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ONTOLOGY REPORT - ANNOTATIONS

Term:gamma-aminobutyric acid metabolic process
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Accession:GO:0009448 term browser browse the term
Definition:The chemical reactions and pathways involving gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms.
Comment:See also the biological process term 'neurotransmitter metabolic process ; GO:0042133'.
Synonyms:exact_synonym: 4-aminobutanoate metabolic process;   4-aminobutanoate metabolism;   4-aminobutyrate metabolic process;   4-aminobutyrate metabolism;   GABA metabolic process;   GABA metabolism;   gamma-aminobutyric acid metabolism


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gamma-aminobutyric acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase involved_in ISO
IEA 		(PMID:15528998)
GO_REF:0000107
GO_REF:0000002 		RGD
Ensembl
InterPro		 PMID:15528998 GO_REF:0000002 GO_REF:0000107 NCBI chr10:7,503,351...7,599,474
Ensembl chr10:6,999,819...7,092,835 		JBrowse link
G Aldh5a1 aldehyde dehydrogenase 5 family, member A1 acts_upstream_of_or_within ISO MGI:2180159 (PMID:12067239), (PMID:16504488), (PMID:16647690) RGD PMID:12067239 PMID:16504488 PMID:16647690 NCBI chr17:40,560,373...40,586,711
Ensembl chr17:40,130,883...40,158,677 		JBrowse link
G Phgdh phosphoglycerate dehydrogenase acts_upstream_of_or_within ISO
IEA 		MGI:3769591 (PMID:19114063)
GO_REF:0000107 		RGD
Ensembl		 PMID:19114063 GO_REF:0000107 NCBI chr 2:188,595,700...188,624,789
Ensembl chr 2:185,906,966...185,935,944 		JBrowse link
gamma-aminobutyric acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase IMP RGD PMID:19540876 RGD:9588538 NCBI chr10:7,503,351...7,599,474
Ensembl chr10:6,999,819...7,092,835 		JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:26430123) 		UniProt
Ensembl
RGD		 PMID:26430123 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:227,426,939...227,579,497
Ensembl chr 1:218,042,127...218,152,961 		JBrowse link
G Gad1 glutamate decarboxylase 1 involved_in IDA
IEA
ISO
IBA 		PMID:1924335
GO_REF:0000107
(PMID:17384644)
GO_REF:0000033
(PMID:9177246) 		Ensembl
RGD
GO_Central		 PMID:9177246 PMID:17384644 PMID:17712632 PMID:1924335 GO_REF:0000033 GO_REF:0000107, RGD:6480258, RGD:728511 NCBI chr 3:75,777,260...75,818,099
Ensembl chr 3:55,369,704...55,410,333 		JBrowse link
G Gad2 glutamate decarboxylase 2 involved_in IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:22108820 GO_REF:0000033, RGD:401900601 NCBI chr17:89,671,718...89,734,246
Ensembl chr17:84,763,628...84,826,155 		JBrowse link
G Slc1a3 solute carrier family 1 member 3 acts_upstream_of_or_within ISO
IEA 		MGI:1931872 (PMID:15305132)
GO_REF:0000107 		RGD
Ensembl		 PMID:15305132 GO_REF:0000107 NCBI chr 2:59,482,707...59,557,808
Ensembl chr 2:57,755,497...57,830,605 		JBrowse link
G Slc38a1 solute carrier family 38, member 1 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:32668809)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:32668809 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:129,612,414...129,681,727
Ensembl chr 7:127,738,226...127,802,218 		JBrowse link
gamma-aminobutyric acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase involved_in ISO
IBA
IC 		(PMID:11561735)
GO_REF:0000033
GO_REF:0000111 		RGD
GO_Central
UniProt		 PMID:11561735 GO_REF:0000033 GO_REF:0000111 NCBI chr10:7,503,351...7,599,474
Ensembl chr10:6,999,819...7,092,835 		JBrowse link
G Aldh5a1 aldehyde dehydrogenase 5 family, member A1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO
TAS
IBA 		GO_REF:0000024
GO_REF:0000041
(PMID:15037717), (PMID:9683595)
PMID:7814412
GO_REF:0000033
MGI:2180159 (PMID:11544478), (PMID:15262267)
GO_REF:0000002
GO_REF:0000104 		UniProt
RGD
GO_Central
InterPro		 PMID:9683595 PMID:11544478 PMID:15037717 PMID:15262267 PMID:7814412 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104, RGD:632258 NCBI chr17:40,560,373...40,586,711
Ensembl chr17:40,130,883...40,158,677 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        primary metabolic process 10727
          amino acid metabolic process 305
            non-proteinogenic amino acid metabolic process 74
              gamma-aminobutyric acid metabolic process 8
                gamma-aminobutyric acid biosynthetic process 6
                gamma-aminobutyric acid catabolic process + 2
Path 2
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        small molecule metabolic process 1944
          organic acid metabolic process 1062
            oxoacid metabolic process 1040
              carboxylic acid metabolic process 1025
                monocarboxylic acid metabolic process 737
                  gamma-aminobutyric acid metabolic process 8
                    gamma-aminobutyric acid biosynthetic process 6
                    gamma-aminobutyric acid catabolic process + 2
paths to the root