ONTOLOGY REPORT - ANNOTATIONS
Term: nucleobase metabolic process
Accession: GO:0009112
browse the term
Definition: The chemical reactions and pathways involving a nucleobase, a nitrogenous base that is a constituent of a nucleic acid, e.g. the purines: adenine, guanine, hypoxanthine, xanthine and the pyrimidines: cytosine, uracil, thymine.
Synonyms: exact_synonym: nucleobase metabolism
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Cad
carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
involved_in
IDA IBA ISO
GO_REF:0000033 (PMID:24332717)
GO_Central RGD
PMID:24332717 PMID:1476792
GO_REF:0000033, RGD:5132591
NCBI chr 6:31,012,091...31,035,098
Ensembl chr 6:25,292,133...25,319,861
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Cmpk1
cytidine/uridine monophosphate kinase 1
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830
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Cps1
carbamoyl-phosphate synthase 1
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 9:76,063,863...76,186,739
Ensembl chr 9:68,614,153...68,737,033
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Dhodh
dihydroorotate dehydrogenase
involved_in
IDA IBA IEA
GO_REF:0000033 GO_REF:0000002
GO_Central InterPro RGD
PMID:1476792
GO_REF:0000002 GO_REF:0000033, RGD:5132591
NCBI chr19:54,460,636...54,483,049
Ensembl chr19:37,558,177...37,591,654
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Mtor
mechanistic target of rapamycin kinase
involved_in
IEA ISO
GO_REF:0000107 (PMID:23429704)
Ensembl RGD
PMID:23429704
GO_REF:0000107
NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:158,884,804...158,994,311
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Umps
uridine monophosphate synthetase
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr11:80,311,269...80,321,678
Ensembl chr11:66,806,045...66,821,903
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Gart
phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr11:44,351,841...44,377,086
Ensembl chr11:30,865,889...30,891,125
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Ak1
adenylate kinase 1
NAS
RGD
PMID:8468325
RGD:5490217
NCBI chr 3:36,310,113...36,320,760
Ensembl chr 3:15,912,485...15,923,041
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Ak2
adenylate kinase 2
TAS
RGD
PMID:8468325
RGD:5490217
NCBI chr 5:146,609,469...146,649,008
Ensembl chr 5:141,346,063...141,364,632
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Aprt
adenine phosphoribosyl transferase
acts_upstream_of_or_within
ISO
MGI:1857278|MGI:96217 (PMID:8643571), (PMID:8894695)
RGD
PMID:8643571 PMID:8894695
NCBI chr19:67,534,737...67,537,027
Ensembl chr19:50,626,202...50,628,431
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Hprt1
hypoxanthine phosphoribosyltransferase 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:88061 (PMID:8894695)
Ensembl RGD
PMID:8894695
GO_REF:0000107
NCBI chr X:137,655,744...137,687,718
Ensembl chr X:132,736,096...132,768,154
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Aprt
adenine phosphoribosyl transferase
involved_in
IEA IBA
GO_REF:0000002 GO_REF:0000033
InterPro GO_Central
GO_REF:0000002 GO_REF:0000033
NCBI chr19:67,534,737...67,537,027
Ensembl chr19:50,626,202...50,628,431
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Mapk1
mitogen activated protein kinase 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:15284227)
Ensembl RGD
PMID:15284227
GO_REF:0000107
NCBI chr11:97,462,025...97,529,193
Ensembl chr11:83,957,813...84,023,616
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Tet2
tet methylcytosine dioxygenase 2
acts_upstream_of_or_within
ISO
MGI:5301343 (PMID:21803851)
RGD
PMID:21803851
NCBI chr 2:224,662,654...224,746,819
Ensembl chr 2:221,988,645...222,072,534
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Nt5c2
5'-nucleotidase, cytosolic II
involved_in
ISO
(PMID:5560407)
RGD
PMID:5560407
NCBI chr 1:255,712,797...255,838,285
Ensembl chr 1:245,772,277...245,897,913
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Gda
guanine deaminase
involved_in
IEA ISO
GO_REF:0000041 (PMID:8064675)
UniProt RGD
PMID:8064675
GO_REF:0000041
NCBI chr 1:228,333,401...228,408,901
Ensembl chr 1:218,906,815...218,982,416
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Uox
urate oxidase
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
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Urad
ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase
involved_in
ISO
(PMID:16462750)
RGD
PMID:16462750
NCBI chr12:7,709,278...7,718,925
Ensembl chr12:7,709,312...7,718,923
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Xdh
xanthine dehydrogenase
involved_in
IEA ISO IDA
GO_REF:0000107 (PMID:1590774) PMID:3443108
Ensembl RGD
PMID:1590774 PMID:3443108
GO_REF:0000107, RGD:42721989
NCBI chr 6:27,282,319...27,344,022
Ensembl chr 6:21,530,113...21,592,268
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Gda
guanine deaminase
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:228,333,401...228,408,901
Ensembl chr 1:218,906,815...218,982,416
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Kdm1a
lysine demethylase 1A
IMP
RGD
PMID:20418916
RGD:9588315
NCBI chr 5:154,066,436...154,121,913
Ensembl chr 5:148,782,976...148,838,319
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Hprt1
hypoxanthine phosphoribosyltransferase 1
involved_in
ISO IBA IEA ISS
(PMID:19527031) GO_REF:0000033 GO_REF:0000107 GO_REF:0000024
RGD GO_Central Ensembl UniProt
PMID:19527031
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr X:137,655,744...137,687,718
Ensembl chr X:132,736,096...132,768,154
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Prtfdc1
phosphoribosyl transferase domain containing 1
NOT|involved_in
ISO
(PMID:21054786)
RGD
PMID:21054786
NCBI chr17:83,549,608...83,654,517
Ensembl chr17:83,548,803...83,655,179
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Ada
adenosine deaminase
acts_upstream_of_or_within involved_in
ISO IEA
MGI:1857117|MGI:2683027 (PMID:10720488) GO_REF:0000107
RGD Ensembl
PMID:10720488
GO_REF:0000107
NCBI chr 3:172,818,174...172,842,283
Ensembl chr 3:152,398,747...152,447,088
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Prps1
phosphoribosyl pyrophosphate synthetase 1
involved_in
ISO
(PMID:17701896)
RGD
PMID:17701896
NCBI chr X:104,132,139...104,154,191
Ensembl chr X:104,132,141...104,154,187
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Uox
urate oxidase
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
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Urad
ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase
involved_in
ISO
(PMID:16462750)
RGD
PMID:16462750
NCBI chr12:7,709,278...7,718,925
Ensembl chr12:7,709,312...7,718,923
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Xdh
xanthine dehydrogenase
involved_in
IDA ISO IEA
(PMID:1590774), (PMID:30936145) PMID:3443108 GO_REF:0000107 (PMID:1619276)
RGD Ensembl
PMID:1590774 PMID:1619276 PMID:30936145 PMID:232638 PMID:3443108
GO_REF:0000107, RGD:13210503 , RGD:42721989
NCBI chr 6:27,282,319...27,344,022
Ensembl chr 6:21,530,113...21,592,268
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Hprt1
hypoxanthine phosphoribosyltransferase 1
acts_upstream_of_or_within involved_in
IDA ISO IBA
MGI:1857297|MGI:1857299 (PMID:10037486), (PMID:3029599) GO_REF:0000033 (PMID:9824441)
RGD GO_Central
PMID:3029599 PMID:9824441 PMID:10037486 PMID:6206848
GO_REF:0000033, RGD:1580844
NCBI chr X:137,655,744...137,687,718
Ensembl chr X:132,736,096...132,768,154
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Ada
adenosine deaminase
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 3:172,818,174...172,842,283
Ensembl chr 3:152,398,747...152,447,088
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Hprt1
hypoxanthine phosphoribosyltransferase 1
involved_in
ISO IEA ISS
(PMID:19527031) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:19527031
GO_REF:0000024 GO_REF:0000107
NCBI chr X:137,655,744...137,687,718
Ensembl chr X:132,736,096...132,768,154
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Paics
phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase
involved_in
ISS ISO
GO_REF:0000024 (PMID:31600779)
UniProt RGD
PMID:31600779
GO_REF:0000024
NCBI chr14:31,553,355...31,586,843
Ensembl chr14:31,173,541...31,232,635
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Ppat
phosphoribosyl pyrophosphate amidotransferase
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr14:31,570,010...31,604,410
Ensembl chr14:31,216,165...31,250,144
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Shmt1
serine hydroxymethyltransferase 1
involved_in
ISO
(PMID:11516159)
RGD
PMID:11516159
NCBI chr10:45,968,959...45,990,341
Ensembl chr10:45,468,700...45,497,820
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Dpyd
dihydropyrimidine dehydrogenase
involved_in
ISO IEA
(PMID:11988088) GO_REF:0000107
RGD Ensembl
PMID:11988088
GO_REF:0000107
NCBI chr 2:209,293,902...210,159,777
Ensembl chr 2:206,609,122...207,474,982
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Uox
urate oxidase
involved_in
TAS IBA
GO_REF:0000033
GO_Central RGD
PMID:3182808
GO_REF:0000033, RGD:730101
NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
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Acp3
acid phosphatase 3
involved_in
IEA ISO
GO_REF:0000107 (PMID:18940592)
Ensembl RGD
PMID:18940592
GO_REF:0000107
NCBI chr 8:113,784,372...113,833,033
Ensembl chr 8:104,905,586...104,954,236
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Adk
adenosine kinase
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr15:2,912,543...3,295,745
Ensembl chr15:2,863,244...3,246,510
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Gmpr
guanosine monophosphate reductase
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr17:19,357,992...19,395,807
Ensembl chr17:19,151,815...19,189,621
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Gmpr2
guanosine monophosphate reductase 2
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr15:29,165,421...29,175,933
Ensembl chr15:29,165,783...29,174,935
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Prps1
phosphoribosyl pyrophosphate synthetase 1
involved_in
ISO
(PMID:8253776)
RGD
PMID:8253776
NCBI chr X:104,132,139...104,154,191
Ensembl chr X:104,132,141...104,154,187
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Ttr
transthyretin
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr18:12,216,684...12,225,972
Ensembl chr18:11,943,789...11,951,008
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Uox
urate oxidase
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
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Urah
urate (5-hydroxyiso-) hydrolase
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:195,905,763...195,909,159
Ensembl chr 1:195,905,763...195,909,159
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Ctps1
CTP synthase 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 5:139,372,349...139,440,441
Ensembl chr 5:134,125,025...134,154,180
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Ctps2
CTP synthase 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr X:35,277,658...35,418,505
Ensembl chr X:31,645,873...31,786,733
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Crmp1
collapsin response mediator protein 1
NOT|involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr14:77,734,675...77,780,916
Ensembl chr14:73,509,933...73,556,177
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Dpyd
dihydropyrimidine dehydrogenase
acts_upstream_of_or_within involved_in
IDA ISO
(PMID:12651209) (PMID:11988088)
RGD
PMID:11988088 PMID:12651209 PMID:1629785
RGD:1599794
NCBI chr 2:209,293,902...210,159,777
Ensembl chr 2:206,609,122...207,474,982
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Dpys
dihydropyrimidinase
involved_in
ISO IBA
(PMID:9718352) GO_REF:0000033
RGD GO_Central
PMID:9718352
GO_REF:0000033
NCBI chr 7:72,707,566...72,814,183
Ensembl chr 7:70,835,789...70,929,231
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Dpysl2
dihydropyrimidinase-like 2
NOT|involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr15:45,181,041...45,287,065
Ensembl chr15:41,005,551...41,111,829
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Dpysl3
dihydropyrimidinase-like 3
NOT|involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr18:35,625,357...35,731,152
Ensembl chr18:35,377,181...35,480,157
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Dpysl4
dihydropyrimidinase-like 4
NOT|involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:203,312,646...203,328,523
Ensembl chr 1:193,883,106...193,898,914
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Dpysl5
dihydropyrimidinase-like 5
NOT|involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 6:25,575,104...25,659,422
Ensembl chr 6:25,575,104...25,659,422
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Rrm1
ribonucleotide reductase catalytic subunit M1
IEP
orotic acid
RGD
PMID:10204803
RGD:5133695
NCBI chr 1:166,235,904...166,260,206
Ensembl chr 1:156,823,960...156,848,261
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Rrm2
ribonucleotide reductase regulatory subunit M2
IEP
orotic acid
RGD
PMID:10204803
RGD:5133695
NCBI chr 6:47,044,755...47,075,370
Ensembl chr 6:41,340,557...41,346,773
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Tymp
thymidine phosphorylase
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 7:122,318,396...122,323,716
Ensembl chr 7:120,438,770...120,443,874 Ensembl chr 7:120,438,770...120,443,874
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Tyms
thymidylate synthetase
IEP
5-fluorocytosine
RGD
PMID:9524100
RGD:5133447
NCBI chr 9:120,760,057...120,776,149
Ensembl chr 9:113,313,452...113,329,536
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Aldh6a1
aldehyde dehydrogenase 6 family, member A1
involved_in
IDA IBA IEA ISO
GO_REF:0000033 GO_REF:0000107 (PMID:23835272)
GO_Central Ensembl RGD
PMID:23835272 PMID:2768248
GO_REF:0000033 GO_REF:0000107, RGD:1599052
NCBI chr 6:109,809,092...109,829,725
Ensembl chr 6:104,077,979...104,098,656
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Dpyd
dihydropyrimidine dehydrogenase
involved_in
ISO IBA IEA
(PMID:10410956) GO_REF:0000033 GO_REF:0000107
RGD GO_Central Ensembl
PMID:10410956
GO_REF:0000033 GO_REF:0000107
NCBI chr 2:209,293,902...210,159,777
Ensembl chr 2:206,609,122...207,474,982
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Dpys
dihydropyrimidinase
involved_in
IDA
PMID:8307005
UniProt
PMID:8307005
RGD:1624990
NCBI chr 7:72,707,566...72,814,183
Ensembl chr 7:70,835,789...70,929,231
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Aldh6a1
aldehyde dehydrogenase 6 family, member A1
involved_in
IDA
PMID:2768248
UniProt
PMID:2768248
RGD:1599052
NCBI chr 6:109,809,092...109,829,725
Ensembl chr 6:104,077,979...104,098,656
G
Dpyd
dihydropyrimidine dehydrogenase
involved_in
ISO IBA ISS IEA
(PMID:1512248), (PMID:18075467) GO_REF:0000033 GO_REF:0000024 GO_REF:0000107
RGD GO_Central UniProt Ensembl
PMID:1512248 PMID:18075467
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr 2:209,293,902...210,159,777
Ensembl chr 2:206,609,122...207,474,982
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Dpys
dihydropyrimidinase
involved_in
ISO IEA IDA
(PMID:10410956), (PMID:18075467) GO_REF:0000107 PMID:8307005
RGD Ensembl
PMID:10410956 PMID:18075467 PMID:8307005
GO_REF:0000107, RGD:1624990
NCBI chr 7:72,707,566...72,814,183
Ensembl chr 7:70,835,789...70,929,231
G
Dpyd
dihydropyrimidine dehydrogenase
IDA
RGD
PMID:7626590
RGD:1624989
NCBI chr 2:209,293,902...210,159,777
Ensembl chr 2:206,609,122...207,474,982
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Dpys
dihydropyrimidinase
IDA
RGD
PMID:7626590 PMID:8307005
RGD:1624989 , RGD:1624990
NCBI chr 7:72,707,566...72,814,183
Ensembl chr 7:70,835,789...70,929,231
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Tyms
thymidylate synthetase
IEP
RGD
PMID:2043679
RGD:5133426
NCBI chr 9:120,760,057...120,776,149
Ensembl chr 9:113,313,452...113,329,536
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Ada
adenosine deaminase
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857117|MGI:2683027 (PMID:10720488)
Ensembl RGD
PMID:10720488
GO_REF:0000107
NCBI chr 3:172,818,174...172,842,283
Ensembl chr 3:152,398,747...152,447,088
G
Uox
urate oxidase
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
G
Urad
ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase
involved_in
ISO
(PMID:16462750)
RGD
PMID:16462750
NCBI chr12:7,709,278...7,718,925
Ensembl chr12:7,709,312...7,718,923
G
Xdh
xanthine dehydrogenase
involved_in
ISO IBA IDA ISS IEA
(PMID:17301077), (PMID:8670112) (PMID:1590774) GO_REF:0000033 PMID:3443108 PMID:15878860 GO_REF:0000024 GO_REF:0000107
RGD GO_Central UniProt Ensembl
PMID:1590774 PMID:8670112 PMID:17301077 PMID:3443108 PMID:15878860
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107, RGD:42721989 , RGD:8553512
NCBI chr 6:27,282,319...27,344,022
Ensembl chr 6:21,530,113...21,592,268
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