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ONTOLOGY REPORT - ANNOTATIONS

Term:glutamine family amino acid biosynthetic process
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Accession:GO:0009084 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of amino acids of the glutamine family, comprising arginine, glutamate, glutamine and proline.
Synonyms:exact_synonym: glutamine family amino acid anabolism;   glutamine family amino acid biosynthesis;   glutamine family amino acid formation;   glutamine family amino acid synthesis


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glutamate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gls glutaminase involved_in IEA
ISO
ISS
IBA		 GO_REF:0000107
(PMID:16899818), (PMID:22049910)
GO_REF:0000024
GO_REF:0000033
(PMID:22228304)		 Ensembl
RGD
UniProt
GO_Central		 PMID:16899818 PMID:22049910 PMID:22228304 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:56,836,584...56,908,861
Ensembl chr 9:49,344,781...49,416,900 		JBrowse link
G Gls2 glutaminase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:1,201,757...1,218,014
Ensembl chr 7:617,288...633,426 		JBrowse link
G Glud1 glutamate dehydrogenase 1 involved_in ISO (PMID:11032875) RGD PMID:11032875 NCBI chr16:9,646,569...9,680,215
Ensembl chr16:9,640,312...9,673,957 		JBrowse link
G Slc25a12 solute carrier family 25 member 12 IMP RGD PMID:19764902 RGD:13628741 NCBI chr 3:76,504,868...76,599,536
Ensembl chr 3:56,097,269...56,192,100 		JBrowse link
glutamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Glul glutamate-ammonia ligase involved_in IDA
IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central
RGD		 PMID:4403443 PMID:28323 GO_REF:0000002 GO_REF:0000033, RGD:2301548, RGD:2301547 NCBI chr13:68,519,500...68,585,554
Ensembl chr13:66,025,630...66,035,108 		JBrowse link
G Lgsn lengsin, lens protein with glutamine synthetase domain involved_in
NOT|involved_in		 IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 9:40,912,398...40,943,955
Ensembl chr 9:33,420,484...33,447,907 		JBrowse link
L-arginine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase involved_in NAS
IEA
ISO
ISS		 GO_REF:0000043
GO_REF:0000041
(PMID:22081021)
(PMID:11747432), (PMID:11747433)
GO_REF:0000024		 UniProt
RGD		 PMID:11747432 PMID:11747433 PMID:22081021 PMID:2789519 GO_REF:0000024 GO_REF:0000041 GO_REF:0000043, RGD:632221 NCBI chr12:32,295,779...32,313,257
Ensembl chr12:26,659,565...26,679,662 		JBrowse link
G Ass1 argininosuccinate synthase 1 involved_in IDA
IEA
ISO
IMP
IBA		 GO_REF:0000041
(PMID:18473344), (PMID:27287393), (PMID:8792870)
PMID:19491403
GO_REF:0000033
GO_REF:0000002
GO_REF:0000043
GO_REF:0000107		 UniProt
RGD
GO_Central
InterPro
Ensembl		 PMID:8792870 PMID:18473344 PMID:27287393 PMID:12470967 PMID:19491403 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107, RGD:631755, RGD:12859071 NCBI chr 3:35,144,765...35,194,632
Ensembl chr 3:14,747,368...14,796,903 		JBrowse link
G Nags N-acetylglutamate synthase involved_in IEA
IBA		 GO_REF:0000041
GO_REF:0000002
GO_REF:0000033		 UniProt
InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 NCBI chr10:87,098,330...87,102,465
Ensembl chr10:87,098,330...87,102,465 		JBrowse link
G Otc ornithine transcarbamylase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:15,126,358...15,202,473
Ensembl chr  X:12,453,834...12,566,918 		JBrowse link
L-arginine biosynthetic process via ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr12:32,295,779...32,313,257
Ensembl chr12:26,659,565...26,679,662 		JBrowse link
G Otc ornithine transcarbamylase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:15,126,358...15,202,473
Ensembl chr  X:12,453,834...12,566,918 		JBrowse link
L-glutamate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 IDA RGD PMID:16489927 RGD:13504861 NCBI chr 1:252,306,541...252,337,622
Ensembl chr 1:242,357,306...242,380,633 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 IDA RGD PMID:16489927 RGD:13504861 NCBI chr19:9,180,428...9,206,113
Ensembl chr19:9,174,311...9,199,994 		JBrowse link
L-proline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh18a1 aldehyde dehydrogenase 18 family, member A1 involved_in IEA GO_REF:0000041
GO_REF:0000104		 UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr 1:249,325,082...249,357,383
Ensembl chr 1:239,375,669...239,407,890 		JBrowse link
G Eef1d eukaryotic translation elongation factor 1 delta involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:107,581,930...107,596,735
Ensembl chr 7:107,581,930...107,608,799 		JBrowse link
G Noxred1 NADP-dependent oxidoreductase domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:106,862,350...106,888,113
Ensembl chr 6:106,862,343...106,884,712 		JBrowse link
G Oat ornithine aminotransferase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:196,777,973...196,797,754
Ensembl chr 1:187,347,865...187,367,682 		JBrowse link
G Pycr1 pyrroline-5-carboxylate reductase 1 involved_in IEA
ISO
IBA		 GO_REF:0000041
(PMID:23024808), (PMID:28258219)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:23024808 PMID:28258219 GO_REF:0000033 GO_REF:0000041 NCBI chr10:106,416,056...106,420,982
Ensembl chr10:105,917,680...105,922,549 		JBrowse link
G Pycr2 pyrroline-5-carboxylate reductase 2 involved_in IEA
IBA		 GO_REF:0000041
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 NCBI chr13:92,626,462...92,630,256
Ensembl chr13:92,626,471...92,634,184 		JBrowse link
G Pycr3 pyrroline-5-carboxylate reductase 3 involved_in IEA
ISO
IBA
ISS		 GO_REF:0000041
(PMID:23024808), (PMID:36414121)
GO_REF:0000033
GO_REF:0000024		 UniProt
RGD
GO_Central		 PMID:23024808 PMID:36414121 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 NCBI chr 7:107,603,543...107,608,831
Ensembl chr 7:107,581,930...107,608,799 		JBrowse link
proline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh18a1 aldehyde dehydrogenase 18 family, member A1 involved_in ISO
IEA		 (PMID:11092761), (PMID:26297558)
GO_REF:0000043
GO_REF:0000002
GO_REF:0000107		 RGD
UniProt
InterPro
Ensembl		 PMID:11092761 PMID:26297558 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chr 1:249,325,082...249,357,383
Ensembl chr 1:239,375,669...239,407,890 		JBrowse link
G Eef1d eukaryotic translation elongation factor 1 delta involved_in IEA GO_REF:0000002
GO_REF:0000043		 InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr 7:107,581,930...107,596,735
Ensembl chr 7:107,581,930...107,608,799 		JBrowse link
G Pycr1 pyrroline-5-carboxylate reductase 1 involved_in ISO
IEA		 (PMID:16730026)
GO_REF:0000002
GO_REF:0000043		 RGD
InterPro
UniProt		 PMID:16730026 GO_REF:0000002 GO_REF:0000043 NCBI chr10:106,416,056...106,420,982
Ensembl chr10:105,917,680...105,922,549 		JBrowse link
G Pycr2 pyrroline-5-carboxylate reductase 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
GO_REF:0000002
GO_REF:0000043
(PMID:23024808)		 UniProt
Ensembl
InterPro
RGD		 PMID:23024808 GO_REF:0000002 GO_REF:0000024 GO_REF:0000043 GO_REF:0000107 NCBI chr13:92,626,462...92,630,256
Ensembl chr13:92,626,471...92,634,184 		JBrowse link
G Pycr3 pyrroline-5-carboxylate reductase 3 involved_in IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 7:107,603,543...107,608,831
Ensembl chr 7:107,581,930...107,608,799 		JBrowse link
regulation of arginine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO
IEA		 (PMID:19284480)
GO_REF:0000107		 RGD
Ensembl		 PMID:19284480 GO_REF:0000107 NCBI chr 1:190,586,649...190,600,034
Ensembl chr 1:181,156,073...181,167,434 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20567
    cellular process 19557
      metabolic process 12206
        primary metabolic process 10763
          amino acid metabolic process 305
            proteinogenic amino acid metabolic process 177
              proteinogenic amino acid biosynthetic process 60
                glutamine family amino acid biosynthetic process 20
                  L-arginine biosynthetic process + 5
                  glutamate biosynthetic process + 6
                  glutamine biosynthetic process + 2
                  proline biosynthetic process + 7
Path 2
Term Annotations click to browse term
  biological_process 20567
    cellular process 19557
      metabolic process 12206
        small molecule metabolic process 1947
          organic acid metabolic process 1062
            oxoacid metabolic process 1040
              carboxylic acid metabolic process 1025
                alpha-amino acid metabolic process 224
                  L-amino acid metabolic process 185
                    L-amino acid biosynthetic process 54
                      glutamine family amino acid biosynthetic process 20
                        L-arginine biosynthetic process + 5
                        glutamate biosynthetic process + 6
                        glutamine biosynthetic process + 2
                        proline biosynthetic process + 7
paths to the root