96193|MGI:96203 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO
IEA 		MGI:1857626 (PMID:9367425)
GO_REF:0000107 		RGD
Ensembl		 PMID:9367425 GO_REF:0000107 NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044 		JBrowse link
G Hoxa3 homeobox A3 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:96184|MGI:96207 (PMID:7913519), (PMID:9441667) 		GO_Central
Ensembl
RGD		 PMID:7913519 PMID:9441667 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:81,269,243...81,313,218
Ensembl chr 4:81,269,243...81,313,218 		JBrowse link
G Hoxa4 homeo box A4 acts_upstream_of_or_within ISO MGI:2150391|MGI:96185|MGI:96208 (PMID:7628700), (PMID:7918106) RGD PMID:7628700 PMID:7918106 NCBI chr 4:81,289,677...81,291,685
Ensembl chr 4:81,289,682...81,291,685 		JBrowse link
G Hoxa5 homeo box A5 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2150397|MGI:3723623|MGI:96186|MGI:96196 (PMID:17417799), (PMID:17626057), (PMID:7901120), (PMID:9603431) 		GO_Central
RGD		 PMID:7901120 PMID:9603431 PMID:17417799 PMID:17626057 GO_REF:0000033 NCBI chr 4:81,302,341...81,306,234
Ensembl chr 4:81,302,353...81,306,234 		JBrowse link
G Hoxa6 homeobox A6 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2150392|MGI:96187|MGI:96197 (PMID:17626057), (PMID:7918106) 		GO_Central
RGD		 PMID:7918106 PMID:17626057 GO_REF:0000033 NCBI chr 4:81,304,918...81,313,184
Ensembl chr 4:81,306,407...81,308,850 		JBrowse link
G Hoxa7 homeobox A7 acts_upstream_of_or_within ISO
IEA 		MGI:96188 (PMID:9784603)
GO_REF:0000107 		RGD
Ensembl		 PMID:9784603 GO_REF:0000107 NCBI chr 4:81,315,730...81,317,629
Ensembl chr 4:81,314,625...81,317,659 		JBrowse link
G Hoxa9 homeobox A9 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2150411|MGI:96190|MGI:96199|MGI:96210 (PMID:17626057), (PMID:8625797), (PMID:9013929) 		GO_Central
RGD		 PMID:8625797 PMID:9013929 PMID:17626057 GO_REF:0000033 NCBI chr 4:82,653,847...82,659,958
Ensembl chr 4:81,323,382...81,326,358 		JBrowse link
G Hoxb1 homeo box B1 acts_upstream_of_or_within ISO
IEA 		MGI:96170|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (PMID:10529420), (PMID:10885747)
GO_REF:0000107 		RGD
Ensembl		 PMID:10529420 PMID:10885747 GO_REF:0000107 NCBI chr10:81,331,507...81,332,928
Ensembl chr10:81,331,507...81,332,836 		JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO
IEA 		MGI:2151772|MGI:96182|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (PMID:10885747), (PMID:9012503)
GO_REF:0000107 		RGD
Ensembl		 PMID:9012503 PMID:10885747 GO_REF:0000107 NCBI chr10:81,317,828...81,320,220
Ensembl chr10:81,318,026...81,320,192 		JBrowse link
G Hoxb3 homeo box B3 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:96175|MGI:96182|MGI:96183|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190|MGI:96207 (PMID:10885747), (PMID:9441667) 		GO_Central
Ensembl
RGD		 PMID:9441667 PMID:10885747 GO_REF:0000033 GO_REF:0000107 NCBI chr10:81,258,739...81,314,134
Ensembl chr10:81,299,357...81,313,107 		JBrowse link
G Hoxb4 homeo box B4 acts_upstream_of_or_within ISO
IEA 		MGI:96176|MGI:96183|MGI:96184|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (PMID:10885747), (PMID:7628700), (PMID:9012503)
GO_REF:0000107 		RGD
Ensembl		 PMID:7628700 PMID:9012503 PMID:10885747 GO_REF:0000107 NCBI chr10:81,284,552...81,287,134
Ensembl chr10:81,284,552...81,287,128 		JBrowse link
G Hoxb5 homeo box B5 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2151484|MGI:96177|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96187|MGI:96188|MGI:96189|MGI:96190|MGI:96196 (PMID:10885747), (PMID:17626057), (PMID:7828847) 		GO_Central
RGD		 PMID:7828847 PMID:10885747 PMID:17626057 GO_REF:0000033 NCBI chr10:81,269,372...81,271,580
Ensembl chr10:81,269,372...81,271,580 		JBrowse link
G Hoxb6 homeo box B6 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2151485|MGI:96178|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96188|MGI:96189|MGI:96190|MGI:96197 (PMID:10885747), (PMID:17626057), (PMID:7828847) 		GO_Central
RGD		 PMID:7828847 PMID:10885747 PMID:17626057 GO_REF:0000033 NCBI chr10:81,258,726...81,267,458
Ensembl chr10:81,265,056...81,267,449 		JBrowse link
G Hoxb7 homeo box B7 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:2150401|MGI:96179|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96189|MGI:96190 (PMID:10885747), (PMID:9784603) 		GO_Central
Ensembl
RGD		 PMID:9784603 PMID:10885747 GO_REF:0000033 GO_REF:0000107 NCBI chr10:81,252,616...81,256,034
Ensembl chr10:81,252,553...81,256,034 		JBrowse link
G Hoxb8 homeo box B8 acts_upstream_of_or_within ISO MGI:1934178|MGI:2683089|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96190|MGI:96198|MGI:96209 (PMID:10559485), (PMID:10885747), (PMID:11311170), (PMID:14623233) RGD PMID:10559485 PMID:10885747 PMID:11311170 PMID:14623233 NCBI chr10:81,248,313...81,251,261
Ensembl chr10:81,248,887...81,250,638 		JBrowse link
G Hoxb9 homeo box B9 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2150429|MGI:96180|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96199|MGI:96210 (PMID:10885747), (PMID:17626057), (PMID:9013929) 		GO_Central
RGD		 PMID:9013929 PMID:10885747 PMID:17626057 GO_REF:0000033 NCBI chr10:81,237,312...81,240,818
Ensembl chr10:81,237,312...81,240,818 		JBrowse link
G Hoxc10 homeo box C10 acts_upstream_of_or_within ISO
IEA 		MGI:96171|MGI:96202 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 7:134,103,741...134,108,966
Ensembl chr 7:134,103,643...134,108,966 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within ISO
IEA 		MGI:96172|MGI:96203 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 7:134,091,224...134,094,738
Ensembl chr 7:134,091,552...134,094,738 		JBrowse link
G Hoxc13 homeobox C13 acts_upstream_of_or_within ISO
IEA 		MGI:1926422 (PMID:9420327)
GO_REF:0000107 		RGD
Ensembl		 PMID:9420327 GO_REF:0000107 NCBI chr 7:134,058,640...134,065,479
Ensembl chr 7:134,058,640...134,064,800 		JBrowse link
G Hoxc4 homeo box C4 acts_upstream_of_or_within
involved_in 		ISO
IEA
IBA 		MGI:1857570|MGI:2150683 (PMID:8626021), (PMID:8660891)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:8626021 PMID:8660891 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:134,135,279...134,173,133
Ensembl chr 7:134,170,591...134,173,133 		JBrowse link
G Hoxc5 homeo box C5 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:96177|MGI:96186 (PMID:17626057) 		GO_Central
Ensembl
RGD		 PMID:17626057 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:134,150,988...134,154,410
Ensembl chr 7:134,150,988...134,154,410 		JBrowse link
G Hoxc6 homeo box C6 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:96178|MGI:96187 (PMID:17626057) 		GO_Central
Ensembl
RGD		 PMID:17626057 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:134,138,017...134,148,899
Ensembl chr 7:134,135,502...134,148,392 		JBrowse link
G Hoxc8 homeobox C8 acts_upstream_of_or_within ISO
IEA 		MGI:2149030|MGI:96189|MGI:96209 (PMID:11311170)
GO_REF:0000107 		RGD
Ensembl		 PMID:11311170 GO_REF:0000107 NCBI chr 7:134,127,937...134,130,503
Ensembl chr 7:134,127,913...134,130,503 		JBrowse link
G Hoxc9 homeobox C9 acts_upstream_of_or_within ISO
IEA 		MGI:2150685|MGI:96180|MGI:96190|MGI:96210 (PMID:17626057), (PMID:7547473)
GO_REF:0000107 		RGD
Ensembl		 PMID:7547473 PMID:17626057 GO_REF:0000107 NCBI chr 7:134,118,817...134,121,497
Ensembl chr 7:134,118,817...134,121,492 		JBrowse link
G Hoxd10 homeo box D10 acts_upstream_of_or_within ISO
IEA 		MGI:96171|MGI:96192|MGI:96210 (PMID:10642795), (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:10642795 PMID:12869760 GO_REF:0000107 NCBI chr 3:59,594,516...59,597,725
Ensembl chr 3:59,594,516...59,597,725 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172|MGI:96193 (PMID:12869760) RGD PMID:12869760 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Hoxd13 homeo box D13 acts_upstream_of_or_within ISO
IEA 		MGI:1857871 (PMID:8106170)
GO_REF:0000107 		RGD
Ensembl		 PMID:8106170 GO_REF:0000107 NCBI chr 3:59,570,647...59,573,963
Ensembl chr 3:59,570,646...59,573,963 		JBrowse link
G Hoxd3 homeo box D3 acts_upstream_of_or_within ISO
IEA 		MGI:1857959|MGI:96175|MGI:96184 (PMID:7910549), (PMID:7913519), (PMID:9441667)
GO_REF:0000107 		RGD
Ensembl		 PMID:7910549 PMID:7913519 PMID:9441667 GO_REF:0000107 NCBI chr 3:59,638,708...59,650,282
Ensembl chr 3:59,638,708...59,650,282 		JBrowse link
G Hoxd4 homeo box D4 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:2151488|MGI:96176 (PMID:7628700), (PMID:7750651) 		GO_Central
Ensembl
RGD		 PMID:7628700 PMID:7750651 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:59,614,464...59,634,042
Ensembl chr 3:59,614,464...59,631,528 		JBrowse link
G Hoxd8 homeobox D8 acts_upstream_of_or_within ISO MGI:2151815|MGI:96189|MGI:96198 (PMID:11311170) RGD PMID:11311170 NCBI chr 3:80,015,223...80,017,789
Ensembl chr 3:59,607,996...59,610,361 		JBrowse link
G Hoxd9 homeo box D9 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:2150414|MGI:96180|MGI:96190|MGI:96199|MGI:96202 (PMID:10642795), (PMID:17626057), (PMID:8625797) 		GO_Central
Ensembl
RGD		 PMID:8625797 PMID:10642795 PMID:17626057 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:59,600,575...59,602,755
Ensembl chr 3:59,600,575...59,602,754 		JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO MGI:1857180 (PMID:16109169) RGD PMID:16109169 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070 		JBrowse link
G Ifitm1 interferon induced transmembrane protein 1 acts_upstream_of_or_within ISO (PMID:15857914) RGD PMID:15857914 NCBI chr 1:196,067,163...196,069,169
Ensembl chr 1:196,067,963...196,069,169 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:2157527|MGI:3027342 (PMID:12701101), (PMID:15930098) RGD PMID:12701101 PMID:15930098 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:1861960 (PMID:10220415) RGD PMID:10220415 NCBI chr10:37,725,930...37,761,183
Ensembl chr10:37,725,970...37,759,191 		JBrowse link
G Kmt2a lysine methyltransferase 2A acts_upstream_of_or_within ISO
IEA 		MGI:1932339 (PMID:15741318), (PMID:16618927)
GO_REF:0000107 		RGD
Ensembl		 PMID:15741318 PMID:16618927 GO_REF:0000107 NCBI chr 8:45,116,763...45,193,320
Ensembl chr 8:45,118,814...45,193,181 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:1347476 (PMID:10498685) 		UniProt
Ensembl
RGD		 PMID:10498685 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO
IEA 		MGI:1298218 (PMID:15142971)
GO_REF:0000107 		RGD
Ensembl		 PMID:15142971 GO_REF:0000107 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1278315|MGI:1861309|MGI:2156191 (PMID:15142971), (PMID:16126904), (PMID:19795512) RGD PMID:15142971 PMID:16126904 PMID:19795512 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Mllt3 MLLT3, super elongation complex subunit acts_upstream_of_or_within ISO
IEA 		MGI:2388982 (PMID:12242306)
GO_REF:0000107 		RGD
Ensembl		 PMID:12242306 GO_REF:0000107 NCBI chr 5:102,259,075...102,515,447
Ensembl chr 5:102,260,011...102,515,361 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:97169 (PMID:21465616) RGD PMID:21465616 NCBI chr14:72,961,036...72,964,970
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:97168 (PMID:21465616)
GO_REF:0000107 		RGD
Ensembl		 PMID:21465616 GO_REF:0000107 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Neurod1 neuronal differentiation 1 acts_upstream_of_or_within ISO MGI:2148229 (PMID:16368089) RGD PMID:16368089 NCBI chr 3:64,359,554...64,363,526
Ensembl chr 3:64,359,395...64,363,649 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA 		MGI:106676|MGI:2158732|MGI:2180793|MGI:2656539|MGI:3056345 (PMID:11311163), (PMID:11418863), (PMID:15004567), (PMID:15302604), (PMID:16496285)
GO_REF:0000107 		RGD
Ensembl		 PMID:11311163 PMID:11418863 PMID:15004567 PMID:15302604 PMID:16496285 GO_REF:0000107 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Nr2f2 nuclear receptor subfamily 2, group F, member 2 acts_upstream_of_or_within ISO
IEA 		MGI:3579117|MGI:3579118 (PMID:15829524)
GO_REF:0000107 		RGD
Ensembl		 PMID:15829524 GO_REF:0000107 NCBI chr 1:124,008,282...124,022,521
Ensembl chr 1:124,009,181...124,022,031 		JBrowse link
G Otx1 orthodenticle homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:97451 (PMID:15105370)
GO_REF:0000107 		RGD
Ensembl		 PMID:15105370 GO_REF:0000107 NCBI chr14:96,082,146...96,089,161
Ensembl chr14:96,082,151...96,089,086 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:109448|MGI:1857502|MGI:2661067 (PMID:11412024), (PMID:12652306), (PMID:9501024) RGD PMID:9501024 PMID:11412024 PMID:12652306 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA 		MGI:1856155|MGI:95388 (PMID:12196586), (PMID:15917450)
GO_REF:0000107 		RGD
Ensembl		 PMID:12196586 PMID:15917450 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:2155612 (PMID:11566859)
GO_REF:0000107 		RGD
Ensembl		 PMID:11566859 GO_REF:0000107 NCBI chr13:82,811,664...83,121,447
Ensembl chr13:80,278,770...80,588,594 		JBrowse link
G Pcgf2 polycomb group ring finger 2 acts_upstream_of_or_within ISO MGI:1857633|MGI:1932339 (PMID:15741318), (PMID:8625838) RGD PMID:8625838 PMID:15741318 NCBI chr10:82,682,563...82,694,563
Ensembl chr10:82,683,553...82,693,406 		JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in ISO
IEA 		(PMID:18519639)
GO_REF:0000107 		RGD
Ensembl		 PMID:18519639 GO_REF:0000107 NCBI chr 1:214,837,847...215,267,626
Ensembl chr 1:214,837,927...215,267,600 		JBrowse link
G Pds5a PDS5 cohesin associated factor A acts_upstream_of_or_within ISO MGI:3847257 (PMID:19412548) RGD PMID:19412548 NCBI chr14:42,551,653...42,651,074
Ensembl chr14:42,552,647...42,648,669 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO
IEA 		MGI:1931079|MGI:88360 (PMID:11784046), (PMID:8388780)
GO_REF:0000107 		RGD
Ensembl		 PMID:8388780 PMID:11784046 GO_REF:0000107 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Ring1 ring finger protein 1 acts_upstream_of_or_within ISO MGI:1926913|MGI:99150 (PMID:11060235), (PMID:16624538) RGD PMID:11060235 PMID:16624538 NCBI chr20:4,832,013...4,835,516
Ensembl chr20:4,830,053...4,833,620 		JBrowse link
G Scmh1 Scm polycomb group protein homolog 1 acts_upstream_of_or_within ISO
IEA 		MGI:3706668 (PMID:17215307)
GO_REF:0000107 		RGD
Ensembl		 PMID:17215307 GO_REF:0000107 NCBI chr 5:133,991,167...134,115,893
Ensembl chr 5:133,990,520...134,122,105 		JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 acts_upstream_of_or_within ISO MGI:96995|MGI:99161 (PMID:15741318) RGD PMID:15741318 NCBI chr 9:56,492,403...56,532,300
Ensembl chr 9:56,492,403...56,532,300 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:108078 (PMID:16467359)
GO_REF:0000107 		RGD
Ensembl		 PMID:16467359 GO_REF:0000107 NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:892014 (PMID:16467359)
GO_REF:0000107 		RGD
Ensembl		 PMID:16467359 GO_REF:0000107 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA 		MGI:1857796 (PMID:11118883)
GO_REF:0000107 		RGD
Ensembl		 PMID:11118883 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smad2 SMAD family member 2 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
MGI:1857691|MGI:2668416 (PMID:11418863), (PMID:12842913), (PMID:9529255) 		UniProt
RGD		 PMID:9529255 PMID:11418863 PMID:12842913 GO_REF:0000024 NCBI chr18:69,849,884...69,918,926
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO
IEA 		MGI:1857691|MGI:2656539|MGI:2668393 (PMID:15215210)
GO_REF:0000107 		RGD
Ensembl		 PMID:15215210 GO_REF:0000107 NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO
IEA 		MGI:2176256|MGI:2450929 (PMID:22987639)
GO_REF:0000107 		RGD
Ensembl		 PMID:22987639 GO_REF:0000107 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
MGI:104686|MGI:2179191 (PMID:15084464), (PMID:16399080) 		UniProt
RGD		 PMID:15084464 PMID:16399080 GO_REF:0000024 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO
IEA 		MGI:3042261|MGI:3042262|MGI:3042264 (PMID:15384171)
GO_REF:0000107 		RGD
Ensembl		 PMID:15384171 GO_REF:0000107 NCBI chr 1:52,298,104...52,309,813
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO
IEA 		MGI:1929775 (PMID:8955271)
GO_REF:0000107 		RGD
Ensembl		 PMID:8955271 GO_REF:0000107 NCBI chr 3:140,638,984...140,644,766
Ensembl chr 3:140,638,984...140,644,766 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 acts_upstream_of_or_within ISO
IEA 		MGI:87912 (PMID:16845371)
GO_REF:0000107 		RGD
Ensembl		 PMID:16845371 GO_REF:0000107 NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777 		JBrowse link
G Tshz1 teashirt zinc finger homeobox 1 acts_upstream_of_or_within ISO MGI:3721421 (PMID:17586487) RGD PMID:17586487 NCBI chr18:77,376,399...77,452,815
Ensembl chr18:77,377,394...77,453,509 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO
IEA 		MGI:2388066 (PMID:19334287)
GO_REF:0000107 		RGD
Ensembl		 PMID:19334287 GO_REF:0000107 NCBI chr 4:161,590,478...161,632,244
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:1857642 (PMID:18849982)
GO_REF:0000107 		RGD
Ensembl		 PMID:18849982 GO_REF:0000107 NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378 		JBrowse link
G Wnt3 Wnt family member 3 acts_upstream_of_or_within ISO MGI:2178826 (PMID:10431240) RGD PMID:10431240 NCBI chr10:88,680,198...88,724,170
Ensembl chr10:88,680,248...88,724,099 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA 		(PMID:15148409)
GO_REF:0000107 		RGD
Ensembl		 PMID:15148409 GO_REF:0000107 NCBI chr10:44,034,174...44,078,366
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA 		MGI:1857617 (PMID:15073149), (PMID:19795512)
GO_REF:0000107 		RGD
Ensembl		 PMID:15073149 PMID:19795512 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Yy1 YY1 transcription factor acts_upstream_of_or_within ISO
IEA 		MGI:1101770|MGI:2445451 (PMID:16624538)
GO_REF:0000107 		RGD
Ensembl		 PMID:16624538 GO_REF:0000107 NCBI chr 6:127,706,739...127,736,499
Ensembl chr 6:127,707,596...127,732,747 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within ISO
IEA 		MGI:2182708 (PMID:10835630)
GO_REF:0000107 		RGD
Ensembl		 PMID:10835630 GO_REF:0000107 NCBI chr 8:48,989,376...49,177,011
Ensembl chr 8:48,994,566...49,177,011 		JBrowse link
G Zic3 Zic family member 3 acts_upstream_of_or_within ISO MGI:97359 (PMID:16496285) RGD PMID:16496285 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aurka aurora kinase A acts_upstream_of_or_within ISO
IEA 		MGI:3836420 (PMID:22939930)
GO_REF:0000107 		RGD
Ensembl		 PMID:22939930 GO_REF:0000107 NCBI chr 3:181,546,742...181,562,890
Ensembl chr 3:161,128,313...161,144,390 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		MGI:104903 (PMID:10964473)
GO_REF:0000107 		RGD
Ensembl		 PMID:10964473 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Cdx2 caudal type homeo box 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142 		JBrowse link
G Cdx4 caudal type homeo box 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:68,326,874...68,335,461
Ensembl chr  X:68,326,874...68,335,461 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO
IEA 		MGI:107405|MGI:98658 (PMID:15004567), (PMID:18241853)
GO_REF:0000107 		RGD
Ensembl		 PMID:15004567 PMID:18241853 GO_REF:0000107 NCBI chr 5:97,306,427...97,309,783
Ensembl chr 5:97,306,431...97,309,783 		JBrowse link
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO MGI:1201414 (PMID:18241853) RGD PMID:18241853 NCBI chr 8:119,803,182...119,808,714
Ensembl chr 8:110,925,024...110,930,308 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		MGI:2148590 (PMID:10662781)
GO_REF:0000107 		RGD
Ensembl		 PMID:10662781 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Ddit3 DNA-damage inducible transcript 3 involved_in ISO
IEA 		(PMID:16434966)
GO_REF:0000107 		RGD
Ensembl		 PMID:16434966 GO_REF:0000107 NCBI chr 7:65,001,695...65,006,517
Ensembl chr 7:63,116,380...63,121,201 		JBrowse link
G Gpc3 glypican 3 acts_upstream_of_or_within ISO
IEA 		MGI:88180 (PMID:10964473)
GO_REF:0000107 		RGD
Ensembl		 PMID:10964473 GO_REF:0000107 NCBI chr  X:131,868,986...132,236,824
Ensembl chr  X:131,868,990...132,236,798 		JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO MGI:1341884 (PMID:15680351) RGD PMID:15680351 NCBI chr 2:93,096,605...93,100,316
Ensembl chr 2:93,095,498...93,100,312 		JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 acts_upstream_of_or_within ISO
IEA 		MGI:1341800 (PMID:15680351)
GO_REF:0000107 		RGD
Ensembl		 PMID:15680351 GO_REF:0000107 NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218 		JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within ISO
IEA 		MGI:2449177 (PMID:12490556)
GO_REF:0000107 		RGD
Ensembl		 PMID:12490556 GO_REF:0000107 NCBI chr 1:244,864,168...244,890,007
Ensembl chr 1:244,877,173...244,890,013 		JBrowse link
G Lefty1 left right determination factor 1 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:1201414 (PMID:15004567) 		GO_Central
Ensembl
RGD		 PMID:15004567 GO_REF:0000033 GO_REF:0000107 NCBI chr13:92,649,226...92,659,722
Ensembl chr13:92,656,323...92,659,720 		JBrowse link
G Lefty2 Left-right determination factor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:92,610,185...92,620,918
Ensembl chr13:92,615,360...92,619,880 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:2443342 (PMID:10529425) 		UniProt
Ensembl
RGD		 PMID:10529425 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA 		MGI:2158732 (PMID:11311163)
GO_REF:0000107 		RGD
Ensembl		 PMID:11311163 GO_REF:0000107 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856621|MGI:99783 (PMID:10529425)
GO_REF:0000107 		RGD
Ensembl		 PMID:10529425 GO_REF:0000107 NCBI chr 9:55,975,574...56,044,325
Ensembl chr 9:55,975,667...56,044,464 		JBrowse link
G Rnf2 ring finger protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:2447529 (PMID:12183370)
GO_REF:0000107 		RGD
Ensembl		 PMID:12183370 GO_REF:0000107 NCBI chr13:66,103,943...66,136,038
Ensembl chr13:63,554,862...63,583,099 		JBrowse link
G Six2 SIX homeobox 2 involved_in ISO
IEA 		(PMID:18321982)
GO_REF:0000107 		RGD
Ensembl		 PMID:18321982 GO_REF:0000107 NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:11731796) RGD PMID:11731796 NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO MGI:3044914 (PMID:15155583) RGD PMID:15155583 NCBI chr 8:88,652,054...88,680,081
Ensembl chr 8:88,652,054...88,680,058 		JBrowse link
G Wls Wnt ligand secretion mediator involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:19841259) 		UniProt
Ensembl
RGD		 PMID:19841259 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:248,931,885...249,047,248
Ensembl chr 2:248,931,903...249,048,298 		JBrowse link
G Wnt3 Wnt family member 3 acts_upstream_of_or_within ISO MGI:2450902 (PMID:18028899) RGD PMID:18028899 NCBI chr10:88,680,198...88,724,170
Ensembl chr10:88,680,248...88,724,099 		JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO MGI:1934206 (PMID:9790191) RGD PMID:9790191 NCBI chr 8:119,803,182...119,808,714
Ensembl chr 8:110,925,024...110,930,308 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO
IEA 		MGI:3580390 (PMID:15870281)
GO_REF:0000107 		RGD
Ensembl		 PMID:15870281 GO_REF:0000107 NCBI chr 7:54,597,182...54,678,656
Ensembl chr 7:52,711,257...52,792,743 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:9054360) RGD PMID:9054360 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Tasor transcription activation suppressor involved_in ISO
IEA 		(PMID:28839193)
GO_REF:0000107 		RGD
Ensembl		 PMID:28839193 GO_REF:0000107 NCBI chr16:2,612,942...2,669,870
Ensembl chr16:2,603,936...2,667,292 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:9207801) 		UniProt
Ensembl
RGD		 PMID:9207801 GO_REF:0000024 GO_REF:0000107 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO MGI:3044616 (PMID:14668413) RGD PMID:14668413 NCBI chr 4:106,238,892...106,404,012
Ensembl chr 4:104,680,739...104,845,287 		JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO 		GO_REF:0000107
(PMID:9054360) 		Ensembl
RGD		 PMID:9054360 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98956 (PMID:11029008) RGD PMID:11029008 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO
IEA 		MGI:4839484 (PMID:20630950)
GO_REF:0000107 		RGD
Ensembl		 PMID:20630950 GO_REF:0000107 NCBI chr  X:70,444,615...70,467,780
Ensembl chr  X:66,404,760...66,428,387 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA 		MGI:1298218 (PMID:11029008)
GO_REF:0000107 		RGD
Ensembl		 PMID:11029008 GO_REF:0000107 NCBI chr10:44,034,174...44,078,366
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
compartment pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO MGI:1861919 (PMID:12001066) RGD PMID:12001066 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dll3 delta like canonical Notch ligand 3 acts_upstream_of_or_within ISO MGI:1857008 (PMID:12001066) RGD PMID:12001066 NCBI chr 1:83,562,011...83,570,008
Ensembl chr 1:83,562,014...83,569,750 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO
IEA 		MGI:1933734 (PMID:12001066)
GO_REF:0000107 		RGD
Ensembl		 PMID:12001066 GO_REF:0000107 NCBI chr12:14,030,551...14,038,996
Ensembl chr12:14,018,333...14,039,008 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857877 (PMID:12001066)
GO_REF:0000107 		RGD
Ensembl		 PMID:12001066 GO_REF:0000107 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:108078|MGI:1860298 (PMID:18257070)
GO_REF:0000107 		RGD
Ensembl		 PMID:18257070 GO_REF:0000107 NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
embryonic heart tube anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:3583785 (PMID:16314491)
GO_REF:0000107 		RGD
Ensembl		 PMID:16314491 GO_REF:0000107 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397 		JBrowse link
G Foxh1 forkhead box H1 acts_upstream_of_or_within ISO
IEA 		MGI:2179442 (PMID:15363409)
GO_REF:0000107 		RGD
Ensembl		 PMID:15363409 GO_REF:0000107 NCBI chr 7:108,387,969...108,391,566
Ensembl chr 7:108,387,969...108,390,049 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO MGI:2386265 (PMID:9136932) RGD PMID:9136932 NCBI chr15:37,459,601...37,531,291
Ensembl chr15:37,459,601...37,505,636 		JBrowse link
forebrain anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fezf1 Fez family zinc finger 1 acts_upstream_of_or_within ISO
IEA 		MGI:1859823 (PMID:16971467)
GO_REF:0000107 		RGD
Ensembl		 PMID:16971467 GO_REF:0000107 NCBI chr 4:51,762,751...51,766,078
Ensembl chr 4:51,762,751...51,766,078 		JBrowse link
G Fezf2 Fez family zinc finger 2 acts_upstream_of_or_within ISO
IEA 		MGI:1920441 (PMID:16971467)
GO_REF:0000107 		RGD
Ensembl		 PMID:16971467 GO_REF:0000107 NCBI chr15:12,768,614...12,777,554
Ensembl chr15:12,773,762...12,777,554 		JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO MGI:2450901|MGI:98953 (PMID:18094027) RGD PMID:18094027 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO
IEA 		MGI:102764 (PMID:18094027)
GO_REF:0000107 		RGD
Ensembl		 PMID:18094027 GO_REF:0000107 NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651 		JBrowse link
forebrain-midbrain boundary formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA 		MGI:1856155|MGI:1856158 (PMID:9169845)
GO_REF:0000107 		RGD
Ensembl		 PMID:9169845 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
lung induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		MGI:2148567|MGI:2148569 (PMID:19686689), (PMID:19805295)
GO_REF:0000107 		RGD
Ensembl		 PMID:19686689 PMID:19805295 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Wnt2 Wnt family member 2 acts_upstream_of_or_within ISO MGI:1261834 (PMID:19686689) RGD PMID:19686689 NCBI chr 4:46,328,408...46,374,673
Ensembl chr 4:46,333,998...46,374,402 		JBrowse link
G Wnt2b Wnt family member 2B acts_upstream_of_or_within ISO
IEA 		MGI:98954 (PMID:19686689)
GO_REF:0000107 		RGD
Ensembl		 PMID:19686689 GO_REF:0000107 NCBI chr 2:192,454,226...192,468,599
Ensembl chr 2:192,453,824...192,470,308 		JBrowse link
midbrain-hindbrain boundary development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857163 (PMID:15607945)
GO_REF:0000107 		RGD
Ensembl		 PMID:15607945 GO_REF:0000107 NCBI chr13:31,750,892...31,756,477
Ensembl chr13:31,751,545...31,755,943 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA 		MGI:2150347 (PMID:17601531)
GO_REF:0000107 		RGD
Ensembl		 PMID:17601531 GO_REF:0000107 NCBI chr 1:244,584,477...244,590,578
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1857634 (PMID:16651541)
GO_REF:0000107 		RGD
Ensembl		 PMID:16651541 GO_REF:0000107 NCBI chr 9:90,509,633...90,512,212
Ensembl chr 9:90,509,633...90,512,212 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191 (PMID:11029008), (PMID:19795512) RGD PMID:11029008 PMID:19795512 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857490 (PMID:2205396)
GO_REF:0000107 		RGD
Ensembl		 PMID:2205396 GO_REF:0000107 NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651 		JBrowse link
midbrain-hindbrain boundary initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssbp3 single stranded DNA binding protein 3 involved_in IEA
ISO 		GO_REF:0000107
(PMID:15857913) 		Ensembl
RGD		 PMID:15857913 GO_REF:0000107 NCBI chr 5:121,691,370...121,828,035
Ensembl chr 5:121,691,393...121,827,992 		JBrowse link
midbrain-hindbrain boundary maturation during brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856382 (PMID:8555108)
GO_REF:0000107 		RGD
Ensembl		 PMID:8555108 GO_REF:0000107 NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651 		JBrowse link
midbrain-hindbrain boundary morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1857634 (PMID:16651541)
GO_REF:0000107 		RGD
Ensembl		 PMID:16651541 GO_REF:0000107 NCBI chr 9:90,509,633...90,512,212
Ensembl chr 9:90,509,633...90,512,212 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA 		MGI:104877 (PMID:11500373)
GO_REF:0000107 		RGD
Ensembl		 PMID:11500373 GO_REF:0000107 NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Hes3 hes family bHLH transcription factor 3 acts_upstream_of_or_within ISO MGI:104853 (PMID:11522634) RGD PMID:11522634 NCBI chr 5:162,793,611...162,799,578
Ensembl chr 5:162,794,367...162,796,261 		JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (PMID:21220025) RGD PMID:21220025 NCBI chr12:33,566,530...33,701,366
Ensembl chr12:33,574,657...33,701,355 		JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fuz fuzzy planar cell polarity protein involved_in ISS
ISO 		GO_REF:0000024
(PMID:23806618) 		UniProt
RGD		 PMID:23806618 GO_REF:0000024 NCBI chr 1:95,379,542...95,384,532
Ensembl chr 1:95,379,587...95,384,530 		JBrowse link
G Ofd1 Ofd1 centriole and centriolar satellite protein involved_in ISO
IEA 		(PMID:23806618)
GO_REF:0000107 		RGD
Ensembl		 PMID:23806618 GO_REF:0000107 NCBI chr  X:28,015,347...28,056,115
Ensembl chr  X:28,015,347...28,056,110 		JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:23072809) 		UniProt
Ensembl
RGD		 PMID:23072809 GO_REF:0000024 GO_REF:0000107 NCBI chr12:14,030,551...14,038,996
Ensembl chr12:14,018,333...14,039,008 		JBrowse link
neural plate anterior/posterior regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr2 cadherin, EGF LAG seven-pass G-type receptor 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:12755329) 		Ensembl
RGD		 PMID:12755329 GO_REF:0000107 NCBI chr 2:196,029,206...196,053,848
Ensembl chr 2:196,029,434...196,053,845 		JBrowse link
G Nog noggin involved_in IEA
ISO 		GO_REF:0000107
(PMID:8582276) 		Ensembl
RGD		 PMID:8582276 GO_REF:0000107 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Tbx18 T-box transcription factor 18 involved_in ISO (PMID:17584735) RGD PMID:17584735 NCBI chr 8:88,652,054...88,680,081
Ensembl chr 8:88,652,054...88,680,058 		JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family, member 6 involved_in ISO (PMID:21397848) RGD PMID:21397848 NCBI chr10:45,078,081...45,080,732
Ensembl chr10:44,577,675...44,581,077 		JBrowse link
G Tdrd1 tudor domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:265,876,858...265,924,357
Ensembl chr 1:255,875,887...255,915,871 		JBrowse link
G Tdrd5 tudor domain containing 5 involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:21383078)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:21383078 GO_REF:0000024 GO_REF:0000107 NCBI chr13:70,944,441...70,992,345
Ensembl chr13:68,394,061...68,441,319 		JBrowse link
G Tdrd6 tudor domain containing 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:24,841,259...24,856,621
Ensembl chr 9:17,344,026...17,359,344 		JBrowse link
G Tdrd7 tudor domain containing 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:65,034,317...65,108,165
Ensembl chr 5:60,238,678...60,312,544 		JBrowse link
G Tdrkh tudor and KH domain containing involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:184,736,255...184,760,534
Ensembl chr 2:182,049,215...182,070,755 		JBrowse link
polarity specification of anterior/posterior axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:11044396)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:11044396 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within ISO
IEA 		(PMID:16256739)
GO_REF:0000107 		RGD
Ensembl		 PMID:16256739 GO_REF:0000107 NCBI chr18:26,137,690...26,143,283
Ensembl chr18:26,137,690...26,143,283 		JBrowse link
primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ets2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within ISO
IEA 		MGI:1891557 (PMID:23552073)
GO_REF:0000107 		RGD
Ensembl		 PMID:23552073 GO_REF:0000107 NCBI chr11:35,021,536...35,038,322
Ensembl chr11:35,021,596...35,038,319 		JBrowse link
G Foxa2 forkhead box A2 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
MGI:1857725 (PMID:11291865) 		UniProt
RGD		 PMID:11291865 GO_REF:0000024 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO
IEA 		MGI:3612535 (PMID:16368929)
GO_REF:0000107 		RGD
Ensembl		 PMID:16368929 GO_REF:0000107 NCBI chr 4:155,831,572...155,835,953
Ensembl chr 4:155,830,909...155,835,937 		JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO
IEA 		MGI:4999724|MGI:97359 (PMID:21445260)
GO_REF:0000107 		RGD
Ensembl		 PMID:21445260 GO_REF:0000107 NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within 		ISS
ISO
IEA 		GO_REF:0000024
MGI:1857502|MGI:1857848 (PMID:11291865)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:11291865 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98958 (PMID:19795512) RGD PMID:19795512 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:96086 (PMID:14511481), (PMID:21445260) 		Ensembl
RGD		 PMID:14511481 PMID:21445260 GO_REF:0000107 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within
involved_in 		ISO MGI:1857502 (PMID:11291865) RGD PMID:11291865 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA
ISO 		GO_REF:0000107
MGI:4356107 (PMID:19706528) 		Ensembl
RGD		 PMID:19706528 GO_REF:0000107 NCBI chr 7:124,639,142...124,735,027
Ensembl chr 7:124,639,142...124,658,113 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO
IEA 		MGI:2158696 (PMID:9799237)
GO_REF:0000107 		RGD
Ensembl		 PMID:9799237 GO_REF:0000107 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA 		MGI:1298218 (PMID:19795512)
GO_REF:0000107 		RGD
Ensembl		 PMID:19795512 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:2180720 (PMID:16397896) RGD PMID:16397896 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
regulation of cell migration involved in somitogenic axis elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha involved_in ISO
IBA 		UniProtKB:A0A803JG39 (PMID:15687260)
GO_REF:0000033 		RGD
GO_Central		 PMID:15687260 GO_REF:0000033 NCBI chr 8:101,703,512...101,841,530
Ensembl chr 8:101,704,778...101,841,502 		JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdx1 caudal type homeo box 1 involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:22015720)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:22015720 GO_REF:0000024 GO_REF:0000107 NCBI chr18:54,472,587...54,490,913
Ensembl chr18:54,473,444...54,490,814 		JBrowse link
G Cdx2 caudal type homeo box 2 involved_in ISO
IEA 		(PMID:22015720)
GO_REF:0000107 		RGD
Ensembl		 PMID:22015720 GO_REF:0000107 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:26114479) 		UniProt
RGD		 PMID:26114479 GO_REF:0000024 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 acts_upstream_of_or_within ISO
IEA 		MGI:3512139|MGI:97487 (PMID:17974128)
GO_REF:0000107 		RGD
Ensembl		 PMID:17974128 GO_REF:0000107 NCBI chr 1:223,317,543...223,324,131
Ensembl chr 1:223,317,642...223,324,131 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:19061953)
GO_REF:0000107
MGI:1933734 (PMID:19779553) 		RGD
Ensembl		 PMID:19061953 PMID:19779553 GO_REF:0000107 NCBI chr12:14,030,551...14,038,996
Ensembl chr12:14,018,333...14,039,008 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857230 (PMID:7789282)
GO_REF:0000107 		RGD
Ensembl		 PMID:7789282 GO_REF:0000107 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:1330307|MGI:1856173 (PMID:17974128) RGD PMID:17974128 NCBI chr 9:79,567,455...79,664,042
Ensembl chr 9:79,568,634...79,664,042 		JBrowse link
rostrocaudal neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in ISO (PMID:20093472) RGD PMID:20093472 NCBI chr  X:10,183,983...10,210,948
Ensembl chr  X:10,183,068...10,210,918 		JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO
IEA 		MGI:1857632 (PMID:8887324)
GO_REF:0000107 		RGD
Ensembl		 PMID:8887324 GO_REF:0000107 NCBI chr17:81,332,175...81,341,625
Ensembl chr17:81,332,214...81,388,690 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO
IEA 		MGI:2179440 (PMID:19913509)
GO_REF:0000107 		RGD
Ensembl		 PMID:19913509 GO_REF:0000107 NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO
IEA 		MGI:3822451 (PMID:18794329)
GO_REF:0000107 		RGD
Ensembl		 PMID:18794329 GO_REF:0000107 NCBI chr13:30,670,792...30,770,213
Ensembl chr13:30,669,764...30,768,360 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:1857725 (PMID:11291865) RGD PMID:11291865 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO
IEA 		MGI:3612535 (PMID:16368929)
GO_REF:0000107 		RGD
Ensembl		 PMID:16368929 GO_REF:0000107 NCBI chr 4:155,831,572...155,835,953
Ensembl chr 4:155,830,909...155,835,937 		JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO
IEA 		MGI:5448825 (PMID:22949634)
GO_REF:0000107 		RGD
Ensembl		 PMID:22949634 GO_REF:0000107 NCBI chr  X:4,337,466...4,477,100
Ensembl chr  X:4,337,750...4,477,062 		JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857502|MGI:1857848 (PMID:11291865)
GO_REF:0000107 		RGD
Ensembl		 PMID:11291865 GO_REF:0000107 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:133,738,357...133,739,875
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:3580268 (PMID:20346937) 		GO_Central
RGD		 PMID:20346937 GO_REF:0000033 NCBI chr 1:133,756,601...133,759,207
Ensembl chr 1:133,756,601...133,759,198 		JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of_or_within ISO
IEA 		MGI:5438570 (PMID:21998026)
GO_REF:0000107 		RGD
Ensembl		 PMID:21998026 GO_REF:0000107 NCBI chr 3:7,992,582...7,995,136
Ensembl chr 3:7,992,552...7,995,133 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:1857502 (PMID:11291865) RGD PMID:11291865 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO MGI:2685968 (PMID:20346937) RGD PMID:20346937 NCBI chr  X:103,436,731...103,440,904
Ensembl chr  X:103,436,729...103,443,349 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in 		ISO MGI:3614797 (PMID:20346937)
(PMID:16326386) 		RGD PMID:16326386 PMID:20346937 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:87,974,776...87,978,969 		JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO
IEA 		MGI:1858049 (PMID:9420335)
GO_REF:0000107 		RGD
Ensembl		 PMID:9420335 GO_REF:0000107 NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within ISO
IEA 		(PMID:20346937)
GO_REF:0000107 		RGD
Ensembl		 PMID:20346937 GO_REF:0000107 NCBI chr 1:181,387,851...181,392,762
Ensembl chr 1:181,388,684...181,392,593 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:4456438 (PMID:20178780)
GO_REF:0000107 		RGD
Ensembl		 PMID:20178780 GO_REF:0000107 NCBI chr12:32,052,542...32,061,628
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cobl cordon-bleu WH2 repeat protein involved_in IEA
ISO 		GO_REF:0000107
(PMID:7586755) 		Ensembl
RGD		 PMID:7586755 GO_REF:0000107 NCBI chr14:86,828,137...87,060,682
Ensembl chr14:86,828,139...87,060,800 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO MGI:3038950 (PMID:14960495) RGD PMID:14960495 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Meox1 mesenchyme homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:103219 (PMID:12925591)
GO_REF:0000107 		RGD
Ensembl		 PMID:12925591 GO_REF:0000107 NCBI chr10:86,818,450...86,837,563
Ensembl chr10:86,818,478...86,837,660 		JBrowse link
G Meox2 mesenchyme homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:103220 (PMID:12925591)
GO_REF:0000107 		RGD
Ensembl		 PMID:12925591 GO_REF:0000107 NCBI chr 6:53,856,760...53,917,467
Ensembl chr 6:53,856,758...53,917,467 		JBrowse link
somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi1 abl-interactor 1 acts_upstream_of_or_within ISO
IEA 		MGI:3578145 (PMID:15755804)
GO_REF:0000107 		RGD
Ensembl		 PMID:15755804 GO_REF:0000107 NCBI chr17:85,098,837...85,179,829
Ensembl chr17:85,098,550...85,179,792 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO MGI:1100864|MGI:1857891 (PMID:15872003) RGD PMID:15872003 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO MGI:104779 (PMID:16687486) RGD PMID:16687486 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437 		JBrowse link
G Axin2 axin 2 acts_upstream_of_or_within ISO
IEA 		(PMID:12636920)
GO_REF:0000107 		RGD
Ensembl		 PMID:12636920 GO_REF:0000107 NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA 		MGI:2158343 (PMID:16943278)
GO_REF:0000107 		RGD
Ensembl		 PMID:16943278 GO_REF:0000107 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISS
ISO 		GO_REF:0000024
(PMID:22072575) 		CAFA
RGD		 PMID:22072575 GO_REF:0000024 NCBI chr 3:21,542,138...21,564,876
Ensembl chr 3:21,542,221...21,563,294 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO MGI:892014 (PMID:18257070) RGD PMID:18257070 NCBI chr 1:228,381,521...228,385,202
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
(PMID:23072809)
MGI:1096325 (PMID:15902259) 		UniProt
RGD		 PMID:15902259 PMID:23072809 GO_REF:0000024 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dll3 delta like canonical Notch ligand 3 acts_upstream_of_or_within ISO MGI:1857008 (PMID:15170697), (PMID:9272948) RGD PMID:9272948 PMID:15170697 NCBI chr 1:83,562,011...83,570,008
Ensembl chr 1:83,562,014...83,569,750 		JBrowse link
G Ep300 E1A binding protein p300 acts_upstream_of_or_within ISO MGI:1343101 (PMID:15937931) RGD PMID:15937931 NCBI chr 7:114,987,857...115,058,652
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO
IEA 		MGI:3822451 (PMID:18794329)
GO_REF:0000107 		RGD
Ensembl		 PMID:18794329 GO_REF:0000107 NCBI chr13:30,670,792...30,770,213
Ensembl chr13:30,669,764...30,768,360 		JBrowse link
G Foxb1 forkhead box B1 involved_in ISO (PMID:18064677) RGD PMID:18064677 NCBI chr 8:70,407,221...70,409,841
Ensembl chr 8:70,408,186...70,409,781 		JBrowse link
G Foxc1 forkhead box C1 involved_in ISO
IEA 		UniProtKB:Q61850 (PMID:11562355)
GO_REF:0000107 		RGD
Ensembl		 PMID:11562355 GO_REF:0000107 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
G Foxc2 forkhead box C2 involved_in ISO UniProtKB:Q61572 (PMID:11562355) RGD PMID:11562355 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO
IEA 		MGI:1929432 (PMID:11124112)
GO_REF:0000107 		RGD
Ensembl		 PMID:11124112 GO_REF:0000107 NCBI chr19:49,153,949...49,157,741
Ensembl chr19:49,153,699...49,157,738 		JBrowse link
G Hes7 hes family bHLH transcription factor 7 acts_upstream_of_or_within ISO MGI:2652222|MGI:3046536 (PMID:11641270), (PMID:15170214), (PMID:19779553) RGD PMID:11641270 PMID:15170214 PMID:19779553 NCBI chr10:53,824,124...53,828,934
Ensembl chr10:53,825,574...53,828,097 		JBrowse link
G Ifitm1 interferon induced transmembrane protein 1 acts_upstream_of_or_within ISO (PMID:15857914) RGD PMID:15857914 NCBI chr 1:196,067,163...196,069,169
Ensembl chr 1:196,067,963...196,069,169 		JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO
IEA 		MGI:1276116|MGI:3711317 (PMID:15937931), (PMID:17325035)
GO_REF:0000107 		RGD
Ensembl		 PMID:15937931 PMID:17325035 GO_REF:0000107 NCBI chr10:86,132,535...86,140,877
Ensembl chr10:85,632,216...85,640,166 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO
IEA 		MGI:1933764|MGI:98504 (PMID:10090727), (PMID:15545629)
GO_REF:0000107 		RGD
Ensembl		 PMID:10090727 PMID:15545629 GO_REF:0000107 NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:23072809)
MGI:3775061 (PMID:18234727) 		UniProt
Ensembl
RGD		 PMID:18234727 PMID:23072809 GO_REF:0000024 GO_REF:0000107 NCBI chr12:14,030,551...14,038,996
Ensembl chr12:14,018,333...14,039,008 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2673982|MGI:98958 (PMID:15469977), (PMID:19795512) RGD PMID:15469977 PMID:19795512 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO
IEA 		MGI:4839486 (PMID:20589884)
GO_REF:0000107 		RGD
Ensembl		 PMID:20589884 GO_REF:0000107 NCBI chr  X:70,444,615...70,467,780
Ensembl chr  X:66,404,760...66,428,387 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:104659|MGI:3580268 (PMID:15902259) RGD PMID:15902259 NCBI chr 1:133,756,601...133,759,207
Ensembl chr 1:133,756,601...133,759,198 		JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO
IEA 		MGI:3603514 (PMID:16000382)
GO_REF:0000107 		RGD
Ensembl		 PMID:16000382 GO_REF:0000107 NCBI chr18:2,075,309...2,199,774
Ensembl chr18:1,802,519...1,920,689 		JBrowse link
G Msgn1 mesogenin 1 acts_upstream_of_or_within ISO MGI:1933263 (PMID:11124811), (PMID:21750544) RGD PMID:11124811 PMID:21750544 NCBI chr 6:33,912,787...33,913,427
Ensembl chr 6:33,912,787...33,913,427 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO
IEA 		MGI:1857219|MGI:1857973|MGI:2449231 (PMID:10929709), (PMID:19531352), (PMID:8565825)
GO_REF:0000107 		RGD
Ensembl		 PMID:8565825 PMID:10929709 PMID:19531352 GO_REF:0000107 NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:42,802,946...42,806,177 		JBrowse link
G Myf6 myogenic factor 6 acts_upstream_of_or_within ISO
IEA 		MGI:1857220 (PMID:7588068)
GO_REF:0000107 		RGD
Ensembl		 PMID:7588068 GO_REF:0000107 NCBI chr 7:42,813,008...42,814,852
Ensembl chr 7:42,812,792...42,814,852 		JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:3578145 (PMID:16831833)
GO_REF:0000107 		RGD
Ensembl		 PMID:16831833 GO_REF:0000107 NCBI chr 3:85,824,333...85,898,748
Ensembl chr 3:65,417,453...65,492,217 		JBrowse link
G Nkx3-1 NK3 homeobox 1 involved_in ISO (PMID:9621431) RGD PMID:9621431 NCBI chr15:50,883,661...50,886,253
Ensembl chr15:44,473,851...44,476,441 		JBrowse link
G Nle1 notchless homolog 1 acts_upstream_of_or_within ISO
IEA 		MGI:2176174|MGI:5553357 (PMID:24875805)
GO_REF:0000107 		RGD
Ensembl		 PMID:24875805 GO_REF:0000107 NCBI chr10:67,834,059...67,844,771
Ensembl chr10:67,834,062...67,842,658 		JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of_or_within ISO MGI:5317888 (PMID:21795391) RGD PMID:21795391 NCBI chr 3:7,992,582...7,995,136
Ensembl chr 3:7,992,552...7,995,133 		JBrowse link
G Palb2 partner and localizer of BRCA2 acts_upstream_of_or_within ISO
IEA 		MGI:3801303 (PMID:20484223)
GO_REF:0000107 		RGD
Ensembl		 PMID:20484223 GO_REF:0000107 NCBI chr 1:176,665,076...176,689,053
Ensembl chr 1:176,665,076...176,688,990 		JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO
IEA 		MGI:3603176 (PMID:16093716)
GO_REF:0000107 		RGD
Ensembl		 PMID:16093716 GO_REF:0000107 NCBI chr 3:134,792,330...134,801,637
Ensembl chr 3:134,789,182...134,801,636 		JBrowse link
G Pcdh8 protocadherin 8 acts_upstream_of_or_within ISO
IEA 		(PMID:12591245)
GO_REF:0000107 		RGD
Ensembl		 PMID:12591245 GO_REF:0000107 NCBI chr15:55,198,470...55,203,039
Ensembl chr15:55,198,459...55,205,872 		JBrowse link
G Plxna2 plexin A2 involved_in ISO
IEA 		(PMID:19666519)
GO_REF:0000107 		RGD
Ensembl		 PMID:19666519 GO_REF:0000107 NCBI chr13:106,163,103...106,358,979
Ensembl chr13:106,163,103...106,358,979 		JBrowse link
G Pofut1 protein O-fucosyltransferase 1 acts_upstream_of_or_within ISO
IEA 		MGI:2662305 (PMID:12697902)
GO_REF:0000107 		RGD
Ensembl		 PMID:12697902 GO_REF:0000107 NCBI chr 3:141,708,618...141,735,558
Ensembl chr 3:141,708,644...141,734,786 		JBrowse link
G Poglut1 protein O-glucosyltransferase 1 acts_upstream_of_or_within ISO
IEA 		MGI:2137554 (PMID:9636176)
GO_REF:0000107 		RGD
Ensembl		 PMID:9636176 GO_REF:0000107 NCBI chr11:62,198,600...62,226,446
Ensembl chr11:62,198,513...62,226,434 		JBrowse link
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha involved_in ISO
IBA 		UniProtKB:A0A803JG39 (PMID:15687260)
GO_REF:0000033 		RGD
GO_Central		 PMID:15687260 GO_REF:0000033 NCBI chr 8:101,703,512...101,841,530
Ensembl chr 8:101,704,778...101,841,502 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within ISO
IEA 		MGI:107202 (PMID:16687486)
GO_REF:0000107 		RGD
Ensembl		 PMID:16687486 GO_REF:0000107 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO
IEA 		MGI:109284|MGI:1930934 (PMID:10557208), (PMID:19779553), (PMID:9153393)
GO_REF:0000107 		RGD
Ensembl		 PMID:9153393 PMID:10557208 PMID:19779553 GO_REF:0000107 NCBI chr 6:103,323,052...103,375,088
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO MGI:1202717 (PMID:10557208), (PMID:19779553) RGD PMID:10557208 PMID:19779553 NCBI chr13:91,967,506...91,993,240
Ensembl chr13:91,967,983...91,993,174 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO MGI:1857411 (PMID:19779553) RGD PMID:19779553 NCBI chr14:57,338,493...57,523,330
Ensembl chr14:57,338,507...57,523,353 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in 		ISO MGI:3513254 (PMID:17531978)
(PMID:16326386) 		RGD PMID:16326386 PMID:17531978 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:87,974,776...87,978,969 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (PMID:14745966) RGD PMID:14745966 NCBI chr17:11,972,830...12,148,152
Ensembl chr17:11,972,830...12,148,152 		JBrowse link
G Sema3c semaphorin 3C involved_in ISO
IEA 		(PMID:19666519)
GO_REF:0000107 		RGD
Ensembl		 PMID:19666519 GO_REF:0000107 NCBI chr 4:17,583,212...17,747,234
Ensembl chr 4:17,583,212...17,746,534 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:10654605)
MGI:108078|MGI:1329040 (PMID:16467359), (PMID:18257070)
GO_REF:0000107 		RGD
Ensembl		 PMID:10654605 PMID:16467359 PMID:18257070 GO_REF:0000107 NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1329040|MGI:892014 (PMID:16467359), (PMID:18257070) 		Ensembl
RGD		 PMID:16467359 PMID:18257070 GO_REF:0000107 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO
IEA 		MGI:108051 (PMID:15183723)
GO_REF:0000107 		RGD
Ensembl		 PMID:15183723 GO_REF:0000107 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO
IEA 		MGI:3606185 (PMID:28893950)
GO_REF:0000107 		RGD
Ensembl		 PMID:28893950 GO_REF:0000107 NCBI chr 1:169,506,940...169,508,234
Ensembl chr 1:160,095,108...160,096,376 		JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within
involved_in 		ISO
IBA 		MGI:3044914 (PMID:15155583)
GO_REF:0000033 		RGD
GO_Central		 PMID:15155583 GO_REF:0000033 NCBI chr 8:88,652,054...88,680,081
Ensembl chr 8:88,652,054...88,680,058 		JBrowse link
G Tbxt T-box transcription factor T involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:1856158|MGI:1857760|MGI:3042264 (PMID:15384171), (PMID:16835439), (PMID:8293872) 		GO_Central
Ensembl
RGD		 PMID:8293872 PMID:15384171 PMID:16835439 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:52,298,104...52,309,813
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
G Tcap titin-cap involved_in ISO (PMID:9817758) RGD PMID:9817758 NCBI chr10:83,381,719...83,382,887
Ensembl chr10:83,381,719...83,382,887 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO
IEA 		MGI:1929775 (PMID:8955271)
GO_REF:0000107 		RGD
Ensembl		 PMID:8955271 GO_REF:0000107 NCBI chr 3:140,638,984...140,644,766
Ensembl chr 3:140,638,984...140,644,766 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:4456438 (PMID:20178780)
GO_REF:0000107 		RGD
Ensembl		 PMID:20178780 GO_REF:0000107 NCBI chr12:32,052,542...32,061,628
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO
IEA 		MGI:1343101 (PMID:17320900)
GO_REF:0000107 		RGD
Ensembl		 PMID:17320900 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Ttn titin involved_in ISO (PMID:9817758) RGD PMID:9817758 NCBI chr 3:61,652,432...61,924,912
Ensembl chr 3:61,652,439...61,924,741 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA 		MGI:1857088|MGI:1857489 (PMID:12636920), (PMID:16291790), (PMID:8299937)
GO_REF:0000107 		RGD
Ensembl		 PMID:8299937 PMID:12636920 PMID:16291790 GO_REF:0000107 NCBI chr10:44,034,174...44,078,366
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA 		MGI:1298218 (PMID:19795512)
GO_REF:0000107 		RGD
Ensembl		 PMID:19795512 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Xrcc2 X-ray repair cross complementing 2 acts_upstream_of_or_within ISO
IEA 		MGI:1927345 (PMID:17116431)
GO_REF:0000107 		RGD
Ensembl		 PMID:17116431 GO_REF:0000107 NCBI chr 4:9,423,873...9,502,980
Ensembl chr 4:9,423,898...9,442,482 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:2387501 (PMID:16157277), (PMID:16598713)
GO_REF:0000107 		RGD
Ensembl		 PMID:16157277 PMID:16598713 GO_REF:0000107 NCBI chr 3:29,214,581...29,344,890
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:16790474) 		UniProt
Ensembl
RGD		 PMID:16790474 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:16790474) 		UniProt
Ensembl
RGD		 PMID:16790474 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
spinal cord anterior/posterior patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO
IEA 		MGI:2449672 (PMID:16790475)
GO_REF:0000107 		RGD
Ensembl		 PMID:16790475 GO_REF:0000107 NCBI chr 7:1,311,732...1,325,211
Ensembl chr 7:1,311,732...1,320,725 		JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100360522 ribosomal protein P1-like involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:8,436,843...8,437,954
Ensembl chr17:8,431,465...8,435,348
Ensembl chr 8:8,431,465...8,435,348 		JBrowse link
G Neurog1 neurogenin 1 involved_in ISO
IEA 		UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
GO_REF:0000107 		RGD
Ensembl		 PMID:23419067 GO_REF:0000107 NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,362,821...8,364,571 		JBrowse link
G Rplp1 ribosomal protein lateral stalk subunit P1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:71,289,539...71,290,872
Ensembl chr 8:62,393,177...62,395,339 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,438,622...8,441,750
Ensembl chr17:8,431,635...8,436,592 		JBrowse link
G Wt1 WT1 transcription factor involved_in ISS
ISO 		GO_REF:0000024
(PMID:8395349) 		UniProt
RGD		 PMID:8395349 GO_REF:0000024 NCBI chr 3:112,019,721...112,068,454
Ensembl chr 3:91,567,001...91,613,643 		JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO
IEA 		MGI:108078|MGI:892014 (PMID:18257070)
GO_REF:0000107 		RGD
Ensembl		 PMID:18257070 GO_REF:0000107 NCBI chr 1:228,381,521...228,385,202
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2673982 (PMID:15469977) RGD PMID:15469977 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:108078|MGI:1329040 (PMID:18257070)
GO_REF:0000107 		RGD
Ensembl		 PMID:18257070 GO_REF:0000107 NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:1329040|MGI:892014 (PMID:18257070)
GO_REF:0000107 		RGD
Ensembl		 PMID:18257070 GO_REF:0000107 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
zona limitans intrathalamica formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule IDA RGD PMID:25281935 RGD:12832757 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:3578145 (PMID:16831833)
GO_REF:0000107 		RGD
Ensembl		 PMID:16831833 GO_REF:0000107 NCBI chr 3:85,824,333...85,898,748
Ensembl chr 3:65,417,453...65,492,217 		JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 acts_upstream_of_or_within ISO
IEA 		MGI:2181754|MGI:97359 (PMID:10809672)
GO_REF:0000107 		RGD
Ensembl		 PMID:10809672 GO_REF:0000107 NCBI chr 1:128,839,742...129,038,087
Ensembl chr 1:119,429,265...119,627,596 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    multicellular organismal process 9031
      pattern specification process 502
        regionalization 455
          anterior/posterior pattern specification 233
            anterior region determination 0
            anterior/posterior axis specification + 63
            anterior/posterior pattern specification involved in kidney development + 1
            anterior/posterior pattern specification, imaginal disc + 0
            compartment pattern specification + 4
            embryonic heart tube anterior/posterior pattern specification + 3
            forebrain anterior/posterior pattern specification 4
            foregut regionalization + 3
            neural plate anterior/posterior regionalization + 6
            periodic partitioning by pair rule gene 0
            posterior abdomen determination 0
            rostrocaudal neural tube patterning + 14
            somitogenesis + 77
            spinal cord anterior/posterior patterning + 1
            thorax and anterior abdomen determination 5
Path 2
Term Annotations click to browse term
  biological_process 20543
    developmental process 7160
      anatomical structure development 6656
        multicellular organism development 5362
          pattern specification process 502
            regionalization 455
              anterior/posterior pattern specification 233
                anterior region determination 0
                anterior/posterior axis specification + 63
                anterior/posterior pattern specification involved in kidney development + 1
                anterior/posterior pattern specification, imaginal disc + 0
                compartment pattern specification + 4
                embryonic heart tube anterior/posterior pattern specification + 3
                forebrain anterior/posterior pattern specification 4
                foregut regionalization + 3
                neural plate anterior/posterior regionalization + 6
                periodic partitioning by pair rule gene 0
                posterior abdomen determination 0
                rostrocaudal neural tube patterning + 14
                somitogenesis + 77
                spinal cord anterior/posterior patterning + 1
                thorax and anterior abdomen determination 5
paths to the root