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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA binding, bending
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Accession:GO:0008301 term browser browse the term
Definition:The activity of binding selectively and non-covalently to and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
Synonyms:exact_synonym: DNA bending activity;   DNA bending involving DNA binding

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DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXC1 forkhead box C1 enables IEA Ensembl GO_REF:0000107 NCBI chr17:70,533,048...70,536,555
Ensembl chr17:70,534,821...70,536,476 		JBrowse link
G FOXD1 forkhead box D1 enables ISO (PMID:7957066) MGI PMID:7957066 NCBI chr 4:67,790,423...67,796,901 JBrowse link
G HHEX hematopoietically expressed homeobox enables IEA Ensembl GO_REF:0000107 NCBI chr 9:85,957,684...85,963,414
Ensembl chr 9:85,957,779...85,963,404 		JBrowse link
G HMGA1 high mobility group AT-hook 1 enables ISO (PMID:22615915) DisProt PMID:22615915 NCBI chr17:37,848,110...37,857,835
Ensembl chr17:37,849,412...37,853,880 		JBrowse link
G HMGA2 high mobility group AT-hook 2 enables ISO (PMID:20108983)
(PMID:14627817)		 UniProt PMID:14627817 PMID:20108983 NCBI chr11:61,509,114...61,655,633 JBrowse link
G HMGB1 high mobility group box 1 enables ISO (PMID:19223331) RGD
UniProt		 PMID:17964600 PMID:19223331 RGD:2316774 NCBI chr 3:9,353,333...9,357,765 JBrowse link
G HMGB2 high mobility group box 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:119,440,089...119,442,806
Ensembl chr 7:119,440,468...119,443,578 		JBrowse link
G LEF1 lymphoid enhancer binding factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:55,974,770...56,096,214
Ensembl chr 7:55,990,621...56,094,110 		JBrowse link
G SRY sex determining region Y enables ISO (PMID:7774816) UniProt PMID:7774816 NCBI chr  X:927,143...928,924
Ensembl chr  X:927,692...928,303 		JBrowse link
G TERF1 telomeric repeat binding factor 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:68,608,830...68,647,220
Ensembl chr 8:68,608,844...68,648,171 		JBrowse link
G TOP1 DNA topoisomerase I enables ISO (PMID:11283003) DisProt PMID:11283003 NCBI chr 2:22,655,085...22,751,082
Ensembl chr 2:22,651,995...22,751,102 		JBrowse link
G TOP2A DNA topoisomerase II alpha enables IEA Ensembl GO_REF:0000107 NCBI chr16:65,761,391...65,792,041
Ensembl chr16:65,761,416...65,792,701 		JBrowse link
G TREX1 three prime repair exonuclease 1 enables ISO (PMID:25848017) MGI PMID:25848017 NCBI chr22:9,869,502...9,871,659 JBrowse link
non-sequence-specific DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGB1 high mobility group box 1 enables ISO (PMID:11275566) AgBase PMID:11275566 NCBI chr 3:9,353,333...9,357,765 JBrowse link
G HMGB2 high mobility group box 2 enables ISO (PMID:11275566) AgBase PMID:11275566 NCBI chr 7:119,440,089...119,442,806
Ensembl chr 7:119,440,468...119,443,578 		JBrowse link
G SAP30L SAP30 like enables IEA Ensembl GO_REF:0000107 NCBI chr23:56,900,806...56,916,238
Ensembl chr23:56,900,843...56,916,259 		JBrowse link
RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEBPG CCAAT enhancer binding protein gamma ISO RGD PMID:1377818 RGD:69946 NCBI chr 6:28,415,448...28,424,463 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19845
    binding 18023
      nucleic acid binding 4834
        DNA binding 2244
          DNA binding, bending 15
            non-sequence-specific DNA binding, bending 3
            sequence-specific DNA binding, bending + 1
paths to the root