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ONTOLOGY REPORT - ANNOTATIONS


Term:detection of biotic stimulus
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Accession:GO:0009595 term browser browse the term
Definition:The series of events in which a biotic stimulus, one caused or produced by a living organism, is received and converted into a molecular signal.
Synonyms:related_synonym: perception of biotic stimulus
 alt_id: GO:0009596



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detection of biotic stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlrp3 NLR family, pyrin domain containing 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:18403674)
(PMID:18604214)
UniProt
RGD
PMID:18403674 PMID:18604214 GO_REF:0000024 NCBI chr10:44,826,299...44,853,373 JBrowse link
contact inhibition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor IMP RGD PMID:17952121 RGD:405878083 NCBI chr 6:57,961,423...57,998,901 JBrowse link
G Smo smoothened, frizzled class receptor involved_in ISO
IEA
(PMID:9422511)
GO_REF:0000107
RGD
Ensembl
PMID:9422511 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280 JBrowse link
G Tspo translocator protein IDA RGD PMID:18190798 RGD:2317142 NCBI chr 7:116,600,214...116,610,461 JBrowse link
detection of bacterial lipoprotein term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssc5d scavenger receptor cysteine rich family member with 5 domains involved_in IBA
ISO
GO_REF:0000033
(PMID:21217009)
GO_Central
RGD
PMID:21217009 GO_REF:0000033 NCBI chr 1:68,891,942...68,910,462 JBrowse link
detection of bacterium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec4m C-type lectin domain family 4 member M acts_upstream_of_or_within ISO (PMID:14707091) RGD PMID:14707091 NCBI chr12:6,713,795...6,722,414 JBrowse link
G Naip5 NLR family, apoptosis inhibitory protein 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:31,557,706...31,608,722 JBrowse link
G Naip6 NLR family, apoptosis inhibitory protein 6 involved_in IBA
ISO
GO_REF:0000033
(PMID:21874021)
GO_Central
RGD
PMID:21874021 GO_REF:0000033 NCBI chr 2:33,241,520...33,293,184 JBrowse link
G Nlrc4 NLR family, CARD domain containing 4 involved_in ISO
IBA
ISS
(PMID:15107016)
(PMID:22885697)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:15107016 PMID:22885697 GO_REF:0000024 GO_REF:0000033 NCBI chr 6:26,743,658...26,771,783 JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 involved_in ISO (PMID:15653568) RGD PMID:15653568 NCBI chr 4:85,391,142...85,442,281 JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 involved_in ISO (PMID:15653568) RGD PMID:15653568 NCBI chr19:34,555,832...34,596,281 JBrowse link
G Parg poly (ADP-ribose) glycohydrolase acts_upstream_of_or_within ISO MGI:3052740 (PMID:15282315) RGD PMID:15282315 NCBI chr16:7,442,696...7,550,585 JBrowse link
G Pglyrp1 peptidoglycan recognition protein 1 involved_in ISO (PMID:11461926) RGD PMID:11461926 NCBI chr 1:78,531,815...78,537,001 JBrowse link
G Pglyrp2 peptidoglycan recognition protein 2 involved_in ISO (PMID:11461926) RGD PMID:11461926 NCBI chr 7:12,069,414...12,082,437 JBrowse link
G Pglyrp3 peptidoglycan recognition protein 3 involved_in ISO (PMID:11461926) RGD PMID:11461926 NCBI chr 2:180,174,931...180,186,007 JBrowse link
G Pglyrp4 peptidoglycan recognition protein 4 involved_in ISO (PMID:11461926) RGD PMID:11461926 NCBI chr 2:176,202,654...176,322,859 JBrowse link
detection of cell density term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in IEA
ISO
GO_REF:0000107
MGI:1857283 (PMID:17189429)
Ensembl
RGD
PMID:17189429 GO_REF:0000107 NCBI chr 3:79,125,814...79,202,896 JBrowse link
detection of diacyl bacterial lipopeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr2 toll-like receptor 2 acts_upstream_of_or_within ISO (PMID:19931471) RGD PMID:19931471 NCBI chr 2:171,499,189...171,504,831 JBrowse link
G Tlr6 toll-like receptor 6 acts_upstream_of_or_within ISO (PMID:19931471) RGD PMID:19931471 NCBI chr14:43,715,809...43,727,019 JBrowse link
detection of lipopolysaccharide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp4 caspase 4 involved_in ISO (PMID:23887873), (PMID:24031018), (PMID:30589883), (PMID:38632402) RGD PMID:23887873 PMID:24031018 PMID:30589883 PMID:38632402 NCBI chr 8:10,883,817...10,919,978 JBrowse link
G Ly96 lymphocyte antigen 96 involved_in ISO
IBA
(PMID:19252480)
GO_REF:0000033
RGD
GO_Central
PMID:19252480 GO_REF:0000033 NCBI chr 5:7,365,536...7,397,864 JBrowse link
G Nr4a1 nuclear receptor subfamily 4, group A, member 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:37001519)
UniProt
RGD
PMID:37001519 GO_REF:0000024 NCBI chr 7:134,247,153...134,268,044 JBrowse link
G Scarb1 scavenger receptor class B, member 1 involved_in ISO
IEA
(PMID:12651854)
GO_REF:0000107
RGD
Ensembl
PMID:12651854 GO_REF:0000107 NCBI chr12:36,957,302...37,023,982 JBrowse link
G Tlr4 toll-like receptor 4 involved_in ISO
IBA
ISS
IEA
(PMID:19252480)
(PMID:28098138)
GO_REF:0000033
GO_REF:0000024
GO_REF:0000107
RGD
GO_Central
UniProt
Ensembl
PMID:19252480 PMID:28098138 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:85,161,247...85,174,882 JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (PMID:12847223) RGD PMID:12847223 NCBI chr 9:12,647,605...12,654,190 JBrowse link
detection of lipoteichoic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (PMID:12847223) RGD PMID:12847223 NCBI chr 9:12,647,605...12,654,190 JBrowse link
detection of molecule of bacterial origin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lbp lipopolysaccharide binding protein involved_in ISO
IEA
(PMID:11528597)
GO_REF:0000107
RGD
Ensembl
PMID:11528597 GO_REF:0000107 NCBI chr 3:167,373,786...167,400,941 JBrowse link
G Tlr9 toll-like receptor 9 involved_in ISO (PMID:17128265) RGD PMID:17128265 NCBI chr 8:106,864,680...106,868,796 JBrowse link
detection of molecule of fungal origin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec7a C-type lectin domain containing 7A involved_in ISO (PMID:15213161) RGD PMID:15213161 NCBI chr 4:164,588,737...164,599,953 JBrowse link
detection of muramyl dipeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nod2 nucleotide-binding oligomerization domain containing 2 involved_in
acts_upstream_of_or_within
ISO (PMID:15998797)
(PMID:12527755)
RGD PMID:12527755 PMID:15998797 NCBI chr19:34,555,832...34,596,281 JBrowse link
detection of peptidoglycan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (PMID:12847223) RGD PMID:12847223 NCBI chr 9:12,647,605...12,654,190 JBrowse link
detection of triacyl bacterial lipopeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr1 toll-like receptor 1 acts_upstream_of_or_within ISO (PMID:19931471) RGD PMID:19931471 NCBI chr14:43,737,761...43,750,389 JBrowse link
G Tlr2 toll-like receptor 2 acts_upstream_of_or_within ISO (PMID:19931471) RGD PMID:19931471 NCBI chr 2:171,499,189...171,504,831 JBrowse link
detection of tumor cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crtam cytotoxic and regulatory T cell molecule involved_in ISO
IBA
(PMID:15811952)
GO_REF:0000033
RGD
GO_Central
PMID:15811952 GO_REF:0000033 NCBI chr 8:41,340,117...41,377,381 JBrowse link
detection of yeast term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec4a C-type lectin domain family 4, member A involved_in ISO (PMID:22041900) RGD PMID:22041900 NCBI chr 4:158,026,138...158,119,904 JBrowse link
G Clec4m C-type lectin domain family 4 member M acts_upstream_of_or_within ISO (PMID:14707091) RGD PMID:14707091 NCBI chr12:6,713,795...6,722,414 JBrowse link
G Clec6a-ps1 C-type lectin domain family 6, member A, pseudogene 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 4:156,539,408...156,559,032 JBrowse link
G Clec7a C-type lectin domain containing 7A acts_upstream_of_or_within
involved_in
ISO (PMID:14698225)
(PMID:19136564)
RGD PMID:14698225 PMID:19136564 NCBI chr 4:164,588,737...164,599,953 JBrowse link
negative regulation of cell growth involved in contact inhibition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdhr2 cadherin-related family member 2 involved_in ISO (PMID:12117771) RGD PMID:12117771 NCBI chr17:9,876,853...9,913,356 JBrowse link
negative regulation of cell proliferation involved in contact inhibition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dach1 dachshund family transcription factor 1 acts_upstream_of_or_within ISO MGI:96646 (PMID:17182846) RGD PMID:17182846 NCBI chr15:74,528,122...74,909,811 JBrowse link
G Fap fibroblast activation protein, alpha involved_in ISO (PMID:15133496) RGD PMID:15133496 NCBI chr 3:47,138,823...47,207,671 JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:12912914)
UniProt
RGD
PMID:12912914 GO_REF:0000024 NCBI chr 1:152,111,172...152,226,390 JBrowse link
G Srpx sushi-repeat-containing protein, X-linked acts_upstream_of_or_within ISO (PMID:12049817) RGD PMID:12049817 NCBI chr  X:12,676,984...12,751,296 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20534
    response to stimulus 11012
      detection of stimulus 1617
        detection of biotic stimulus 37
          detection of cell density + 9
          detection of endoplasmic reticulum overloading 0
          detection of external biotic stimulus + 26
          detection of tumor cell 1
paths to the root