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ONTOLOGY REPORT - ANNOTATIONS

Term:photoperiodism
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Accession:GO:0009648 term browser browse the term
Definition:Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
Synonyms:exact_synonym: response to day length;   response to night length;   response to photoperiod
 xref: Wikipedia:Photoperiodism


show annotations for term's descendants           Sort by:
photoperiodism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aanat aralkylamine N-acetyltransferase IDA RGD PMID:12358739 RGD:628397 NCBI chr10:102,323,647...102,330,639
Ensembl chr10:101,827,301...101,831,801 		JBrowse link
G Drd4 dopamine receptor D4 IEP RGD PMID:18321474 RGD:2301031 NCBI chr 1:205,825,937...205,829,124
Ensembl chr 1:196,396,366...196,399,553 		JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit IEP RGD PMID:16962714 RGD:2293767 NCBI chr 6:30,017,952...30,039,269
Ensembl chr 6:24,300,956...24,320,034 		JBrowse link
G Nmu neuromedin U IEP RGD PMID:17726140 RGD:1642120 NCBI chr14:32,198,789...32,226,397
Ensembl chr14:31,844,728...31,872,192 		JBrowse link
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 IEP RGD PMID:21076970 RGD:10448986 NCBI chr10:84,224,599...84,231,812
Ensembl chr10:83,728,318...83,735,705 		JBrowse link
entrainment of circadian clock by photoperiod term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aanat aralkylamine N-acetyltransferase TAS RGD PMID:8770929 RGD:1298540 NCBI chr10:102,323,647...102,330,639
Ensembl chr10:101,827,301...101,831,801 		JBrowse link
G Atoh7 atonal bHLH transcription factor 7 involved_in ISO
IEA		 (PMID:26392540)
GO_REF:0000107		 RGD
Ensembl		 PMID:26392540 GO_REF:0000107 NCBI chr20:25,529,528...25,529,977
Ensembl chr20:25,530,826...25,531,275 		JBrowse link
G Bhlhe40 basic helix-loop-helix family, member e40 involved_in ISO (PMID:18411297) RGD PMID:18411297 NCBI chr 4:143,174,450...143,180,150
Ensembl chr 4:141,618,476...141,624,774 		JBrowse link
G Crtc1 CREB regulated transcription coactivator 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:23993098)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:23993098 GO_REF:0000024 GO_REF:0000107 NCBI chr16:19,022,171...19,080,880
Ensembl chr16:18,988,250...19,043,381 		JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in ISS
ISO
IBA		 GO_REF:0000024
(PMID:23616524)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:23616524 GO_REF:0000024 GO_REF:0000033 NCBI chr 7:20,417,526...20,481,791
Ensembl chr 7:18,529,823...18,594,091 		JBrowse link
G Cry2 cryptochrome circadian regulator 2 involved_in ISS
IEA
ISO
IBA		 GO_REF:0000024
GO_REF:0000107
(PMID:23616524)
GO_REF:0000033		 UniProt
Ensembl
RGD
GO_Central		 PMID:23616524 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:98,830,479...98,860,437
Ensembl chr 3:78,374,995...78,404,965 		JBrowse link
G Fbxl21 F-box and leucine-rich repeat protein 21 involved_in IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:23452855), (PMID:23452856)		 GO_Central
Ensembl
RGD		 PMID:23452855 PMID:23452856 GO_REF:0000033 GO_REF:0000107 NCBI chr17:8,063,731...8,082,920
Ensembl chr17:8,060,414...8,073,359 		JBrowse link
G Fbxl3 F-box and leucine-rich repeat protein 3 involved_in IBA
ISO		 GO_REF:0000033
(PMID:23452855), (PMID:23452856), (PMID:23616524)		 GO_Central
RGD		 PMID:23452855 PMID:23452856 PMID:23616524 GO_REF:0000033 NCBI chr15:86,321,504...86,341,387
Ensembl chr15:79,906,795...79,927,867 		JBrowse link
G Id2 inhibitor of DNA binding 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:19217292)		 UniProt
RGD		 PMID:19217292 GO_REF:0000024 NCBI chr 6:47,469,162...47,470,995
Ensembl chr 6:41,728,946...41,744,400 		JBrowse link
G Mta1 metastasis associated 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:24089055)		 UniProt
RGD		 PMID:24089055 GO_REF:0000024 NCBI chr 6:137,999,845...138,038,696
Ensembl chr 6:132,178,853...132,217,641 		JBrowse link
G Nr2f6 nuclear receptor subfamily 2, group F, member 6 acts_upstream_of_or_within ISO
IEA		 MGI:3574037 (PMID:15741322)
GO_REF:0000107		 RGD
Ensembl		 PMID:15741322 GO_REF:0000107 NCBI chr16:18,080,003...18,087,449
Ensembl chr16:18,046,013...18,053,459 		JBrowse link
G Opn5 opsin 5 involved_in ISO (PMID:26392540), (PMID:30240620), (PMID:31607531) RGD PMID:26392540 PMID:30240620 PMID:31607531 NCBI chr 9:25,865,610...25,913,315
Ensembl chr 9:18,368,416...18,415,476 		JBrowse link
G Pde6b phosphodiesterase 6B involved_in ISO
IEA		 (PMID:30240620)
GO_REF:0000107		 RGD
Ensembl		 PMID:30240620 GO_REF:0000107 NCBI chr14:1,468,302...1,511,435
Ensembl chr14:1,323,310...1,366,450 		JBrowse link
G Per1 period circadian regulator 1 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:15888647)		 UniProt
GO_Central
RGD		 PMID:15888647 GO_REF:0000024 GO_REF:0000033 NCBI chr10:54,299,002...54,313,804
Ensembl chr10:53,805,535...53,814,431 		JBrowse link
G Per2 period circadian regulator 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:99,454,828...99,497,069
Ensembl chr 9:92,007,296...92,049,459 		JBrowse link
G Per3 period circadian regulator 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:166,740,914...166,778,243
Ensembl chr 5:161,459,533...161,495,607 		JBrowse link
G Pml PML nuclear body scaffold involved_in ISO
IEA		 (PMID:22274616)
GO_REF:0000107		 RGD
Ensembl		 PMID:22274616 GO_REF:0000107 NCBI chr 8:67,523,164...67,557,801
Ensembl chr 8:58,628,837...58,658,971 		JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21712997)		 UniProt
Ensembl
RGD		 PMID:21712997 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:210,914,576...210,918,193
Ensembl chr 1:201,485,085...201,497,327 		JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta involved_in ISS
ISO		 GO_REF:0000024
(PMID:21712997)		 UniProt
RGD		 PMID:21712997 GO_REF:0000024 NCBI chr 6:29,681,099...29,712,835
Ensembl chr 6:23,960,998...23,992,824 		JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21712997)		 UniProt
Ensembl
RGD		 PMID:21712997 GO_REF:0000024 GO_REF:0000107 NCBI chr12:40,043,822...40,061,301
Ensembl chr12:34,383,072...34,400,553 		JBrowse link
G Rbm14 RNA binding motif protein 14 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:211,476,298...211,535,077
Ensembl chr 1:202,078,287...202,105,665
Ensembl chr 1:202,078,287...202,105,665 		JBrowse link
G Rbm4 RNA binding motif protein 4 involved_in ISO (PMID:17264215) RGD PMID:17264215 NCBI chr 1:211,507,845...211,516,907
Ensembl chr 1:202,085,279...202,105,380 		JBrowse link
G Rbm4b RNA binding motif protein 4B involved_in ISS
ISO		 GO_REF:0000024
(PMID:17264215)		 UniProt
RGD		 PMID:17264215 GO_REF:0000024 NCBI chr 1:211,477,337...211,487,428
Ensembl chr 1:202,047,927...202,058,020 		JBrowse link
G Sik1 salt-inducible kinase 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:23993098)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:23993098 GO_REF:0000024 GO_REF:0000107 NCBI chr20:9,947,104...9,958,729
Ensembl chr20:9,947,396...9,958,991 		JBrowse link
G Tp53 tumor protein p53 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:24051492)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:24051492 GO_REF:0000024 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Usp2 ubiquitin specific peptidase 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:23213472)		 UniProt
Ensembl
RGD		 PMID:23213472 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:53,308,264...53,336,800
Ensembl chr 8:44,411,607...44,438,331 		JBrowse link
long-day photoperiodism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agrp agouti related neuropeptide IEP RGD PMID:19490367 RGD:6480663 NCBI chr19:33,447,992...33,481,602
Ensembl chr19:33,447,992...33,449,584 		JBrowse link
short-day photoperiodism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npy neuropeptide Y IEP RGD PMID:19490367 RGD:6480663 NCBI chr 4:80,212,111...80,219,310
Ensembl chr 4:78,881,264...78,888,495 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20567
    response to stimulus 11081
      response to abiotic stimulus 1619
        response to radiation 540
          response to light stimulus 381
            photoperiodism 32
              entrainment of circadian clock by photoperiod 26
              long-day photoperiodism + 1
              photoperiodism, flowering + 0
              response to photoperiod, blue light 0
              response to photoperiod, red light 0
              short-day photoperiodism + 1
paths to the root