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ONTOLOGY REPORT - ANNOTATIONS


Term:axis specification
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Accession:GO:0009798 term browser browse the term
Definition:The establishment, maintenance and elaboration of a pattern along a line or around a point.
Synonyms:related_synonym: axis determination



show annotations for term's descendants           Sort by:
axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:2449944 (PMID:12645927) RGD PMID:12645927 NCBI chr18:26,138,382...26,196,021
Ensembl chr18:25,864,222...25,922,696
JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within ISO MGI:3513254 (PMID:17531978) RGD PMID:17531978 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:87,974,776...87,978,969
JBrowse link
G Wnt6 Wnt family member 6 acts_upstream_of_or_within ISO (PMID:11948913) RGD PMID:11948913 NCBI chr 9:76,329,882...76,343,523
Ensembl chr 9:76,329,882...76,343,523
JBrowse link
anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aurka aurora kinase A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3836420 (PMID:22939930)
Ensembl
RGD
PMID:22939930 GO_REF:0000107 NCBI chr 3:181,546,742...181,562,890
Ensembl chr 3:161,128,313...161,144,390
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:104903 (PMID:10964473)
Ensembl
RGD
PMID:10964473 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Cdx2 caudal type homeo box 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:12,762,769...12,769,246
Ensembl chr12:7,726,798...7,733,142
JBrowse link
G Cdx4 caudal type homeo box 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:72,392,653...72,401,239
Ensembl chr  X:68,326,874...68,335,461
JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO MGI:107405|MGI:98658 (PMID:15004567), (PMID:18241853) RGD PMID:15004567 PMID:18241853 NCBI chr 5:97,306,427...97,309,783
Ensembl chr 5:97,306,431...97,309,783
JBrowse link
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO MGI:1201414 (PMID:18241853) RGD PMID:18241853 NCBI chr 8:119,803,182...119,808,714
Ensembl chr 8:110,925,024...110,930,308
JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2148590 (PMID:10662781)
Ensembl
RGD
PMID:10662781 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Ddit3 DNA-damage inducible transcript 3 involved_in ISO (PMID:16434966) RGD PMID:16434966 NCBI chr 7:65,001,695...65,006,517
Ensembl chr 7:63,116,380...63,121,201
JBrowse link
G Gpc3 glypican 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:88180 (PMID:10964473)
Ensembl
RGD
PMID:10964473 GO_REF:0000107 NCBI chr  X:136,789,770...137,157,598
Ensembl chr  X:131,868,990...132,236,798
JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO MGI:1341884 (PMID:15680351) RGD PMID:15680351 NCBI chr 2:95,003,935...95,006,457
Ensembl chr 2:93,095,498...93,100,312
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 acts_upstream_of_or_within ISO MGI:1341800 (PMID:15680351) RGD PMID:15680351 NCBI chr 1:28,641,100...28,651,187
Ensembl chr 1:26,822,131...26,832,218
JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within ISO MGI:2449177 (PMID:12490556) RGD PMID:12490556 NCBI chr 1:254,813,161...254,838,931
Ensembl chr 1:244,877,173...244,890,013
JBrowse link
G Lefty1 left right determination factor 1 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:1201414 (PMID:15004567)
GO_REF:0000033
RGD
GO_Central
PMID:15004567 GO_REF:0000033 NCBI chr13:92,649,226...92,659,722
Ensembl chr13:92,656,323...92,659,720
JBrowse link
G Lefty2 Left-right determination factor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:92,610,185...92,620,918
Ensembl chr13:92,615,360...92,619,880
JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2443342 (PMID:10529425)
UniProt
RGD
PMID:10529425 GO_REF:0000024 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:2158732 (PMID:11311163) RGD PMID:11311163 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837
JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856621|MGI:99783 (PMID:10529425)
Ensembl
RGD
PMID:10529425 GO_REF:0000107 NCBI chr 9:63,470,023...63,538,772
Ensembl chr 9:55,975,667...56,044,464
JBrowse link
G Rnf2 ring finger protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2447529 (PMID:12183370)
Ensembl
RGD
PMID:12183370 GO_REF:0000107 NCBI chr13:66,103,943...66,136,038
Ensembl chr13:63,554,862...63,583,099
JBrowse link
G Six2 SIX homeobox 2 involved_in ISO (PMID:18321982) RGD PMID:18321982 NCBI chr 6:14,727,756...14,734,219
Ensembl chr 6:8,967,157...8,981,193
JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:11731796) RGD PMID:11731796 NCBI chr 5:170,995,851...171,064,957
Ensembl chr 5:165,714,093...165,782,733
JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO MGI:3044914 (PMID:15155583) RGD PMID:15155583 NCBI chr 8:97,531,960...97,559,988
Ensembl chr 8:88,652,054...88,680,058
JBrowse link
G Wls Wnt ligand secretion mediator involved_in ISS
ISO
GO_REF:0000024
(PMID:19841259)
UniProt
RGD
PMID:19841259 GO_REF:0000024 NCBI chr 2:251,590,653...251,705,991
Ensembl chr 2:248,931,903...249,048,298
JBrowse link
G Wnt3 Wnt family member 3 acts_upstream_of_or_within ISO MGI:2450902 (PMID:18028899) RGD PMID:18028899 NCBI chr10:89,180,224...89,224,195
Ensembl chr10:88,680,248...88,724,099
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO MGI:1934206 (PMID:9790191) RGD PMID:9790191 NCBI chr 8:119,803,182...119,808,714
Ensembl chr 8:110,925,024...110,930,308
JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO MGI:3580390 (PMID:15870281) RGD PMID:15870281 NCBI chr 7:54,597,182...54,678,656
Ensembl chr 7:52,711,257...52,792,743
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in IEA
ISO
GO_REF:0000107
(PMID:9054360)
Ensembl
RGD
PMID:9054360 GO_REF:0000107 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457
JBrowse link
G Tasor transcription activation suppressor involved_in ISO (PMID:28839193) RGD PMID:28839193 NCBI chr16:2,606,807...2,669,902
Ensembl chr16:2,603,936...2,667,292
JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:9207801)
UniProt
RGD
PMID:9207801 GO_REF:0000024 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:36,881,445...36,893,708
JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO MGI:3044616 (PMID:14668413) RGD PMID:14668413 NCBI chr 4:106,238,892...106,404,012
Ensembl chr 4:104,680,739...104,845,287
JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO
GO_REF:0000107
(PMID:9054360)
Ensembl
RGD
PMID:9054360 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234
JBrowse link
dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:10330403)
Ensembl
RGD
PMID:10330403 GO_REF:0000107 NCBI chr10:15,667,894...15,720,092
Ensembl chr10:15,163,684...15,215,615
JBrowse link
G Axin2 axin 2 IDA RGD PMID:9566905 RGD:68736 NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO MGI:2181295 (PMID:12923052) RGD PMID:12923052 NCBI chr16:9,740,751...9,786,861
Ensembl chr16:9,736,630...9,780,616
JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2148594|MGI:2158470 (PMID:12923052)
Ensembl
RGD
PMID:12923052 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191 (PMID:18985738) RGD PMID:18985738 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497
JBrowse link
G Mdfi MyoD family inhibitor involved_in ISO (PMID:11238923) RGD PMID:11238923 NCBI chr 9:13,156,806...13,175,218
Ensembl chr 9:13,156,866...13,175,217
JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856155|MGI:1934347 (PMID:10588713)
Ensembl
RGD
PMID:10588713 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Senp2 SUMO specific peptidase 2 IDA RGD PMID:10944533 RGD:1299408 NCBI chr11:92,487,259...92,522,795
Ensembl chr11:78,981,432...79,018,238
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:9192640)
Ensembl
RGD
PMID:9192640 GO_REF:0000107 NCBI chr16:75,278,325...75,316,736
Ensembl chr16:68,575,763...68,614,286
JBrowse link
G Vax2 ventral anterior homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2159246|MGI:2388160 (PMID:11830578), (PMID:11830579)
Ensembl
RGD
PMID:11830578 PMID:11830579 GO_REF:0000107 NCBI chr 4:117,753,180...117,777,242
Ensembl chr 4:116,195,528...116,219,594
JBrowse link
G Wnt3 Wnt family member 3 acts_upstream_of_or_within ISO MGI:2450902|MGI:2450903 (PMID:12569130) RGD PMID:12569130 NCBI chr10:89,180,224...89,224,195
Ensembl chr10:88,680,248...88,724,099
JBrowse link
embryonic axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in ISO (PMID:11118896) RGD PMID:11118896 NCBI chr11:93,676,400...93,685,584
Ensembl chr11:80,171,994...80,180,673
JBrowse link
G Chrdl1 chordin-like 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:11118896), (PMID:11401399)
Ensembl
RGD
PMID:11118896 PMID:11401399 GO_REF:0000107 NCBI chr  X:111,685,864...111,789,684
Ensembl chr  X:106,889,125...106,992,921
JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in IDA PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chr  X:71,390,328...71,395,023
Ensembl chr  X:67,350,373...67,355,162
JBrowse link
G Cobl cordon-bleu WH2 repeat protein involved_in ISO
IEA
(PMID:7586755)
GO_REF:0000107
RGD
Ensembl
PMID:7586755 GO_REF:0000107 NCBI chr14:91,041,721...91,274,272
Ensembl chr14:86,828,139...87,060,800
JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:9230313)
Ensembl
RGD
PMID:9230313 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Frat1 FRAT regulator of WNT signaling pathway 1 acts_upstream_of_or_within ISO (PMID:10534617) RGD PMID:10534617 NCBI chr 1:250,587,641...250,590,189
Ensembl chr 1:240,638,296...240,640,945
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:12121999) RGD PMID:12121999 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457
JBrowse link
G Stil STIL, centriolar assembly protein acts_upstream_of_or_within ISO MGI:2152962 (PMID:10385121) RGD PMID:10385121 NCBI chr 5:133,757,598...133,810,493
Ensembl chr 5:128,520,953...128,573,730
JBrowse link
G Wnt1 Wnt family member 1 involved_in ISO (PMID:2534596) RGD PMID:2534596 NCBI chr 7:131,817,558...131,821,605
Ensembl chr 7:129,938,604...129,942,651
JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:16826533) RGD PMID:16826533 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:123,863,108...123,908,981
JBrowse link
establishment of anatomical structure orientation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ttc8 tetratricopeptide repeat domain 8 involved_in ISO (PMID:14520415) RGD PMID:14520415 NCBI chr 6:118,198,186...118,252,422
Ensembl chr 6:118,198,201...118,252,418
JBrowse link
establishment of animal organ orientation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx4 iroquois homeobox 4 IEP RGD PMID:10882515 RGD:1582291 NCBI chr 1:31,859,101...31,868,089
Ensembl chr 1:30,030,561...30,039,549
JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within ISO (PMID:16256739) RGD PMID:16256739 NCBI chr18:26,411,833...26,417,426
Ensembl chr18:26,137,690...26,143,283
JBrowse link
growth plate cartilage axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stc1 stanniocalcin 1 involved_in ISO (PMID:16377640) RGD PMID:16377640 NCBI chr15:50,709,439...50,720,093
Ensembl chr15:44,299,621...44,310,264
JBrowse link
left/right axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Arl13b ARF like GTPase 13B acts_upstream_of_or_within ISO MGI:3578151 (PMID:22554696) RGD PMID:22554696 NCBI chr11:150,100...217,103
Ensembl chr11:150,955...217,197
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in ISO (PMID:15475956) RGD PMID:15475956 NCBI chr 1:14,132,303...14,134,746
Ensembl chr 1:12,312,160...12,314,897
JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO
IEA
(PMID:12730124)
GO_REF:0000107
RGD
Ensembl
PMID:12730124 GO_REF:0000107 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO MGI:3578147 (PMID:20678497) RGD PMID:20678497 NCBI chr13:33,221,705...33,321,400
Ensembl chr13:30,669,764...30,768,360
JBrowse link
G Ift172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2682066|MGI:3829198 (PMID:18930042), (PMID:22554696)
Ensembl
RGD
PMID:18930042 PMID:22554696 GO_REF:0000107 NCBI chr 6:30,801,841...30,841,239
Ensembl chr 6:25,081,980...25,120,860
JBrowse link
G Ift25 intraflagellar transport 25 acts_upstream_of_or_within ISO MGI:4432759|MGI:5426875 (PMID:22595669) RGD PMID:22595669 NCBI chr 5:122,035,588...122,062,421
Ensembl chr 5:122,035,581...122,062,421
JBrowse link
G Mns1 meiosis-specific nuclear structural 1 acts_upstream_of_or_within ISO MGI:5425368 (PMID:22396656) RGD PMID:22396656 NCBI chr 8:82,029,587...82,050,276
Ensembl chr 8:73,148,877...73,176,925
JBrowse link
G Notch1 notch receptor 1 involved_in ISO UniProtKB:O35516 (PMID:12730124) RGD PMID:12730124 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531
JBrowse link
G Notch2 notch receptor 2 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:Q01705 (PMID:12730124)
Ensembl
RGD
PMID:12730124 GO_REF:0000107 NCBI chr 2:188,299,336...188,432,823
Ensembl chr 2:185,610,589...185,744,088
JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (PMID:15475956) RGD PMID:15475956 NCBI chr 2:220,391,417...220,411,588
Ensembl chr 2:217,717,693...217,737,293
JBrowse link
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting involved_in ISO (PMID:21307093) RGD PMID:21307093 NCBI chr14:87,766,745...87,888,647
Ensembl chr14:83,545,469...83,638,498
JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2137553 (PMID:9636176)
Ensembl
RGD
PMID:9636176 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:58,343,529...58,373,829
JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:3698161 (PMID:17127413) RGD PMID:17127413 NCBI chr  X:141,159,623...141,165,587
Ensembl chr  X:136,124,026...136,134,746
JBrowse link
lung proximal/distal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (PMID:15531758) RGD PMID:15531758 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
neural plate axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) RGD PMID:19004860 NCBI chr 1:164,127,304...164,225,088
Ensembl chr 1:154,715,310...154,812,520
JBrowse link
G Ptch1 patched 1 involved_in ISO (PMID:11517919) RGD PMID:11517919 NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333
JBrowse link
oocyte axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wdr77 WD repeat domain 77 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:196,123,882...196,133,853
Ensembl chr 2:193,435,468...193,445,520
JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family, member 6 involved_in ISO (PMID:21397848) RGD PMID:21397848 NCBI chr10:45,078,081...45,080,732
Ensembl chr10:44,577,675...44,581,077
JBrowse link
G Tdrd1 tudor domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:265,876,858...265,924,357
Ensembl chr 1:255,875,887...255,915,871
JBrowse link
G Tdrd5 tudor domain containing 5 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:21383078)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21383078 GO_REF:0000024 GO_REF:0000107 NCBI chr13:68,394,180...68,447,745
Ensembl chr13:68,394,061...68,441,319
JBrowse link
G Tdrd6 tudor domain containing 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:17,344,033...17,359,348
Ensembl chr 9:17,344,026...17,359,344
JBrowse link
G Tdrd7 tudor domain containing 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:65,034,317...65,108,165
Ensembl chr 5:60,238,678...60,312,544
JBrowse link
G Tdrkh tudor and KH domain containing involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:184,736,255...184,760,534
Ensembl chr 2:182,049,215...182,070,755
JBrowse link
polarity specification of anterior/posterior axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:11044396)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:11044396 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within ISO (PMID:16256739) RGD PMID:16256739 NCBI chr18:26,411,833...26,417,426
Ensembl chr18:26,137,690...26,143,283
JBrowse link
polarity specification of proximal/distal axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:14511481) RGD PMID:14511481 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837
JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within ISO (PMID:16256739) RGD PMID:16256739 NCBI chr18:26,411,833...26,417,426
Ensembl chr18:26,137,690...26,143,283
JBrowse link
primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ets2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within ISO MGI:1891557 (PMID:23552073) RGD PMID:23552073 NCBI chr11:48,491,057...48,507,843
Ensembl chr11:35,021,596...35,038,319
JBrowse link
G Foxa2 forkhead box A2 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:11291865)
MGI:1857725 (PMID:11291865)
UniProt
RGD
PMID:11291865 GO_REF:0000024 NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:135,470,131...135,474,326
JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO MGI:3612535 (PMID:16368929) RGD PMID:16368929 NCBI chr 4:157,503,547...157,507,923
Ensembl chr 4:155,830,909...155,835,937
JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO MGI:4999724|MGI:97359 (PMID:21445260) RGD PMID:21445260 NCBI chr 1:244,602,945...244,608,532
Ensembl chr 1:235,190,455...235,196,042
JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1857502|MGI:1857848 (PMID:11291865)
UniProt
RGD
PMID:11291865 GO_REF:0000024 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98958 (PMID:19795512) RGD PMID:19795512 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:96086 (PMID:21445260) RGD PMID:21445260 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837
JBrowse link
G Otx2 orthodenticle homeobox 2 involved_in
acts_upstream_of_or_within
ISO (PMID:11291865)
MGI:1857502 (PMID:11291865)
RGD PMID:11291865 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:21,943,191...21,953,416
JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA
ISO
GO_REF:0000107
MGI:4356107 (PMID:19706528)
Ensembl
RGD
PMID:19706528 GO_REF:0000107 NCBI chr 7:126,518,587...126,614,581
Ensembl chr 7:124,639,142...124,658,113
JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:2158696 (PMID:9799237) RGD PMID:9799237 NCBI chr 9:21,924,050...21,933,338
Ensembl chr 9:14,426,472...14,435,733
JBrowse link
G Wnt5a Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1298218 (PMID:19795512)
Ensembl
RGD
PMID:19795512 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234
JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:2180720 (PMID:16397896) RGD PMID:16397896 NCBI chr  X:141,159,623...141,165,587
Ensembl chr  X:136,124,026...136,134,746
JBrowse link
proximal/distal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 involved_in ISO (PMID:12163408) RGD PMID:12163408 NCBI chr 6:14,791,937...14,796,365
Ensembl chr 6:9,036,434...9,053,301
JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO MGI:3822451 (PMID:18794329) RGD PMID:18794329 NCBI chr13:33,221,705...33,321,400
Ensembl chr13:30,669,764...30,768,360
JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:1857725 (PMID:11291865) RGD PMID:11291865 NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:135,470,131...135,474,326
JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO MGI:3612535 (PMID:16368929) RGD PMID:16368929 NCBI chr 4:157,503,547...157,507,923
Ensembl chr 4:155,830,909...155,835,937
JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO MGI:5448825 (PMID:22949634) RGD PMID:22949634 NCBI chr  X:6,920,374...7,060,027
Ensembl chr  X:4,337,750...4,477,062
JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO MGI:1857502|MGI:1857848 (PMID:11291865) RGD PMID:11291865 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875
JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:3580268 (PMID:20346937)
GO_Central
RGD
PMID:20346937 GO_REF:0000033 NCBI chr 1:143,165,914...143,168,520
Ensembl chr 1:133,756,601...133,759,198
JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of_or_within ISO MGI:5438570 (PMID:21998026) RGD PMID:21998026 NCBI chr 3:7,992,582...7,995,136
Ensembl chr 3:7,992,552...7,995,133
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:1857502 (PMID:11291865) RGD PMID:11291865 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:21,943,191...21,953,416
JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO MGI:2685968 (PMID:20346937) RGD PMID:20346937 NCBI chr  X:103,436,731...103,440,904
Ensembl chr  X:103,436,729...103,443,349
JBrowse link
G Ripply2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within
ISO (PMID:16326386)
MGI:3614797 (PMID:20346937)
RGD PMID:16326386 PMID:20346937 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:87,974,776...87,978,969
JBrowse link
G Smad4 SMAD family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1858049 (PMID:9420335)
Ensembl
RGD
PMID:9420335 GO_REF:0000107 NCBI chr18:69,518,988...69,549,684
Ensembl chr18:67,243,742...67,274,438
JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within ISO (PMID:20346937) RGD PMID:20346937 NCBI chr 1:190,818,397...190,823,824
Ensembl chr 1:181,388,684...181,392,593
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4456438 (PMID:20178780)
Ensembl
RGD
PMID:20178780 GO_REF:0000107 NCBI chr12:37,713,522...37,722,606
Ensembl chr12:32,052,543...32,071,903
JBrowse link
specification of axis polarity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041
JBrowse link
G Bcor BCL6 co-repressor involved_in ISO (PMID:17517692) RGD PMID:17517692 NCBI chr  X:13,282,431...13,402,254
Ensembl chr  X:10,687,732...10,729,613
JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurog1 neurogenin 1 involved_in ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,362,821...8,364,571
JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,438,622...8,441,750
Ensembl chr17:8,431,635...8,436,592
JBrowse link
G Wt1 WT1 transcription factor involved_in ISO
ISS
(PMID:8395349)
GO_REF:0000024
RGD
UniProt
PMID:8395349 GO_REF:0000024 NCBI chr 3:112,019,721...112,068,454
Ensembl chr 3:91,567,001...91,613,643
JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO MGI:3578145 (PMID:16831833) RGD PMID:16831833 NCBI chr 3:85,824,333...85,898,748
Ensembl chr 3:65,417,453...65,492,217
JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2181754|MGI:97359 (PMID:10809672)
Ensembl
RGD
PMID:10809672 GO_REF:0000107 NCBI chr 1:119,428,978...119,627,626
Ensembl chr 1:119,429,265...119,627,596
JBrowse link
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smad2 SMAD family member 2 involved_in ISO (PMID:9436979) RGD PMID:9436979 NCBI chr18:72,124,792...72,193,345
Ensembl chr18:69,850,377...69,912,323
JBrowse link
G Smad6 SMAD family member 6 involved_in ISO (PMID:9436979) RGD PMID:9436979 NCBI chr 8:73,345,457...73,414,985
Ensembl chr 8:64,450,114...64,519,763
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    multicellular organismal process 8969
      pattern specification process 492
        axis specification 103
          adaxial/abaxial axis specification + 0
          anterior/posterior axis specification + 61
          anterior/posterior axis specification, follicular epithelium 0
          centrolateral axis specification 0
          dorsal/ventral axis specification + 13
          embryonic axis specification + 45
          establishment of anatomical structure orientation + 3
          growth plate cartilage axis specification 1
          left/right axis specification 14
          oocyte axis specification + 7
          proximal/distal axis specification + 4
          radial axis specification 0
          specification of axis polarity + 5
Path 2
Term Annotations click to browse term
  biological_process 20536
    developmental process 7109
      anatomical structure development 6611
        multicellular organism development 5330
          pattern specification process 492
            axis specification 103
              adaxial/abaxial axis specification + 0
              anterior/posterior axis specification + 61
              anterior/posterior axis specification, follicular epithelium 0
              centrolateral axis specification 0
              dorsal/ventral axis specification + 13
              embryonic axis specification + 45
              establishment of anatomical structure orientation + 3
              growth plate cartilage axis specification 1
              left/right axis specification 14
              oocyte axis specification + 7
              proximal/distal axis specification + 4
              radial axis specification 0
              specification of axis polarity + 5
paths to the root