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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA binding, bending
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Accession:GO:0008301 term browser browse the term
Definition:The activity of binding selectively and non-covalently to and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
Synonyms:exact_synonym: DNA bending activity;   DNA bending involving DNA binding

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DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc1 forkhead box C1 enables ISO (PMID:14506133), (PMID:7957066) UniProt PMID:7957066 PMID:14506133 NCBI chrNW_004624756:23,060,065...23,062,407
Ensembl chrNW_004624756:23,060,751...23,062,343 		JBrowse link
G Foxd1 forkhead box D1 enables ISO (PMID:7957066) MGI PMID:7957066 NCBI chrNW_004624905:2,487,981...2,490,068 JBrowse link
G Hhex hematopoietically expressed homeobox enables ISO (PMID:18755198) BHF-UCL PMID:18755198 NCBI chrNW_004624737:3,897,907...3,903,828
Ensembl chrNW_004624737:3,897,871...3,904,083 		JBrowse link
G Hmga1 high mobility group AT-hook 1 enables ISO (PMID:22615915) DisProt PMID:22615915 NCBI chrNW_004624754:22,888,052...22,900,685
Ensembl chrNW_004624754:22,892,226...22,898,807 		JBrowse link
G Hmga2 high mobility group AT-hook 2 enables ISO (PMID:20108983)
(PMID:14627817)		 UniProt PMID:14627817 PMID:20108983 NCBI chrNW_004624802:2,337,344...2,468,757
Ensembl chrNW_004624802:2,337,464...2,467,990 		JBrowse link
G Hmgb1 high mobility group box 1 enables ISO
ISS		 RGD
AgBase		 PMID:17964600 GO_REF:0000024 RGD:2316774 NCBI chrNW_004624776:7,858,400...7,862,716
Ensembl chrNW_004624776:7,793,259...7,863,184 		JBrowse link
G Hmgb2 high mobility group box 2 enables ISS AgBase GO_REF:0000024 NCBI chrNW_004624769:4,834,998...4,837,111 JBrowse link
G Lef1 lymphoid enhancer binding factor 1 enables ISO (PMID:15236581)
(PMID:7774816)		 DisProt
UniProt		 PMID:7774816 PMID:15236581 NCBI chrNW_004624830:1,320,034...1,422,774
Ensembl chrNW_004624830:1,321,387...1,424,389 		JBrowse link
G Terf1 telomeric repeat binding factor 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624744:18,120,677...18,156,920
Ensembl chrNW_004624744:18,121,687...18,156,989 		JBrowse link
G Top1 DNA topoisomerase I enables ISO (PMID:11283003) DisProt PMID:11283003 NCBI chrNW_004624919:1,668,712...1,756,624
Ensembl chrNW_004624919:1,668,440...1,756,629 		JBrowse link
G Trex1 three prime repair exonuclease 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:2,431,270...2,433,010
Ensembl chrNW_004624730:2,431,999...2,432,959 		JBrowse link
non-sequence-specific DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 enables ISS AgBase GO_REF:0000024 NCBI chrNW_004624776:7,858,400...7,862,716
Ensembl chrNW_004624776:7,793,259...7,863,184 		JBrowse link
G Hmgb2 high mobility group box 2 enables ISS AgBase GO_REF:0000024 NCBI chrNW_004624769:4,834,998...4,837,111 JBrowse link
G Sap30l SAP30 like enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:34,744,638...34,757,727
Ensembl chrNW_004624733:34,744,554...34,757,764 		JBrowse link
RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cebpg CCAAT enhancer binding protein gamma ISO RGD PMID:1377818 RGD:69946 NCBI chrNW_004624794:9,727,616...9,736,729
Ensembl chrNW_004624794:9,729,876...9,736,516 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 18442
    binding 16096
      nucleic acid binding 3877
        DNA binding 2157
          DNA binding, bending 13
            non-sequence-specific DNA binding, bending 3
            sequence-specific DNA binding, bending + 1
paths to the root