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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA binding, bending
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Accession:GO:0008301 term browser browse the term
Definition:The activity of binding selectively and non-covalently to and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
Synonyms:exact_synonym: DNA bending activity;   DNA bending involving DNA binding


show annotations for term's descendants           Sort by:
DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc1 forkhead box C1 enables ISO
ISS		 (PMID:7957066) GO_Central
UniProt		 PMID:7957066 GO_REF:0000024 GO_REF:0000119 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
G Foxd1 forkhead box D1 enables ISO (PMID:7957066) GO_Central PMID:7957066 GO_REF:0000119 NCBI chr13:98,490,753...98,493,213
Ensembl chr13:98,490,750...98,495,813 		JBrowse link
G Hhex hematopoietically expressed homeobox enables ISO GO_Central GO_REF:0000119 NCBI chr19:37,423,289...37,429,179
Ensembl chr19:37,423,258...37,429,179 		JBrowse link
G Hmga1 high mobility group AT-hook 1 enables ISO GO_Central GO_REF:0000119 NCBI chr17:27,774,798...27,782,649
Ensembl chr17:27,775,471...27,782,648 		JBrowse link
G Hmga1b high mobility group AT-hook 1B enables ISO GO_Central GO_REF:0000119 NCBI chr11:120,653,620...120,655,218
Ensembl chr11:120,653,620...120,655,245 		JBrowse link
G Hmga2 high mobility group AT-hook 2 enables ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr10:120,197,173...120,312,374
Ensembl chr10:120,197,180...120,312,374 		JBrowse link
G Hmgb1 high mobility group box 1 enables ISO
IBA
ISS		 RGD
GO_Central
AgBase		 PMID:17964600 GO_REF:0000024 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 RGD:2316774 NCBI chr 5:148,983,512...148,989,867
Ensembl chr 5:148,983,512...149,121,299 		JBrowse link
G Hmgb2 high mobility group box 2 enables ISS
IBA
ISO		 UniProt
GO_Central
AgBase		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 8:57,964,877...57,969,033
Ensembl chr 8:57,964,941...57,969,033 		JBrowse link
G Hmgb3 high mobility group box 3 enables ISS AgBase GO_REF:0000024 NCBI chr  X:70,599,523...70,604,261
Ensembl chr  X:70,599,524...70,604,282 		JBrowse link
G Hmgb4 high-mobility group box 4 enables IBA GO_Central GO_REF:0000033 NCBI chr 4:128,154,005...128,154,688
Ensembl chr 4:128,154,005...128,154,750 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 enables EXP
IDA		 (PMID:15236581)
(PMID:7774816)		 DisProt
UniProt		 PMID:7774816 PMID:15236581 NCBI chr 3:130,903,972...131,018,006
Ensembl chr 3:130,904,120...131,018,005 		JBrowse link
G Sry sex determining region of Chr Y enables IDA (PMID:7774816) UniProt PMID:7774816 NCBI chr  Y:2,662,471...2,663,658
Ensembl chr  Y:2,662,471...2,663,658 		JBrowse link
G Terf1 telomeric repeat binding factor 1 enables ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 1:15,875,634...15,914,283
Ensembl chr 1:15,875,870...15,914,276 		JBrowse link
G Tfam transcription factor A, mitochondrial enables IBA GO_Central GO_REF:0000033 NCBI chr10:71,061,298...71,074,157
Ensembl chr10:71,061,294...71,074,110 		JBrowse link
G Top1 topoisomerase (DNA) I enables ISO GO_Central GO_REF:0000119 NCBI chr 2:160,487,901...160,564,684
Ensembl chr 2:160,487,808...160,564,684 		JBrowse link
G Top2a topoisomerase (DNA) II alpha enables ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:98,883,773...98,915,037
Ensembl chr11:98,883,769...98,915,015 		JBrowse link
G Trex1 three prime repair exonuclease 1 enables IDA (PMID:25848017) MGI PMID:25848017 NCBI chr 9:108,887,000...108,888,791
Ensembl chr 9:108,887,001...108,888,802 		JBrowse link
non-sequence-specific DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 enables ISO (PMID:11275566) AgBase PMID:11275566 NCBI chr 5:148,983,512...148,989,867
Ensembl chr 5:148,983,512...149,121,299 		JBrowse link
G Hmgb2 high mobility group box 2 enables ISS AgBase GO_REF:0000024 NCBI chr 8:57,964,877...57,969,033
Ensembl chr 8:57,964,941...57,969,033 		JBrowse link
G Sap30l SAP30-like enables ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:57,692,439...57,705,707
Ensembl chr11:57,692,463...57,701,043 		JBrowse link
RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cebpg CCAAT/enhancer binding protein gamma enables ISO RGD
GO_Central		 PMID:1377818 GO_REF:0000096 RGD:69946 NCBI chr 7:34,745,847...34,755,991
Ensembl chr 7:34,745,847...34,755,998 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 28796
    binding 17614
      nucleic acid binding 3756
        DNA binding 2357
          DNA binding, bending 19
            non-sequence-specific DNA binding, bending 3
            sequence-specific DNA binding, bending + 1
paths to the root