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ONTOLOGY REPORT - ANNOTATIONS


Term:embryonic pattern specification
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Accession:GO:0009880 term browser browse the term
Definition:The process that results in the patterns of cell differentiation that will arise in an embryo.
Synonyms:broad_synonym: embryonic pattern biosynthesis;   embryonic pattern formation
 related_synonym: ventral/lateral system



show annotations for term's descendants           Sort by:
embryonic pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (PMID:10049573) RGD PMID:10049573 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
G Cdx2 caudal type homeo box 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:12,762,769...12,769,246
Ensembl chr12:7,726,798...7,733,142
JBrowse link
G Cdx4 caudal type homeo box 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:72,392,653...72,401,239
Ensembl chr  X:68,326,874...68,335,461
JBrowse link
G Disp1 dispatched RND transporter family member 1 acts_upstream_of_or_within ISO MGI:2672101 (PMID:12372301) RGD PMID:12372301 NCBI chr13:97,252,574...97,398,329
Ensembl chr13:94,720,928...94,866,702
JBrowse link
G Dop1b DOP1 leucine zipper like protein B involved_in ISO (PMID:10950924) RGD PMID:10950924 NCBI chr11:33,024,376...33,125,931
Ensembl chr11:33,024,411...33,125,931
JBrowse link
G Efnb1 ephrin B1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3039289 (PMID:15037550)
Ensembl
RGD
PMID:15037550 GO_REF:0000107 NCBI chr  X:68,297,529...68,310,335
Ensembl chr  X:64,257,351...64,270,157
JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:10655590)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:10655590 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:76,973,386...78,045,633
Ensembl chr 9:69,531,481...70,596,595
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO MGI:1927833|MGI:3629660 (PMID:16618415), (PMID:17522155) RGD PMID:16618415 PMID:17522155 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153811 (PMID:16618415) RGD PMID:16618415 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626
JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (PMID:18582859) RGD PMID:18582859 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2443342 (PMID:10529425)
UniProt
RGD
PMID:10529425 GO_REF:0000024 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:4415718 (PMID:19653321) RGD PMID:19653321 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497
JBrowse link
G Meis1 Meis homeobox 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:97,356,949...97,499,646
Ensembl chr14:93,155,419...93,294,265
JBrowse link
G Meis2 Meis homeobox 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:123,197,066...123,399,002
Ensembl chr 3:102,742,900...102,949,696
JBrowse link
G Meis3 Meis homeobox 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:85,986,602...86,000,873
Ensembl chr 1:76,861,924...76,872,691
JBrowse link
G Nanog Nanog homeobox involved_in ISO (PMID:15108323) RGD PMID:15108323 NCBI chr 4:157,615,687...157,623,061
Ensembl chr 4:155,943,737...155,951,116
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:2158732 (PMID:11311163) RGD PMID:11311163 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837
JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within ISO MGI:1857063 (PMID:15550757) RGD PMID:15550757 NCBI chr 4:119,518,663...119,522,902
Ensembl chr 4:117,961,163...117,965,402
JBrowse link
G Ooep oocyte expressed protein acts_upstream_of_or_within ISO (PMID:18191828) RGD PMID:18191828 NCBI chr 8:79,223,388...79,224,554
Ensembl chr 8:79,223,375...79,224,541
JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856621|MGI:99783 (PMID:10529425)
Ensembl
RGD
PMID:10529425 GO_REF:0000107 NCBI chr 9:63,470,023...63,538,772
Ensembl chr 9:55,975,667...56,044,464
JBrowse link
G Ripply1 ripply transcriptional repressor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:103,436,731...103,440,904
Ensembl chr  X:103,436,729...103,443,349
JBrowse link
G Ripply2 ripply transcriptional repressor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:87,974,776...87,978,969
JBrowse link
G Ripply3 ripply transcriptional repressor 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:33,648,471...33,656,587
Ensembl chr11:33,648,486...33,656,584
JBrowse link
G Satb2 SATB homeobox 2 acts_upstream_of_or_within ISO MGI:3692768 (PMID:16751105) RGD PMID:16751105 NCBI chr 9:65,842,351...66,028,569
Ensembl chr 9:58,350,246...58,530,707
JBrowse link
G Sim2 SIM bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:2180881 (PMID:12024028) RGD PMID:12024028 NCBI chr11:46,883,859...46,923,305
Ensembl chr11:33,414,218...33,453,663
JBrowse link
G Smad1 SMAD family member 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr19:45,417,430...45,477,962
Ensembl chr19:28,513,131...28,573,651
JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO MGI:1201674 (PMID:15183723) RGD PMID:15183723 NCBI chr18:72,124,792...72,193,345
Ensembl chr18:69,850,377...69,912,323
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO MGI:108051 (PMID:15183723) RGD PMID:15183723 NCBI chr 8:73,022,204...73,132,324
Ensembl chr 8:64,110,039...64,236,960
JBrowse link
G Smad5 SMAD family member 5 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr17:7,867,640...7,896,983
Ensembl chr17:7,864,720...7,891,634
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:3769332 (PMID:17984226) RGD PMID:17984226 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507
JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within ISO MGI:2182708 (PMID:10835630) RGD PMID:10835630 NCBI chr 8:57,885,886...58,073,507
Ensembl chr 8:48,994,566...49,177,011
JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:2180720 (PMID:16397896) RGD PMID:16397896 NCBI chr  X:141,159,623...141,165,587
Ensembl chr  X:136,124,026...136,134,746
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO MGI:1934206 (PMID:9790191) RGD PMID:9790191 NCBI chr 8:119,803,182...119,808,714
Ensembl chr 8:110,925,024...110,930,308
JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO MGI:3580390 (PMID:15870281) RGD PMID:15870281 NCBI chr 7:54,597,182...54,678,656
Ensembl chr 7:52,711,257...52,792,743
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in IEA
ISO
GO_REF:0000107
(PMID:9054360)
Ensembl
RGD
PMID:9054360 GO_REF:0000107 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457
JBrowse link
G Tasor transcription activation suppressor involved_in ISO (PMID:28839193) RGD PMID:28839193 NCBI chr16:2,606,807...2,669,902
Ensembl chr16:2,603,936...2,667,292
JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:9207801)
UniProt
RGD
PMID:9207801 GO_REF:0000024 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:36,881,445...36,893,708
JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO MGI:3044616 (PMID:14668413) RGD PMID:14668413 NCBI chr 4:106,238,892...106,404,012
Ensembl chr 4:104,680,739...104,845,287
JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO
GO_REF:0000107
(PMID:9054360)
Ensembl
RGD
PMID:9054360 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234
JBrowse link
embryonic axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in ISO (PMID:11118896) RGD PMID:11118896 NCBI chr11:93,676,400...93,685,584
Ensembl chr11:80,171,994...80,180,673
JBrowse link
G Chrdl1 chordin-like 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:11118896), (PMID:11401399)
Ensembl
RGD
PMID:11118896 PMID:11401399 GO_REF:0000107 NCBI chr  X:111,685,864...111,789,684
Ensembl chr  X:106,889,125...106,992,921
JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in IDA PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chr  X:71,390,328...71,395,023
Ensembl chr  X:67,350,373...67,355,162
JBrowse link
G Cobl cordon-bleu WH2 repeat protein involved_in ISO
IEA
(PMID:7586755)
GO_REF:0000107
RGD
Ensembl
PMID:7586755 GO_REF:0000107 NCBI chr14:91,041,721...91,274,272
Ensembl chr14:86,828,139...87,060,800
JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:9230313)
Ensembl
RGD
PMID:9230313 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Frat1 FRAT regulator of WNT signaling pathway 1 acts_upstream_of_or_within ISO (PMID:10534617) RGD PMID:10534617 NCBI chr 1:250,587,641...250,590,189
Ensembl chr 1:240,638,296...240,640,945
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:12121999) RGD PMID:12121999 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457
JBrowse link
G Stil STIL, centriolar assembly protein acts_upstream_of_or_within ISO MGI:2152962 (PMID:10385121) RGD PMID:10385121 NCBI chr 5:133,757,598...133,810,493
Ensembl chr 5:128,520,953...128,573,730
JBrowse link
G Wnt1 Wnt family member 1 involved_in ISO (PMID:2534596) RGD PMID:2534596 NCBI chr 7:131,817,558...131,821,605
Ensembl chr 7:129,938,604...129,942,651
JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:16826533) RGD PMID:16826533 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:123,863,108...123,908,981
JBrowse link
neural plate axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) RGD PMID:19004860 NCBI chr 1:164,127,304...164,225,088
Ensembl chr 1:154,715,310...154,812,520
JBrowse link
G Ptch1 patched 1 involved_in ISO (PMID:11517919) RGD PMID:11517919 NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333
JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family, member 6 involved_in ISO (PMID:21397848) RGD PMID:21397848 NCBI chr10:45,078,081...45,080,732
Ensembl chr10:44,577,675...44,581,077
JBrowse link
G Tdrd1 tudor domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:265,876,858...265,924,357
Ensembl chr 1:255,875,887...255,915,871
JBrowse link
G Tdrd5 tudor domain containing 5 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:21383078)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21383078 GO_REF:0000024 GO_REF:0000107 NCBI chr13:68,394,180...68,447,745
Ensembl chr13:68,394,061...68,441,319
JBrowse link
G Tdrd6 tudor domain containing 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:17,344,033...17,359,348
Ensembl chr 9:17,344,026...17,359,344
JBrowse link
G Tdrd7 tudor domain containing 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:65,034,317...65,108,165
Ensembl chr 5:60,238,678...60,312,544
JBrowse link
G Tdrkh tudor and KH domain containing involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:184,736,255...184,760,534
Ensembl chr 2:182,049,215...182,070,755
JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO MGI:3822451 (PMID:18794329) RGD PMID:18794329 NCBI chr13:33,221,705...33,321,400
Ensembl chr13:30,669,764...30,768,360
JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:1857725 (PMID:11291865) RGD PMID:11291865 NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:135,470,131...135,474,326
JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO MGI:3612535 (PMID:16368929) RGD PMID:16368929 NCBI chr 4:157,503,547...157,507,923
Ensembl chr 4:155,830,909...155,835,937
JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO MGI:5448825 (PMID:22949634) RGD PMID:22949634 NCBI chr  X:6,920,374...7,060,027
Ensembl chr  X:4,337,750...4,477,062
JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO MGI:1857502|MGI:1857848 (PMID:11291865) RGD PMID:11291865 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875
JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:3580268 (PMID:20346937)
GO_Central
RGD
PMID:20346937 GO_REF:0000033 NCBI chr 1:143,165,914...143,168,520
Ensembl chr 1:133,756,601...133,759,198
JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of_or_within ISO MGI:5438570 (PMID:21998026) RGD PMID:21998026 NCBI chr 3:7,992,582...7,995,136
Ensembl chr 3:7,992,552...7,995,133
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:1857502 (PMID:11291865) RGD PMID:11291865 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:21,943,191...21,953,416
JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO MGI:2685968 (PMID:20346937) RGD PMID:20346937 NCBI chr  X:103,436,731...103,440,904
Ensembl chr  X:103,436,729...103,443,349
JBrowse link
G Ripply2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within
ISO (PMID:16326386)
MGI:3614797 (PMID:20346937)
RGD PMID:16326386 PMID:20346937 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:87,974,776...87,978,969
JBrowse link
G Smad4 SMAD family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1858049 (PMID:9420335)
Ensembl
RGD
PMID:9420335 GO_REF:0000107 NCBI chr18:69,518,988...69,549,684
Ensembl chr18:67,243,742...67,274,438
JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within ISO (PMID:20346937) RGD PMID:20346937 NCBI chr 1:190,818,397...190,823,824
Ensembl chr 1:181,388,684...181,392,593
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4456438 (PMID:20178780)
Ensembl
RGD
PMID:20178780 GO_REF:0000107 NCBI chr12:37,713,522...37,722,606
Ensembl chr12:32,052,543...32,071,903
JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cobl cordon-bleu WH2 repeat protein involved_in IEA
ISO
GO_REF:0000107
(PMID:7586755)
Ensembl
RGD
PMID:7586755 GO_REF:0000107 NCBI chr14:91,041,721...91,274,272
Ensembl chr14:86,828,139...87,060,800
JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3038950 (PMID:14960495)
Ensembl
RGD
PMID:14960495 GO_REF:0000107 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179
JBrowse link
G Meox1 mesenchyme homeobox 1 acts_upstream_of_or_within ISO MGI:103219 (PMID:12925591) RGD PMID:12925591 NCBI chr10:87,318,668...87,338,169
Ensembl chr10:86,818,478...86,837,660
JBrowse link
G Meox2 mesenchyme homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:103220 (PMID:12925591)
Ensembl
RGD
PMID:12925591 GO_REF:0000107 NCBI chr 6:59,584,025...59,644,722
Ensembl chr 6:53,856,758...53,917,467
JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurog1 neurogenin 1 involved_in ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,362,821...8,364,571
JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,438,622...8,441,750
Ensembl chr17:8,431,635...8,436,592
JBrowse link
G Wt1 WT1 transcription factor involved_in ISO
ISS
(PMID:8395349)
GO_REF:0000024
RGD
UniProt
PMID:8395349 GO_REF:0000024 NCBI chr 3:112,019,721...112,068,454
Ensembl chr 3:91,567,001...91,613,643
JBrowse link
trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within ISO MGI:1934917 (PMID:16316641) RGD PMID:16316641 NCBI chr 3:187,647,904...187,695,974
Ensembl chr 3:167,270,296...167,318,451
JBrowse link
G Nrp2 neuropilin 2 acts_upstream_of_or_within ISO MGI:2137037 (PMID:16319111) RGD PMID:16319111 NCBI chr 9:71,616,602...71,731,869
Ensembl chr 9:64,123,132...64,237,958
JBrowse link
G Sema3f semaphorin 3F acts_upstream_of_or_within ISO MGI:2670663 (PMID:16319111) RGD PMID:16319111 NCBI chr 8:117,236,269...117,265,206
Ensembl chr 8:108,357,629...108,387,083
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
(PMID:15337776)
Ensembl
RGD
PMID:15337776 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (PMID:19386662) RGD PMID:19386662 NCBI chr19:73,256,557...73,411,705
Ensembl chr19:56,359,455...56,513,633
JBrowse link
G Nrp2 neuropilin 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:19386662)
Ensembl
RGD
PMID:19386662 GO_REF:0000107 NCBI chr 9:71,616,602...71,731,869
Ensembl chr 9:64,123,132...64,237,958
JBrowse link
G Sema3a semaphorin 3A involved_in ISO (PMID:19386662) RGD PMID:19386662 NCBI chr 4:22,239,418...22,709,907
Ensembl chr 4:21,287,982...21,494,432
JBrowse link
G Sema3f semaphorin 3F involved_in ISO (PMID:19386662) RGD PMID:19386662 NCBI chr 8:117,236,269...117,265,206
Ensembl chr 8:108,357,629...108,387,083
JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO MGI:3578145 (PMID:16831833) RGD PMID:16831833 NCBI chr 3:85,824,333...85,898,748
Ensembl chr 3:65,417,453...65,492,217
JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2181754|MGI:97359 (PMID:10809672)
Ensembl
RGD
PMID:10809672 GO_REF:0000107 NCBI chr 1:119,428,978...119,627,626
Ensembl chr 1:119,429,265...119,627,596
JBrowse link
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smad2 SMAD family member 2 involved_in ISO (PMID:9436979) RGD PMID:9436979 NCBI chr18:72,124,792...72,193,345
Ensembl chr18:69,850,377...69,912,323
JBrowse link
G Smad6 SMAD family member 6 involved_in ISO (PMID:9436979) RGD PMID:9436979 NCBI chr 8:73,345,457...73,414,985
Ensembl chr 8:64,450,114...64,519,763
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    multicellular organismal process 8969
      pattern specification process 492
        embryonic pattern specification 82
          blastoderm segmentation + 24
          embryonic axis specification + 45
          negative regulation of embryonic pattern specification 0
          positive regulation of embryonic pattern specification 0
          regulation of embryonic pattern specification + 0
          somite specification 4
          terminal region determination 0
Path 2
Term Annotations click to browse term
  biological_process 20536
    developmental process 7109
      anatomical structure development 6611
        multicellular organism development 5330
          pattern specification process 492
            embryonic pattern specification 82
              blastoderm segmentation + 24
              embryonic axis specification + 45
              negative regulation of embryonic pattern specification 0
              positive regulation of embryonic pattern specification 0
              regulation of embryonic pattern specification + 0
              somite specification 4
              terminal region determination 0
paths to the root