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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA binding, bending
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Accession:GO:0008301 term browser browse the term
Definition:The activity of binding selectively and non-covalently to and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
Synonyms:exact_synonym: DNA bending activity;   DNA bending involving DNA binding


show annotations for term's descendants           Sort by:
DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXC1 forkhead box C1 enables IDA (PMID:14506133), (PMID:7957066) UniProt PMID:7957066 PMID:14506133 NCBI chr 6:1,609,915...1,613,897
Ensembl chr 6:1,609,915...1,613,897 		JBrowse link
G FOXD1 forkhead box D1 enables IDA (PMID:7957066) UniProt PMID:7957066 NCBI chr 5:73,446,266...73,448,777
Ensembl chr 5:73,444,827...73,448,777 		JBrowse link
G FOXD4 forkhead box D4 enables ISS (PMID:7957066) UniProt PMID:7957066 NCBI chr 9:116,231...118,417
Ensembl chr 9:116,231...118,417 		JBrowse link
G FOXI1 forkhead box I1 enables NAS (PMID:7957066) UniProt PMID:7957066 NCBI chr 5:170,105,897...170,109,737
Ensembl chr 5:170,105,897...170,109,734 		JBrowse link
G FOXL1 forkhead box L1 enables NAS (PMID:7957066) UniProt PMID:7957066 NCBI chr16:86,578,549...86,583,478
Ensembl chr16:86,576,368...86,583,478 		JBrowse link
G HHEX hematopoietically expressed homeobox enables IDA (PMID:18755198) BHF-UCL PMID:18755198 NCBI chr10:92,689,955...92,695,647
Ensembl chr10:92,689,955...92,695,647 		JBrowse link
G HMGA1 high mobility group AT-hook 1 enables EXP (PMID:22615915) DisProt PMID:22615915 NCBI chr 6:34,236,873...34,246,231
Ensembl chr 6:34,236,873...34,246,231 		JBrowse link
G HMGA2 high mobility group AT-hook 2 enables IMP
IDA		 (PMID:14627817)
(PMID:20108983)		 UniProt PMID:14627817 PMID:20108983 NCBI chr12:65,824,460...65,966,291
Ensembl chr12:65,824,460...65,966,291 		JBrowse link
G HMGB1 high mobility group box 1 enables ISO
IBA
ISS
IMP		 (PMID:19223331) RGD
GO_Central
AgBase
UniProt		 PMID:17964600 PMID:19223331 GO_REF:0000024 GO_REF:0000033 RGD:2316774 NCBI chr13:30,456,704...30,617,597
Ensembl chr13:30,456,704...30,617,597 		JBrowse link
G HMGB1P1 high mobility group box 1 pseudogene 1 enables IBA GO_Central GO_REF:0000033 NCBI chr20:57,487,941...57,489,130
Ensembl chr20:57,487,959...57,495,366 		JBrowse link
G HMGB2 high mobility group box 2 enables IDA
IBA		 (PMID:11909973), (PMID:8339930) UniProt
GO_Central		 PMID:8339930 PMID:11909973 GO_REF:0000033 NCBI chr 4:173,331,376...173,334,358
Ensembl chr 4:173,331,376...173,334,432 		JBrowse link
G HMGB3 high mobility group box 3 enables ISS
TAS		 (PMID:9598312) AgBase
UniProt
PINC		 PMID:9598312 GO_REF:0000024 NCBI chr  X:150,980,507...150,990,771
Ensembl chr  X:150,980,509...150,990,771 		JBrowse link
G HMGB4 high mobility group box 4 enables IBA GO_Central GO_REF:0000033 NCBI chr 1:33,860,475...33,864,791
Ensembl chr 1:33,860,475...33,864,791 		JBrowse link
G LEF1 lymphoid enhancer binding factor 1 enables ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:108,047,548...108,168,932
Ensembl chr 4:108,047,545...108,168,956 		JBrowse link
G SRY sex determining region Y enables ISO (PMID:7774816) UniProt PMID:7774816 NCBI chr  Y:2,786,855...2,787,682
Ensembl chr  Y:2,786,855...2,787,682 		JBrowse link
G TERF1 telomeric repeat binding factor 1 enables IDA (PMID:9130722) BHF-UCL PMID:9130722 NCBI chr 8:73,008,864...73,048,123
Ensembl chr 8:73,008,856...73,048,123 		JBrowse link
G TFAM transcription factor A, mitochondrial enables IBA GO_Central GO_REF:0000033 NCBI chr10:58,385,410...58,399,220
Ensembl chr10:58,385,345...58,399,220 		JBrowse link
G TOP1 DNA topoisomerase I enables EXP (PMID:11283003) DisProt PMID:11283003 NCBI chr20:41,028,822...41,124,487
Ensembl chr20:41,028,822...41,124,487 		JBrowse link
G TOP2A DNA topoisomerase II alpha enables IDA (PMID:22323612) UniProt PMID:22323612 NCBI chr17:40,388,525...40,417,896
Ensembl chr17:40,388,525...40,417,896 		JBrowse link
G TREX1 three prime repair exonuclease 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:48,465,830...48,467,645
Ensembl chr 3:48,465,811...48,467,645 		JBrowse link
non-sequence-specific DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGB1 high mobility group box 1 enables ISO (PMID:11275566) AgBase PMID:11275566 NCBI chr13:30,456,704...30,617,597
Ensembl chr13:30,456,704...30,617,597 		JBrowse link
G HMGB2 high mobility group box 2 enables ISS AgBase GO_REF:0000024 NCBI chr 4:173,331,376...173,334,358
Ensembl chr 4:173,331,376...173,334,432 		JBrowse link
G SAP30L SAP30 like enables IDA (PMID:19015240) UniProt PMID:19015240 NCBI chr 5:154,445,997...154,461,053
Ensembl chr 5:154,445,997...154,461,053 		JBrowse link
RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEBPG CCAAT enhancer binding protein gamma ISO RGD PMID:1377818 RGD:69946 NCBI chr19:33,373,709...33,382,686
Ensembl chr19:33,373,685...33,382,686 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19683
    binding 18143
      nucleic acid binding 4752
        DNA binding 2656
          DNA binding, bending 22
            non-sequence-specific DNA binding, bending 3
            sequence-specific DNA binding, bending + 1
paths to the root