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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA binding, bending
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Accession:GO:0008301 term browser browse the term
Definition:The activity of binding selectively and non-covalently to and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
Synonyms:exact_synonym: DNA bending activity;   DNA bending involving DNA binding


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DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXC1 forkhead box C1 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:837,088...840,593
Ensembl chr 7:837,171...838,805 		JBrowse link
G FOXD1 forkhead box D1 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:82,607,113...82,612,005
Ensembl chr 2:82,607,848...82,609,248 		JBrowse link
G HHEX hematopoietically expressed homeobox enables IEA Ensembl GO_REF:0000107 NCBI chr14:104,194,424...104,199,684
Ensembl chr14:104,194,343...104,200,219 		JBrowse link
G HMGA1 high mobility group AT-hook 1 enables ISO (PMID:22615915) DisProt PMID:22615915 NCBI chr 7:30,320,090...30,329,413
Ensembl chr 7:30,320,410...30,329,408 		JBrowse link
G HMGA2 high mobility group AT-hook 2 enables ISO (PMID:20108983)
(PMID:14627817)		 UniProt PMID:14627817 PMID:20108983 NCBI chr 5:30,188,521...30,329,635 JBrowse link
G HMGB1 high mobility group box 1 enables ISO
IBA
IEA		 RGD
GO_Central
UniProt		 PMID:17964600 GO_REF:0000033 GO_REF:0000117 RGD:2316774 NCBI chr11:7,195,556...7,321,071 JBrowse link
G HMGB2 high mobility group box 2 enables IEA
IBA
IDA
ISS		 (PMID:11275566) Ensembl
GO_Central
UniProt		 PMID:11275566 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr14:16,709,966...16,712,288
Ensembl chr14:16,710,047...16,717,101 		JBrowse link
G HMGB3 high mobility group box 3 enables IEA UniProt GO_REF:0000117 NCBI chr  X:122,591,413...122,599,496
Ensembl chr  X:122,592,936...122,599,493 		JBrowse link
G HMGB4 high mobility group box 4 enables IBA GO_Central GO_REF:0000033 NCBI chr 6:90,133,911...90,136,413
Ensembl chr 6:90,135,806...90,136,396 		JBrowse link
G LEF1 lymphoid enhancer binding factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:113,824,511...113,944,078
Ensembl chr 8:113,825,161...113,944,070 		JBrowse link
G LOC100359361 high mobility group AT-hook 2-like enables ISS UniProt GO_REF:0000024 NCBI chr 1:191,094,785...191,105,394 JBrowse link
G SRY sex determining region Y enables ISO (PMID:7774816) UniProt PMID:7774816 NCBI chr  Y:40,484,990...40,485,700
Ensembl chr  Y:40,484,990...40,485,700 		JBrowse link
G TERF1 telomeric repeat binding factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 4:62,797,244...62,831,459
Ensembl chr 4:62,797,000...62,831,454 		JBrowse link
G TFAM transcription factor A, mitochondrial enables IBA GO_Central GO_REF:0000033 NCBI chr14:92,261,713...92,279,731
Ensembl chr14:92,259,403...92,279,731 		JBrowse link
G TOP1 DNA topoisomerase I enables ISO (PMID:11283003) DisProt PMID:11283003 NCBI chr17:43,710,270...43,799,700
Ensembl chr17:43,710,290...43,799,700 		JBrowse link
G TOP2A DNA topoisomerase II alpha enables ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr12:22,001,300...22,028,452
Ensembl chr12:22,001,282...22,028,450 		JBrowse link
G TREX1 three prime repair exonuclease 1 enables IEA Ensembl GO_REF:0000107 NCBI chr13:31,177,604...31,180,764
Ensembl chr13:31,179,291...31,180,747 		JBrowse link
non-sequence-specific DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGB1 high mobility group box 1 enables IDA (PMID:11275566) AgBase PMID:11275566 NCBI chr11:7,195,556...7,321,071 JBrowse link
G HMGB2 high mobility group box 2 enables IDA (PMID:11275566) AgBase PMID:11275566 NCBI chr14:16,709,966...16,712,288
Ensembl chr14:16,710,047...16,717,101 		JBrowse link
G SAP30L SAP30 like enables IEA Ensembl GO_REF:0000107 NCBI chr16:68,695,892...68,709,952
Ensembl chr16:68,695,900...68,709,742 		JBrowse link
RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEBPG CCAAT enhancer binding protein gamma ISO RGD PMID:1377818 RGD:69946 NCBI chr 6:43,164,902...43,175,002
Ensembl chr 6:43,164,919...43,174,990 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19428
    binding 16980
      nucleic acid binding 4103
        DNA binding 2152
          DNA binding, bending 19
            non-sequence-specific DNA binding, bending 3
            sequence-specific DNA binding, bending + 1
paths to the root